Virological - Discussion forum for analysis of virus genomes

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class="topic-list-container" itemscope itemtype='http://schema.org/ItemList'> <meta itemprop='itemListOrder' content='http://schema.org/ItemListOrderDescending'> <table class='topic-list'> <thead> <tr> <th>Topic</th> <th></th> <th class="replies">Replies</th> <th class="views">Views</th> <th>Activity</th> </tr> </thead> <tbody> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='1'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/methods-for-molecular-transmission-cluster-detection/934' class='title raw-link raw-topic-link'>Methods for molecular transmission cluster detection</a> </span> <div class="link-bottom-line"> <a href='/c/methods/19' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #BF1E2E'></span> <span class='badge-category clear-badge'> <span class='category-name'>Methods</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/snadeau" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/s/cdc98d/25.png" class="avatar" title='snadeau - Original Poster, Most Recent Poster' aria-label='snadeau - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>1</span> </td> <td class="views"> <span class='views' title='views'>5245</span> </td> <td> May 30, 2023 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='2'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/an-apobec3-molecular-clock-to-estimate-the-date-of-emergence-of-hmpxv/885' class='title raw-link raw-topic-link'>An APOBEC3 molecular clock to estimate the date of emergence of hMPXV</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/evolution/48' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #12A89D'></span> <span class='badge-category clear-badge'> <span class='category-name'>Evolution</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/arambaut" class="latest single"> <img width="25" height="25" src="/user_avatar/virological.org/arambaut/25/425_2.png" class="avatar" title='arambaut - Original Poster, Most Recent Poster' aria-label='arambaut - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>13310</span> </td> <td> August 6, 2022 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='3'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/chikungunya-in-paraguay-during-the-first-country-wide-outbreak-new-clade-of-ecsa-genotype-harboring-structural-and-non-structural-protein-mutations/933' class='title raw-link raw-topic-link'>Chikungunya in Paraguay during the first country-wide outbreak: new clade of ECSA genotype harboring structural and non-structural protein mutations</a> </span> <div class="link-bottom-line"> <a href='/c/chikungunya-virus/15' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #3AB54A'></span> <span class='badge-category clear-badge'> <span class='category-name'>Chikungunya virus</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/PaulCardenas" class="latest single"> <img width="25" height="25" src="/user_avatar/virological.org/paulcardenas/25/1481_2.png" class="avatar" title='PaulCardenas - Original Poster, Most Recent Poster' aria-label='PaulCardenas - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>8977</span> </td> <td> May 26, 2023 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='4'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/repeated-loss-of-orf8-expression-in-circulating-sars-cov-2-lineages/931' class='title raw-link raw-topic-link'>Repeated loss of ORF8 expression in circulating SARS-CoV-2 lineages</a> </span> <div class="link-bottom-line"> <a href='/c/novel-2019-coronavirus/33' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #3AB54A'></span> <span class='badge-category clear-badge'> <span class='category-name'>SARS-CoV-2 coronavirus</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/thomasppeacock" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/t/c68b51/25.png" class="avatar" title='thomasppeacock - Original Poster, Most Recent Poster' aria-label='thomasppeacock - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>8958</span> </td> <td> April 26, 2023 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='5'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/first-emergence-of-marburg-virus-in-equatorial-guinea-2023/924' class='title raw-link raw-topic-link'>First emergence of Marburg virus in Equatorial Guinea, 2023</a> </span> <div class="link-bottom-line"> <a href='/c/marburg-virus/25' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #ED207B'></span> <span class='badge-category clear-badge'> <span class='category-name'>Marburg virus</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/mmdiagne" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/m/85e7bf/25.png" class="avatar" title='mmdiagne - Original Poster, Most Recent Poster' aria-label='mmdiagne - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>9490</span> </td> <td> March 23, 2023 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='6'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/wastewater-samples-cannot-be-used-for-genome-assembly/921' class='title raw-link raw-topic-link'>Wastewater samples CANNOT be used for genome assembly</a> </span> <div class="link-bottom-line"> <a href='/c/novel-2019-coronavirus/software-and-tools/42' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #F7941D'></span> <span class='badge-category clear-badge'> <span class='category-name'>Software and Tools</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/gener" class="latest"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/g/f14d63/25.png" class="avatar" title='gener - Original Poster, Most Recent Poster' aria-label='gener - Original Poster, Most Recent Poster'> </a> <a href="https://virological.org/u/Kristian_Andersen" class=""> <img width="25" height="25" src="/user_avatar/virological.org/kristian_andersen/25/521_2.png" class="avatar" title='Kristian_Andersen - Frequent Poster' aria-label='Kristian_Andersen - Frequent Poster'> </a> <a href="https://virological.org/u/alexcritschristoph" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/a/d6d6ee/25.png" class="avatar" title='alexcritschristoph - Frequent Poster' aria-label='alexcritschristoph - Frequent Poster'> </a> <a href="https://virological.org/u/theosanderson" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/t/e95f7d/25.png" class="avatar" title='theosanderson - Frequent Poster' aria-label='theosanderson - Frequent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>7</span> </td> <td class="views"> <span class='views' title='views'>7869</span> </td> <td> March 3, 2023 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='7'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/preliminary-analysis-of-selected-sudan-ebola-virus-isolates-from-the-2022-uganda-outbreak/919' class='title raw-link raw-topic-link'>Preliminary analysis of selected Sudan Ebola Virus isolates from the 2022 Uganda outbreak</a> </span> <div class="link-bottom-line"> <a href='/c/ebolavirus/9' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #0E76BD'></span> <span class='badge-category clear-badge'> <span class='category-name'>Ebolavirus</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/Kanyerezi" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/k/8edcca/25.png" class="avatar" title='Kanyerezi - Original Poster, Most Recent Poster' aria-label='Kanyerezi - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>6224</span> </td> <td> January 24, 2023 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='8'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/the-comparative-recency-of-the-proximal-ancestors-of-sars-cov-1-and-sars-cov-2/906' class='title raw-link raw-topic-link'>The comparative recency of the proximal ancestors of SARS-CoV-1 and SARS-CoV-2</a> </span> <div class="link-bottom-line"> <a href='/c/novel-2019-coronavirus/ncov-2019-evolutionary-history/35' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #9EB83B'></span> <span class='badge-category clear-badge'> <span class='category-name'>nCoV-2019 Evolutionary History</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/jepekar" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/j/8c91f0/25.png" class="avatar" title='jepekar - Original Poster' aria-label='jepekar - Original Poster'> </a> <a href="https://virological.org/u/ebom" class="latest"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/e/e495f1/25.png" class="avatar" title='ebom - Most Recent Poster' aria-label='ebom - Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>1</span> </td> <td class="views"> <span class='views' title='views'>13419</span> </td> <td> December 22, 2022 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='9'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/september-2022-sudan-ebola-virus-disease-outbreak-in-uganda/902' class='title raw-link raw-topic-link'>September 2022 Sudan Ebola virus disease outbreak in Uganda</a> </span> <div class="link-bottom-line"> <a href='/c/ebolavirus/9' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #0E76BD'></span> <span class='badge-category clear-badge'> <span class='category-name'>Ebolavirus</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/evk3" class="latest"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/e/c68b51/25.png" class="avatar" title='evk3 - Original Poster, Most Recent Poster' aria-label='evk3 - Original Poster, Most Recent Poster'> </a> <a href="https://virological.org/u/pvh" class=""> <img width="25" height="25" src="/user_avatar/virological.org/pvh/25/806_2.png" class="avatar" title='pvh - Frequent Poster' aria-label='pvh - Frequent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>2</span> </td> <td class="views"> <span class='views' title='views'>9987</span> </td> <td> December 9, 2022 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='10'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/preliminary-genomic-analysis-of-the-rsv-surge-2022-in-massachusetts-reveals-a-polyphyletic-epidemic-driven-by-the-expansion-of-multiple-lineages/914' class='title raw-link raw-topic-link'>Preliminary Genomic Analysis of the RSV Surge 2022 in Massachusetts Reveals a Polyphyletic Epidemic Driven by the Expansion of Multiple Lineages</a> </span> <div class="link-bottom-line"> <a href='/c/rsv/54' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #BF1E2E'></span> <span class='badge-category clear-badge'> <span class='category-name'>RSV</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/lemieux" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/l/46a35a/25.png" class="avatar" title='lemieux - Original Poster, Most Recent Poster' aria-label='lemieux - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>12980</span> </td> <td> December 1, 2022 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='11'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/issue-with-pipelines-using-bcftools-to-calling-consensus-in-low-coverage-regions/905' class='title raw-link raw-topic-link'>Issue with pipelines using bcftools to calling consensus in low-coverage regions</a> </span> <div class="link-bottom-line"> <a href='/c/novel-2019-coronavirus/software-and-tools/42' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #F7941D'></span> <span class='badge-category clear-badge'> <span class='category-name'>Software and Tools</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/gkarthik" class=""> <img width="25" height="25" src="/user_avatar/virological.org/gkarthik/25/1271_2.png" class="avatar" title='gkarthik - Original Poster' aria-label='gkarthik - Original Poster'> </a> <a href="https://virological.org/u/Kristian_Andersen" class="latest"> <img width="25" height="25" src="/user_avatar/virological.org/kristian_andersen/25/521_2.png" class="avatar" title='Kristian_Andersen - Most Recent Poster' aria-label='Kristian_Andersen - Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>1</span> </td> <td class="views"> <span class='views' title='views'>7081</span> </td> <td> October 19, 2022 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='12'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/monkeypox-virus-in-canada-the-first-four-months/904' class='title raw-link raw-topic-link'>Monkeypox virus in Canada: the first four months</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/genome-reports/47' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #25AAE2'></span> <span class='badge-category clear-badge'> <span class='category-name'>Genome Reports</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/atduggan" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/a/ac91a4/25.png" class="avatar" title='atduggan - Original Poster, Most Recent Poster' aria-label='atduggan - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' 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title='views'>10396</span> </td> <td> August 22, 2022 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='16'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/draft-genome-of-the-first-case-of-the-monkeypox-virus-in-chile-associated-with-the-2022-outbreak/887' class='title raw-link raw-topic-link'>Draft genome of the first case of the Monkeypox virus in Chile associated with the 2022 outbreak</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/genome-reports/47' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #25AAE2'></span> <span class='badge-category clear-badge'> <span class='category-name'>Genome Reports</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/PauloC" class="latest single"> <img width="25" height="25" 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href='https://virological.org/t/a-draft-of-the-first-genome-sequence-of-monkeypox-virus-associated-with-the-multi-country-outbreak-in-may-2022-from-the-canary-islands-spain/864' class='title raw-link raw-topic-link'>A draft of the first genome sequence of Monkeypox virus associated with the multi-country outbreak in May 2022 from the Canary Islands, Spain</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/genome-reports/47' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #25AAE2'></span> <span class='badge-category clear-badge'> <span class='category-name'>Genome Reports</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/jlorsal" class="latest"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/j/c2a13f/25.png" class="avatar" title='jlorsal - Original Poster, Most Recent Poster' aria-label='jlorsal - Original Poster, Most Recent Poster'> </a> <a 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class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='24'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/urgent-need-for-a-non-discriminatory-and-non-stigmatizing-nomenclature-for-monkeypox-virus/853' class='title raw-link raw-topic-link'>Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/46' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #0088CC'></span> <span class='badge-category clear-badge'> <span class='category-name'>MPXV</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/happic" class=""> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/h/ecccb3/25.png" class="avatar" title='happic - Original Poster' aria-label='happic - Original Poster'> </a> <a 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raw-topic-link'>Two draft Canadian monkeypox virus (MPXV) genomes, June 2022</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/genome-reports/47' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #25AAE2'></span> <span class='badge-category clear-badge'> <span class='category-name'>Genome Reports</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/mcroxen" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/m/cab0a1/25.png" class="avatar" title='mcroxen - Original Poster, Most Recent Poster' aria-label='mcroxen - Original Poster, Most Recent Poster'> </a> </td> <td class="replies"> <span class='posts' title='posts'>0</span> </td> <td class="views"> <span class='views' title='views'>5686</span> </td> <td> June 21, 2022 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='26'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/minion-produced-illumina-confirmed-genomes-of-the-two-first-isolated-cases-from-france/868' class='title raw-link raw-topic-link'>MinIon-produced Illumina-confirmed genomes of the two first isolated cases from France</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/genome-reports/47' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #25AAE2'></span> <span class='badge-category clear-badge'> <span class='category-name'>Genome Reports</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/Ogorge" class="latest single"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/o/f9ae1b/25.png" class="avatar" title='Ogorge - Original Poster, Most Recent Poster' aria-label='Ogorge - Original Poster, Most Recent 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title='views'>4309</span> </td> <td> June 13, 2022 </td> </tr> <tr class="topic-list-item"> <td class="main-link" itemprop='itemListElement' itemscope itemtype='http://schema.org/ListItem'> <meta itemprop='position' content='30'> <span class="link-top-line"> <a itemprop='url' href='https://virological.org/t/first-french-draft-genome-sequence-of-monkeypox-virus-may-2022/819' class='title raw-link raw-topic-link'>First French draft genome sequence of Monkeypox virus, may 2022</a> </span> <div class="link-bottom-line"> <a href='/c/mpxv/genome-reports/47' class='badge-wrapper bullet'> <span class='badge-category-bg' style='background-color: #25AAE2'></span> <span class='badge-category clear-badge'> <span class='category-name'>Genome Reports</span> </span> </a> <div class="discourse-tags"> </div> </div> </td> <td class='posters'> <a href="https://virological.org/u/guillaume_croville" class="latest"> <img width="25" height="25" src="/letter_avatar_proxy/v4/letter/g/9de0a6/25.png" 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