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<!DOCTYPE html> <html lang="en"> <head> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="description" content="wwPDB: Worldwide Protein Data Bank"> <meta name="author" content="wwPDB.org"> <link rel="shortcut icon" href="/favicon.ico"> <link href="/css/bootstrap-v3.1.1.min.css" rel="stylesheet"> <link href="/tools/font-awesome-4.4.0/css/font-awesome.min.css" rel="stylesheet"> <link href="/css/wwPDB.css?v=4" rel="stylesheet"> <link href='https://fonts.googleapis.com/css?family=Exo+2:600' rel='stylesheet' type='text/css'> <link href='https://fonts.googleapis.com/css?family=Roboto:300, 400,500,700' rel='stylesheet' type='text/css'> <link href='https://fonts.googleapis.com/css?family=Petit+Formal+Script' rel='stylesheet' type='text/css'>  <script async src="https://www.googletagmanager.com/gtag/js?id=G-5ED0CQCXV6"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new 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href='/about/contact' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Contact Us</a></li> <li ><a href='/about/cite-us' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Cite Us</a></li> <li class='active'><a href='/about/publications' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Publications</a></li> <li ><a href='/about/advisory' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Advisory Committee</a></li> <li ><a href='/about/agreement' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Agreement</a></li> <li ><a href='/about/outreach' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Outreach</a></li> <li ><a href='/about/faq' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> FAQ</a></li> <li ><a href='/about/privacy' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Privacy</a></li> <li ><a href='/about/usage-policies' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Usage Policies</a></li> <li ><a href='/pdb50' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> PDB50</a></li> </ul> </div> <div class="col-md-9"> <div class="wwpdb-content">  <h1>wwPDB Publications</h1><h4>2024</h4> <ul> <li>Preeti Choudhary, Zukang Feng, John Berrisford, Henry Chao, Yasuyo Ikegawa, Ezra Peisach, Dennis W. Piehl, James Smith, Ahsan Tanweer, Mihaly Varadi, John D. Westbrook, Jasmine Y. Young, Ardan Patwardhan, Kyle L. Morris, Jeffrey C. Hoch, Genji Kurisu, Sameer Velankar, Stephen K. Burley; PDB NextGen Archive: Centralising Access to Integrated Annotations and Enriched Structural Information by the Worldwide Protein Data Bank. <i>Database</i> (2024): baae041 doi: <a href='http://doi.org/10.1093/database/baae041' target='_blank'>10.1093/database/baae041</a></li> <li>Baskaran K, Ploskon E, Tejero R, Yokochi M, Harrus D, Liang Y, Peisach E, Persikova I, Ramelot TA, Sekharan M, Tolchard J, Westbrook JD, Bardiaux B, Schwieters CD, Patwardhan A, Velankar S, Burley SK, Kurisu G, Hoch JC, Montelione GT, Vuister GW, Young JY. Restraint validation of biomolecular structures determined by NMR in the Protein Data Bank. <i>Structure</i> (2024) PMID: 38490206. doi: <a href='http://doi.org/10.1016/j.str.2024.02.011' target='_blank'>10.1016/j.str.2024.02.011</a></li> <li>Sebastian Bittrich, Adam Midlik, Mihaly Varadi, Sameer Velankar, Stephen K. Burley, Jasmine Y. Young, David Sehnal, Brinda Vallat. Describing and Sharing Molecular Visualizations Using the MolViewSpec Toolkit. <i>CURRENT PROTOCOLS</i> (2024). doi: <a href='http://doi.org/10.1002/cpz1.1099' target='_blank'>10.1002/cpz1.1099</a></li> </ul> <h4>2023</h4> <ul> <li>The wwPDB Consortium (2023) EMDB- the Electron Microscopy Data Bank <i>Nucleic Acids Research</i> gkad1019 doi: <a href='http://doi.org/10.1093/nar/gkad1019' target='_blank'>10.1093/nar/gkad1019</a></li> <li>Preeti Choudhary, Zukang Feng, John Berrisford, Henry Chao, Yasuyo Ikegawa, Ezra Peisach, Dennis W. Piehl, James Smith, Ahsan Tanweer, Mihaly Varadi, John D. Westbrook, Jasmine Y. Young, Ardan Patwardhan, Kyle L. Morris, Jeffrey C. Hoch, Genji Kurisu, Sameer Velankar, Stephen K. Burley; PDB NextGen Archive: Centralising Access to Integrated Annotations and Enriched Structural Information by the Worldwide Protein Data Bank (2023) <i>bioRxiv</i> doi: <a href='http://doi.org/10.1101/2023.10.24.563739' target='_blank'>10.1101/2023.10.24.563739</a></li> <li>Gerard J. Kleywegt, Paul D. Adams, Sarah J. Butcher, Cathy Lawson, Alexis Rohou, Peter B. Rosenthal, Sriram Subramaniam, Maya Topf, Sanja Abbott, Philip R. Baldwin, John M. Berrisford, Gérard Bricogne, Preeti Choudhary, Tristan I. Croll, Radostin Danev, Sai J. Ganesan, Timothy Grant, Aleksandras Gutmanas, Richard Henderson, J. Bernard Heymann, Juha T. Huiskonen, Andrei Istrate, Takayuki Kato, Gabriel C. Lander, Shee-Mei Lok, Steven J. Ludtke, Garib N. Murshudov, Ryan Pye, Grigore D. Pintilie, Jane S. Richardson, Carsten Sachse, Osman Salih, Sjors H.W. Scheres, Gunnar F. Schroeder, Carlos Oscar S. Sorzano, Scott M. Stagg, Zhe Wang, Rangana Warshamanage, John D. Westbrook, Martyn D. Winn, Jasmine Y. Young, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar (2024) Community recommendations on cryoEM data archiving and validation. <i>IUCrJ</i> doi: <a href='http://doi.org/10.1107/S2052252524001246' target='_blank'>10.1107/S2052252524001246</a></li> <li>Wenqing Xu, Sameer Velankar, Ardan Patwardhan, Jeffrey C. Hoch, Stephen K. Burley, Genji Kurisu. (2023) Announcing launch of Protein Data Bank China (PDBc) as an Associate Member of the Worldwide Protein Data Bank (wwPDB) <i>Partnership Acta Cryst. D</i> doi: <a href='http://doi.org/10.1107/S2059798323006381' target='_blank'>10.1107/S2059798323006381</a></li> </ul> <h4>2022</h4> <ul> <li>John D. Westbrook, Jasmine Y. Young, Chenghua Shao, Zukang Feng, Vladimir Guranovic, Catherine L. Lawson, Brinda Vallat, Paul D. Adams, John M Berrisford, Gerard Bricogne, Kay Diederichs, Robbie P. Joosten, Peter Keller, Nigel W. Moriarty, Oleg V. Sobolev, Sameer Velankar, Clemens Vonrhein, David G. Waterman, Genji Kurisu, Helen M. Berman, Stephen K. Burley, Ezra Peisach. (2022) PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology. <i>JMB</i> doi: <a href='http://doi.org/10.1016/j.jmb.2022.167599' target='_blank'>10.1016/j.jmb.2022.167599</a></li> </ul> <h4>2021</h4> <ul> <li>Chenghua Shao, Zukang Feng, John D Westbrook, Ezra Peisach,John Berrisford, Yasuyo Ikegawa, Genji Kurisu, Sameer Velankar,Stephen K Burley and Jasmine Y Young. (2021) Modernized uniform representation of carbohydrate molecules in the Protein Data Bank. <i>Glycobiology</i> 1–15: doi: <a href='http://doi.org/10.1093/glycob/cwab039' target='_blank'>10.1093/glycob/cwab039</a></li> <li>Jasmine Y. Young, John Berrisford & Minyu Chen. (2021) wwPDB biocuration: on the front line of structural biology. <i>Nature Methods</i> 18: 431–432 doi: <a href='http://doi.org/10.1038/s41592-021-01137-z' target='_blank'>10.1038/s41592-021-01137-z</a></li> <li>Zukang Feng, John D. Westbrook, Raul Sala, Oliver S. Smart, Gérard Bricogne, Masaaki Matsubara, Issaku Yamada, Shinichiro Tsuchiya, Kiyoko F. Aoki-Kinoshita, Jeffrey C. Hoch, Genji Kurisu, Sameer Velankar, Stephen K. Burley and Jasmine Y. Young. (2021) Enhanced Validation of Small-Molecule Ligands and Carbohydrates in the Protein Data Bank. <i>Structure</i> doi: <a href='http://doi.org/10.1016/j.str.2021.02.004' target='_blank'>10.1016/j.str.2021.02.004</a></li> </ul> <h4>2019</h4> <ul> <li>Paul D. Adams, Pavel V. Afonine, Kumaran Baskaran, Helen M. Berman, John Berrisford, Gerard Bricogne, David G. Brown, Stephen K. Burley, Minyu Chen, Zukang Feng, Claus Flensburg, Aleksandras Gutmanas, Jeffrey C. Hoch, Yasuyo Ikegawa, Yumiko Kengaku, Eugene Krissinel,l Genji Kurisu, Yuhe Liang, Dorothee Liebschner, Lora Mak, John L. Markley, Nigel W. Moriarty, Garib N. Murshudov, Martin Noble, Ezra Peisach, Irina Persikova, Billy K. Poon, Oleg V. Sobolev, Eldon L. Ulrich, Sameer Velankar, Clemens Vonrhein, John Westbrook, Marcin Wojdyr, Masashi Yokochij and Jasmine Y. Young. Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB) (2019) Volume 75, Pages 451-454 doi: <a href='http://doi.org/10.1107/S2059798319004522' target='_blank'>10.1107/S2059798319004522</a></li> </ul> <h4>2018</h4> <ul> <li>wwPDB consortium (2018) Protein Data Bank: the single global archive for 3D macromolecular structure data <i>Nucleic Acids Research</i>: gky949 doi: <a href='http://doi.org/10.1093/nar/gky949' target='_blank'>10.1093/nar/gky949</a></li> <li>J.Y. Young, J. D. Westbrook, Z. Feng, E. Peisach, I. Persikova, R. Sala, S. Sen, J. M. Berrisford, G. J. Swaminathan, T. J. Oldfield, A. Gutmanas, R. Igarashi, D. R. Armstrong, K. Baskaran, L. Chen, M. Chen, A. R. Clark, L. D. Costanzo, D. Dimitropoulos, G. Gao, S. Ghosh, S. Gore, V. Guranovic, P. M. S. Hendrickx, B. P. Hudson, Y. Ikegawa, Y. Kengaku, C. L. Lawson, Y. Liang, L. Mak, A. Mukhopadhyay, B. Narayanan, K. Nishiyama, A. Patwardhan, G. Sahni, E. Sanz-García, J. Sato, M. R. Sekharan, C. Shao, O. S. Smart, L. Tan, G. v. Ginkel, H. Yang, M. A. Zhuravleva, J. L. Markley, H. Nakamura, G. Kurisu, G. J. Kleywegt, S. Velankar, H. M. Berman, S. K. Burley (2018) Worldwide Protein Data Bank biocuration supporting open sccess to high-quality 3D structural biology data <i>Database</i> 2018: bay002 doi: <a href='http://doi.org/10.1093/database/bay002' target='_blank'>10.1093/database/bay002</a></li> </ul> <h4>2017</h4> <ul> <li>S. Gore, E. Sanz Garcia, P. M. S. Hendrickx, A. Gutmanas, J. D. Westbrook, H. Yang, Z. Feng, K. Baskaran, J. M. Berrisford, B. P. Hudson, Y. Ikegawa, N. Kobayashi, C. L. Lawson, S. Mading, L. Mak, A. Mukhopadhyay, T. J. Oldfield, A. Patwardhan, E. Peisach, G. Sahni, M. R. Sekharan, S. Sen, C. Shao, O. S. Smart, E. L. Ulrich, R. Yamashita, M. Quesada, J. Y. Young, H. Nakamura, J. L. Markley, H. M. Berman, S. K. Burley, S. Velankar, G. J. Kleywegt. (2017) Validation of the Structures in the Protein Data Bank. <i>Structure</i> 25: 1916-1927 doi: <a href='http://doi.org/10.1016/j.str.2017.10.009' target='_blank'>10.1016/j.str.2017.10.009</a></li> <li>S. K. Burley, G. Kurisu, J. L. Markley, H. Nakamura, S. Velankar, H. M. Berman, A. Sali, T. Schwede, J. Trewhella. (2017) PDB-Dev: A prototype system for depositing integrative/hybrid structural models. <i>Structure</i> 25: 1317-1318 doi: <a href='http://doi.org/10.1016/j.str.2017.08.001' target='_blank'>10.1016/j.str.2017.08.001</a></li> <li>S. K. Burley, H. M. Berman, G. J. Kleywegt, J. L. Markley, H. Nakamura, S. Velankar. (2017) Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive In <i>Methods in Molecular Biology: Protein Crystallography Methods and Protocols</i> (eds. A. Wlodawer, Z. Dauter, M. Jaskolski) Springer New York doi: <a href='http://doi.org/ 10.1007/978-1-4939-7000-1' target='_blank'> 10.1007/978-1-4939-7000-1</a></li> <li>J. Young, J. D. Westbrook, Z. Feng, R. Sala, E. Peisach, T. J. Oldfield, S. Sen, A. Gutmanas, D. R. Armstrong, J. M. Berrisford, L. Chen, M. Chen, L. Di Costanzo, D. Dimitropoulos, G. Gao, S. Ghosh, S. Gore, V. Guranovic, P. M. S. Hendrickx, B. P. Hudson, R. Igarashi, Y. Ikegawa, N. Kobayashi, C. L. Lawson, Y. Liang, S. Mading, L. Mak, M. S. Mir, A. Mukhopadhyay, A. Patwardhan, I. Persikova, L. Rinaldi, E. Sanz-Garcia, M. R. Sekharan, C. Shao, G. J. Swaminathan, L. Tan, E. L. Ulrich, G. Van Ginkel, R. Yamashita, H. Yang, M. A. Zhuravleva, M. Quesada, G. J. Kleywegt, H. M. Berman, J. L. Markley, H. Nakamura, S. Velankar, S. K. Burley. (2017) OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the Protein Data Bank (PDB) Archive. <i>Structure</i> <b>25</b>: 536-545 doi: <a href='http://doi.org/10.1016/j.str.2017.01.004' target='_blank'>10.1016/j.str.2017.01.004</a></li> <li>The Global Life Sciences Data Resources (GLSDR) Working Group: W. Anderson, R. Apweiler, A. Bateman, G.A. Bauer, H. Berman, J.A. Blake, N. Blomberg, S.K. Burley, G. Cochrane, V. Di Francesco, T. Donohue, C. Durinx, A. Game, E.D. Green, T. Gojobori, P. Goodhand, A. Hamosh, H. Hermjakob, M. Kanehisa, R. Kiley, J. McEntyre, R. McKibbin, S. Miyano, B. Pauly, N. Perrimon, M.A. Ragan, G. Richards, Y-Y. Teo, M. Westerfield, E. Westhof, P.F. Lasko (2017) Data management: A global coalition to sustain core data <i>Nature</i> <b>543</b>: 179 doi: <a href='http://doi.org/10.1038/543179a' target='_blank'>10.1038/543179a</a></li> <li>W. Anderson, R. Apweiler, A. Bateman, G.A. Bauer, H. Berman, J.A. Blake, N. Blomberg, S.K. Burley, G. Cochrane, V. Di Francesco, T. Donohue, C. Durinx, A. Game, E.D. Green, T. Gojobori, P. Goodhand, A. Hamosh, H. Hermjakob, M. Kanehisa, R. Kiley, J. McEntyre, R. McKibbin, S. Miyano, B. Pauly, N. Perrimon, M.A. Ragan, G. Richards, Y-Y. Teo, M. Westerfield, E. Westhof, P.F. Lasko (2017) Towards coordinated international support of core data resources for the life sciences <i>bioRxiv</i> doi: <a href='http://doi.org/10.1101/110825' target='_blank'>10.1101/110825</a></li> </ul> <h4>2016</h4> <ul> <li>H. M. Berman, S. K. Burley, G. J. Kleywegt, J. L. Markley, H. Nakamura, S. Velankar. (2016) The archiving and dissemination of biological structure data. <i>Curr Opin Struct Biol</i> <b>40</b>: 17-22 doi: <a href='http://doi.org/10.1016/j.sbi.2016.06.018' target='_blank'>10.1016/j.sbi.2016.06.018</a></li> <li>P. D. Adams, K. Aertgeerts, C. Bauer, J. A. Bell, H. M. Berman, T. N. Bhat, J. M. Blaney, E. Bolton, G. Bricogne, D. Brown, S. K. Burley, D. A. Case, K. L. Clark, T. Darden, P. Emsley, V. A. Feher, Z. Feng, C. R. Groom, S. F. Harris, J. Hendle, T. Holder, A. Joachimiak, G. J. Kleywegt, T. Krojer, J. Marcotrigiano, A. E. Mark, J. L. Markley, M. Miller, W. Minor, G. T. Montelione, G. Murshudov, A. Nakagawa, H. Nakamura, A. Nicholls, M. Nicklaus, R. T. Nolte, A. K. Padyana, C. E. Peishoff, S. Pieniazek, R. J. Read, C. Shao, S. Sheriff, O. Smart, S. Soisson, J. Spurlino, T. Stouch, R. Svobodova, W. Tempel, T. C. Terwilliger, D. Tronrud, S. Velankar, S. C. Ward, G. L. Warren, J. D. Westbrook, P. Williams, H. Yang, J. Young. (2016) Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. <i>Structure</i> <b>24</b>: 502-508 doi: <a href='http://doi.org/10.1016/j.str.2016.02.017' target='_blank'>10.1016/j.str.2016.02.017</a></li> </ul> <h4>2015</h4> <ul> <li>A. Sali, T. Schwede, J. Trewhella, H. M. Berman, G. Kleywegt, S. K. Burley, J. Markley, H. Nakamura, P. D. Adams, A. Bonvin, W. Chiu, M. Dal Peraro, F. Di Maio, T. E. Ferrin, K. Grunewald, A. Gutmanas, R. Henderson, G. Hummer, K. Iwasaki, G. Johnson, C. L. Lawson, J. Meiler, M. A. Marti-Renom, G. T. Montelione, M. Nilges, R. Nussinov, A. Patwardhan, J. Rappsilber, R. J. Read, H. Saibil, G. F. Schroder, C. Schwieters, C. A. M. Seidel, D. Svergun, M. Topf, E. Ulrich, S. Velankar, J. Westbrook (2015) Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop <i>Structure</i> <b>23</b>: 1156—1167 doi: <a href='http://doi.org/10.1016/j.str.2015.05.013' target='_blank'>10.1016/j.str.2015.05.013</a></li> <li>A. Gutmanas, P.D. Adams, B. Bardiaux, H.M. Berman, D.A. Case, R.H. Fogh, P. Güntert, P.M.S. Hendrickx, T. Herrmann, G.J. Kleywegt, N. Kobayashi, O.F. Lange, J.L. Markley, G.T. Montelione, M. Nilges, T.J. Ragan, C.D. Schwieters, R. Tejero, E.L. Ulrich, S. Velankar, W.F. Vranken, J.R. Wedell, J. Westbrook, D.S. Wishart, G.W. Vuister (2015) NMR Exchange Format: a unified and open standard for representation of NMR restraint data <i>Nature Structural & Molecular Biology</i> <b>22:</b> 433—434 doi: <a href='http://doi.org/10.1038/nsmb.3041' target='_blank'>10.1038/nsmb.3041</a></li> </ul> <h4>2014</h4> <ul> <li>J.D. Westbrook, C. Shao, Z. Feng, M. Zhuravleva, S. Velankar, J. Young (2014) The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank <i>Bioinformatics</i> doi: <a href='http://doi.org/10.1093/bioinformatics/btu789' target='_blank'>10.1093/bioinformatics/btu789</a></li> <li>S. Sen, J. Young, J. M. Berrisford, M. Chen, M. J. Conroy, S. Dutta, L. Di Costanzo, G. Gao, S. Ghosh, B. P. Hudson, R. Igarashi, Y. Kengaku, Y. Liang, E. Peisach, I. Persikova, A. Mukhopadhyay, B. C. Narayanan, G. Sahni, J. Sato, M. Sekharan, C. Shao, L. Tan, M. A. Zhuravleva (2014) Small molecule annotation for the Protein Data Bank doi: <a href='http://doi.org/10.1093/database/bau116' target='_blank'>10.1093/database/bau116</a></li> <li>H. Berman, S. K. Burley, G. J. Kleywegt, H. Nakamura and J. L. Markley (2014) Response to "On prompt update of literature references in the Protein Data Bank" <i>Acta Cryst</i> <b>D 70:</b> 2780. doi: <a href='http://doi.org/10.1107/S1399004714020513' target='_blank'>10.1107/S1399004714020513</a></li> <li>H. Berman, G. J. Kleywegt, H. Nakamura and J. L. Markley (2014) The Protein Data Bank archive as an open data resource <i>Journal of Computer-Aided Molecular Design</i>. doi: <a href='http://doi.org/10.1007/s10822-014-9770-y' target='_blank'>10.1007/s10822-014-9770-y</a></li> <li>S. Dutta, D. Dimitropoulos, Z. Feng, I. Persikova, S. Sen, C. Shao, J. Westbrook, J. Young, M.A. Zhuravleva, G.J. Kleywegt, H.M. Berman (2014) Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank <i>Biopolymers</i> <b>101</b>:659-668 doi: <a href='http://doi.org/10.1002/bip.22434' target='_blank'>10.1002/bip.22434</a></li> </ul> <h4>2013</h4> <ul> <li>H. Berman, G. J. Kleywegt, H. Nakamura and J. L. Markley (2013) Comment on On the propagation of errors by Jaskolski (2013) <i>Acta Cryst.</i> <b>D69</b>: 2297. doi: <a href='http://doi.org/10.1107/S090744491302917X' target='_blank'>10.1107/S090744491302917X</a></li> <li>H. Berman, G. J. Kleywegt, H. Nakamura and J. L. Markley. (2013) Comment on Timely deposition of macromolecular structures is necessary for peer review by Joosten et al. (2013) <i>Acta Cryst.</i> <b>D69</b>: 2296. doi: <a href='http://doi.org/10.1107/S0907444913029168' target='_blank'>10.1107/S0907444913029168</a></li> <li>H. M. Berman, G. J. Kleywegt, H. Nakamura, J. L. Markley. (2013) How community has shaped the Protein Data Bank <i>Structure</i> <b>21</b>: 1485-1491 doi: <a href='http://doi.org/10.1016/j.str.2013.07.010' target='_blank'>10.1016/j.str.2013.07.010</a></li> <li>H. M. Berman, G. J. Kleywegt, H. Nakamura, J. L. Markley. (2013) The future of the protein data bank.</a> <i>Biopolymers </i><b>99</b>: 218-222. doi: <a href='http://doi.org/10.1002/bip.22132' target='_blank'>10.1002/bip.22132</a></li> </ul> <h4>2012</h4> <ul> <li>H.M. Berman, K. Henrick, G. Kleywegt, H. Nakamura, J. Markley (2012) The Worldwide Protein Data Bank. In <i>International Tables for X-Ray Crystallography</i> (eds. E. Arnold, D.M. Himmel, M.G. Rossmann) Volume F: Crystallography of biological macromolecules, Springer, Dordrecht, The Netherlands, ch. 24.1, pp. 827-832 doi: <a href='http://doi.org/10.1107/97809553602060000896.' target='_blank'>10.1107/97809553602060000896.</a></li> <li>H. M. Berman, G. J. Kleywegt, H. Nakamura, J. L. Markley. (2012) The Protein Data Bank at 40: Reflecting on the Past to Prepare for the Future. <i>Structure</i> <b>20</b>: 391-396. doi: <a href='http://doi.org/10.1016/j.str.2012.01.010' target='_blank'>10.1016/j.str.2012.01.010</a></li> </ul> <h4>2010</h4> <ul> <li>H. M. Berman, G. J. Kleywegt, H. Nakamura, J. L. Markley, S. K. Burley. (2010) Safeguarding the integrity of protein archive. <i>Nature</i> <b>463</b>: 425. doi: <a href='http://doi.org/10.1038/463425c' target='_blank'>10.1038/463425c</a></li> </ul> <h4>2009</h4> <ul> <li>S. Dutta, K. Burkhardt, J. Young, G. J. Swaminathan, T. Matsuura, K. Henrick, H. Nakamura, H. M. Berman. (2009) Data deposition and annotation at the worldwide Protein Data Bank. <i>Mol Biotechnol</i> <b>42</b>: 1-13. doi: <a href='http://doi.org/10.1007/s12033-008-9127-7' target='_blank'>10.1007/s12033-008-9127-7</a></li> <li>H. M. Berman, K. Henrick, H. Nakamura, J. L. Markley. (2009). Chapter 11 The Worldwide Protein Data Bank. In <i>Structural Bioinformatics, Second Edition</i> (J. Gu & P. E. Bourne, eds.), pp. 293-303. John Wiley & Sons, Inc., Hoboken, NJ.</li> </ul> <h4>2008</h4> <ul> <li>J. L. Markley, E. L. Ulrich, H. M. Berman, K. Henrick, H. Nakamura, H. Akutsu. (2008) BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions. <i>J Biomol NMR</i> <b>40</b>: 153-155. doi: <a href='http://doi.org/10.1007/s10858-008-9221-y' target='_blank'>10.1007/s10858-008-9221-y</a></li> <li>C. L. Lawson, S. Dutta, J. D. Westbrook, K. Henrick, H. M. Berman. (2008) Representation of viruses in the remediated PDB archive. <i>Acta Cryst.</i> <b>D64</b>: 874-882. doi: <a href='http://doi.org/10.1107/S0907444908017393' target='_blank'>10.1107/S0907444908017393</a></li> <li>K. Henrick, Z. Feng, W. F. Bluhm, D. Dimitropoulos, J. F. Doreleijers, S. Dutta, J. L. Flippen-Anderson, J. Ionides, C. Kamada, E. Krissinel, C. L. Lawson, J. L. Markley, H. Nakamura, R. Newman, Y. Shimizu, J. Swaminathan, S. Velankar, J. Ory, E. L. Ulrich, W. Vranken, J. Westbrook, R. Yamashita, H. Yang, J. Young, M. Yousufuddin, H. M. Berman. (2008) Remediation of the Protein Data Bank Archive. <i>Nucleic Acids Res</i> <b>36</b>: D426-D433. doi: <a href='http://doi.org/10.1093/nar/gkm937' target='_blank'>10.1093/nar/gkm937</a></li> <li>S. Dutta, K. Burkhardt, G. J. Swaminathan, T. Kosada, K. Henrick, H. Nakamura, H. M. Berman. (2008). Data deposition and annotation at the Worldwide Protein Data Bank. In <i>Methods in Molecular Biology</i> (B. Kobe, M. Guss & T. Huber, eds.), Vol. 426: Structural Proteomics: High-Throughput Methods, pp. 81-101. Humana Press, Totowa, NJ.</li> </ul> <h4>2007</h4> <ul> <li>H. M. Berman, K. Henrick, H. Nakamura, J. L. Markley. (2007) The Worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data. <i>Nucleic Acids Res</i> <b>35</b>: D301-303. doi: <a href='http://doi.org/10.1093/nar/gkl971' target='_blank'>10.1093/nar/gkl971</a></li> <li>H. Berman, K. Henrick, H. Nakamura, J. Markley, P. Bourne, J. Westbrook. (2007) Realism about PDB. <i>Nature Biotechnology</i> <b>25</b>: 845-846. doi: <a href='http://doi.org/10.1038/nbt0807-845' target='_blank'>10.1038/nbt0807-845</a></li> </ul> <h4>2006</h4> <ul> <li>H. M. Berman, K. Henrick, H. Nakamura, E. Arnold. (2006) Is one solution good enough? (response). <i>Nature Structural & Molecular Biology</i> <b>13</b>: 185.</li> </ul> <h4>2005</h4> <ul> <li>K. Henrick, H. M. Berman, H. Nakamura. (2005). The Protein Data Bank and the wwPDB. In <i>Encyclopedia of Genomics, Proteomics, and Bioinformatics</i> (L. B. Jorde, P. F. R. Little, M. J. Dunn & S. Subramaniam, eds.), Vol. 7, pp. 3335-3339. John Wiley & Sons Ltd, Chichester.</li> </ul> <h4>2003</h4> <ul> <li>H. M. Berman, K. Henrick, H. Nakamura. (2003) Announcing the worldwide Protein Data Bank. <i>Nat Struct Biol</i> <b>10</b>: 980. doi: <a href='http://doi.org/10.1038/nsb1203-980' target='_blank'>10.1038/nsb1203-980</a></li> </ul>  </div> </div> </div> <br> <footer class="footer"> <div class="container-fluid hidden-print" style="position: relative;"> <div class="row topFooter tinyPad"> <div class="ScreenLimitFooter"> <div class="col-sm-4"> <div class="smallMarginTop"> <a href="https://www.facebook.com/pages/Worldwide-PDB/223648640998643" target="_blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/facebook.png" width="24" height="24"></a> <a href="https://www.youtube.com/channel/UCgM7zpapumhWHDMV11FIz0Q" target="_blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/youtube-logo.png" width="24" height="24"></a> <a href="#"><img alt="RSS Feed for the Latest News" src="https://cdn.rcsb.org/wwpdb/img/core/rss.png" width="24" height="24"></a> <a href="mailto: info@wwpdb.org"><img src="https://cdn.rcsb.org/wwpdb/img/core/mail.png" width="24" height="24"></a> </div> <div class="smallMarginTop"> <a href="/news/news.php"> <p><a href="/news/news.php">News & Announcements</a></p> </a> </div> <div> <p><a href="https://lists.wwpdb.org/list/pdb-l.lists.wwpdb.org">Community Bulletin Board</a></p> </div> <div><a class='brand hidden-desktop' href='http://foundation.wwpdb.org/' target='_blank'><img src="https://cdn.rcsb.org/wwpdb/img/core/wwpdb-foundation-logo.png" class="logoLimit smallMarginTop"></a></div> </div> <div class="col-sm-4"> <div class="tinyMarginTop"> <h4><a class="h4-link" href="/download/downloads.php">Download Archive</a></h4> </div> <div class="smallMarginTop"> <a href="https://files.wwpdb.org/pub/pdb/">RCSB PDB</a> | <a href="https://ftp.ebi.ac.uk/pub/databases/pdb/">PDBe</a> | <a href="https://ftp.pdbj.org/pub/pdb/">PDBj</a> <br> <a href="/download/downloads.php">Instructions</a> </div> <div class="row"> <div class="col-sm-4"> <div class="tinyMarginTop"> <h4>Archive Snapshots</h4> </div> <div class="smallMarginTop"> <a href="https://s3snapshots.rcsb.org">RCSB PDB (https)</a> | <a href="ftp://snapshots.pdbj.org/">PDBj</a> </div> </div>  </div> </div> <div class="col-sm-3"> <h4> Cite wwPDB: </h4> <div class="smallMarginTop"> <em>Nature Structural Biology</em> <strong>10</strong>, 980 (2003)<br> <a href="http://dx.doi.org/10.1038/nsb1203-980" target="_blank">doi: 10.1038/nsb1203-980</a> <p class="tinyMarginTop"><a href="/about/publications.php">More publications</a></p> </div> </div> <div class="row" style="padding: 40px 0px 10px 10px"> <div class="col-sm-7"> <div class="tinyPad"> <h4>wwPDB Members:</h4> </div> <div class="col-sm-2 tinyPad"><a href="https://www.rcsb.org/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/rcsb-pdb.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.ebi.ac.uk/pdbe/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/pdbe.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.pdbj.org/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/pdbj.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.ebi.ac.uk/pdbe/emdb/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/emdb.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="http://bmrb.io/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/bmrb.png" class="logoLimit img-responsive"></a></div> </div> <div class="col-sm-1"><br></br></div> <div class="col-sm-4"> <div class="row"> <div class="col-xs-6"> <a href='http://www.CoreTrustSeal.org' target='_blank'><img src="https://cdn.rcsb.org/wwpdb/img/homepage/CoreTrustSeal-logo-transparent-small.png" class='img-responsive seal' style="border-right: 1px solid #666; padding-right: 50px"/></a> </div> <div class="col-xs-6"> <a href='https://globalbiodata.org/' target='_blank'><img src="https://cdn.rcsb.org/wwpdb/img/homepage/GCBR-Logo-RGB.png" class='img-responsive seal'/></a> </div> </div> </div> </div> </div> <div class="row bottomFooter"> © wwPDB </div> </div> </footer>  <script type="text/javascript" src="/js/jquery-2.1.0.min.js"></script> <script type="text/javascript" src="/js/bootstrap-3.1.1.min.js"></script> <script type="text/javascript" src="/js/NavbarControl.js?v2"></script> <script> (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); ga('create', 'UA-62256915-1', 'auto'); ga('send', 'pageview'); </script> </body> </html>