Presentations

<!DOCTYPE html> <html> <head> <title>Presentations</title> <meta charset="utf-8" /> <meta name="viewport" content="width=device-width, initial-scale=1, maximum-scale=3" /> <meta content="ImageJ Wiki" property="og:site_name"> <meta content="Presentations" property="og:title"> <meta content="article" property="og:type"> <meta content="The ImageJ wiki is a community-edited knowledge base on topics relating to ImageJ, a public domain program for processing and analyzing scientific images, and its ecosystem of derivatives and variants, including ImageJ2, Fiji, and others." property="og:description"> <meta content="https://imagej.github.io/events/presentations" property="og:url"> <meta content="https://imagej.github.io/media/icons/imagej2.png" property="og:image"> <link rel="apple-touch-icon" sizes="180x180" href="/apple-touch-icon.png"> <link rel="icon" type="image/png" sizes="32x32" href="/favicon-32x32.png"> <link rel="icon" type="image/png" sizes="16x16" href="/favicon-16x16.png"> <link 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data-toc-headings="h1,h2,h3,h4,h5,h6"></ul> </div> </section>  <div class="container"> <header class="major special"> <h1>Presentations</h1> </header> </div>   <section id="page" class="main style1"> <div class="container"> <div class="box alt"></div> <div id="content" class="page-content"> <p>This page collects ImageJ-related presentations, including talks, workshops and posters.</p> <p>Do you know of a publicly archived ImageJ-related presentation not listed here? Please add it!</p> <style> .program th { padding: 0.3em; } .program td { padding: 0 1em 0 1em; font-size: 0.9em; } .section-major { background: lightsteelblue; font-size: 1.1em; font-variant: small-caps; font-weight: bold; text-align: center; } .section-minor { background: lightgray; font-size: 1em; font-variant: small-caps; font-weight: bold; text-align: center; } </style> <h2 id="living-workshops">Living workshops</h2> <p>These materials are regularly updated, and intended to teach ImageJ and Fiji at introductory, intermediate and advanced levels. The <a href="/orgs/loci">LOCI</a> group uses them to teach ImageJ at the <a href="http://www.mbl.edu/education/courses/analytical-quantitative-light-microscopy/">AQLM</a> course every year, as well as locally. Videos of the workshops were recorded in Spring 2017; those links are below along with the corresponding slides used at that time.</p> <table class="program"> <thead> <tr class="header"> <th>Title</th> <th>Resources</th> </tr> </thead> <tbody> <tr> <td>Introduction to ImageJ/Fiji</td> <td> <a href="https://docs.google.com/presentation/d/1JzcToNnOTlt0dmthmkdhAhmcHG3aSnzLcyugB29Csmg/edit?usp=sharing">2024</a>, <a href="https://docs.google.com/presentation/d/1if03t5KoVHgsy8s96ABnlzaGz8dNPUSZ3i5Wpwv5PCs/edit?usp=sharing">2023</a>, <a href="https://docs.google.com/presentation/d/1dcu41cC3Yzw2MnBMiWzWlHd7Rstr8Coo0zRAOXmfSGs/edit?usp=sharing/">2021</a>, <a href="https://docs.google.com/presentation/d/12TUYh2snsOAxcOBNprh70KOqV5gqdzEjGIo2UTHs-DY/edit?usp=sharing/">2019-fall</a>, <a href="/presentations/fiji-introduction/">2019-spring</a>, <a href="/presentations/2017-05/fiji-introduction/">2017</a> </td> </tr> <tr> <td>Image processing with ImageJ/Fiji</td> <td> <a href="https://docs.google.com/presentation/d/1FteAHtgwo60oE3FlrRwQ9La5rn4G090l6mhbGUNwClg/edit?usp=sharing">2023</a> </td> </tr> <tr> <td>Segmentation in ImageJ/Fiji</td> <td> <a href="https://docs.google.com/presentation/d/1ebyxUHph_O_OcngfMsR2QuxMJcdODpu08qAWUpQCIvM/edit?usp=sharing">2023</a>, <a href="https://docs.google.com/presentation/d/1HKHZTTYCZWvm62IvgGAxzOvchwNfJswsx5WtKuRVCRE/edit?usp=sharing">2021</a>, <a href="https://docs.google.com/presentation/d/13FKh5BlkmfSjPJp9wRWFEpbgWz5D6rWfPBxGR7JV8PM/edit#slide=id.g7c8e1a894f_0_0/">2020</a>, <a href="/presentations/fiji-segmentation/">2019</a>, <a href="/presentations/2017-05/fiji-segmentation/">2017</a> </td> </tr> <tr> <td>Scripting with ImageJ/Fiji</td> <td> <a href="https://docs.google.com/presentation/d/1c7cvJLAhRZ9t1zrbbAQ0Zr-hTrHva6WOT6hQQinuDTE/edit?usp=sharing/">2021</a>, <a href="/presentations/fiji-scripting/">2019</a>, <a href="/presentations/2017-05/fiji-scripting/">2017</a> </td> </tr> </tbody> </table> <h2 id="talks">Talks</h2> <table class="program"> <thead> <tr class="header"> <th>Date</th> <th>Presenter</th> <th>Title</th> <th>Resources</th> </tr> </thead> <tbody> <tr> <th colspan=4 class="section-major"><a href="i2k-2024">I2K 2024</a></th> </tr> <tr> <td>2024-Oct-23</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a></td> <td>Fiji Progress and Priorities 2024</td> <td> <a href="https://docs.google.com/presentation/d/1YyFymvpFYA4L-p8gIMgKvJzrZhto6sNl0qItEImNme4/edit?usp=sharing">slides</a> </td> </tr> <tr> <th colspan=4 class="section-major"><a href="https://chanzuckerberg.com/science/meetings/">CZI Imaging 2023</a></th> </tr> <tr> <td>2023-Jul-19</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a></td> <td>The Future of Image Analysis + ImageJ/Fiji</td> <td> <a href="https://docs.google.com/presentation/d/1Lt024rW_g79qTTlcJPaxVbNFJuOzeVdEdDpQPuQJd0I/edit?usp=drive_link">slides</a> </td> </tr> <tr> <th colspan=4 class="section-major"><a href="https://www.embl.de/training/events/2018/IMJ18-01/">From Images to Knowledge with ImageJ & Friends</a></th> </tr> <tr> <td>2024-Oct-29</td> <td><a class="person" href="/people/elevans">Edward Evans</a></td> <td>Segmentation & Scripting with Fiji/ImageJ</td> <td> <a href="https://docs.google.com/presentation/d/1PjzLeKpouuEpxOOwETS4TiOgTHTEbozOIJzcLNA0J6s/edit?usp=sharing">slides</a> </td> </tr> <tr> <td>2018-Dec-06</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a>,<br> <a class="person" href="/people/tpietzsch">Tobias Pietzsch</a>,<br> <a class="person" href="/people/dietzc">Christian Birkhold (Dietz)</a></td> <td>ImageJ and Friends: Retrospective, current status and future</td> <td> <a href="https://downloads.imagej.net/presentations/i2k-2018/ImageJ-and-Friends.pptx">slides (1.6GB PPTX; with movies)</a>,<br> <a href="https://downloads.imagej.net/presentations/i2k-2018/I2K-Opening-Talk.pptx">slides (88M PPTX; no movies)</a> </td> </tr> <tr> <th colspan=4 class="section-major"><a href="http://eubias.org/NEUBIAS/neubias2020-conference/symposium2017-lisbon/">2017 NEUBIAS2020</a></th> </tr> <tr> <td>2017-Feb-16</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a></td> <td>What's New in ImageJ2 ?</td> <td> <a href="/presentations/2017-02-16-imagej2-neubias/#/">slides</a> </td> </tr> <tr> <th colspan=4 class="section-major"><a href="/events/conference-2015">2015 ImageJ Conference</a></th> </tr> <tr> <td colspan=4 class="section-minor">Keynotes</td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/rasband">Wayne Rasband</a></td> <td>Introduction to ImageJ</td> <td> <a href="https://vimeo.com/140929691">video</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a></td> <td>ImageJ2 and Fiji: The ImageJ2 platform, and the Fiji distribution of ImageJ</td> <td> <a href="https://vimeo.com/140929687">video</a>, <a href="/presentations/2015-09-03-imagej2-and-fiji/">slides</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td><a class="person" href="/people/marktsuchida">Mark Tsuchida</a></td> <td>Microscope control and image acquisition with Micro-Manager</td> <td> <a href="https://vimeo.com/140098816">video</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td><a class="person" href="/people/fjug">Florian Jug</a></td> <td>Getting stuff done – Software synergy with ImageJ + KNIME</td> <td> <a href="https://vimeo.com/140098839">video</a> </td> </tr> <tr> <td colspan=4 class="section-minor">Featured presentations</td> </tr> <tr> <td>2015-Sep-04</td> <td><a class="person" href="/people/omsai">Pariksheet Nanda</a></td> <td>Sharing the value of software freedom with non-programmers</td> <td> <a href="https://vimeo.com/140098825">video</a>, <a href="/events/conference-2015/program#pariksheet-nanda---sharing-the-value-of-software-freedom-with-non-programmers">abstract</a>, <a href="http://conference.imagej.net/2015/pariksheet-nanda/transcript.pdf">transcript</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td><a class="person" href="/people/tferr">Tiago A. Ferreira</a></td> <td>Alternative approaches for neuronal morphometry</td> <td> <a href="https://vimeo.com/140098832">video</a>, <a href="/events/conference-2015/program#tiago-ferreira---alternative-approaches-for-neuronal-morphometry">abstract</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/bogovicj">John Bogovic</a></td> <td>The Thin Plate Spline method for smooth non-rigid transformations</td> <td> <a href="https://vimeo.com/140929688">video</a>, <a href="/events/conference-2015/program#john-bogovic---the-thin-plate-spline-method-for-smooth-non-rigid-transformations">abstract</a>, <a href="http://conference.imagej.net/2015/john-bogovic/2015_imagej.pptx">slides</a> </td> </tr> <tr> <td colspan=4 class="section-minor">Lightning talks</td> </tr> <tr> <td>2015-Sep-04</td> <td>Anne Alerding</td> <td>Quantifying soybean stem tissues using common tools in ImageJ & Fiji</td> <td> <a href="https://vimeo.com/140098824">video</a>, <a href="/events/conference-2015/program#anne-alerding---quantifying-soybean-stem-tissues-using-common-tools-in-imagej--fiji">abstract</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/Fab14">Fabrice de Chaumont</a></td> <td>Yet another ImageJ friend: Icy</td> <td> <a href="https://vimeo.com/140929690">video</a>, <a href="/events/conference-2015/program#fabrice-de-chaumont---yet-another-imagej-friend-icy">abstract</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td>Jesus Manuel Falagan</td> <td>Plugins to import, visualize, process & write astronomical FITS files</td> <td> <a href="https://vimeo.com/140929695">video</a>, <a href="/events/conference-2015/program#jesus-manuel-falagan---plugins-to-import-visualize-process--write-astronomical-fits-files">abstract</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td>Bill Heeschen</td> <td>Quantitative characterization of cellular irregularities in extruded polystyrene foam using digital image processing and analysis</td> <td> <a href="https://vimeo.com/140098843">video</a>, <a href="/events/conference-2015/program#bill-heeschen---quantitative-characterization-of-cellular-irregularities-in-extruded-polystyrene-foam-using-digital-image-processing-and-analysis">abstract</a>, <a href="http://conference.imagej.net/2015/bill-heeschen/Heeschen_2015ImageJConf_FoamPatternMacros.ijm">macro</a>,<br> <a href="http://conference.imagej.net/2015/bill-heeschen/Heeschen_2015ImageJConf_TalkSlides.pdf">slides (PDF)</a>, <a href="http://conference.imagej.net/2015/bill-heeschen/Heeschen_2015ImageJConf_TalkSlides.pptx">slides (PPTX)</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/hinerm">Mark Hiner</a></td> <td>ImageJ+MATLAB: Reunited</td> <td> <a href="https://vimeo.com/140929686">video</a>, <a href="/events/conference-2015/program#mark-hiner---imagejmatlab-reunited">abstract</a>, <a href="/presentations/2015-09-03-imagej-matlab/">slides</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td>Irene Landrum</td> <td>SWAMP – a no-cost, open, high-performance computing platform for continuous software assurance</td> <td> <a href="https://vimeo.com/140098818">video</a>, <a href="/events/conference-2015/program#irene-landrum---swamp--a-no-cost-open-high-performance-computing-platform-for-continuous-software-assurance">abstract</a>, <a href="http://conference.imagej.net/2015/irene-landrum/SWAMP%20%20Presentation%202015Aug25.pptx">slides</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/melissalinkert">Melissa Linkert</a></td> <td>OME Bio-Formats: 10 years of proprietary image data</td> <td> <a href="https://vimeo.com/140929689">video</a>, <a href="/events/conference-2015/program#melissa-linkert---ome-bio-formats-10-years-of-proprietary-image-data">abstract</a>, <a href="http://ome.github.io/presentations/2015/bioformats-overview-imagej-conf/">slides</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td>Michael Majurski</td> <td>Accurate and scalable Microscopy Image Stitching Tool (MIST)</td> <td> <a href="https://vimeo.com/140929697">video</a>, <a href="/events/conference-2015/program#michael-majurski---accurate-and-scalable-microscopy-image-stitching-tool-mist">abstract</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td><a class="person" href="/people/bnanes">Benjamin Nanes</a></td> <td>Slide Set: Simplified batch processing with ImageJ2</td> <td> <a href="https://vimeo.com/140098828">video</a>, <a href="/events/conference-2015/program#benjamin-nanes---slide-set-simplified-batch-processing-with-imagej2">abstract</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td><a class="person" href="/people/bnorthan">Brian Northan</a></td> <td>Flexible Deconvolution using ImageJ Ops</td> <td> <a href="https://vimeo.com/140098821">video</a>, <a href="/events/conference-2015/program#brian-northan---flexible-deconvolution-using-imagej-ops">abstract</a>, <a href="/presentations/2015-09-04-imagej2-deconvolution/">slides</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td><a class="person" href="/people/axtimwalde">Stephan Saalfeld</a></td> <td>Seamless stitching without blending</td> <td> <a href="https://vimeo.com/140098840">video</a>, <a href="/events/conference-2015/program#stephan-saalfeld---seamless-stitching-without-blending">abstract</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td>Raghavender Sahdev</td> <td>TimeLapseReg – An ImageJ plugin for drift correction of video sequence in time-lapse microscopy</td> <td> <a href="https://vimeo.com/140098822">video</a>, <a href="/events/conference-2015/program#raghavender-sahdev---timelapsereg--an-imagej-plugin-for-drift-correction-of-video-sequence-in-time-lapse-microscopy-1">abstract</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td><a class="person" href="/people/bene51">Benjamin Schmid</a></td> <td>Real-time multi-view deconvolution of time-lapse data on the GPU</td> <td> <a href="https://vimeo.com/140098826">video</a>, <a href="/events/conference-2015/program#benjamin-schmid---real-time-multi-view-deconvolution-of-time-lapse-data-on-the-gpu">abstract</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td>Amitabh Verma</td> <td>Acquisition, processing & re-processing using OpenPolScope plugin for Micro-Manager</td> <td> <a href="https://vimeo.com/140098844">video</a>, <a href="/events/conference-2015/program#amitabh-verma---acquisition-processing--re-processing-using-openpolscope-plugin-for-micro-manager">abstract</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td><a class="person" href="/people/thorstenwagner">Thorsten Wagner</a></td> <td>NanoTrackJ – An open-source multi-modal size characterization tool for nanoparticle tracking analysis based on ImageJ</td> <td> <a href="https://vimeo.com/140098848">video</a>, <a href="/events/conference-2015/program#thorsten-wagner---nanotrackj--an-open-source-multi-modal-size-characterization-tool-for-nanoparticle-tracking-analysis-based-on-imagej">abstract</a>, <a href="https://dl.dropboxusercontent.com/u/560426/imagej/conference2015/slides.pdf">slides</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td>Petr Walczysko</td> <td>The Open Microscopy Environment (OME)</td> <td> <a href="https://vimeo.com/140098837">video</a>, <a href="/events/conference-2015/program#petr-walczysko---the-open-microscopy-environment-ome">abstract</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td><a class="person" href="/people/jaywarrick">Jay Warrick</a></td> <td>JEX – a platform for data management and batch processing with standard tools</td> <td> <a href="https://vimeo.com/140098819">video</a>, <a href="/events/conference-2015/program#jay-warrick---jex--a-platform-for-data-management-and-batch-processing-with-standard-tools">abstract</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td>Aryeh Weiss</td> <td>Automated processing of telomeres with ImageJ and R</td> <td> <a href="https://vimeo.com/140929694">video</a>, <a href="/events/conference-2015/program#aryeh-weiss---automated-processing-of-telomeres-with-imagej-and-r">abstract</a>, <a href="http://conference.imagej.net/2015/aryeh-weiss/ij2015telomere-A.ppt">slides</a> </td> </tr> <tr> <th colspan=4 class="section-major"><a href="/events/conference-2012">2012 ImageJ Conference</a></th> </tr> <tr> <td>2012-Oct-24</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a></td> <td>ImageJ2: Current Status and Future Directions</td> <td> <a href="http://conference.imagej.net/2012/curtis-rueden/2012-10-24-imagej-conference.odp">slides</a> </td> </tr> <tr> <th colspan=4 class="section-major"><a href="/events/isbi-2012">Bioimage analysis workshop - ISBI 2012</a></th> </tr> <tr> <td>2012-Apr-30</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a></td> <td>ImageJ2 – ImageJ for the Next Generation of Biological Image Data</td> <td> <a href="https://bigwww.epfl.ch/eurobioimaging/presentation-rueden.pdf">slides</a>, <a href="https://bigwww.epfl.ch/eurobioimaging/abstracts/rueden.pdf">abstract</a> </td> </tr> <tr> <th colspan=4 class="section-major"><a href="/events/conference-2010">2010 ImageJ Conference</a></th> </tr> <tr> <td>2010-Oct-27</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a></td> <td>ImageJDev: Next Generation ImageJ</td> <td> <a href="http://conference.imagej.net/2010/curtis-rueden/2010-10-27-ImageJDev.pdf">slides</a> </td> </tr> <tr> <th colspan=4 class="section-major">Other presentations</th> </tr> <tr> <td>2023-Aug-09</td> <td><a class="person" href="/people/hinerm">Mark Hiner</a></td> <td>Introduction to the ImageJ2 Team (C-MITIE Retreat)</td> <td> <a href="https://docs.google.com/presentation/d/166CkXRaaSXS-qd4F6VYyIkYILevMKfCT-jhUyloHUjM/edit?usp=sharing">slides</a> </td> </tr> <tr> <td>2023-Jan-26</td> <td><a class="person" href="/people/elevans">Edward Evans</a></td> <td>Introduction to the ImageJ Ecosystem (Advanced Imaging Methods Workshop 2023)</td> <td> <a href="https://docs.google.com/presentation/d/1e6sbAJjsDIODoVBNNRGYd4vYv1rAi7JlDi-RXDdFu50/edit?usp=sharing">slides</a> </td> </tr> <tr> <td>2022-Jan-20</td> <td><a class="person" href="/people/elevans">Edward Evans</a></td> <td>Introduction to ImageJ (Virtual Advanced Imaging Methods Workshop 2022)</td> <td> <a href="https://docs.google.com/presentation/d/15IoW674_1dcRLdifom43KUauRQke10PaQyXbNOXyn-Q/edit?usp=sharing">slides</a> </td> </tr> <tr> <td>2020-May-13</td> <td>Ellen Dobson</td> <td>ImageJ: An Open Platform for Scientific Image Analysis (Virtual AQLM 2020)</td> <td> <a href="https://docs.google.com/presentation/d/1CCmZEWigNXcG6Yr47l5_WvSEt-pTKKTfMmwOj1YY0Mw/edit?usp=sharing">slides</a> </td> </tr> <tr> <td>2019-Mar-28</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a></td> <td>ImageJ – Vision, Mission and Values: Challenges of a diverse community</td> <td> <a href="https://docs.google.com/presentation/d/1mZBJpxTGzJmD3nFSSl_y2oneHmT8D9bVzTtb0gdvRH0/present">slides</a> </td> </tr> <tr> <td>2015-Jan-12</td> <td><a class="person" href="/people/dscho">Johannes Schindelin</a></td> <td>The ImageJ Ops Framework: Image processing made easy</td> <td> <a href="/presentations/2015-01-12-imagej-ops/">slides</a> </td> </tr> <tr> <td>2014-Mar-20</td> <td><a class="person" href="/people/dscho">Johannes Schindelin</a></td> <td>SciJava Common: Plugins, Contexts, Utilities and More</td> <td> <a href="https://scijava.org/scijava-common/scijava-common.html">slides</a> </td> </tr> <tr> <td>2010-Apr-06</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a></td> <td>ImageJ2: Directions & Goals</td> <td> <a href="/presentations/2010-04-06-loci-imagej2-plan.pdf">slides</a> </td> </tr> <tr> <td>2010-Apr-01</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a></td> <td>LOCI, Fiji & ImageJ2</td> <td> <a href="/presentations/2010-04-01-loci-fiji-imagej2.pdf">slides</a> </td> </tr> </tbody> </table> <h2 id="workshops">Workshops</h2> <table class="program"> <thead> <tr class="header"> <th>Date</th> <th>Presenter</th> <th>Title</th> <th>Resources</th> </tr> </thead> <tbody> <tr> <th colspan=4 class="section-major"><a href="http://eubias.org/NEUBIAS/neubias2020-conference/symposium2017-lisbon/">2017 NEUBIAS2020</a></th> </tr> <tr> <td>-</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a></td> <td>Scripting in ImageJ - An introduction to ImageJ Ops</td> <td> <a href="/presentations/2017-02-12-imagej-ops-neubias/">slides</a> </td> </tr> <tr> <th colspan=4 class="section-major"><a href="/events/conference-2015">2015 ImageJ Conference</a></th> </tr> <tr> <td>2015-Sep-03</td> <td>Aryeh Weiss</td> <td>An introduction to digital image processing</td> <td> <a href="https://vimeo.com/140929692">video</a>, <a href="/events/conference-2015/program#aryeh-weiss12---an-introduction-to-digital-image-processing">abstract</a>, <a href="http://conference.imagej.net/2015/aryeh-weiss/IntroImageProcessingB.ppt">slides</a>, <a href="http://conference.imagej.net/2015/aryeh-weiss/stk_0001_Result%20of%20cftr-wt1.avi.zip">data</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/biovoxxel">Jan Brocher</a></td> <td>Image processing, feature extraction and analysis using the BioVoxxel Toolbox</td> <td> <a href="https://vimeo.com/140929696">video</a>, <a href="/events/conference-2015/program#jan-brocher---image-processing-feature-extraction-and-analysis-using-the-biovoxxel-toolbox">abstract</a>, <a href="https://www.dropbox.com/s/iurb5he4qpsqfrn/BioVoxxel%20Workshop.pdf?dl=0/">slides</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/tferr">Tiago A. Ferreira</a></td> <td>Scripting with BAR</td> <td> <a href="https://vimeo.com/140099767">video</a>, <a href="/events/conference-2015/program#tiago-ferreira---scripting-with-bar">abstract</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td>Dominik Lindner<br> Petr Walczysko</td> <td>The OMERO platform for management of microscopy data and beyond</td> <td> <a href="https://vimeo.com/140099766">video</a>, <a href="/events/conference-2015/program#dominik-lindner-and-petr-walczysko---the-omero-platform-for-management-of-microscopy-data-and-beyond">abstract</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/Fab14">Fabrice de Chaumont</a><br> Stephane Dallongeville</td> <td>Hands on Icy !</td> <td> <a href="https://vimeo.com/140929698">video</a>, <a href="/events/conference-2015/program#fabrice-de-chaumont-and-stephane-dallongeville---hands-on-icy-">abstract</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/thewtex">Matt McCormick</a></td> <td>SimpleITK</td> <td> <a href="https://vimeo.com/140099763">video</a>, <a href="/events/conference-2015/program#matt-mccormick---simpleitk">abstract</a>, <a href="http://bit.ly/1hD5FZF">interactive</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td><a class="person" href="/people/ctrueden">Curtis Rueden</a><br> <a class="person" href="/people/bnorthan">Brian Northan</a></td> <td>ImageJ2 scripts: Parameters + ImageJ Ops</td> <td> <a href="https://vimeo.com/140098817">video 1</a>, <a href="https://vimeo.com/140098835">video 2</a>, <a href="/events/conference-2015/program#curtis-rueden-and-brian-northan---imagej2-scripts-parameters--imagej-ops">abstract</a>, <a href="/presentations/2015-09-04-imagej2-scripting/">slides</a> </td> </tr> <tr> <td>2015-Sep-04</td> <td><a class="person" href="/people/Bio7">Marcel Austenfeld</a></td> <td>Statistical image analysis and reproducible reports with ImageJ and R</td> <td> <a href="https://vimeo.com/140098838">video</a>, <a href="/events/conference-2015/program#marcel-austenfeld---bio7--statistical-image-analysis-and-reproducible-reports-with-imagej-and-r">abstract</a> </td> </tr> <tr> <th colspan=4 class="section-major">Other workshops</th> </tr> <tr> <td>2023-July-27</td> <td><a class="person" href="/people/elevans">Edward Evans</a></td> <td>Van Andel Institute Image processing workshop with ImageJ/Fiji</td> <td> <a href="https://docs.google.com/presentation/d/1e94san5M7zl5n0ZLjQyVBafAFi6zJLyFV1pzvxXItYg/edit?usp=sharing">slides</a> </td> </tr> <tr> <td>2022-April-30</td> <td><a class="person" href="/people/elevans">Edward Evans</a></td> <td>AQLM Image processing, segmentation and scripting with ImageJ/Fiji Workshp</td> <td> <a href="https://docs.google.com/presentation/d/1f8vKVmeRdHYzyXoWZEv-ylpqbWIDR3mlUMAXM6iVawI/edit?usp=sharing">slides</a> </td> </tr> <tr> <td>2022-April-27</td> <td><a class="person" href="/people/etadobson">Ellen TA Dobson</a> & <a class="person" href="/people/elevans">Edward Evans</a></td> <td>ABRF Light Microscopy Research Group - 3D Segmentation using ImageJ</td> <td> <a href="https://docs.google.com/presentation/d/1-hqOCs7NwCa-Edc3s9SP9ln5E9PDdn9wfeQ4_-6Unuk/edit?usp=sharing">slides</a> </td> </tr> <tr> <td>2021-August</td> <td><a class="person" href="/people/etadobson">Ellen TA Dobson</a></td> <td>CZI Workshops</td> <td> <a href="https://chanzuckerberg.wistia.com/medias/uwakj3npiq">Workshop I video</a>, <a href="https://docs.google.com/presentation/d/1eDKMlweAIyTw72LuAv6LCknLE9BmZruTRiWuIPQGadk/edit?usp=sharing">Workshop I slides</a>, <a href="https://chanzuckerberg.wistia.com/medias/2kmue5jamv">Workshop II video</a>, <a href="https://docs.google.com/presentation/d/111nrll-4uyk0ZVrudmFnEZHyNt76RzVZvKvJkOVSoJA/edit?usp=sharing">Workshop II slides</a> </td> </tr> <tr> <td>2020-April-02</td> <td>Robert Haase</td> <td>Lecture BioImage Analysis 2020</td> <td> <a href="https://www.youtube.com/playlist?list=PL5ESQNfM5lc7SAMstEu082ivW4BDMvd0U">YouTube Channel</a> </td> </tr> <tr> <td>2016-Nov-17</td> <td> <a href="/people/iarganda">Ignacio Arganda-Carreras</a> </td> <td>Introduction to Image Segmentation using ImageJ/Fiji</td> <td> <a href="/media/arganda-carreras-segmentation-bioimage-course-mdc-berlin-2016.pdf">slides (PDF)</a> </td> </tr> <tr> <td>2015-Nov-03</td> <td> <a href="/orgs/loci">LOCI</a> </td> <td>Intro to ImageJ Ops - Usage and Development</td> <td> <a href="http://workshops.imagej.net/IntroToOps.pdf">slides (PDF)</a>, <a href="http://workshops.imagej.net/IntroToOps.pptx">slides (PPT)</a> </td> </tr> <tr> <td>-</td> <td> <a href="/software/biodip">BioDIP</a> </td> <td>Basics of Quantitative Image Analysis</td> <td> <a href="http://workshops.imagej.net/Basics-of-Quantitative-image-analysis.pdf">slides (PDF)</a> </td> </tr> </tbody> </table> <h2 id="posters">Posters</h2> <table class="program"> <thead> <tr class="header"> <th>Date</th> <th>Presenter</th> <th>Title</th> <th>Resources</th> </tr> </thead> <tbody> <tr> <th colspan=4 class="section-major"><a href="/events/conference-2015">2015 ImageJ Conference</a></th> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/iarganda">Ignacio Arganda-Carreras</a></td> <td>Trainable Weka Segmentation: a tool for machine-learning-based image segmentation</td> <td> <a href="/events/conference-2015/program#ignacio-arganda-carreras---trainable-weka-segmentation-a-tool-for-machine-learning-based-image-segmentation">abstract</a>, <a href="http://conference.imagej.net/2015/ignacio-arganda-carreras/poster-TWS-ImageJ-Conf-2015.pdf">poster</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/biovoxxel">Jan Brocher</a></td> <td>The BioVoxxel Toolbox</td> <td> <a href="/events/conference-2015/program#jan-brocher---the-biovoxxel-toolbox">abstract</a>, <a href="https://www.dropbox.com/s/7e6bjh3iqnxv014/IJcon2015-Poster%20Brocher%20%28150dpi%29.png?dl=0">poster</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td>Olaya Fernandez-Gayol</td> <td>Using the wrMTrck plugin to analyze the Morris Water maze in mice</td> <td> <a href="/events/conference-2015/program#olaya-fernandez-gayol---using-the-wrmtrck-plugin-to-analyze-the-morris-water-maze-in-mice">abstract</a>, <a href="https://dl.dropboxusercontent.com/u/21343536/Fernandez%20Gayol%20O.pptx">poster</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td>David Logan</td> <td>The ImageJ-CellProfiler Interface</td> <td> <a href="/events/conference-2015/program#david-logan---the-imagej-cellprofiler-interface">abstract</a>, <a href="http://www.broadinstitute.org/~dlogan/posters/2015_09_03_ImageJ_Conf_DLogan_FINAL.pptx">poster</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/tpietzsch">Tobias Pietzsch</a></td> <td>BigDataViewer—Visualization and Image Processing for Terabyte Data Sets</td> <td> <a href="/events/conference-2015/program#tobias-pietzsch---bigdataviewervisualization-and-image-processing-for-terabyte-data-sets">abstract</a>, <a href="https://www.dropbox.com/s/3st8ezbj9jmjzd8/bdv-poster-imagej2015.pdf?dl=0">poster</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/axtimwalde">Stephan Saalfeld</a></td> <td>ImgLib2 for visualization and generic image processing</td> <td> <a href="/events/conference-2015/program#stephan-saalfeld---imglib2-for-visualization-and-generic-image-processing">abstract</a>, <a href="https://www.dropbox.com/s/f23tr3q607dxvlh/imglib2-imagej2015.pdf?dl=0">poster</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td>Raghavender Sahdev</td> <td>TimeLapseReg – An ImageJ plugin for drift correction of video sequence in time-lapse microscopy</td> <td> <a href="/events/conference-2015/program#raghavender-sahdev---timelapsereg--an-imagej-plugin-for-drift-correction-of-video-sequence-in-time-lapse-microscopy_2">abstract</a>, <a href="http://www.raghavendersahdev.com/uploads/3/9/6/2/39623741/timelapsereg.pdf">poster</a> </td> </tr> <tr> <td>2015-Sep-03</td> <td><a class="person" href="/people/thorstenwagner">Thorsten Wagner</a></td> <td>Tools and methods of the Biomedical Imaging Group for ImageJ: An Overview</td> <td> <a href="/events/conference-2015/program#thorsten-wagner-tools-and-methods-of-the-biomedical-imaging-group-for-imagej-an-overview">abstract</a>, <a href="https://dl.dropboxusercontent.com/u/560426/imagej/conference2015/poster.pdf">poster</a> </td> </tr> </tbody> </table> </div> </div> </section>  <section id="footer"> <ul class="icons"> <li><a href="https://forum.image.sc/tag/imagej" class="icon alt"><img src="/media/icons/image-sc.png" width="24" style="vertical-align: middle; margin-top: -10px"><span class="label">Forum</span></a></li> <li><a href="https://twitter.com/hashtag/ImageJ" class="icon brands alt fa-twitter"><span class="label">Twitter</span></a></li> <li><a href="https://github.com/imagej" class="icon brands alt fa-github"><span class="label">GitHub</span></a></li> </ul> <ul class="copyright"> <li>Design: <a 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