RCSB PDB : Structure Explorer

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A value greater than 0 means that the corresponding biological unit is visible. var biologicalUnitCount = -1; function updateStructureImage() { var simpleViewer = document.getElementById("simpleViewer"); if (currentBiologicalUnit == 0) { document.getElementById("image_title").innerHTML = "Asymmetric Unit"; document.switchImageForm.structureImage.src = '/pdb/images/1bgx_asym_r_250.jpg'; document.getElementById("bioUnitNote").style.display = "NONE"; document.getElementById("previous_button").disabled = true; document.getElementById("next_button").disabled = false; simpleViewer.innerHTML = "MBT SimpleViewer"; simpleViewer.href = "/pdb/Viewers/SimpleViewer/simple_viewer_launch.jsp?structureId=1BGX&unit=asym"; } else { document.getElementById("previous_button").disabled = false; if(biologicalUnitCount == currentBiologicalUnit) { document.getElementById("next_button").disabled = true; } else { document.getElementById("next_button").disabled = false; } document.getElementById("image_title").innerHTML = "Biological Molecule" + (biologicalUnitCount > 1 ? " " + currentBiologicalUnit : ""); document.switchImageForm.structureImage.src = '/pdb/images/1bgx_bio_r_250.jpg?bioNum=' + currentBiologicalUnit; simpleViewer.innerHTML = "MBT SimpleViewer*"; document.getElementById("bioUnitNote").style.display = ""; simpleViewer.href = "/pdb/Viewers/SimpleViewer/simple_viewer_launch.jsp?structureId=1BGX&unit=bio&unit_id=" + currentBiologicalUnit; } } function nextImage() { currentBiologicalUnit++; updateStructureImage(); } function previousImage() { currentBiologicalUnit--; updateStructureImage(); } </script> <form name="switchImageForm" action=""> <table border="0" cellpadding="0" cellspacing="0" width="256"> <tr class="homedark"> <td class="putih4"> Images and Visualization</td> <td align="right" valign="top"><img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/home/tablecorner.gif" alt="" border="0"></td> </tr> <tr> <td colspan="2"> <table border="0" cellpadding="1" cellspacing="0" width="100%" class="homedark"> <tr> <td> <table border="0" cellpadding="1" cellspacing="0" width="100%" class="homewhite">  <tr> <td align="center"><font size="2" face="Arial, Arial, Helvetica">Biological Molecule / Asymmetric Unit</font></td> </tr> <tr> <td align="center"><img id="structureImage" name="structureImage" src="/web/20070704130909im_/http://www.rcsb.org/pdb/images/1bgx_asym_r_250.jpg" border="0" alt="Biological Molecule / Asymmetric Unit Image for 1BGX"> </td> </tr> <tr> <td align="center" class="it_item"> <table> <tr> <td class="it_item" colspan="4" align="center">Display Options <a href="javascript:callHelp(roboLoc, 'visualize_pdb_structures.htm');"><img alt="Help | Display Options" title="Help | Display Options " src="/web/20070704130909im_/http://www.rcsb.org/pdb/skins/pastel/images/tree/question.gif" border="0" style="vertical-align: middle;"></a> </td> </tr> <tr> <td align="center"><a class="imagetable" href="/web/20070704130909/http://www.rcsb.org/pdb/static.do?p=explorer/viewers/king.jsp" title="KiNG requires Java">KiNG</a></td> </tr> <tr> <td align="center"><a class="imagetable" href="/web/20070704130909/http://www.rcsb.org/pdb/static.do?p=explorer/viewers/jmol.jsp" title="Jmol requires Java">Jmol</a></td> </tr> <tr> <td align="center"><a class="imagetable" href="/web/20070704130909/http://www.rcsb.org/pdb/static.do?p=explorer/viewers/webmol.jsp" title="WebMol requires Java">WebMol</a></td> </tr> <tr> <td align="center"><a name="proteinWorkshop" id="proteinWorkshop" class="imagetable" href="/web/20070704130909/http://www.rcsb.org/pdb/Viewers/ProteinWorkshop/protein_workshop_launch.jsp?structureId=1BGX&unit=asym" title="MBT ProteinWorkshop requires Java">MBT Protein Workshop</a></td> </tr> <tr><td align="center"><a class="imagetable" href="/web/20070704130909/http://www.rcsb.org/pdb/static.do?p=Viewers/QuickPDB/quickPDBApplet.jsp" title="QuickPDB requires Java">QuickPDB</a></td></tr> <tr> <td align="center"><a class="imagetable" href="/web/20070704130909/http://www.rcsb.org/pdb/explore/images.do?structureId=1BGX">All Images</a></td> </tr>  </table> </td> </tr> </table> </td> </tr> </table> </td> </tr> </table> </form> </td> </tr> <tr> <td><span style="font-size:11px;color:#f00;white-space:nowrap;">Red - Derived Information</span></td> <td></td> </tr> <tr class="se_back1"> <td width="15%" align="right" valign="top" class="se_item"> Title </td> <td width="85%" valign="top" class="se_datalarge1"> TAQ POLYMERASE IN COMPLEX WITH TP7, AN INHIBITORY FAB <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="StructureTitle"> </td> </tr> <tr class="se_back2"> <td width="15%" align="right" class="se_item"> Authors </td> <td width="85%"> <form action="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do" method="get" name="queryStructureAuthorForm"> <input type="hidden" name="authName" value=""> <input type="hidden" name="smartSearchSubtype" value="AuthorQuery"> <input type="hidden" name="display" value="true"> <a class="seAuthors" onmouseover="this.className='seAuthorsHover';" onmouseout="this.className='seAuthors';" onclick="searchStructureAuthor('Murali, R.');">Murali, R.</a>,  <a class="seAuthors" onmouseover="this.className='seAuthorsHover';" onmouseout="this.className='seAuthors';" onclick="searchStructureAuthor('Sharkey, D.J.');">Sharkey, D.J.</a>,  <a class="seAuthors" onmouseover="this.className='seAuthorsHover';" onmouseout="this.className='seAuthors';" onclick="searchStructureAuthor('Daiss, J.L.');">Daiss, J.L.</a>,  <a class="seAuthors" onmouseover="this.className='seAuthorsHover';" onmouseout="this.className='seAuthors';" onclick="searchStructureAuthor('Krishna Murthy, H.M.');">Krishna Murthy, H.M.</a> <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="StructureExperimentAuthors"> </form> </td> </tr> <tr class="se_back1"> <td width="15%" align="right" class="se_item"> <form action="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do" method="get" name="queryCitationAuthorForm"> <input type="hidden" name="citation_author.name.value" value=""> <input type="hidden" name="citation_author.name.comparator" value="contains"> <input type="hidden" name="citation_author.citation_id.value" value=""> <input type="hidden" name="smartSearchSubtype" value="CitationAuthorQuery"> <input type="hidden" name="display" value="true"> </form> Primary Citation </td> <td width="85%" class="se_datasmall1"> <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchCitationAuthor('Murali, R.', true);">Murali, R.</a>,  <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchCitationAuthor('Sharkey, D.J.', true);">Sharkey, D.J.</a>,  <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchCitationAuthor('Daiss, J.L.', true);">Daiss, J.L.</a>,  <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchCitationAuthor('Murthy, H.M.', true);">Murthy, H.M.</a> <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationArticleAuthors"> Crystal structure of Taq DNA polymerase in complex with an inhibitory Fab: the Fab is directed against an intermediate in the helix-coil dynamics of the enzyme. <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationArticleTitle"> <span class="se_journal">Proc.Natl.Acad.Sci.USA</span> <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationJournalName"> <span class="se_journal">v95</span> <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationJournalVolume"> <span class="se_journal">pp.12562-12567</span> , <span class="se_journal">1998</span> <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationJournalYear"> <br> [ <a class="se_datalarge" href="/web/20070704130909/http://www.rcsb.org/pdb/explore/pubmed.do?structureId=1BGX" name="Abstract" alt="View Searchable PubMed Abstract" title="View Searchable PubMed Abstract">Abstract</a> ]    <a class="se_datalarge" href="https://web.archive.org/web/20070704130909/http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=9770525" target="resource_window"> <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/abstract_icon.gif" border="0" alt="View PubMed Abstract at NCBI" title="View PubMed Abstract at NCBI"> </td> </tr> <tr class="se_back2"> <td width="15%" align="right" class="se_item"> History </td> <td width="85%" class="se_datalarge2"> <span class="se_subitem">Deposition  </span> 1998-06-02 <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="DepositionDate"> <span class="se_subitem"> Release </span> 1998-10-14 <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="ReleaseDate"> </td> </tr> <tr class="se_back1"> <td width="15%" align="right" class="se_item"> Experimental Method </td> <td width="85%" class="se_datalarge1"> <span class="se_subitem">Type  </span> X-RAY DIFFRACTION <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt=""> <span class="se_subitem">Data</span> <a class="se_datasmall1">N/A</a> </td></tr> <tr class="se_back2"> <td width="15%" align="right" class="se_item"> Parameters </td> <td width="85%" class="se_datalarge2"> <form action="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do" method="get" name="sgQueryForm"> <input type="hidden" name="smartSearchSubtype" value="SpaceGroupQuery"> <input type="hidden" name="display" value="true"> <input type="hidden" name="symmetry.space_group_name_H-M.value" value=""> <input type="hidden" name="symmetry.space_group_name_H-M.comparator" value="="> <table border="0" cellpadding="1" cellspacing="1" width="100%"> <tr class="se_subitem2"> <td width="20%"> Resolution[Å] <a href="/web/20070704130909/http://www.rcsb.org/pdb/statistics/histogram.do?mdcat=refine&mditem=ls_d_res_high&minLabel=0&maxLabel=5&numOfbars=10"> <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/images/histogram16x16.jpg" border="0" title="View a histogram of Resolution" alt="View a histogram of Resolution"> </a> </td> <td width="20%"> R-Value </td> <td width="20%"> R-Free <td width="25%"> Space Group </td> </tr> <tr class="se_subitem2"> <td width="20%" class="se_datalarge2"> 2.30 <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="Resolution"> </td> <td width="20%" align="left" class="se_datalarge2"> 0.189 (obs.) </td> <td width="20%" align="left" class="se_datalarge2"> 0.253 </td> <td width="25%" class="se_datalarge2"> <a class="se_datasmall" onclick="searchSpaceGroup('P 1');" onmouseover="this.className='se_datasmallHover'" onmouseout="this.className='se_datasmall'"> P 1 </a> <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="SpaceGroup"> </td> </tr> </table> </form> </td> </tr> <tr class="se_back1"> <td width="15%" align="right" class="se_item"> Unit Cell </td> <td width="85%" class="se_datalarge1" valign="top"> <table border="0" cellpadding="1" cellspacing="1" width="100%"> <tr class="se_subitem1"> <td width="20%"> <span class="se_unitcellitem">Length [Å]</span> </td> <td width="13%"> a </td> <td width="13%"> <span class="se_datasmall1">76.60</span> </td> <td width="13%"> b </td> <td width="13%"> <span class="se_datasmall1">89.10</span> </td> <td width="13%"> c </td> <td width="15%"> <span class="se_datasmall1">89.30</span> </td> </tr> <tr class="se_subitem1"> <td width="20%"> <span class="se_unitcellitem">Angles [°]</span> </td> <td width="13%"> alpha </td> <td width="13%"> <span class="se_datasmall1">100.70</span>  </td> <td width="13%"> beta </td> <td width="13%"> <span class="se_datasmall1">115.30</span>  </td> <td width="13%"> gamma </td> <td width="15%"> <span class="se_datasmall1">95.30</span>  </td> </tr> </table> </td> </tr> <tr class="se_back2"> <td width="15%" align="right" valign="top" class="se_item"> Molecular Description Asymmetric Unit </td> <td width="85%" class="se_datalarge2" valign="top"> <form action="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do" method="get" name="ecQueryForm"> <input type="hidden" name="smartSearchSubtype" value="EnzymeClassificationQuery"> <input type="hidden" name="display" value="true"> <input type="hidden" name="entity.pdbx_ec.value" value=""> <input type="hidden" name="entity.pdbx_ec.comparator" value="=">  <span class="se_subitem"><br>Polymer:</span> 1   <span class="se_subitem">Molecule:</span> TAQ DNA POLYMERASE   <span class="se_subitem">Chains:</span> T   <span class="se_subitem">EC no.:</span> <a class="se_datasmall" onclick="searchEc('2.7.7.7');" onmouseover="this.className='se_datasmallHover'" onmouseout="this.className='se_datasmall'">2.7.7.7</a> <a class="se_datalarge" href="https://web.archive.org/web/20070704130909/http://www.chem.qmul.ac.uk/iubmb/enzyme/EC2/7/7/7.html" target="resource_window"><img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/iubmb_icon.gif" border="0" alt="Go to IUBMB EC entry" title="Go to IUBMB EC entry"></a>   <span class="se_subitem"><br>Polymer:</span> 2   <span class="se_subitem">Molecule:</span> TP7 MAB   <span class="se_subitem">Fragment:</span> FAB   <span class="se_subitem">Chains:</span> L   <span class="se_subitem"><br>Polymer:</span> 3   <span class="se_subitem">Molecule:</span> TP7 MAB   <span class="se_subitem">Fragment:</span> FAB   <span class="se_subitem">Chains:</span> H   </form> <form action="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do" method="get" name="queryKeywordsForm"> <input type="hidden" name="smartSearchSubtype" value="StructureKeywordsQuery"> <input type="hidden" name="display" value="true"> <input type="hidden" name="struct_keywords.pdbx_keywords.value" value=""> <input type="hidden" name="struct_keywords.pdbx_keywords.comparator" value="contains"> </form> <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="Compound"> </td> </tr> <tr class="se_back1"> <td width="15%" align="right" valign="top" class="se_item"> Classification </td> <td width="40%" class="se_datalarge1"> <span class="qrb_value"> <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchPdbxKeyword('COMPLEX (POLYMERASE/INHIBITOR)');"> Complex (polymerase/inhibitor)       </a> </span> <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="StructureSummary"> </td> </tr> <tr class="se_back2"> <td width="15%" align="right" valign="top" class="se_item"> Source <form action="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do" method="get" name="srcQueryForm">  <input type="hidden" name="smartSearchSubtype" value="CifFieldsQuery"> <input type="hidden" name="entity_src_nat.pdbx_organism_scientific.value" value=""> <input type="hidden" name="entity_src_nat.common_name.value" value=""> <input type="hidden" name="entity_src_gen.pdbx_gene_src_scientific_name.value" value=""> <input type="hidden" name="entity_src_gen.gene_src_common_name.value" value=""> </form> </td> <td width="85%" class="se_datalarge2" valign="top" colspan="2"> <span class="se_subitem">Polymer:</span>  1    <span class="se_subitem">Scientific Name:</span> <span class="qrb_value"> <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', 'THERMUS AQUATICUS', '');">  Thermus aquaticus   </a> </span> <a class="se_datalarge" href="https://web.archive.org/web/20070704130909/http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=271" target="resource_window"><img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/taxonomy_icon.gif" border="0" alt="Go to NCBI Taxonomy entry" title="Go to NCBI Taxonomy entry"></a> <span class="se_subitem">Expression system:</span> <span class="qrb_value"> <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', 'ESCHERICHIA COLI', '');">  Escherichia coli   </a> </span> <span class="se_subitem">Polymer:</span>  2    <span class="se_subitem">Scientific Name:</span> <span class="qrb_value"> <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', 'MUS MUSCULUS', '');">  Mus musculus   </a> </span> <a class="se_datalarge" href="https://web.archive.org/web/20070704130909/http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=271" target="resource_window"><img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/taxonomy_icon.gif" border="0" alt="Go to NCBI Taxonomy entry" title="Go to NCBI Taxonomy entry"></a> <span class="se_subitem">Common Name:</span> <span class="qrb_value"> <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', '', 'MOUSE');">  Mouse   </a> </span> <span class="se_subitem">Expression system:</span> <span class="qrb_value"> <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', 'MUS MUSCULUS', '');">  Mus musculus   </a> </span> <span class="se_subitem">Polymer:</span>  3    <span class="se_subitem">Scientific Name:</span> <span class="qrb_value"> <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', 'MUS MUSCULUS', '');">  Mus musculus   </a> </span> <a class="se_datalarge" href="https://web.archive.org/web/20070704130909/http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=271" target="resource_window"><img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/taxonomy_icon.gif" border="0" alt="Go to NCBI Taxonomy entry" title="Go to NCBI Taxonomy entry"></a> <span class="se_subitem">Common Name:</span> <span class="qrb_value"> <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', '', 'MOUSE');">  Mouse   </a> </span> <span class="se_subitem">Expression system:</span> <span class="qrb_value"> <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', 'MUS MUSCULUS', '');">  Mus musculus   </a> </span> <img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/explorer/images/spacer.gif" alt="" name="Source"> </td> </tr>  <tr class="se_back1"> <td width="15%" align="right" valign="top" class="se_item"> <a href="https://web.archive.org/web/20070704130909/http://scop.mrc-lmb.cam.ac.uk/scop/" class="external_ref" target="_blank">SCOP Classification <font size="-2">(version 1.71)</font></a> </td> <td width="85%" valign="top" colspan="2"> <table border="0" cellpadding="1" cellspacing="1" width="100%"> <tr class="se_subitem1"> <td width="12%"> Domain Info </td> <td width="13%"> Class </td> <td width="15%"> Fold </td> <td width="15%"> Superfamily </td> <td width="15%"> Family </td> <td width="15%"> Domain </td> <td width="15%"> Species </td> </tr> <tr> <td width="12%" class="se_datasmall1"> d1bgxt1 </td> <td width="13%" class="se_datasmall1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=46456"> All alpha proteins</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=47768"> SAM domain-like</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=47807"> 5' to 3' exonuclease, C-terminal subdomain</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=47808"> 5' to 3' exonuclease, C-terminal subdomain</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=47811"> 5' to 3' exonuclease domain of DNA polymerase Taq</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=47812"> Thermus aquaticus</a> </td> </tr> <tr> <td width="12%" class="se_datasmall1"> d1bgxl1 </td> <td width="13%" class="se_datasmall1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48724"> All beta proteins</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48725"> Immunoglobulin-like beta-sandwich</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48726"> Immunoglobulin</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48727"> V set domains (antibody variable domain-like)</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=88519"> Immunoglobulin light chain kappa variable domain, VL- kappa</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=88528"> Mouse (Mus musculus), cluster 3.2</a> </td> </tr> <tr> <td width="12%" class="se_datasmall1"> d1bgxh1 </td> <td width="13%" class="se_datasmall1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48724"> All beta proteins</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48725"> Immunoglobulin-like beta-sandwich</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48726"> Immunoglobulin</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48727"> V set domains (antibody variable domain-like)</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=88543"> Immunoglobulin heavy chain variable domain, VH</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=88557"> Mouse (Mus musculus), cluster 7.1</a> </td> </tr> <tr> <td width="12%" class="se_datasmall1"> d1bgxl2 </td> <td width="13%" class="se_datasmall1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48724"> All beta proteins</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48725"> Immunoglobulin-like beta-sandwich</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48726"> Immunoglobulin</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48942"> C1 set domains (antibody constant domain- like)</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=88566"> Immunoglobulin light chain kappa constant domain, CL- kappa</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=88567"> Mouse (Mus musculus)</a> </td> </tr> <tr> <td width="12%" class="se_datasmall1"> d1bgxh2 </td> <td width="13%" class="se_datasmall1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48724"> All beta proteins</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48725"> Immunoglobulin-like beta-sandwich</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48726"> Immunoglobulin</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=48942"> C1 set domains (antibody constant domain- like)</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=88574"> Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=88576"> Mouse (Mus musculus)</a> </td> </tr> <tr> <td width="12%" class="se_datasmall1"> d1bgxt2 </td> <td width="13%" class="se_datasmall1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=51349"> Alpha and beta proteins (a/b)</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=88722"> PIN domain-like</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=88723"> PIN domain-like</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=53045"> 5' to 3' exonuclease catalytic domain</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=53048"> 5' to 3' exonuclease domain of DNA polymerase Taq</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=53049"> Thermus aquaticus</a> </td> </tr> <tr> <td width="12%" class="se_datasmall1"> d1bgxt3 </td> <td width="13%" class="se_datasmall1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=51349"> Alpha and beta proteins (a/b)</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=53066"> Ribonuclease H-like motif</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=53098"> Ribonuclease H-like</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=53118"> DnaQ-like 3'-5' exonuclease</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=53119"> Exonuclease domain of prokaryotic DNA polymerase</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=53121"> Thermus aquaticus</a> </td> </tr> <tr> <td width="12%" class="se_datasmall1"> d1bgxt4 </td> <td width="13%" class="se_datasmall1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56572"> Multi-domain proteins (alpha and beta)</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56671"> DNA/RNA polymerases</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56672"> DNA/RNA polymerases</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56673"> DNA polymerase I</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56674"> DNA polymerase I (Klenow fragment)</a> </td> <td width="15%" class="se_datalarge1"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56676"> Thermus aquaticus</a> </td> </tr> </table> </td> </tr> <tr class="se_back2"> <td width="15%" align="right" valign="top" class="se_item"> <a href="https://web.archive.org/web/20070704130909/http://www.cathdb.info/" class="external_ref" target="_blank">CATH Classification <font size="-2">(version v3.0.0)</font></a> </td> <td width="85%" valign="top" colspan="2"> <table border="0" cellpadding="1" cellspacing="1" width="100%"> <tr class="se_subitem2"> <td width="20%"> Domain </td> <td width="20%"> Class </td> <td width="20%"> Architecture </td> <td width="20%"> Topology </td> <td width="20%"> Homology </td> </tr> <tr> <td width="20%" class="se_datasmall2"> 1bgxH01 </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=997">Mainly Beta</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1390">Sandwich</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1487">Immunoglobulin-like</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1488">Immunoglobulins</a> </td> </tr> <tr> <td width="20%" class="se_datasmall2"> 1bgxH02 </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=997">Mainly Beta</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1390">Sandwich</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1487">Immunoglobulin-like</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1488">Immunoglobulins</a> </td> </tr> <tr> <td width="20%" class="se_datasmall2"> 1bgxL01 </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=997">Mainly Beta</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1390">Sandwich</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1487">Immunoglobulin-like</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1488">Immunoglobulins</a> </td> </tr> <tr> <td width="20%" class="se_datasmall2"> 1bgxL02 </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=997">Mainly Beta</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1390">Sandwich</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1487">Immunoglobulin-like</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1488">Immunoglobulins</a> </td> </tr> <tr> <td width="20%" class="se_datasmall2"> 1bgxT01 </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1641">Alpha Beta</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2361">3-Layer(aba) Sandwich</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2532">Rossmann fold</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2538">5'-nuclease</a> </td> </tr> <tr> <td width="20%" class="se_datasmall2"> 1bgxT02 </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1">Mainly Alpha</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2">Orthogonal Bundle</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=146">DNA polymerase; domain 1</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=154">5' to 3' exonuclease, C-terminal subdomain</a> </td> </tr> <tr> <td width="20%" class="se_datasmall2"> 1bgxT03 </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1641">Alpha Beta</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1826">2-Layer Sandwich</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2126">Nucleotidyltransferase; domain 5</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2127"></a> </td> </tr> <tr> <td width="20%" class="se_datasmall2"> 1bgxT04 </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1">Mainly Alpha</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=640">Up-down Bundle</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=653">Taq DNA Polymerase; Chain T, domain 4</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=654">Taq DNA Polymerase; Chain T, domain 4</a> </td> </tr> <tr> <td width="20%" class="se_datasmall2"> 1bgxT05 </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1641">Alpha Beta</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1826">2-Layer Sandwich</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2233">Alpha-Beta Plaits</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2270"></a> </td> </tr> <tr> <td width="20%" class="se_datasmall2"> 1bgxT06 </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1">Mainly Alpha</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2">Orthogonal Bundle</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=146">DNA polymerase; domain 1</a> </td> <td width="20%" class="se_datasmall2"> <a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=154">5' to 3' exonuclease, C-terminal subdomain</a> </td> </tr> </table> </td> </tr> <tr class="se_back1"> <td width="15%" align="right" valign="top" class="se_item"> <a href="https://web.archive.org/web/20070704130909/http://www.sanger.ac.uk/Software/Pfam/" class="external_ref" target="_blank">PFAM Classification </a> </td> <td width="85%" valign="top" colspan="2"> <table border="0" cellpadding="1" cellspacing="1" width="100%"> <tr class="se_subitem1"> <td width="5%"> Chain </td> <td width="20%"> PFAM Accession </td> <td width="15%"> PFAM ID </td> <td width="25%"> Description </td> <td width="15%"> Type </td> <td width="20%"> Clan ID </tr> <tr> <td width="5%" class="se_datasmall1"> T </td> <td width="20%" class="se_datasmall1"> PF01367 <a class="se_datalarge" href="https://web.archive.org/web/20070704130909/http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01367" target="resource_window"><img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/images/Linkout.jpg" alt="Link out to PFAM:PF01367" title="Link out to PFAM:PF01367" border="0"></a> </td> <td width="15%" class="se_datasmall1"> 5_3_exonuc </td> <td width="25%" class="se_datasmall1"> 5'-3' exonuclease, C-terminal SAM fold </td> <td width="15%" class="se_datasmall1"> Domain </td> <td width="20%" class="se_datasmall1" title="Clan Description: n/a"> n/a </td> </tr> <tr> <td width="5%" class="se_datasmall1"> T </td> <td width="20%" class="se_datasmall1"> PF02739 <a class="se_datalarge" href="https://web.archive.org/web/20070704130909/http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02739" target="resource_window"><img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/images/Linkout.jpg" alt="Link out to PFAM:PF02739" title="Link out to PFAM:PF02739" border="0"></a> </td> <td width="15%" class="se_datasmall1"> 5_3_exonuc_N </td> <td width="25%" class="se_datasmall1"> 5'-3' exonuclease, N-terminal resolvase-like domain </td> <td width="15%" class="se_datasmall1"> Domain </td> <td width="20%" class="se_datasmall1" title="Clan Description: n/a"> n/a </td> </tr> <tr> <td width="5%" class="se_datasmall1"> T </td> <td width="20%" class="se_datasmall1"> PF00476 <a class="se_datalarge" href="https://web.archive.org/web/20070704130909/http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00476" target="resource_window"><img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/images/Linkout.jpg" alt="Link out to PFAM:PF00476" title="Link out to PFAM:PF00476" border="0"></a> </td> <td width="15%" class="se_datasmall1"> DNA_pol_A </td> <td width="25%" class="se_datasmall1"> DNA polymerase family A </td> <td width="15%" class="se_datasmall1"> Family </td> <td width="20%" class="se_datasmall1" title="Clan Description: n/a"> n/a </td> </tr> <tr> <td width="5%" class="se_datasmall1"> T </td> <td width="20%" class="se_datasmall1"> PF09281 <a class="se_datalarge" href="https://web.archive.org/web/20070704130909/http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF09281" target="resource_window"><img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/images/Linkout.jpg" alt="Link out to PFAM:PF09281" title="Link out to PFAM:PF09281" border="0"></a> </td> <td width="15%" class="se_datasmall1"> Taq-exonuc </td> <td width="25%" class="se_datasmall1"> Taq polymerase, exonuclease </td> <td width="15%" class="se_datasmall1"> Domain </td> <td width="20%" class="se_datasmall1" title="Clan Description: n/a"> n/a </td> </tr> </table> </td> </tr> <tr class="se_back2"> <td width="15%" align="right" valign="top" class="se_item"> <a href="https://web.archive.org/web/20070704130909/http://www.geneontology.org/" class="external_ref" target="_blank">GO Terms</a> </td> <td width="85%" valign="top" colspan="2"> <table border="0" cellpadding="1" cellspacing="1" width="100%"> <tr class="se_subitem1"> <td width="25%"> Polymer </td> <td width="25%"> Molecular Function </td> <td width="25%"> Biological Process </td> <td width="25%"> Cellular Component </td> </tr> <tr> <td width="25%" class="se_datasmall1"> TAQ DNA POLYMERASE (1BGX:T) </td> <td width="25%" class="se_datasmall1"> <ul> <li><a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=3677">DNA binding</a> <li><a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=3677">DNA binding</a> <li><a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=3887">DNA-directed DNA polymerase activity</a> <li><a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=3887">DNA-directed DNA polymerase activity</a> <li><a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=8409">5'-3' exonuclease activity</a> <li><a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=8409">5'-3' exonuclease activity</a> <li><a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=43565">sequence-specific DNA binding</a> <li><a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=43565">sequence-specific DNA binding</a> </ul> </td> <td width="25%" class="se_datasmall1"> <ul> <li><a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=4&n=6260">DNA replication</a> <li><a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=4&n=6260">DNA replication</a> </ul> </td> <td width="25%" class="se_datasmall1"> <ul> <li><a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=5&n=5622">intracellular</a> <li><a class="se_datasmall" href="/web/20070704130909/http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=5&n=5622">intracellular</a> </ul> </td> </tr> <tr> <td width="25%" class="se_datasmall1"> TP7 MAB (1BGX:L) </td> <td width="25%" class="se_datasmall1"> <ul> <li><span class="se_datasmall1">none</span> </ul> </td> <td width="25%" class="se_datasmall1"> <ul> <li><span class="se_datasmall1">none</span> </ul> </td> <td width="25%" class="se_datasmall1"> <ul> <li><span class="se_datasmall1">none</span> </ul> </td> </tr> <tr> <td width="25%" class="se_datasmall1"> TP7 MAB (1BGX:H) </td> <td width="25%" class="se_datasmall1"> <ul> <li><span class="se_datasmall1">none</span> </ul> </td> <td width="25%" class="se_datasmall1"> <ul> <li><span class="se_datasmall1">none</span> </ul> </td> <td width="25%" class="se_datasmall1"> <ul> <li><span class="se_datasmall1">none</span> </ul> </td> </tr> </table> </td> </tr> <tr> <td>  <form name="PDFCREATOR" action="/web/20070704130909/http://www.rcsb.org/pdb/sepdf" method="post" target="sepdfwin"> <input type="hidden" name="strId" value="1BGX"> <input type="hidden" name="strTitle" value="TAQ POLYMERASE IN COMPLEX WITH TP7, AN INHIBITORY FAB"> <input type="hidden" 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beta-sandwich,PIN domain-like,Ribonuclease H-like motif,DNA/RNA polymerases,"> <input type="hidden" name="SelCrit" value="n/a"> <input type="hidden" name="CalcTot" value="n/a"> <input type="hidden" name="SubTot" value="n/a"> <input type="hidden" name="Method" value="X-RAY DIFFRACTION">  </form> </td> </tr> </table> </td> </tr> <tr> <td valign="top" class="maintd"> </td> </tr> </table> </td> </tr>  <tr> <td colspan="3"> <table width="100%" border="0" cellpadding="0" cellspacing="0"> <tr>  <td class="foothomelight"><img src="/web/20070704130909im_/http://www.rcsb.org/pdbstatic/images/spacer.gif" alt="" height="15" border="0"></td> <td class="foothomelight" colspan="2"></td> </tr> <tr> <td class="foothomedark1" colspan="3"> <a class="foothomedark1" href="https://web.archive.org/web/20070704130909/http://home.rcsb.org/" target="_blank"><i>© RCSB Protein Data Bank   </i></a> </td> </tr>  <tr> <td colspan="3"><br></td> </tr> </table> </td> </tr> </tbody> </table> <script type="text/javascript" language="JavaScript" src="/web/20070704130909js_/http://www.rcsb.org/pdbstatic/common/lib/wz_tooltip.js"></script> <script type="text/javascript" language="javascript" src="/web/20070704130909js_/http://www.rcsb.org/pdbstatic/common/lib/awstats_misc_tracker.js"></script> <script type="text/javascript" language="JavaScript"> // Props to Simon Willison: // http://simon.incutio.com/archive/2004/05/26/addLoadEvent var oldhandler = window.onload; window.onload = (typeof oldhandler == "function") ? function() { oldhandler(); initExpandableLists(); } : initExpandableLists; </script> </body> </html>

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