Evidence & Conclusion Ontology | Evidence & Conclusion Ontology

<!DOCTYPE HTML>  <html> <head> <link rel="icon" type="image/png" href="/static/evidenceontology/images/eco_favicon.ico"> <meta charset="utf-8" /> <meta name="viewport" content="width=device-width, initial-scale=1" /> <meta name="ga_prove_ownership" content="GooGhywoiu9839t543j0s7543uw1 - pls add dolleyj@gmail.com to GA account UA-77195844 with ‘Manage Users and Edit’ permissions - date 2018-04-03." />  <link id="main-theme-css"rel="stylesheet" href="/static/evidenceontology/assets/css/main.css" />   <script src="/static/evidenceontology/assets/js/jquery.min.js"></script> <script src="/static/evidenceontology/assets/js/jquery.dropotron.min.js"></script> <script src="/static/evidenceontology/assets/js/skel.min.js"></script> <script src="/static/evidenceontology/assets/js/skel-viewport.min.js"></script> <script src="/static/evidenceontology/assets/js/util.js"></script>  <script src="/static/evidenceontology/assets/js/main.js"></script>  <script src="/static/evidenceontology/assets/js/bootstrap3.3.5.min.js"></script>  <link rel="stylesheet" href="/static/evidenceontology/assets/css/jquery-ui-1.11.4-theme-smoothness.css"> <script src="/static/evidenceontology/assets/js/jquery-1.10.2.js"></script> <script src="/static/evidenceontology/assets/js/jquery-ui-1.11.4.js"></script>  <script async src="https://www.googletagmanager.com/gtag/js?id=G-W199GTKTS3"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'G-W199GTKTS3'); </script> <style> /* adds scrollbar to jquery autocomplete * http://jsfiddle.net/chemark/vgh3vtyx/ */ .ui-autocomplete { max-height: 600px; overflow-y: auto; overflow-x: hidden; padding-right: 20px; } /* IE 6 doesn't support max-height * we use height instead, but this forces the menu to always be this tall */ * html .ui-autocomplete { height: 600px; } h3.ui-accordion-header, #customers td, #customers th { font-weight: 700; } </style> <script> $.widget( "custom.catcomplete", $.ui.autocomplete, { _create: function() { this._super(); this.widget().menu( "option", "items", "> :not(.ui-autocomplete-category)" ); }, _renderMenu: function( ul, items ) { var that = this, currentCategory = ""; $.each( items, function( index, item ) { var li; if ( item.category != currentCategory ) { ul.append( "<li class='ui-autocomplete-category'><b><u>" + item.category + "</u></b></li>" ); currentCategory = item.category; } li = that._renderItemData( ul, item ); if ( item.category ) { li.attr( "aria-label", item.category + " : " + item.label ); } }); }, // bolden text that matches the searched word //http://jsfiddle.net/rdworth/AgpaN/ _renderItem: function( ul, item ) { var term = this.element.val(); var re = new RegExp( term, "gi"); var html = item.label.replace( re, "<strong style='color:black'>$&</strong>" ); // var xref_html = item.xref.replace( re, "<strong style='color:black'>$&</strong>" ); // var syn_html = item.syn.replace( re, "<strong style='color:black'>$&</strong>" ); var br, xref, syn = " "; if (item.xref.length > 0) { var xref_html = item.xref.replace( re, "<strong style='color:black'>$&</strong>" ); xref = "<br /><small style='font-size:75%; line_height: 80%;'> Xref: " + xref_html + "</small>"; } if (item.syn.length > 0) { var syn_html = item.syn.replace( re, "<strong style='color:black'>$&</strong>" ); syn = "<br /><small style='font-size:75%; line_height: 80%;'>Synonym: " + syn_html + "</small>"; } return $( "<li></li>" ) .data( "item.autocomplete", item ) .append( $("<a style='text-decoration: none;'></a>").html(html) ) .append( xref ) .append( syn ) // .append( "<hr/>" ) .appendTo( ul ); } }); </script> <script> // Nav Search Bar JQuery script $(function() { // change input outline color to match site's theme $('input, textarea').focus(function() { $(this).css('outline-color', '#B1DDAB'); }); //search all models in database // http://stackoverflow.com/questions/4980662/jquery-autocomplete-plugin-using-a-django-database-model?rq=1 $("#site-search").catcomplete({ source: "/autocomplete_search/", minLength: 1, // select drop-down item. Then press 'Enter' to go to link select:function(e,ui) { if (ui.item.hasOwnProperty('eco_id')) { // NOTE: Was needed when we directed to 'browse' instead of 'term' // var term_id = ui.item.eco_id.replace(":", "_"); var term_id = ui.item.eco_id; } $('#site-search').keypress(function(e){ if (e.which ==13) { //http://stackoverflow.com/questions/4597050/how-to-check-if-the-url-contains-a-given-string if(window.location.href.indexOf("post/") > -1) { if (ui.item.category == "ECO Term"){ // append eco_id to URL (used by OLS-graphview) window.location.href = '../../term/' + term_id; } else { window.location.href = '../../' + ui.item.the_link; } } else if (window.location.href.indexOf("publications/") > -1) { if (ui.item.category == "ECO Term"){ // append eco_id to URL (used by OLS-graphview) window.location.href = '../../term/' + term_id; } else { window.location.href = '../../' + ui.item.the_link; } } else if (window.location.href.indexOf("term/") > -1) { if (ui.item.category == "ECO Term"){ // append eco_id to URL (used by OLS-graphview) window.location.href = '../../term/' + term_id; } else { window.location.href = '../../' + ui.item.the_link; } } else if (window.location.href.indexOf("browse/") > -1) { if (ui.item.category == "ECO Term"){ // append eco_id to URL (used by OLS-graphview) window.location.href = '../../term/' + term_id; window.location.reload(); } else { window.location.href = '../../' + ui.item.the_link; } } else { if (ui.item.category == "ECO Term"){ // append eco_id to URL (used by OLS-graphview) window.location.href = '../term/' + term_id; } else { window.location.href = '../' + ui.item.the_link; } } //end window.location if/else if/else } //end e.which==13 }); } }); }); </script> <title>Evidence & Conclusion Ontology | Evidence & Conclusion Ontology</title> <meta name="description" content="An ontology characterizing evidence types for supporting conclusions in scientific research."> </head> <body class="homepage"> <div id="page-wrapper">  <header id="header"> <div class="logo container"> <a href="/" id="logo"><img id="logo" src= "/static/evidenceontology/images/eco_logo_big.png"></a> <h1 class="logo title"><a href="/" id="logo">Evidence & Conclusion Ontology</a></h1> </div> </header>  <nav id="nav"> <ul> <li class="current"><a href="/">Home</a></li> <li class=""><a href="/browse/" target="_blank">Browse Ontology</a></li> <li class=""> <a href="/download/">Download Ontology</a> <ul> <li><a href="/download/#releases">Releases</a></li> </ul> </li> <li class=""> <a href="/annotation_resources/">Annotation Resources</a> <ul> <li><a href="/annotation_resources/#eco_go_mappings">ECO Term Mappings to GO Evidence Codes</a></li> <li><a href="/annotation_resources/#eco_collectf">ECO-CollecTF Manual Curation Corpus</a></li> <li><a href="/annotation_resources/#eco_sri_mapping">ECO-SRI Evidence Mapping</a></li> </ul> </li> <li class=""> <a href="/submit_term_request/">Submit Term Request</a> </li> <li class=""> <a href="/docs/">Publications/Presentations</a> <ul> <li><a href="/docs/#how_to_cite_eco">How to Cite ECO</a></li> <li><a href="/docs/#publications">Publications</a></li> <li><a href="/docs/#presentations">Presentations</a></li> </ul> </li> <li class=""> <a href="/about_eco/">About ECO</a> <ul> <li><a href="/about_eco/#background">Background</a></li> <li><a href="/about_eco/#history">History</a></li> <li><a href="/about_eco/#license">License</a></li> <li><a href="/about_eco/#contactus">Contact Us</a></li> <li><a href="/about_eco/#staff">Staff</a></li> <li><a href="/about_eco/#usergroups">Our Users</a></li> </ul> </li> </li> <li> <div class="ui-widget"> <input id="site-search" name="site-search" type="text" placeholder="Search site..."> </div> </li> </ul> </nav>   <div id="main-wrapper"> <div id="main" class="container"> <div class="row"> <div class="12u"> <section class="box features"> <p> The Evidence and Conclusion Ontology (ECO) contains terms (classes) that describe types of evidence and assertion methods. ECO terms are used in the process of biocuration to capture the evidence that supports biological assertions (e.g. gene product X has function Y as supported by evidence Z). Capture of this information allows tracking of annotation provenance, establishment of quality control measures, and query of evidence. </p> </section> </div> </div>  <div class="row"> <div id="site_pages_container" class="8u 12u(mobile)" style="margin-left:-25px;padding-left:0;padding-top:25px;"> <section class="box highlight" style="border-right: solid 2px #e7eae8;"> <ul class="special"> <li class="3u 6u(mobile)"> <a href="/browse/" class="icon fa-share-alt fa-rotate-90" target="_blank"> <span class="label">Browse Ontology</span> </a> <h3>Browse Ontology</h3> </li> <li class="3u 6u(mobile)"> <a href="/download/" class="icon fa-download"> <span class="label">Download Ontology</span> </a> <h3>Download Ontology</h3> </li> <li class="3u 6u(mobile)"> <a href="/annotation_resources/" class="icon fa-edit"> <span class="label">Annotation Resources</span> </a> <h3>Annotation Resources</h3> </li> <li class="3u 6u(mobile)"> <a href="/submit_term_request/" class="icon fa-ticket"> <span class="label">Submit Term Request</span> </a> <h3>Submit Term Request</h3> </li> <li class="3u 6u(mobile)"> <a href="/docs/" class="icon fa-book"> <span class="label">Publications/Presentations</span> </a> <h3>Publications/Presentations</h3> </li> <li class="3u 6u(mobile)"> <a href="/about_eco/" class="icon fa-info"> <span class="label">About ECO</span> </a> <h3>About ECO</h3> </li> </ul> <div class="row"> <div class="12u"> <ul class="actions"> <li> <a href="/about_eco/#contactus" class="button">Contact Us</a> </li> <li> <a href="/docs/#how_to_cite_eco" class="button">How to Cite Us</a> </li> </ul> </div> </div> </section> </div> <div id="recent_news_container" class="4u 12u(mobile)" style="padding-top:25px;"> <div class="sidebar"> <div class="row"> <h2>Recent News</h2> </div>  <section style="overflow-y:auto;height:50vh;"> <ul class="divided"> <li> <article class="box post-summary"> <h3><a href="/publications/2022-01-14-1500091951740000-eco-the-evidence-and-conclusion-ontology-an-update-for-2022">ECO: the Evidence and Conclusion Ontology, an update for 2022</a></h3> <ul class="meta"> <li class="icon fa-user"> Suvarna Nadendla, Rebecca Jackson, …</li> <li class="icon fa-newspaper-o">Published Jan. 7, 2022</li> <br/> <li class="icon fa-clock-o"> Posted 2 years, 10 months ago</li> </ul> </article> </li> <li> <article class="box post-summary"> <h3><a href="/publications/2021-09-15-1503093262550000-eco-collectf-a-corpus-of-annotated-evidence-based-assertions-in-biomedical-manuscripts">ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts</a></h3> <ul class="meta"> <li class="icon fa-user"> Elizabeth T Hobbs, Stephen …</li> <li class="icon fa-newspaper-o">Published July 13, 2021</li> <br/> <li class="icon fa-clock-o"> Posted 3 years, 2 months ago</li> </ul> </article> </li> <li> <article class="box post-summary"> <h3><a href="/publications/2021-09-15-1502248525800000-phenotype-annotation-with-the-ontology-of-microbial-phenotypes-omp">Phenotype annotation with the ontology of microbial phenotypes (OMP)</a></h3> <ul class="meta"> <li class="icon fa-user"> Deborah A Siegele, Sandra …</li> <li class="icon fa-newspaper-o">Published July 15, 2019</li> <br/> <li class="icon fa-clock-o"> Posted 3 years, 2 months ago</li> </ul> </article> </li> <li> <article class="box post-summary"> <h3><a href="/docs/#biocuration-2019-evidence-and-conclusion-ontology-2019-update">BioCuration 2019 - Evidence and Conclusion Ontology 2019 Update</a></h3> <ul class="meta"> <li class="icon fa-clock-o">Posted 4 years, 5 months ago</li> </ul> </article> </li> <li> <article class="box post-summary"> <h3><a href="/docs/#icbo-2018-poster-current-development-in-the-evidence-and-conclusion-ontology-eco">ICBO 2018 Poster - Current Development in the Evidence and Conclusion Ontology (ECO)</a></h3> <ul class="meta"> <li class="icon fa-clock-o">Posted 6 years, 2 months ago</li> </ul> </article> </li> </ul>  </section>  </div> </div> </div>  </div> </div>  <footer id="footer" class="container"> <div id="skipForPrint" class="row 200%"> <div class="12u" style="padding-top:100px">  <section> <h2 class="major"><span>Funding</span></h2>  <p style="margin-bottom: 0.5em"> This project was previously supported by the <br/> <a href="https://www.nsf.gov/div/index.jsp?div=DBI"> Directorate for Biological Sciences (BIO), National Science Foundation. </a> </p> <p style="margin-bottom: 0.5em"> <a href="https://www.nsf.gov/awardsearch/showAward?AWD_ID=1458400">Award Number: 1458400</a><br/> <a href="https://www.nsf.gov/div/index.jsp?div=DBI"><img src="/static/evidenceontology/images/nsf1.png" width="42"></img></a> </p> <p style="margin-bottom: 0.5em"> Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. </p> </section> </div> </div>  <div id="copyright"> <ul id="skipForPrint" class="menu"> <li style="color: #E7EAE8"> <a href="/admin/">Admin</a> </li> <li> © 2024 Evidence & Conclusion Ontology <a href="https://creativecommons.org/publicdomain/zero/1.0/">(CC0 1.0)</a> </li> <li> Design: <a href="http://html5up.net">HTML5 UP</a> </li> <li style="color: #E7EAE8"> Blank </li> </ul> </div>  </footer> </div> </body> </html>

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Evidence & Conclusion Ontology | Evidence & Conclusion Ontology