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Description Examples of Sequence Data

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FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..1471</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Vibrio halioticoli" /<a href="/ddbj/qualifiers-e.html#strain">strain</a>="IAM 14597" <a href="/ddbj/features-e.html#rRNA">rRNA</a> <a href="/ddbj/location-e.html">&lt;1..&gt;1471</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="16S ribosomal RNA" </code></pre> <h3 id="A02">A02) 18S rRNA gene including intron</h3> <p>Use the sequence with the same direction of rRNA transcripts, NOT complementary strand.</p> <pre><code>DEFINITION Sporobolomyces ruber JCM 6884 gene for 18S rRNA, partial sequence. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..2072</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Sporobolomyces ruber" /<a href="/ddbj/qualifiers-e.html#strain">strain</a>="JCM 6884" <a href="/ddbj/features-e.html#rRNA">rRNA</a> <a href="/ddbj/location-e.html">join(&lt;1..1144,1469..&gt;2072)</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="18S ribosomal RNA" <a href="/ddbj/features-e.html#intron">intron</a> <a href="/ddbj/location-e.html">1145..1468</a> </code></pre> <h3 id="A03">A03) ITS1, ITS2</h3> <p>Use the sequence with the same direction of rRNA transcripts, NOT complementary strand.</p> <pre><code>DEFINITION Microsphaera trifolii var. trifolii MUMH29s genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..597</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#isolate">isolate</a>="MUMH29s" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Microsphaera trifolii var. trifolii" /<a href="/ddbj/qualifiers-e.html#host">host</a>="Trifolium vulgaris" /<a href="/ddbj/qualifiers-e.html#tissue_type">tissue_type</a>="conidia" /<a href="/ddbj/qualifiers-e.html#variety">variety</a>="trifolii" <a href="/ddbj/features-e.html#rRNA">rRNA</a> <a href="/ddbj/location-e.html">&lt;1..4</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="18S ribosomal RNA" <a href="/ddbj/features-e.html#misc_RNA">misc_RNA</a> <a href="/ddbj/location-e.html">5..224</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="internal transcribed spacer 1" <a href="/ddbj/features-e.html#rRNA">rRNA</a> <a href="/ddbj/location-e.html">225..378</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="5.8S ribosomal RNA" <a href="/ddbj/features-e.html#misc_RNA">misc_RNA</a> <a href="/ddbj/location-e.html">379..562</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="internal transcribed spacer 2" <a href="/ddbj/features-e.html#rRNA">rRNA</a> <a href="/ddbj/location-e.html">563..&gt;597</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="28S ribosomal RNA" </code></pre> <p>It is not required to specify boundaries between rRNA and ITS. <br /> If each feature (rRNA, ITS) location is not clear, following annotation can be described.</p> <pre><code>FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..597</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#isolate">isolate</a>="MUMH29s" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Microsphaera trifolii var. trifo lii" /<a href="/ddbj/qualifiers-e.html#host">host</a>="Trifolium vulgaris" /<a href="/ddbj/qualifiers-e.html#tissue_type">tissue_type</a>="conidia" /<a href="/ddbj/qualifiers-e.html#variety">variety</a>="trifolii" <a href="/ddbj/features-e.html#misc_RNA">misc_RNA</a> <a href="/ddbj/location-e.html">&lt;1..&gt;597</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="contains 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, and 28S ribosomal RNA" </code></pre> <h3 id="A04">A04) intergenic spacer, IGS</h3> <p>In the case of IGS, input the sequence with the order of adjacent gene names is the same as the order of appearance in the sequence.</p> <pre><code>DEFINITION Setaria italica cv. Shimokatsugi genes for 25S rRNA, IGS, 17S rRNA, partial and complete sequence. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..2646</a> /<a href="/ddbj/qualifiers-e.html#clone">clone</a>="pSIR012" /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#cultivar">cultivar</a>="Shimokatsugi" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Setaria italica" <a href="/ddbj/features-e.html#rRNA">rRNA</a> <a href="/ddbj/location-e.html">&lt;1..493</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="25S ribosomal RNA" <a href="/ddbj/features-e.html#misc_feature">misc_feature</a> 494..2484 /<a href="/ddbj/qualifiers-e.html#note">note</a>="intergenic spacer, IGS" <a href="/ddbj/features-e.html#rRNA">rRNA</a> <a href="/ddbj/location-e.html">2485..&gt;2646</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="17S ribosomal RNA" </code></pre> <pre><code>DEFINITION Acer distylum AX-1 chloroplast DNA, psbA-trnH IGS. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..264</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#isolate">isolate</a>="AX-1" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organelle">organelle</a>="plastid:chloroplast" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Acer distylum" <a href="/ddbj/features-e.html#misc_feature">misc_feature</a> <a href="/ddbj/location-e.html">&lt;1..&gt;264</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="psbA-trnH intergenic spacer" </code></pre> <pre><code>DEFINITION Acer distylum AY-b chloroplast genes for photosystem II protein D1, psbA-trnH IGS, tRNA-His. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location.html">1..466</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#isolate">isolate</a>="AY-b" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organelle">organelle</a>="plastid:chloroplast" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Acer distylum" <a href="/ddbj/features-e.html#CDS">CDS</a> <a href="/ddbj/location-e.html">&lt;1..40</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="psbA" /<a href="/ddbj/qualifiers-e.html#product">product</a>="photosystem II protein D1" /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="DLAAIEAPSTNG" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=11 <a href="/ddbj/features-e.html#misc_feature">misc_feature</a> <a href="/ddbj/location-e.html">41..453</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="psbA-trnH intergenic spacer" <a href="/ddbj/features-e.html#tRNA">tRNA</a> <a href="/ddbj/location-e.html">454..&gt;466</a> /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="trnH" /<a href="/ddbj/qualifiers-e.html#product">product</a>="tRNA-His" </code></pre> <h2 id="B">B: Protein-coding genes</h2> <h3 id="B01">B01) CDS (mRNA)</h3> <pre><code>DEFINITION Homo sapiens AQP9 mRNA for aquaporin 9, complete cds. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..2878</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="mRNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" /<a href="/ddbj/qualifiers-e.html#tissue_type">tissue_type</a>="liver" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">217..1104</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="AQP9" /<a href="/ddbj/qualifiers-e.html#product">product</a>="aquaporin 9" /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=1 </code></pre> <h3 id="B02">B02) CDS (DNA)</h3> <pre><code>DEFINITION Aspergillus oryzae RIB128 tglA gene for triacylglycerol lipase, complete cds. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..1025</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Aspergillus oryzae" /<a href="/ddbj/qualifiers-e.html#strain">strain</a>="RIB128" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">join(34..330,378..523,607..764,827..990)</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="tglA" /<a href="/ddbj/qualifiers-e.html#product">product</a>="triacylglycerol lipase" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=1 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" </code></pre> <h3 id="B03">B03) premature mRNA</h3> <pre><code>DEFINITION Cynops pyrrhogaster CpTbx3 premature mRNA, partial cds. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..5170</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#dev_stage">dev_stage</a>="gastrula" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="transcribed RNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Cynops pyrrhogaster" /<a href="/ddbj/qualifiers-e.html#tissue_type">tissue_type</a>="embryo" <a href="/ddbj/features-e.html#intron">intron</a> <a href="/ddbj/location-e.html">&lt;1..359</a> <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">&lt;360..2135</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="CpTbx3" /<a href="/ddbj/qualifiers-e.html#note">note</a>="T-box family member; T-box domain" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=1 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" </code></pre> <h3 id="B04">B04) promoter region</h3> <pre><code>DEFINITION Mus musculus 129SVJ mNB-3 gene for neural recognition molecule NB-3, exon 1 and promoter region. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..1300</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#dev_stage">dev_stage</a>="4-8 weeks old" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Mus musculus" /<a href="/ddbj/qualifiers-e.html#sex">sex</a>="female" /<a href="/ddbj/qualifiers-e.html#strain">strain</a>="129SVJ" <a href="/ddbj/features-e.html#regulatory">regulatory</a> <a href="/ddbj/location-e.html">&lt;1..1197</a> /<a href="/ddbj/qualifiers-e.html#regulatory_class">regulatory_class</a>="promoter" <a href="/ddbj/features-e.html#exon">exon</a> <a href="/ddbj/location-e.html">1198..&gt;1300</a> /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="mNB-3" /<a href="/ddbj/qualifiers-e.html#note">note</a>="neural recognition molecule NB-3" /<a href="/ddbj/qualifiers-e.html#number">number</a>=1 </code></pre> <h3 id="B05">B05) 5’ flanking region</h3> <pre><code>DEFINITION Mus musculus 129SV gene for membrane cofactor protein CD46, 5' flanking region. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..1614</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Mus musculus" /<a href="/ddbj/qualifiers-e.html#strain">strain</a>="129SV" <a href="/ddbj/features-e.html#misc_feature">misc_feature</a> <a href="/ddbj/location-e.html">1..1614</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="5' flanking region" /<a href="/ddbj/qualifiers-e.html#product">product</a>="membrane cofactor protein CD46" </code></pre> <h3 id="B06">B06) pseudogene</h3> <pre><code>DEFINITION Homo sapiens pseudogene, necdin. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..2285</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">&lt;1..1319</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="pseudogene of necdin" /<a href="/ddbj/qualifiers-e.html#pseudogene">pseudogene</a>="processed" </code></pre> <h3 id="B07">B07) alternative splicing (mRNA)</h3> <pre><code><strong>[isoform 1]</strong> DEFINITION Homo sapiens BAP2 mRNA for BAI-associated protein 2 alpha, complete cds. ACCESSION XA000001 FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..3168</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="mRNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">94..1659</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="BAP2" /<a href="/ddbj/qualifiers-e.html#note">note</a>="alternative splicing: see also Acc# XA000002.1" /<a href="/ddbj/qualifiers-e.html#product">product</a>="BAI-associated protein 2 alpha" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=1 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <strong>[isoform 2]</strong> DEFINITION Homo sapiens BAP2 mRNA for BAI-associated protein 2 beta, complete cds. ACCESSION XA000002 FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..2129</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="mRNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">94..1659</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="BAP2" /<a href="/ddbj/qualifiers-e.html#note">note</a>="alternative splicing: see also Acc# XA000001.1" /<a href="/ddbj/qualifiers-e.html#product">product</a>="BAI-associated protein 2 beta" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=1 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" </code></pre> <h3 id="B08">B08) alternative splicing (DNA)</h3> <pre><code>DEFINITION Homo sapiens KNP-I gene for KNP-I alpha protein, KNP-I beta protein, partial cds, alternative splicing. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..13051</a> /<a href="/ddbj/qualifiers-e.html#cell_line">cell_line</a>="GM130B" /<a href="/ddbj/qualifiers-e.html#cell_type">cell_type</a>="B-lymphoblastoid" /<a href="/ddbj/qualifiers-e.html#chromosome">chromosome</a>="21" /<a href="/ddbj/qualifiers-e.html#clone">clone</a>="D6B5" /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#map">map</a>="21q22.3" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" <a href="/ddbj/features-e.html#exon">exon</a> <a href="/ddbj/location-e.html">2676..2884</a> /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="KNP-I" /<a href="/ddbj/qualifiers-e.html#number">number</a>=1 <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">join(2744..2884,3148..3200,5106..5219,6223..6342,9296..</a> <a href="/ddbj/location-e.html">9388,12251..&gt;12407)</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="KNP-I" /<a href="/ddbj/qualifiers-e.html#product">product</a>="KNP-I alpha protein" /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">join(2744..2884,3148..3200,5106..5219,6223..6342,12251..</a> <a href="/ddbj/location-e.html">&gt;12407)</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="KNP-I" /<a href="/ddbj/qualifiers-e.html#note">note</a>="alternative splicing" /<a href="/ddbj/qualifiers-e.html#product">product</a>="KNP-I beta protein" /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#exon">exon</a> <a href="/ddbj/location-e.html">3148..3200</a> /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="KNP-I" /<a href="/ddbj/qualifiers-e.html#number">number</a>=2 <a href="/ddbj/features-e.html#exon">exon</a> <a href="/ddbj/location-e.html">5106..5219</a> /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="KNP-I" /<a href="/ddbj/qualifiers-e.html#number">number</a>=3 <a href="/ddbj/features-e.html#exon">exon</a> <a href="/ddbj/location-e.html">6223..6342</a> /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="KNP-I" /<a href="/ddbj/qualifiers-e.html#number">number</a>=4 <a href="/ddbj/features-e.html#exon">exon</a> <a href="/ddbj/location-e.html">9296..9388</a> /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="KNP-I" /<a href="/ddbj/qualifiers-e.html#number">number</a>=5 <a href="/ddbj/features-e.html#exon">exon</a> <a href="/ddbj/location-e.html">12251..12407</a> /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="KNP-I" /<a href="/ddbj/qualifiers-e.html#number">number</a>=6 </code></pre> <h3 id="B09">B09) RNA editing</h3> <pre><code>DEFINITION Beta vulgaris TK81-O mitochondrial nad4L gene for NADH dehydrogenase subunit 4L, complete cds. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..400</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organelle">organelle=</a>"mitochondrion" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Beta vulgaris" /<a href="/ddbj/qualifiers-e.html#strain">strain</a>="TK81-O" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">71..373</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#exception">exception</a>="RNA editing" /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="nad4L" /<a href="/ddbj/qualifiers-e.html#note">note</a>="initiation codon is created by RNA editing" /<a href="/ddbj/qualifiers-e.html#product">product</a>="NADH dehydrogenase subunit 4L" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=1 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#misc_feature">misc_feature</a> <a href="/ddbj/location-e.html">72</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="C to U RNA editing" <a href="/ddbj/features-e.html#misc_feature">misc_feature</a> <a href="/ddbj/location-e.html">117</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="C to U RNA editing" <a href="/ddbj/features-e.html#misc_feature">misc_feature</a> <a href="/ddbj/location-e.html">125</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="C to U RNA editing" <a href="/ddbj/features-e.html#misc_feature">misc_feature</a> <a href="/ddbj/location-e.html">180</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="C to U RNA editing" <a href="/ddbj/features-e.html#misc_feature">misc_feature</a> <a href="/ddbj/location-e.html">201</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="C to U RNA editing" </code></pre> <h3 id="B10">B10) ribosomal frameshift in HIV1 complete genome</h3> <pre><code>DEFINITION Human immunodeficiency virus 1 95TNIH047 proviral DNA, complete genome. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..9430</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#isolate">isolate</a>="95TNIH047" /<a href="/ddbj/qualifiers-e.html#isolation_source">isolation_source</a>="peripheral blood mononuclear cell of male patient" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Human immunodeficiency virus 1" /<a href="/ddbj/qualifiers-e.html#proviral">proviral</a> <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">join(759..2049,2049..5059)</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="gag-pol" /<a href="/ddbj/qualifiers-e.html#note">note</a>="produced by ribosomal frameshift slip on tttttt slippery site" /<a href="/ddbj/qualifiers-e.html#product">product</a>="gag-pol fusion polyprotein" /<a href="/ddbj/qualifiers-e.html#ribosomal_slippage">ribosomal_slippage</a> /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">759..2255</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="gag" /<a href="/ddbj/qualifiers-e.html#product">product</a>="Gag polyprotein precursor" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=1 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" --- The rest is omitted --- </code></pre> <h3 id="B11">B11) partial TAA stop codon in mitochondrial genome</h3> <pre><code>DEFINITION Mus musculus SAMP8 mitochondrial DNA, complete genome. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..16299</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organelle">organelle</a>="mitochondrion" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Mus musculus" /<a href="/ddbj/qualifiers-e.html#strain">strain</a>="SAMP8" /<a href="/ddbj/qualifiers-e.html#tissue_type">tissue_type</a>="liver" --- omitted --- <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">8607..9390</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="COX3" /<a href="/ddbj/qualifiers-e.html#note">note</a>="TAA stop codon is completed by the addition of 3' A residues to the mRNA" /<a href="/ddbj/qualifiers-e.html#product">product</a>="cytochrome oxidase subunit 3" /<a href="/ddbj/qualifiers-e.html#transl_except">transl_except</a>=(pos:9390,aa:TERM) /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=2 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#tRNA">tRNA</a> <a href="/ddbj/location-e.html">9391..9458</a> /<a href="/ddbj/qualifiers-e.html#anticodon">anticodon</a>=(pos:9421..9423,aa:Gly,seq:tcc) /<a href="/ddbj/qualifiers-e.html#note">note</a>="codon recognized: GGA" /<a href="/ddbj/qualifiers-e.html#product">product</a>="tRNA-Gly" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">9459..9806</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="ND3" /<a href="/ddbj/qualifiers-e.html#product">product</a>="NADH dehydrogenase subunit 3" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=2 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#tRNA">tRNA</a> <a href="/ddbj/location-e.html">9808..9875</a> /<a href="/ddbj/qualifiers-e.html#anticodon">anticodon</a>=(pos:9838..9840,aa:Arg,seq:tcg) /<a href="/ddbj/qualifiers-e.html#note">note</a>="codon recognized: CGA" /<a href="/ddbj/qualifiers-e.html#product">product</a>="tRNA-Arg" --- The rest is omitted --- </code></pre> <h3 id="B12">B12) Major Histocompatibility Complex (MHC)</h3> <pre><code>DEFINITION Homo sapiens HLA-A gene for MHC class I antigen, partial cds, allele: HLA-A2(A*0201V3). FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..546</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#note">note</a>="HLA-A2(A*0201V3)/24,B35/60,DRB1*1501/1202" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">&lt;1..&gt;546</a> /<a href="/ddbj/qualifiers-e.html#allele">allele</a>="HLA-A2(A*0201V3)" /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=3 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="HLA-A" /<a href="/ddbj/qualifiers-e.html#product">product</a>="MHC class I antigen" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=1 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" </code></pre> <h3 id="B13">B13) trans_splicing</h3> <pre><code>DEFINITION Psilotum nudum cv. Kingyoku chloroplast DNA, complete genome. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..138829</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#cultivar">cultivar</a>="Kingyoku" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organelle">organelle</a>="plastid:chloroplast" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Psilotum nudum" ---- omitted ---- <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">join(complement(68922..69035),133880..134137)</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#note">note</a>="trans splicing of 5'rps12 exon and 3'rps12 exon" /<a href="/ddbj/qualifiers-e.html#product">product</a>="ribosomal protein S12" /<a href="/ddbj/qualifiers-e.html#protein_id">protein_id</a>="BAB84240.1" /<a href="/ddbj/qualifiers-e.html#trans_splicing">trans_splicing</a> /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=11 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="MPTIQQLIRNARQPIRSRTKSPALRG CPQRRGVCIRVYTTTPK KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVSVRGGRVKDLPGVRYHIVRGT LDAVGVKDRKQGRSRYGVKKPK" <a href="/ddbj/features-e.html#exon">exon</a> <a href="/ddbj/location-e.html">complement(68922..69035)</a> /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="rps12" /<a href="/ddbj/qualifiers-e.html#note">note</a>="5'rps12 exon, trans splicing" /<a href="/ddbj/qualifiers-e.html#number">number</a>=1 /<a href="/ddbj/qualifiers-e.html#product">product</a>="ribosomal protein S12" ---- omitted ---- <a href="/ddbj/features-e.html#exon">exon</a> <a href="/ddbj/location-e.html">133880..134137</a> /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="rps12" /<a href="/ddbj/qualifiers-e.html#note">note</a>="3'rps12 exon, trans splicing" /<a href="/ddbj/qualifiers-e.html#number">number</a>=2 /<a href="/ddbj/qualifiers-e.html#product">product</a>="ribosomal protein S12" ---- omitted ---- </code></pre> <h3 id="B14">B14) preproprotein</h3> <pre><code>DEFINITION Homo sapiens NMS mRNA for prepro-neuromedin S, complete cds. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..485</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="mRNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">8..469</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#q_gene">gene</a>="NMS" /<a href="/ddbj/qualifiers-e.html#product">product</a>="prepro-neuromedin S" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=1 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#sig_peptide">sig_peptide</a> <a href="/ddbj/location-e.html">8..88</a> /<a href="/ddbj/qualifiers-e.html#q_gene">gene</a>="NMS" <a href="/ddbj/features-e.html#propeptide">propeptide</a> <a href="/ddbj/location-e.html">89..466</a> /<a href="/ddbj/qualifiers-e.html#q_gene">gene</a>="NMS" /<a href="/ddbj/qualifiers-e.html#product">product</a>="pro-neuromedin S" <a href="/ddbj/features-e.html#mat_peptide">mat_peptide</a> <a href="/ddbj/location-e.html">332..430</a> /<a href="/ddbj/qualifiers-e.html#q_gene">gene</a>="NMS" /<a href="/ddbj/qualifiers-e.html#product">product</a>="neuromedin S" </code></pre> <h3 id="B15">B15) polyprotein</h3> <pre><code>DEFINITION Dengue virus 2 DR123 genomic RNA, complete genome. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..10723</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2001" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Dominican Republic" /<a href="/ddbj/qualifiers-e.html#host">host</a>="Homo sapiens" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic RNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Dengue virus 2" /<a href="/ddbj/qualifiers-e.html#strain">strain</a>="DR123" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">97..10272</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#product">product</a>="polyprotein" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=1 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#mat_peptide">mat_peptide</a> <a href="/ddbj/location-e.html">97..438</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="anchored capsid protein C" <a href="/ddbj/features-e.html#mat_peptide">mat_peptide</a> <a href="/ddbj/location-e.html">439..936</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="membrane glycoprotein precursor M" <a href="/ddbj/features-e.html#mat_peptide">mat_peptide</a> <a href="/ddbj/location-e.html">937..2421</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="envelope protein E" <a href="/ddbj/features-e.html#mat_peptide">mat_peptide</a> <a href="/ddbj/location-e.html">2422..3477</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="nonstructural protein NS1" <a href="/ddbj/features-e.html#mat_peptide">mat_peptide</a> <a href="/ddbj/location-e.html">3478..4131</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="nonstructural protein NS2A" <a href="/ddbj/features-e.html#mat_peptide">mat_peptide</a> <a href="/ddbj/location-e.html">4132..4518</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="nonstructural protein NS2B" <a href="/ddbj/features-e.html#mat_peptide">mat_peptide</a> <a href="/ddbj/location-e.html">4519..6375</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="nonstructural protein NS3" <a href="/ddbj/features-e.html#mat_peptide">mat_peptide</a> <a href="/ddbj/location-e.html">6376..6825</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="nonstructural protein NS4A" <a href="/ddbj/features-e.html#mat_peptide">mat_peptide</a> <a href="/ddbj/location-e.html">6826..7569</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="nonstructural protein NS4B" <a href="/ddbj/features-e.html#mat_peptide">mat_peptide</a> <a href="/ddbj/location-e.html">7570..10269</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="RNA-dependent RNA polymerase" </code></pre> <h3 id="B16">B16) misc_feature instead of CDS (DNA)</h3> <p>In the follwoing cases or some, you should use <a href="/ddbj/features-e.html#misc_feature">misc_feature</a> instead of <a href="/ddbj/features-e.html#cds">CDS</a> feature.</p> <ul> <li>Locations of exons/introns cannot be specified.</li> <li>Quality of sequencing result is low.</li> <li>Expected amino acid sequence can not be obtained due to frame mismatch, though the reson is unknown.</li> <li>Conceptual translation is not available due to <a href="/ddbj/cds-e.html#stop">stop codons appearing in the middle of sequence</a>, etc., though the reson is unknown.</li> </ul> <pre><code>DEFINITION Aspergillus oryzae RIB256 DNA, similar to triacylglycerol lipase, partial sequence. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..555</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Aspergillus oryzae" /<a href="/ddbj/qualifiers-e.html#strain">strain</a>="RIB256" <a href="/ddbj/features-e.html#misc_feature">misc_feature</a> <a href="/ddbj/location-e.html">&lt;1..&gt;555</a> /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="tglA" /<a href="/ddbj/qualifiers-e.html#note">note</a>="similar to triacylglycerol lipase; coding region not specified" </code></pre> <h2 id="C">C: EST, GSS, marker</h2> <h3 id="C01">C01) EST (Expressed Sequence Tag)</h3> <p>See also <a href="/ddbj/est-e.html">EST division</a>.</p> <pre><code>DEFINITION Mus musculus cDNA, clone: 2310009B01, 3' end sequence, expressed in tongue. KEYWORDS EST; 3'-end sequence (3'-EST). FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..267</a> /<a href="/ddbj/qualifiers-e.html#clone">clone</a>="2310009B01" /<a href="/ddbj/qualifiers-e.html#clone_lib">clone_lib</a>="RIKEN full-length enriched mouse tongue cDNA library A502" /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#dev_stage">dev_stage</a>="adult" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="mRNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Mus musculus" /<a href="/ddbj/qualifiers-e.html#sex">sex</a>="male" /<a href="/ddbj/qualifiers-e.html#tissue_type">tissue_type</a>="tongue" </code></pre> <h3 id="C02">C02) GSS (Genome Survey Sequence)</h3> <p>See also <a href="/ddbj/gss-e.html">GSS division</a>.</p> <pre><code>DEFINITION Arabidopsis thaliana Columbia DNA, YAC clone: CIC5D1, left end, chromosome 1 between mi303 and mi259. KEYWORDS GSS. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..532</a> /<a href="/ddbj/qualifiers-e.html#chromosome">chromosome</a>="1" /<a href="/ddbj/qualifiers-e.html#clone">clone</a>="YAC clone CIC5D1" /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#ecotype">ecotype</a>="Columbia" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#map">map</a>="between mi303 and mi259" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Arabidopsis thaliana" </code></pre> <h3 id="C03">C03) marker (unknown function)</h3> <p>An example of the sequence region whose functional feature is unknown.</p> <pre><code>DEFINITION Sus scrofa DNA, marker region of XXX disease, clone:AA12345. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..200</a> /<a href="/ddbj/qualifiers-e.html#chromosome">chromosome</a>="1" /<a href="/ddbj/qualifiers-e.html#clone">clone</a>="AA12345" /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Sus scrofa" <a href="/ddbj/features-e.html#primer_bind">primer_bind</a> <a href="/ddbj/location-e.html">1..20</a> /<a href="/ddbj/qualifiers-e.html#PCR_conditions">PCR_conditions</a>="30 cycles 94degC 30 sec, 56degC 30 sec and 72degC 30 sec" <a href="/ddbj/features-e.html#misc_feature">misc_feature</a> <a href="/ddbj/location-e.html">21..179</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="marker region of XXX disease" <a href="/ddbj/features-e.html#primer_bind">primer_bind</a> <a href="/ddbj/location-e.html">complement(180..200)</a> </code></pre> <h2 id="D">D: Repeat</h2> <h3 id="D01.1">D01.1) microsatellite, recommended annotation</h3> <pre><code>DEFINITION Bos taurus DNA, microsatellite: 3456P. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..300</a> /<a href="/ddbj/qualifiers-e.html#chromosome">chromosome</a>="11" /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#map">map</a>="11p" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Bos taurus" <a href="/ddbj/features-e.html#primer_bind">primer_bind</a> <a href="/ddbj/location-e.html">20..40</a> /<a href="/ddbj/qualifiers-e.html#PCR_conditions">PCR_conditions</a>="denaturation 94degC 2 min; 30 cycles 94degC 30 sec, 56degC 1 min, 72degC 1 min; final extention 72degC 1 min" <a href="/ddbj/features-e.html#repeat_region">repeat_region</a> <a href="/ddbj/location-e.html">60..200</a> /<a href="/ddbj/qualifiers-e.html#rpt_type">rpt_type</a>=tandem /<a href="/ddbj/qualifiers-e.html#rpt_unit_seq">rpt_unit_seq</a>="ta" /<a href="/ddbj/qualifiers-e.html#satellite">satellite</a>="microsatellite: 3456P" <a href="/ddbj/features-e.html#primer_bind">primer_bind</a> <a href="/ddbj/location-e.html">complement(210..230)</a> </code></pre> <h3 id="D01.2">D01.2) microsatellite, minimal annotation</h3> <pre><code>DEFINITION Paralichthys olivaceus DNA, microsatellite: Poli1TUF. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..222</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Paralichthys olivaceus" <a href="/ddbj/features-e.html#repeat_region">repeat_region</a> <a href="/ddbj/location-e.html">25..94</a> /<a href="/ddbj/qualifiers-e.html#rpt_type">rpt_type</a>=tandem /<a href="/ddbj/qualifiers-e.html#rpt_unit_seq">rpt_unit_seq</a>="ca" /<a href="/ddbj/qualifiers-e.html#satellite">satellite</a>="microsatellite: Poli1TUF" </code></pre> <h3 id="D02">D02) transposon</h3> <pre><code>DEFINITION Escherichia coli transposon Tn2000 DNA, complete sequence. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..5000</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Escherichia coli" <a href="/ddbj/features-e.html#mobile_element">mobile_element</a> <a href="/ddbj/location-e.html">1..5000</a> /<a href="/ddbj/qualifiers-e.html#mobile_element_type">mobile_element_type</a>="transposon:Tn2000" <a href="/ddbj/features-e.html#repeat_region">repeat_region</a> <a href="/ddbj/location-e.html">1..100</a> /<a href="/ddbj/qualifiers-e.html#rpt_type">rpt_type</a>=inverted <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">146..1576</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#product">product</a>="transposase" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=11 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">2785..3585</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#product">product</a>="streptomycin phosphotransferase" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=11 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#repeat_region">repeat_region</a> <a href="/ddbj/location-e.html">4900..5000</a> /<a href="/ddbj/qualifiers-e.html#rpt_type">rpt_type</a>=inverted </code></pre> <h3 id="D03">D03) insertion sequence</h3> <pre><code>DEFINITION Streptomyces coelicolor A456 insertion sequence IS123 DNA, complete sequence. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..2000</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Streptomyces coelicolor" /<a href="/ddbj/qualifiers-e.html#strain">strain</a>="A456" <a href="/ddbj/features-e.html#repeat_region">repeat_region</a> <a href="/ddbj/location-e.html">44..48</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>=target sequence /<a href="/ddbj/qualifiers-e.html#rpt_type">rpt_type</a>=flanking <a href="/ddbj/features-e.html#mobile_element">mobile_element</a> <a href="/ddbj/location-e.html">49..1166</a> /<a href="/ddbj/qualifiers-e.html#mobile_element_type">mobile_element_type</a>="insertion sequence:IS123" <a href="/ddbj/features-e.html#repeat_region">repeat_region</a> <a href="/ddbj/location-e.html">49..78</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="30nt perfect inverted repeat" /<a href="/ddbj/qualifiers-e.html#rpt_type">rpt_type</a>=inverted <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">271..1110</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="tnpA" /<a href="/ddbj/qualifiers-e.html#product">product</a>="transposase" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=11 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#repeat_region">repeat_region</a> <a href="/ddbj/location-e.html">1137..1166</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="30nt perfect inverted repeat" /<a href="/ddbj/qualifiers-e.html#rpt_type">rpt_type</a>=inverted <a href="/ddbj/features-e.html#repeat_region">repeat_region</a> <a href="/ddbj/location-e.html">1167..1171</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="target sequence" /<a href="/ddbj/qualifiers-e.html#rpt_type">rpt_type</a>=flanking </code></pre> <h2 id="E">E: Particular resources</h2> <h3 id="E01">E01) environmental sample sequence</h3> <p>See also <a href="/ddbj/env-e.html">environmental samples</a>.</p> <pre><code>DEFINITION Uncultured bacterium 4-11 gene for 16S rRNA, partial sequence. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..1475</a> /<a href="/ddbj/qualifiers-e.html#clone">clone</a>="4-11" /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#environmental_sample">environmental_sample</a> /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#isolation_source">isolation_source</a>="solid waste compost" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="uncultured bacterium" <a href="/ddbj/features-e.html#rRNA">rRNA</a> <a href="/ddbj/location-e.html">&lt;1..&gt;1475</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="16S rRNA" </code></pre> <h3 id="E02">E02) organism name with sp. (unidentified species)</h3> <pre><code>DEFINITION Eirene sp. EML1 GAPDH mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..245</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="mRNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Eirene sp. EML1" /<a href="/ddbj/qualifiers-e.html#strain">strain</a>="EML1" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">&lt;1..&gt;245</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=3 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="GAPDH" /<a href="/ddbj/qualifiers-e.html#product">product</a>="glyceraldehyde-3-phosphate dehydrogenase" /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" </code></pre> <h3 id="E03">E03) natural plasmid</h3> <pre><code>DEFINITION Rhodococcus rhodochrous IFO 3338 plasmid pRC4 repA, repB genes for replication protein, DNA-binding replication protein, complete cds. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..2582</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Rhodococcus rhodochrous" /<a href="/ddbj/qualifiers-e.html#plasmid">plasmid</a>="pRC4" /<a href="/ddbj/qualifiers-e.html#strain">strain</a>="IFO 3338" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">1142..2062</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="repA" /<a href="/ddbj/qualifiers-e.html#product">product</a>="replication protein" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=11 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">2052..2333</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="repB" /<a href="/ddbj/qualifiers-e.html#product">product</a>="DNA-binding replication protein" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=11 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" </code></pre> <h3 id="E04">E04) cloning vector</h3> <pre><code>DEFINITION Cloning vector pAP3neo DNA, complete sequence. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source </a> <a href="/ddbj/location-e.html">1..5350</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="missing:synthetic construct" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="missing:synthetic construct" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="other DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Cloning vector pAP3neo" <a href="/ddbj/features-e.html#rep_origin">rep_origin</a> <a href="/ddbj/location-e.html">572..1452</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="ColE1-derived plasmid replication origin" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">complement(1513..2373)</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="Amp" /<a href="/ddbj/qualifiers-e.html#product">product</a>="beta-lactamase" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=11 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#rep_origin">rep_origin</a> <a href="/ddbj/location-e.html">2504..2959</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="phage f1 region" <a href="/ddbj/features-e.html#regulatory">regulatory</a> <a href="/ddbj/location-e.html">3290..3485</a> /<a href="/ddbj/qualifiers-e.html#note">note=</a>"SV40 early promoter" /<a href="/ddbj/qualifiers-e.html#regulatory_class">regulatory_class</a>="promoter" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">3596..4390</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="neo" /<a href="/ddbj/qualifiers-e.html#product">product</a>="neomycin phosphotransferase" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=11 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#regulatory">regulatory</a> <a href="/ddbj/location-e.html">4788..4983</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="SV40 early promoter" /<a href="/ddbj/qualifiers-e.html#regulatory_class">regulatory_class</a>="promoter" <a href="/ddbj/features-e.html#regulatory">regulatory</a> <a href="/ddbj/location-e.html">5188..5207</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="T7 promoter" /<a href="/ddbj/qualifiers-e.html#regulatory_class">regulatory_class</a>="promoter" <a href="/ddbj/features-e.html#regulatory">regulatory</a> <a href="/ddbj/location-e.html">5302..5321</a> /<a href="/ddbj/qualifiers-e.html#note">note</a>="T3 promoter" /<a href="/ddbj/qualifiers-e.html#regulatory_class">regulatory_class</a>="promoter" </code></pre> <h3 id="E05">E05) synthetic construct</h3> <pre><code>DEFINITION Synthetic construct gene for Rai-chu 101, complete cds. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..2223</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="missing:synthetic construct" /<a href="/ddbj/qualifiers-e.html#focus">focus</a> /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="missing:synthetic construct" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="other DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="synthetic construct" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">1..2223</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=1 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="Rai-chu 101" /<a href="/ddbj/qualifiers-e.html#note">note</a>="fusion protein, Ras and interacting protein chimeric unit 101" /<a href="/ddbj/qualifiers-e.html#product">product</a>="Rai-chu 101" /<a href="/ddbj/qualifiers-e.html#transl_table">transl_table</a>=11 /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">724..1239</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="missing:synthetic construct" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="missing:synthetic construct" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>=other DNA"" /<a href="/ddbj/qualifiers-e.html#note">note</a>="derived from human H-Ras cDNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1258..1500</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="missing:synthetic construct" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="missing:synthetic construct" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>=other DNA"" /<a href="/ddbj/qualifiers-e.html#note">note</a>="derived from human Raf cDNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" </code></pre> <h3 id="E06.1">E06.1) miRNA mature transcript</h3> <pre><code>DEFINITION Arabidopsis thaliana miR840 miRNA. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..21</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="transcribed RNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Arabidopsis thaliana" <a href="/ddbj/features-e.html#ncRNA">ncRNA</a> <a href="/ddbj/location-e.html">1..21</a> /<a href="/ddbj/qualifiers-e.html#ncRNA_class">ncRNA_class</a>="miRNA" /<a href="/ddbj/qualifiers-e.html#product">product</a>="miR840" </code></pre> <h3 id="E06.2">E06.2) miRNA precursor transcript</h3> <pre><code>DEFINITION Arabidopsis thaliana miR840-843 polycistronic noncoding RNA. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..2223</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="transcribed RNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Arabidopsis thaliana" <a href="/ddbj/features-e.html#precursor_RNA">precursor_RNA</a> <a href="/ddbj/location-e.html">1..1342</a> /<a href="/ddbj/qualifiers-e.html#product">product</a>="miR840-843 polycistronic noncoding RNA" <a href="/ddbj/features-e.html#ncRNA">ncRNA</a> <a href="/ddbj/location-e.html">98..119</a> /<a href="/ddbj/qualifiers-e.html#ncRNA_class">ncRNA_class</a>="miRNA" /<a href="/ddbj/qualifiers-e.html#product">product</a>="miR840" <a href="/ddbj/features-e.html#ncRNA">ncRNA</a> <a href="/ddbj/location-e.html">1177..1197</a> /<a href="/ddbj/qualifiers-e.html#ncRNA_class">ncRNA_class</a>="miRNA" /<a href="/ddbj/qualifiers-e.html#product">product</a>="miR843" </code></pre> <h2 id="F">F: Variation</h2> <h3 id="F01">F01) polymorphism and variation</h3> <p>See also <a href="/ddbj/representative-sequence-e.html">representative submissions of identical sequences for variation studies</a>.</p> <pre><code>DEFINITION Homo sapiens IGF1R mRNA for insulin-like growth factor I receptor, partial cds. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..1000</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="mRNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">&lt;1..&gt;1000</a> /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=2 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="IGF1R" /<a href="/ddbj/qualifiers-e.html#product">product</a>="insulin-like growth factor I recep tor" /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#variation">variation</a> <a href="/ddbj/location-e.html">100</a> /<a href="/ddbj/qualifiers-e.html#inference">inference</a>="similar to DNA sequence (same species):INSD:AB000000.1" /<a href="/ddbj/qualifiers-e.html#note">note</a>="polymorphism" /<a href="/ddbj/qualifiers-e.html#note">note</a>="This substitution causes an amino acid substitution from Ala to Thr." /<a href="/ddbj/qualifiers-e.html#replace">replace</a>="a" </code></pre> <h3 id="F02">F02) candidates of polymorphism found by direct sequencing of diploid genome</h3> <pre><code> FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..426</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="mRNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" <a href="/ddbj/features-e.html#variation">variation</a> <a href="/ddbj/location-e.html">260</a> /<a href="/ddbj/qualifiers-e.html#experiment">experiment</a>="heterozygous SNP detection from direct sequencing" /<a href="/ddbj/qualifiers-e.html#note">note</a>="putative SNP, T/C" <a href="/ddbj/features-e.html#variation">variation</a> <a href="/ddbj/location-e.html">342</a> /<a href="/ddbj/qualifiers-e.html#experiment">experiment</a>="heterozygous SNP detection from direct sequencing" /<a href="/ddbj/qualifiers-e.html#note">note</a>="putative SNP, T/C" BASE COUNT 164 a 55 c 55 g 150 t ORIGIN 1 gagccacatc aagatcacca tatttcagcg gatcatcagc tttctcccct actatagtat 61 cctcagataa agagaccatt gagattatag acctagctaa gaaagattta gagaagctga 121 aaagaaaaga aaagaagaag aaaaaaaggt agtgttataa aatcactttt atatgaatct 181 ctattcttct cacttttaag gatattttaa tttgcagttg caatgagtat atataacctc 241 atttttaaaa atgaaatgt<font color="#ff0000">y</font> atttaacata gattataatt atatattttt aaagatttat 301 ctcttcctta tatgtaaaaa attaaattaa ttacaataat a<font color="#ff0000">y</font>ggtagtga attttattta 361 gactatgata aggtaaaatt actattagaa attattttat tatttcttca actagctgcc 421 tttgca // </code></pre> <h2 id="G">G: Sequencing gap</h2> <h3 id="G01">G01) entry with unknown gaps</h3> <pre><code>DEFINITION Homo sapiens HLA-A gene for MHC class I antigen, partial cds, allele: HLA-A*2601V1. FEATURES Location/Qualifiers <a href="/ddbj/features-e.html#source">source</a> <a href="/ddbj/location-e.html">1..1022</a> /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2007" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="Japan" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#note">note</a>="HLA-A*2601V1/2402,B*4001/4002,DRB1*0901/1401, TBC191371" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" <a href="/ddbj/features-e.html#cds">CDS</a> <a href="/ddbj/location-e.html">join(&lt;1..270,371..646,747..&gt;1022)</a> /<a href="/ddbj/qualifiers-e.html#allele">allele</a>="HLA-A*2601V1" /<a href="/ddbj/qualifiers-e.html#codon_start">codon_start</a>=3 /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="HLA-A" /<a href="/ddbj/qualifiers-e.html#product">product</a>="MHC class I antigen" /<a href="/ddbj/qualifiers-e.html#translation">translation</a>="--- omitted ---" <a href="/ddbj/features-e.html#exon">exon</a> <a href="/ddbj/location-e.html">1..270</a> /<a href="/ddbj/qualifiers-e.html#allele">allele</a>="HLA-A*2601V1" /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="HLA-A" /<a href="/ddbj/qualifiers-e.html#number">number</a>=2 <a href="/ddbj/features-e.html#gap">gap</a> <a href="/ddbj/location-e.html">271..370</a> /<a href="/ddbj/qualifiers-e.html#estimated_length">estimated_length</a>=unknown <a href="/ddbj/features-e.html#exon">exon</a> <a href="/ddbj/location-e.html">371..646</a> /<a href="/ddbj/qualifiers-e.html#allele">allele</a>="HLA-A*2601V1" /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="HLA-A" /<a href="/ddbj/qualifiers-e.html#number">number</a>=3 <a href="/ddbj/features-e.html#gap">gap</a> <a href="/ddbj/location-e.html">647..746</a> /<a href="/ddbj/qualifiers-e.html#estimated_length">estimated_length</a>=unknown <a href="/ddbj/features-e.html#exon">exon</a> <a href="/ddbj/location-e.html">747..1022</a> /<a href="/ddbj/qualifiers-e.html#allele">allele</a>="HLA-A*2601V1" /<a href="/ddbj/qualifiers-e.html#gene">gene</a>="HLA-A" /<a href="/ddbj/qualifiers-e.html#number">number</a>=4 BASE COUNT 166 a 249 c 288 g 119 t ORIGIN 1 gctcccactc catgaggtat ttctacacct ccgtgtcccg gcccggccgc ggggagcccc 61 gcttcatcgc cgtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg 121 cgagccagag gatggagccg cgggcgccgt ggatagagca ggaggggccg gagtattggg 181 accggaacac acggaatgtg aaggcccact cacagactga ccgagcgaac ctggggaccc 241 tgcgcggcta ctacaaccag agcgaggacg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 361 nnnnnnnnnn gttctcacac cgtccagagg atgtatggct gcgacgtggg gccggacggg 421 cgcttcctcc gcgggtacca gcaggacgct tacgacggca aggattacat cgccctgaac 481 gaggacctgc gctcttggac cgcggcggac atggcggctc agatcaccca gcgcaagtgg 541 gagacggccc atgaggcgga gcagtggaga gcctacctgg agggccggtg cgtggagtgg 601 ctccgcagat acctggagaa cgggaaggag acgctgcagc gcacggnnnn nnnnnnnnnn 661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 721 nnnnnnnnnn nnnnnnnnnn nnnnnnacgc ccccaagacg catatgactc accacgctgt 781 ctctgaccat gaggccaccc tgaggtgctg ggccctgagc ttctaccctg cggagatcac 841 actgacctgg cagcgggatg gggaggacca gacccaggac acggagctcg tggagaccag 901 gcctgcaggg gatgggacct tccagaagtg ggcgtctgtg gtggtgcctt ctggacagga 961 gcagagatac acctgccatg tgcagcatga gggtctgccc aagcccctca ccctgagatg 1021 gg //</code></pre> </main> <aside class="related-pages"> <h2 class="caption">Related pages</h2> <div class="navigation"> <nav> <ul> <li> <a href="/ddbj/flat-file-e.html">DDBJ flat file format</a> </li> <li> <a href="/ddbj/features-e.html">Feature Key</a> </li> <li> <a href="/ddbj/qualifiers-e.html">Qualifier key</a> </li> <li> <a href="/ddbj/organism-e.html">Organism qualifier</a> </li> <li> <a href="/ddbj/location-e.html">Description of Location</a> </li> <li> <a href="/ddbj/cds-e.html">Protein Coding Sequence; CDS feature</a> </li> <li> <a href="/ddbj/geneticcode-e.html">The Genetic Codes</a> </li> <li> <a href="/ddbj/code-e.html">Codes Used in Sequence Description</a> </li> </ul> </nav> </div> </aside> </section> </div> </section> </div> <footer></footer> <div id="back-top"></div> </body> </html>

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