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Bioconductor AnVIL Projects • BiocAnVIL

<!DOCTYPE html> <!-- Generated by pkgdown: do not edit by hand --><html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <title>Bioconductor AnVIL Projects • BiocAnVIL</title> <!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/yeti/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous"> <script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="bootstrap-toc.css"> <script src="bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"> <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"> <!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="pkgdown.css" rel="stylesheet"> <script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"> <meta property="og:title" content="Bioconductor AnVIL Projects"> <meta property="og:description" content="Bioconductor contributes R / Bioconductor Jupyter notebooks, RStudio / Bioconductor docker images, AnVIL packages, fast binary installation packages, workshops, and training materials to AnVIL."> <!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> <![endif]--><!-- Global site tag (gtag.js) - Google Analytics --><script async src="https://www.googletagmanager.com/gtag/js?id=UA-93043521-1"></script><script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'UA-93043521-1'); </script> </head> <body data-spy="scroll" data-target="#toc"> <div class="container template-home"> <header><div class="navbar navbar-default navbar-fixed-top" role="navigation"> <div class="container"> <div class="navbar-header"> <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar"></span> <span class="icon-bar"></span> <span class="icon-bar"></span> </button> <span class="navbar-brand"> <a class="navbar-link" href="index.html">BiocAnVIL</a> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.0.10</span> </span> </div> <div id="navbar" class="navbar-collapse collapse"> <ul class="nav navbar-nav"> <li> <a href="index.html">Home</a> </li> <li class="dropdown"> <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false"> Project <span class="caret"></span> </a> <ul class="dropdown-menu" role="menu"> <li> <a href="articles/overview.html">Overview</a> </li> <li> <a href="articles/images.html">Docker Images</a> </li> <li> <a href="articles/binrepo.html">Binary Repository Generation</a> </li> <li> <a href="articles/packages.html">Bioconductor Packages</a> </li> <li> <a href="articles/training.html">Training</a> </li> <li> <a href="articles/team.html">Team</a> </li> <li> <a href="articles/updating.html">Updating the Website</a> </li> </ul> </li> </ul> <ul class="nav navbar-nav navbar-right"> <li> <a href="https://github.com/Bioconductor/BiocAnVIL" class="external-link"> <span class="fab fa-github fa-lg"></span> </a> </li> </ul> </div> <!--/.nav-collapse --> </div> <!--/.container --> </div> <!--/.navbar --> </header><div class="row"> <div class="contents col-md-9"> <div class="section level2"> <h2 id="bioconductor-for-anvil">Bioconductor for AnVIL<a class="anchor" aria-label="anchor" href="#bioconductor-for-anvil"></a> </h2> <p>Bioconductor is available in <a href="https://anvilproject.org" class="external-link">NHGRI’s Analysis and VIsualization Laboratory (AnVIL)</a>. <a href="https://anvil.terra.bio" class="external-link">AnVIL</a> is a US National Institutes of Health / National Human Genome Research Institute initiative powered by Terra to provide a secure cloud environment for genomic data science analysis, visualization, and informatics. AnVIL provides the ability to launch RStudio, Jupyter notebook, and other R / Bioconductor resources in a computational cloud.</p> <p>Bioconductor contributes R / Bioconductor Jupyter notebooks, RStudio / Bioconductor docker images, AnVIL packages, fast binary installation packages, workshops, and training materials to AnVIL.</p> <div class="section level3"> <h3 id="bioconductors-work-in-anvil">Bioconductor’s work in AnVIL<a class="anchor" aria-label="anchor" href="#bioconductors-work-in-anvil"></a> </h3> <ul> <li> <a href="articles/images.html">Docker images</a> for use in Terra</li> <li> <a href="articles/binrepo.html">Binary repositories</a> for Bioconductor software</li> <li><a href="articles/packages.html">Bioconductor packages</a></li> <li><a href="articles/training.html">AnVIL Training</a></li> </ul> </div> <div class="section level3"> <h3 id="use-bioconductor-in-anvil">Use Bioconductor in AnVIL<a class="anchor" aria-label="anchor" href="#use-bioconductor-in-anvil"></a> </h3> <p>Visit <a href="https://anvilproject.org/" class="external-link">anvilproject.org</a> to learn more about AnVIL or <a href="https://anvilproject.org/learn/interactive-analysis/getting-started-with-bioconductor" class="external-link">get started</a> with Bioconductor in AnVIL.</p> </div> </div> </div> <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar"> <div class="links"> <h2 data-toc-skip>Links</h2> <ul class="list-unstyled"> <li><a href="https://github.com/Bioconductor/BiocAnVIL/" class="external-link">Browse source code</a></li> <li><a href="https://github.com/Bioconductor/BiocAnVIL/issues" class="external-link">Report a bug</a></li> </ul> </div> <div class="license"> <h2 data-toc-skip>License</h2> <ul class="list-unstyled"> <li><a href="https://www.r-project.org/Licenses/Artistic-2.0" class="external-link">Artistic-2.0</a></li> </ul> </div> <div class="citation"> <h2 data-toc-skip>Citation</h2> <ul class="list-unstyled"> <li><a href="authors.html#citation">Citing BiocAnVIL</a></li> </ul> </div> <div class="developers"> <h2 data-toc-skip>Developers</h2> <ul class="list-unstyled"> <li>Bioc-AnVIL Team <br><small class="roles"> Author, maintainer </small> </li> </ul> </div> </div> </div> <footer><div class="copyright"> <p></p> <p>Developed by Bioc-AnVIL Team.</p> </div> <div class="pkgdown"> <p></p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p> </div> </footer> </div> </body> </html>

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