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</label> <input id="search" name="search" type="search" required="required" class="field search__input"> <button type="submit" class="btn search__submit"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--search icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#search"></use></svg></button></div> <div class="text-sm"> e.g. <a href="/search/blast">BLAST</a>, <a href="/search/uniprot">UniProt</a>, <a href="/search/msh6">MSH6</a>, <a href="/search/albumin">Albumin</a>... </div> </form></div> <div class="container"><div class="resource-page"><div class="flex-grid flex-grid--md flex-grid--even"><div class="lg:w-2/3 xl:w-3/4 flex-grid__item w-full"><section class="flex flex-col pt-5 max-md:pb-5 border-neutral-200 border-t"><div class="flex-auto"><div class="mb-3 md:flex md:items-center"><div class="md:flex-1"><h1 class="mb-5"> TASmania </h1></div> <ul aria-label="Resource categories and types" class="resource-page__filters"><li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="text-primary-500 icon icon--gene icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <div class="flex-1"> Genomics </div></li> <li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <div class="flex-1"> Database </div></li></ul></div> <div class="mb-8">TASmania is a database compiling over 2 million putative Toxin-Antitoxin loci (TAS) from over 41,000 bacterial genome assemblies, and enables users to identify and discover existing and new TAS in a given genome. For other genomes (not found in TASmania) please use TASer.</div> <div class="flex flex-col items-start gap-8 lg:items-center lg:gap-12 lg:flex-row"><div class="flex items-start justify-center lg:justify-start"><a href="https://shiny.bioinformatics.unibe.ch/apps/tasmania/" target="_blank" rel="noopener noreferer" class="btn btn--primary"> Browse the resource website </a></div> <div class="flex flex-col items-start gap-3"><div><a href="https://www.youtube.com/watch?v=Mo-fhr1Ee5U" target="_blank" rel="noopener noreferer" class="flex items-center gap-2 no-underline"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--play icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#play"></use></svg> <span>Watch the video</span></a></div>  </div></div></div> <footer class="p-5 resource-page__info bg-neutral-100 border-neutral-200 border-t border-b"><div><p>Developed by the <a href="https://www.sib.swiss/laurent-falquet-group" rel="noopener noreferrer 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class="inline-block"><a href="/search/Function%20analysis?type=keyword"> Function analysis </a><span>,聽</span></li><li class="inline-block"><a href="/search/Microbiology?type=keyword"> Microbiology </a></li></ul></section></div></aside></div></div> <section class="py-5 mt-10 border-neutral-200 border-t"><h2 class="mb-5 h3"> You might also be interested in </h2> <ul class="flex-grid flex-grid--multiline flex-grid--even"><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" 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sheets about viruses linked to sequence databases </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/orthodb" class="resource__link"><h3 class="h5"> OrthoDB </h3></a> <div 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href="/resources/hamap-scan" class="resource__link"><h3 class="h5"> HAMAP-Scan </h3></a> <div class="text-sm leading-snug mt-1"> Scanning of protein sequences against HAMAP families </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database 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class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/taser" class="resource__link"><h3 class="h5"> TASer </h3></a> <div class="text-sm leading-snug mt-1"> Search tool associated to TASmania </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny 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Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/uniprot-sparql-endpoint" class="resource__link"><h3 class="h5"> UniProt SPARQL endpoint </h3></a> <div class="text-sm leading-snug mt-1"> SPARQL access to UniProt and related data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/hamap-sparql-endpoint" class="resource__link"><h3 class="h5"> HAMAP SPARQL endpoint </h3></a> <div class="text-sm leading-snug mt-1"> SPARQL access to the HAMAP annotation rules </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/scanprosite" class="resource__link"><h3 class="h5"> ScanProsite </h3></a> <div class="text-sm leading-snug mt-1"> Protein sequences against PROSITE </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" 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A licence is required for private companies.","http:\u002F\u002Fwww.swissdock.ch\u002Fpages\u002Ffeedback","Contact the team","2020-07-16T11:12:03.000000Z","2022-04-14T10:30:15.000000Z",25,"the GNU Affero General Public License","https:\u002F\u002Fwww.gnu.org\u002Flicenses\u002Fagpl-3.0.en.html","GNU AGPL",685,"TASmania","tasmania","https:\u002F\u002Fshiny.bioinformatics.unibe.ch\u002Fapps\u002Ftasmania\u002F","Toxin-antitoxin database","2020-07-24T12:39:30.000000Z","2024-08-15T09:42:59.000000Z","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=Mo-fhr1Ee5U","ViralZone","viralzone","https:\u002F\u002Fviralzone.expasy.org\u002F","https:\u002F\u002Fwww.sib.swiss\u002Ftraining\u002Fcourse\u002F2023_VRLZN","Fact sheets about viruses linked to sequence databases","2024-08-21T12:47:48.000000Z","\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Falan-bridge-group\" rel=\"noopener noreferrer nofollow\"\u003ESwiss-Prot group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E","OrthoDB","orthodb","https:\u002F\u002Fwww.orthodb.org\u002F","https:\u002F\u002Fwww.ezlab.org\u002Forthodb_userguide.html","Ortholog evolutionary and functional annotations","2024-10-16T11:49:55.000000Z",626,"UniProtKB\u002FSwiss-Prot","uniprotkb-swiss-prot","https:\u002F\u002Fwww.uniprot.org\u002Funiprotkb?facets=reviewed%3Atrue&query=%2A","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=JSQj_Y1xMgo","Protein knowledgebase","2020-06-30T15:41:28.000000Z","2024-11-11T14:11:35.000000Z","UniProtKB","uniprotkb","https:\u002F\u002Fwww.uniprot.org\u002F","https:\u002F\u002Fwww.youtube.com\u002Fc\u002Funiprotvideos\u002Ffeatured","Protein sequence database","2024-11-11T12:53:01.000000Z",644,"HAMAP-Scan","hamap-scan","https:\u002F\u002Fhamap.expasy.org\u002Fhamap-scan\u002F","https:\u002F\u002Fhamap.expasy.org\u002Fhamap-scan\u002Fhamap_scan_userman.html","Scanning of protein sequences against HAMAP families","2020-06-30T18:14:20.000000Z","2024-08-14T13:27:26.000000Z","HAMAP","hamap","https:\u002F\u002Fhamap.expasy.org\u002F","https:\u002F\u002Fhamap.expasy.org\u002Fweb_view_HAMAP_profiles.html","UniProtKB family classification and annotation","2024-09-12T09:31:51.000000Z",686,"TASer","taser","https:\u002F\u002Fshiny.bioinformatics.unibe.ch\u002Fapps\u002Ftaser\u002F","Search tool associated to TASmania","2020-07-24T12:42:30.000000Z","2024-07-31T09:44:32.000000Z",689,"OrthoDB SPARQL endpoint","orthodb-sparql-endpoint","https:\u002F\u002Fsparql.orthodb.org\u002F","https:\u002F\u002Fsparql.orthodb.org\u002Fwidoco\u002Findex-en.html","SPARQL access to the OrthoDB catalog of orthologs","2020-08-31T09:49:24.000000Z","2024-10-14T14:59:34.000000Z",692,"UniProt SPARQL endpoint","uniprot-sparql-endpoint","https:\u002F\u002Fsparql.uniprot.org","https:\u002F\u002Fpurl.uniprot.org\u002Fhtml\u002Findex-en.html#","https:\u002F\u002Fgithub.com\u002Fsib-swiss\u002Fsparql-training\u002Ftree\u002Fmaster\u002Funiprot","SPARQL access to UniProt and related data","2020-10-27T11:07:43.000000Z","2024-11-11T15:11:26.000000Z",691,"HAMAP SPARQL endpoint","hamap-sparql-endpoint","https:\u002F\u002Fhamap.expasy.org\u002Fsparql","https:\u002F\u002Facademic.oup.com\u002Fgigascience\u002Farticle\u002F9\u002F2\u002Fgiaa003\u002F5731417","SPARQL access to the HAMAP annotation rules","2020-10-27T11:03:40.000000Z","2024-07-23T09:55:54.000000Z",671,"ScanProsite","scanprosite","https:\u002F\u002Fprosite.expasy.org\u002Fscanprosite\u002F","https:\u002F\u002Fprosite.expasy.org\u002Fscanprosite\u002Fscanprosite_doc.html","Protein sequences against PROSITE","2020-07-01T18:48:11.000000Z","2024-08-14T13:34:16.000000Z",693,"OrthoLoger","orthologer","https:\u002F\u002Forthologer.ezlab.org\u002F","https:\u002F\u002Fwww.orthodb.org\u002Forthodb_userguide.html#standalone-orthologer-software","Accurate and scalable inference of groups of orthologs","2020-10-29T07:59:19.000000Z","2024-10-16T11:57:29.000000Z","OMA","oma","https:\u002F\u002Fomabrowser.org\u002Foma\u002Fhome\u002F","https:\u002F\u002Fomabrowser.org\u002Foma\u002Fuses\u002F","https:\u002F\u002Fomabrowser.org\u002Foma\u002Facademy\u002F","Orthology inference among complete genomes","2024-10-16T12:08:05.000000Z","VenomZone","venom-zone","https:\u002F\u002Fvenomzone.expasy.org\u002F","Portal to venom protein UniProtKB entries","2022-11-25T16:26:58.000000Z",633,"ABCD","abcd","https:\u002F\u002Fweb.expasy.org\u002Fabcd\u002F","Database of chemically defined antibodies","2020-06-30T17:01:34.000000Z","2024-07-31T09:58:16.000000Z",735,"Protein Universe Atlas","protein-universe-atlas","https:\u002F\u002Funiprot3d.org\u002F","Interactive, annotated similarity network of all proteins","2024-01-25T14:33:56.000000Z","2024-09-26T16:00:07.000000Z",575,"SugarBind","sugarbind","https:\u002F\u002Fsugarbind.expasy.org","https:\u002F\u002Fsugarbind.expasy.org\u002Fhelp","Pathogen Sugar-Binding Database","2020-06-24T09:25:27.000000Z","2024-08-15T14:25:38.000000Z",699,"SPSP | Swiss Pathogen Surveillance Platform","spsp","https:\u002F\u002Fspsp.ch\u002F","A secure NGS One-health online platform","2020-12-01T11:25:05.000000Z","2024-02-29T13:29:31.000000Z","https:\u002F\u002Fswissmodel.expasy.org\u002F","https:\u002F\u002Fswissmodel.expasy.org\u002Fdocs\u002Fhelp","https:\u002F\u002Fswissmodel.expasy.org\u002Fdocs\u002Ftutorial","fastsimcoal","pftools","MHC Motif Atlas","https:\u002F\u002Fmyhits.sib.swiss\u002Fcgi-bin\u002Fhelp","2024-03-01T14:11:56.000000Z","rawrr","https:\u002F\u002Fwww.bgee.org\u002Fsupport\u002Ftutorials"));</script><script src="/_nuxt/734f39f.js" defer></script><script src="/_nuxt/64c1a2c.js" defer></script><script src="/_nuxt/78684c8.js" defer></script><script src="/_nuxt/e4f4568.js" defer></script><script src="/_nuxt/73b71d2.js" defer></script> </body> </html>