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PDB-101: Topics
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onclick="location.href="/teach/biomolecular-structures-and-models/topics/exploring-biomolecular-structures-and-models"" class="pdb101-left-menu-item"> <div class="pdb101-left-menu-item-text">Exploring Biomolecular Structures and Models</div> <div class="pdb101-left-menu-item-chevron"><span id="chevron-exploring-biomolecular-structures-and-models" class="fa fa-chevron-right"></span> </div> </div> <div onclick="location.href="/teach/biomolecular-structures-and-models/topics/physical-models"" class="pdb101-left-menu-item"> <div class="pdb101-left-menu-item-text">Physical Models</div> <div class="pdb101-left-menu-item-chevron"><span id="chevron-physical-models" class="fa fa-chevron-right fade"></span> </div> </div> </div> </div> <div class="col-xs-12 col-sm-12 col-md-9 pdb101-page-content"> <div class="row"> <div class="col-sm-12 col-md-8"><br> <h1 style="margin-top: 0;">Exploring Biomolecular Structures and Models</h1> <hr> <div class="embed-responsive embed-responsive-4by3"> <iframe type="text/html" width="640" height="390" src="https://www.youtube.com/embed/gMttrbCTVu0?si=ZKSWeYiaYZrvGCPl" frameborder="0" allow="autoplay encrypted-media" allowfullscreen class="embed-responsive-item"></iframe> </div><br> <div class="heading">Additional resources</div> <div style="text-align: left;" class="item"> <h9> RCSB</h9> <ul><a href="http://www.ncbi.nlm.nih.gov/books/NBK21726/" target="_blank"> <li>Non-covalent interactions<span style="margin-left:10px;font-size:13px" class="fa fa-file-text-o"></span></li></a><a href="http://www.cryst.bbk.ac.uk/PPS95/course/3_geometry/index.html" target="_blank"> <li>Protein Structure<span style="margin-left:10px;font-size:13px" class="fa fa-file-text-o"></span></li></a><a href="http://www.nobelprize.org/educational/medicine/dna_double_helix/readmore.html" target="_blank"> <li>Nucleic Acids<span style="margin-left:10px;font-size:13px" class="fa fa-file-text-o"></span></li></a><a href="https://www.youtube.com/watch?v=GfOyZch6llo" target="_blank"> <li>Intro to X-ray crystallography<span style="margin-left:10px;font-size:13px" class="fa fa-file-video-o"></span></li></a><a href="https://www.youtube.com/watch?v=BJKkC0W-6Qk&feature=youtu.be" target="_blank"> <li>A 3 min intro to CryoEM<span style="margin-left:10px;font-size:13px" class="fa fa-file-video-o"></span></li></a><a href="https://www.nakb.org/" target="_blank"> <li>Nucleic Acids KnowledgeBase<span style="margin-left:10px;font-size:13px" class="fa fa-file-text-o"></span></li></a><a href="https://pdb101.rcsb.org/learn/guide-to-understanding-pdb-data/methods-for-determining-structure" target="_blank"> <li>Understanding PDB Data<span style="margin-left:10px;font-size:13px" class="fa fa-file-text-o"></span></li></a> </ul> </div> </div> <div style="margin-top:20px;" class="col-sm-12 col-md-4 page-content-left-half"> <p class="pdb101-left-menu-header">Learning Materials</p> <div class="row"> <ul style="margin-left:-6px;"><a href="https://cdn.rcsb.org/pdb101/teach/files/Intro-to-Biol-Mol-0.pptx"> <li>Intro to Biological Molecules<span style="margin-left:3px;font-size:12px;" class="fa fa-file-powerpoint-o"></span></li></a> </ul> </div><br> <p class="pdb101-left-menu-header">Activities</p> <div class="row"> <ul style="margin-left:-11px;"> <li style="margin-left:5px;"><a href="https://cdn.rcsb.org/pdb101/teach/files/Biomolecules-Read-and-Learn.docx" target="_blank"><span>Read & Learn about Protein Design Assignment<span style="font-size:13px;margin-left:2px;" class="fa fa-file-word-o"> <span style="color:#000;font-size:18px;margin-left:-2px;">, </span></span></span></a><a href="https://pdb101.rcsb.org/motm/70" target="_blank"><span>Protein Design Intro level reading<span style="font-size:13px;margin-left:2px;" class="fa fa-file-text-o"><span style="color:#000;font-size:18px;margin-left:2px;">, </span></span></span></a><a href="https://cdn.rcsb.org/pdb101/teach/files/Biomol-Advanced.pdf" target="_blank"><span>Protein Design Adv level reading<span style="font-size:13px;margin-left:2px;" class="fa fa-file-pdf-o"> </span></span></a> </li> </ul> <ul><a href="https://cdn.rcsb.org/pdb101/teach/files/QFT-Proteins.pptx" target="_blank"> <li style="margin-left:-6px;"> Learning about Proteins QFT activity<span style="margin-left:2px;font-size:13px;" class="fa fa-file-powerpoint-o"></span></li></a></ul> <ul style="margin-left:-11px;"> <li style="margin-left:5px;"><a href="https://cdn.rcsb.org/pdb101/teach/files/Insulin-viz-Intro-0923.docx" target="_blank"><span>Exploring Insulin Structure Intro level Exercise<span style="margin-left:2px;font-size:12px;" class="fa fa-file-word-o"><span style="color:#000;font-size:18px;">, </span></span></span></a><a href="https://cdn.rcsb.org/pdb101/teach/files/Insulin-Vis-adv-0923.docx" target="_blank"><span>Exploring Insulin Structure Adv level Exercise<span style="margin-left:2px;font-size:12px;" class="fa fa-file-word-o"></span></span></a> </li> </ul> <ul style="margin-left:-11px;"> <li style="margin-left:3px;"><a href="https://cdn.rcsb.org/pdb101/teach/files/Exploring-GFP-Intro-0923.docx" target="_blank"><span>Explore GFP Structure Intro level Exercise<span style="margin-left:2px;font-size:13px;" class="fa fa-file-word-o"><span style="color:#000;font-size:18px;">, </span></span></span></a><a href="https://cdn.rcsb.org/pdb101/teach/files/Fluor-Prot-Vis-Adv-MolStar-0923.docx" target="_blank"><span>Explore GFP Structure Adv level Exercise (Mol*)<span style="margin-left:2px;font-size:13px;" class="fa fa-file-word-o"><span style="color:#000;font-size:18px;">, </span></span></span></a><a href="https://cdn.rcsb.org/pdb101/teach/files/Viz-GFP-Advanced.docx" target="_blank"><span>Explore GFP Structure Adv level Exercise (UCSF Chimera)<span style="margin-left:2px;font-size:13px;" class="fa fa-file-word-o"></span></span></a> </li> </ul> <ul><a href="https://cdn.rcsb.org/pdb101/teach/files/GFP-tutorial-20230902.docx" target="_blank"> <li style="margin-left:-8px;"> Bioinformatics of GFP Exercise<span style="margin-left:2px;font-size:13px;" class="fa fa-file-word-o"></span></li></a></ul> <ul style="margin-left:-11px;"> <li style="margin-left:2px;"><a href="https://cdn.rcsb.org/pdb101/teach/files/Exploring-antibodies-Intro-0923.docx" target="_blank"><span>Explore Antibodies Intro level Exercise<span style="margin-left:1px;font-size:13px;" class="fa fa-file-word-o"><span style="color:#000;font-size:18px;">, </span></span></span></a><a href="https://cdn.rcsb.org/pdb101/teach/files/Viz-Antibody-Advanced-RCSB-MolStar-0923.docx" target="_blank"><span>Explore Antibodies Adv level Exercise (Mol*)<span style="margin-left:1px;font-size:13px;" class="fa fa-file-word-o"><span style="color:#000;font-size:18px;">, </span></span></span></a><a href="https://cdn.rcsb.org/pdb101/teach/files/Viz-Antibody-Advanced-RCSB.docx" target="_blank"><span>Explore Antibodies Adv level Exercise (UCSF Chimera)<span style="margin-left:1px;font-size:13px;" class="fa fa-file-word-o"></span></span></a> </li> </ul> <ul><a href="https://cdn.rcsb.org/pdb101/teach/files/Sickle-Cell-Disease-Guide-MolStar-0923.docx" target="_blank"> <li style="margin-left:-8px;">Explore Sickle Cell Disease (Mol*)<span style="margin-left:2px;font-size:13px;" class="fa fa-file-word-o"></span></li></a></ul> <ul style="margin-left:-13px;"> <li style="margin-left:5px;"><a href="https://cdn.rcsb.org/pdb101/teach/files/Enzyme-Catalase-Vis-MolStar-0923.docx" target="_blank"><span>Explore Struct-Function of Catalase (Mol*)<span style="margin-left:2px;font-size:13px;" class="fa fa-file-word-o"><span style="color:#000;font-size:18px;">, </span></span></span></a><a href="https://cdn.rcsb.org/pdb101/teach/files/Enzyme-Catalase-Vis-2.docx" target="_blank"><span>Explore Struct-Function of Catalase (UCSF Chimera)<span style="margin-left:2px;font-size:13px;" class="fa fa-file-word-o"></span></span></a> </li> </ul> </div> </div> </div> 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