Vineet Bafna | UCSD Profiles

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text-decoration: none !important' border='0' width='9' height='9' /> Research Activities and Funding</div><div class='PropertyGroupData'><div id='http://vivoweb.org/ontology/core#hasResearcherRole'><div class='basicInfo scroll'><table class='collapsible grants' width='590px' border='0' cellpadding='5px' cellspacing='3px'><tr><td>Software and algorithms for elucidating the structure, function, and evolution of extrachromosomal DNA<br/><span style='float:left;padding-right:10px'>NIH</span> <span style='float:left'><a href='http://grantome.com/search?q=U24CA264379' target='_blank'>U24CA264379</a></span><span style='float:right;padding-left:10px'>Sep 1, 2021 - Aug 31, 2026</span><br/>Role: Principal Investigator</td></tr><tr><td>Graduate Training Program in Bioinformatics<br/><span style='float:left;padding-right:10px'>NIH</span> <span style='float:left'><a href='http://grantome.com/search?q=T32GM139790' target='_blank'>T32GM139790</a></span><span style='float:right;padding-left:10px'>Jul 1, 2021 - Jun 30, 2026</span><br/>Role: Co-Principal Investigator</td></tr><tr><td>Refining Mendelian disease analysis via detection of clinically relevant repeat variants<br/><span style='float:left;padding-right:10px'>NIH</span> <span style='float:left'><a href='http://grantome.com/search?q=R01HG010149' target='_blank'>R01HG010149</a></span><span style='float:right;padding-left:10px'>Sep 14, 2018 - Jun 30, 2022</span><br/>Role: Co-Principal Investigator</td></tr><tr><td>Computational methods for detecting patterns of complex genomic variation<br/><span style='float:left;padding-right:10px'>NIH</span> <span style='float:left'><a href='http://grantome.com/search?q=R01GM114362' target='_blank'>R01GM114362</a></span><span style='float:right;padding-left:10px'>Jan 1, 2016 - Dec 31, 2023</span><br/>Role: Principal Investigator</td></tr><tr><td>Algorithmic strategies for detecting structural variation in genomes<br/><span style='float:left;padding-right:10px'>NIH</span> <span style='float:left'><a href='http://grantome.com/search?q=R01HG004962' target='_blank'>R01HG004962</a></span><span style='float:right;padding-left:10px'>Apr 1, 2009 - Feb 28, 2014</span><br/>Role: Principal Investigator</td></tr><tr><td>Center for Computational Mass Spectrometry<br/><span style='float:left;padding-right:10px'>NIH</span> <span style='float:left'><a href='http://grantome.com/search?q=P41GM103484' target='_blank'>P41GM103484</a></span><span style='float:right;padding-left:10px'>Sep 20, 2008 - Jun 30, 2021</span><br/>Role: Principal Investigator</td></tr><tr><td>Graduate Training Program in Bioinformatics<br/><span style='float:left;padding-right:10px'>NIH</span> <span style='float:left'><a href='http://grantome.com/search?q=T32GM008806' target='_blank'>T32GM008806</a></span><span style='float:right;padding-left:10px'>Jul 1, 2001 - Jun 30, 2021</span><br/>Role: Principal Investigator</td></tr></table></div> </div></div></div></div><div class='PropertyGroup' tabindex="0" style='cursor:pointer;' onkeypress="if (event.keyCode == 13) javascript:toggleBlock('propertygroup','http://profiles.catalyst.harvard.edu/ontology/prns#PropertyGroupBibliographic');" onclick="javascript:toggleBlock('propertygroup','http://profiles.catalyst.harvard.edu/ontology/prns#PropertyGroupBibliographic');" role="region"><br><img id="propertygrouphttp://profiles.catalyst.harvard.edu/ontology/prns#PropertyGroupBibliographic" src='https://profiles.ucsd.edu/Profile/Modules/PropertyList/images/minusSign.gif' alt='Collapse' style='border: none; text-decoration: none !important' border='0' width='9' height='9'/> <input type='hidden' id="imgonhttp://profiles.catalyst.harvard.edu/ontology/prns#PropertyGroupBibliographic" value='https://profiles.ucsd.edu/Profile/Modules/PropertyList/images/minusSign.gif' alt='Collapse' width='9'/><input type='hidden' id="imgoffhttp://profiles.catalyst.harvard.edu/ontology/prns#PropertyGroupBibliographic" value='https://profiles.ucsd.edu/Profile/Modules/PropertyList/images/plusSign.gif' alt='Expand' />Bibliographic <br></div><div class='PropertyGroupItem' id='http://profiles.catalyst.harvard.edu/ontology/prns#PropertyGroupBibliographic'><input type='hidden' id="imgonhttp://vivoweb.org/ontology/core#authorInAuthorship" value='https://profiles.ucsd.edu/Profile/Modules/PropertyList/images/minusSign.gif' alt='Collapse' width='9' height='9' /><input type='hidden' id="imgoffhttp://vivoweb.org/ontology/core#authorInAuthorship" value='https://profiles.ucsd.edu/Profile/Modules/PropertyList/images/plusSign.gif'alt='Expand' /><div><div class='PropertyItemHeader' style='cursor:pointer;' tabindex="0" onkeypress="if (event.keyCode == 13) javascript:toggleBlock('propertyitem','http://vivoweb.org/ontology/core#authorInAuthorship');" onclick="javascript:toggleBlock('propertyitem','http://vivoweb.org/ontology/core#authorInAuthorship');" role="region"><img id="propertyitemhttp://vivoweb.org/ontology/core#authorInAuthorship" src='https://profiles.ucsd.edu/Profile/Modules/PropertyList/images/minusSign.gif' alt='Collapse' style='border: none; text-decoration: none !important' border='0' width='9' height='9' /> Publications</div><div class='PropertyGroupData'><div id='http://vivoweb.org/ontology/core#authorInAuthorship'> <div class='publicationList'> <div id="ctl01_divPubHeaderText" style="font-weight: bold; color: #888; padding: 5px 0px;"> Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can <a href='https://profiles.ucsd.edu/login/default.aspx?pin=send&method=login&edit=true'>login</a> to make corrections and additions, or <a id="ctl01_Contact" href="mailto:ctri-support@ucsd.edu">contact us for help</a>. to make corrections and additions. </div> <div class="anchor-tab" id="divDisplayType"> <a class='selected' tabindex="0" id="aNewest">Newest</a>   |   <a tabindex="0" id="aOldest">Oldest</a>   |   <a tabindex="0" id="aMostCited">Most Cited</a>   |   <a tabindex="0" id="aMostDiscussed">Most Discussed</a>   |   <a tabindex="0" id="aTimeline" class="link-visualization">Timeline</a>   |   <a tabindex="0" id="aFieldSummary" class="link-visualization">Field Summary</a>   |   <a tabindex="0" id="aPlainText">Plain Text</a> </div> <details id="divPubListDetails" class="details-text"> <summary><i>Altmetrics Details</i></summary> <span class="details-text-highlight">PMC Citations</span> indicate the number of times the publication was cited by articles in PubMed Central, and the <span class="details-text-highlight">Altmetric</span> score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) <span class="details-text-highlight">Fields</span> are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. <span class="details-text-highlight">Translation</span> tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications. </details> <div id="divPubList"> <div id="publicationListAll" class="publications"> <ol> <li id="ctl01_rpPublication_ctl01_liPublication" data-pmid="39929823" data-citations="-1" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl01_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl01_lblPublication">Breakage fusion bridge cycles drive high oncogene number with moderate intratumoural heterogeneity. Nat Commun. 2025 Feb 10; 16(1):1497.</span> <span id="ctl01_rpPublication_ctl01_lblPublicationIDs">Raeisi Dehkordi S, Wong IT, Ni J, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, <a href="https://profiles.ucsd.edu/kaiyuan.zhu">Zhu K</a>, Prasad G, Krockenberger L, Xu G, Chowdhury B, Rajkumar U, Caplin A, Muliaditan D, Gnanasekar A, Coruh C, Jin Q, Turner K, Teo SX, Pang AWC, <a href="https://profiles.ucsd.edu/ludmil.alexandrov">Alexandrov LB</a>, Chua CEL, <a href="https://profiles.ucsd.edu/frank.furnari">Furnari FB</a>, Maciejowski J, Paulson TG, <a href="https://profiles.ucsd.edu/julie.law">Law JA</a>, Chang HY, Yue F, DasGupta R, Zhao J, Mischel PS, <b>Bafna V</b>. PMID: 39929823; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC11811125' target='_blank'>PMC11811125</a>.</span> </div> <div id="ctl01_rpPublication_ctl01_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/39929823 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric39929823'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='39929823'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl02_liPublication" data-pmid="39109936" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30A0BF="1"> <div> <span id="ctl01_rpPublication_ctl02_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl02_lblPublication">Disparate Pathways for Extrachromosomal DNA Biogenesis and Genomic DNA Repair. Cancer Discov. 2025 Jan 13; 15(1):69-82.</span> <span id="ctl01_rpPublication_ctl02_lblPublicationIDs">Rose JC, Belk JA, Wong IT, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Horn HT, Daniel B, Jones MG, Yost KE, Hung KL, Kolahi KS, Curtis EJ, Kuo CJ, <b>Bafna V</b>, Mischel PS, Chang HY. PMID: 39109936; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC11726015' target='_blank'>PMC11726015</a>.</span> </div> <div id="ctl01_rpPublication_ctl02_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/39109936 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric39109936'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='39109936'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30A0BF;' data-color="#30A0BF" OnClick="toggleFilter('data-Field30A0BF')">Neo<span class='tooltiptext' style='background-color:#30A0BF;'> Neoplasms</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl03_liPublication" data-pmid="39695225" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl03_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl03_lblPublication">Engineered extrachromosomal oncogene amplifications promote tumorigenesis. Nature. 2025 Jan; 637(8047):955-964.</span> <span id="ctl01_rpPublication_ctl03_lblPublicationIDs">Pradella D, Zhang M, Gao R, Yao MA, Gluchowska KM, Cendon-Florez Y, Mishra T, La Rocca G, Weigl M, Jiao Z, Nguyen HHM, Lisi M, Ozimek MM, Mastroleo C, Chen K, Grimm F, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Zhang S, Zolli AA, Sun EG, Dameracharla B, Zhao Z, Pritykin Y, Sigel C, Chang HY, Mischel PS, <b>Bafna V</b>, Antonescu CR, Ventura A. PMID: 39695225; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC11754114' target='_blank'>PMC11754114</a>.</span> </div> <div id="ctl01_rpPublication_ctl03_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/39695225 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric39695225'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='39695225'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl04_liPublication" data-pmid="39506150" data-citations="1" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl04_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl04_lblPublication">Origins and impact of extrachromosomal DNA. Nature. 2024 Nov; 635(8037):193-200.</span> <span id="ctl01_rpPublication_ctl04_lblPublicationIDs">Bailey C, Pich O, Thol K, Watkins TBK, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Rowan A, Stavrou G, Weiser NE, Dameracharla B, Bentham R, Lu WT, Kittel J, Yang SYC, Howitt BE, Sharma N, Litovchenko M, Salgado R, Hung KL, Cornish AJ, Moore DA, Houlston RS, <b>Bafna V</b>, Chang HY, Nik-Zainal S, Kanu N, McGranahan N, Genomics England Consortium, Flanagan AM, Mischel PS, Jamal-Hanjani M, Swanton C. PMID: 39506150; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC11540846' target='_blank'>PMC11540846</a>.</span> </div> <div id="ctl01_rpPublication_ctl04_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/39506150 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/39506150/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">1</span></a><span id='spnHideOnNoAltmetric39506150'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='39506150'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl05_liPublication" data-pmid="39506152" data-citations="1" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl05_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl05_lblPublication">Coordinated inheritance of extrachromosomal DNAs in cancer cells. Nature. 2024 Nov; 635(8037):201-209.</span> <span id="ctl01_rpPublication_ctl05_lblPublicationIDs">Hung KL, Jones MG, Wong IT, Curtis EJ, Lange JT, He BJ, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Schmargon R, Scanu E, Brückner L, Yan X, Li R, Gnanasekar A, Chamorro González R, Belk JA, Liu Z, Melillo B, <b>Bafna V</b>, Dörr JR, Werner B, Huang W, Cravatt BF, Henssen AG, Mischel PS, Chang HY. PMID: 39506152; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC11541006' target='_blank'>PMC11541006</a>.</span> </div> <div id="ctl01_rpPublication_ctl05_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/39506152 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/39506152/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">1</span></a><span id='spnHideOnNoAltmetric39506152'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='39506152'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl06_liPublication" data-pmid="39506153" data-citations="2" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl06_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl06_lblPublication">Enhancing transcription-replication conflict targets ecDNA-positive cancers. Nature. 2024 Nov; 635(8037):210-218.</span> <span id="ctl01_rpPublication_ctl06_lblPublicationIDs">Tang J, Weiser NE, Wang G, Chowdhry S, Curtis EJ, Zhao Y, Wong IT, Marinov GK, Li R, Hanoian P, Tse E, Mojica SG, Hansen R, Plum J, Steffy A, Milutinovic S, Meyer ST, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Wang Y, Zhang S, Altemose N, Curtis C, Greenleaf WJ, <b>Bafna V</b>, Benkovic SJ, Pinkerton AB, Kasibhatla S, Hassig CA, Mischel PS, Chang HY. PMID: 39506153; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC11540844' target='_blank'>PMC11540844</a>.</span> </div> <div id="ctl01_rpPublication_ctl06_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/39506153 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/39506153/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">2</span></a><span id='spnHideOnNoAltmetric39506153'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='39506153'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl07_liPublication" data-pmid="39484416" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl07_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl07_lblPublication">Extrachromosomal DNA driven oncogene spatial heterogeneity and evolution in glioblastoma. bioRxiv. 2024 Oct 25.</span> <span id="ctl01_rpPublication_ctl07_lblPublicationIDs">Noorani I, Haughey M, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Rowan A, Grönroos E, Terenzi F, Wong IT, Kittel J, Bailey C, Weeden C, Bell D, Joo E, Barbe V, Jones MG, Nye E, Green M, Meader L, Norton EJ, Fabian M, Kanu N, Jamal-Hanjani M, Santarius T, Nicoll J, Boche D, Chang HY, <b>Bafna V</b>, Huang W, Mischel PS, Swanton C, Werner B. PMID: 39484416; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC11526901' target='_blank'>PMC11526901</a>.</span> </div> <div id="ctl01_rpPublication_ctl07_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/39484416 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric39484416'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='39484416'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl08_liPublication" data-pmid="39402156" data-citations="2" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF4E="1"> <div> <span id="ctl01_rpPublication_ctl08_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl08_lblPublication">Mapping extrachromosomal DNA amplifications during cancer progression. Nat Genet. 2024 Nov; 56(11):2447-2454.</span> <span id="ctl01_rpPublication_ctl08_lblPublicationIDs">Kim H, Kim S, Wade T, Yeo E, Lipsa A, Golebiewska A, Johnson KC, An S, Ko J, Nam Y, Lee HY, Kang S, Chung H, Niclou SP, Moon HE, Paek SH, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Verhaak RGW. PMID: 39402156; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC11549044' target='_blank'>PMC11549044</a>.</span> </div> <div id="ctl01_rpPublication_ctl08_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/39402156 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/39402156/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">2</span></a><span id='spnHideOnNoAltmetric39402156'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='39402156'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl09_liPublication" data-pmid="38981681" data-citations="2" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl09_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl09_lblPublication">CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing. Genome Res. 2024 Oct 11; 34(9):1344-1354.</span> <span id="ctl01_rpPublication_ctl09_lblPublicationIDs"><a href="https://profiles.ucsd.edu/kaiyuan.zhu">Zhu K</a>, Jones MG, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Bu X, Yi H, Hung KL, Wong IT, Zhang S, Mischel PS, Chang HY, <b>Bafna V</b>. PMID: 38981681; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC11529860' target='_blank'>PMC11529860</a>.</span> </div> <div id="ctl01_rpPublication_ctl09_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/38981681 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/38981681/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">2</span></a><span id='spnHideOnNoAltmetric38981681'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='38981681'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl10_liPublication" data-pmid="39282372" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl10_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl10_lblPublication">Enhancer activation from transposable elements in extrachromosomal DNA. bioRxiv. 2024 Sep 08.</span> <span id="ctl01_rpPublication_ctl10_lblPublicationIDs">Kraft K, Murphy SE, Jones MG, Shi Q, Bhargava-Shah A, Luong C, Hung KL, He BJ, Li R, Park SK, Weiser NE, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, <b>Bafna V</b>, Boeke JD, Mischel PS, Boettiger AN, Chang HY. PMID: 39282372; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC11398463' target='_blank'>PMC11398463</a>.</span> </div> <div id="ctl01_rpPublication_ctl10_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/39282372 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric39282372'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='39282372'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl11_liPublication" data-pmid="39281879" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl11_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl11_lblPublication">Inhibition of novel human-HPV hybrid ecDNA enhancers reduces oncogene expression and tumor growth in oropharyngeal cancer. Res Sq. 2024 Sep 05.</span> <span id="ctl01_rpPublication_ctl11_lblPublicationIDs">Nakagawa T, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, <a href="https://profiles.ucsd.edu/kaiyuan.zhu">Zhu K</a>, Lange JT, <a href="https://profiles.ucsd.edu/roman.sasik">Sasik R</a>, Phillips C, Sadat S, Javadzadeh S, Yang Q, Wang A, <a href="https://profiles.ucsd.edu/kersi.pestonjamasp">Pestonjamasp K</a>, Rosenthal B, <a href="https://profiles.ucsd.edu/kathleen.fisch">Fisch KM</a>, Mischel P, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/joseph.califano">Califano JA</a>. PMID: 39281879; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC11398563' target='_blank'>PMC11398563</a>.</span> </div> <div id="ctl01_rpPublication_ctl11_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/39281879 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric39281879'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='39281879'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl12_liPublication" data-pmid="38896472" data-citations="3" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF8230="1"> <div> <span id="ctl01_rpPublication_ctl12_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl12_lblPublication">Transcriptional immune suppression and up-regulation of double-stranded DNA damage and repair repertoires in ecDNA-containing tumors. Elife. 2024 Jun 19; 12.</span> <span id="ctl01_rpPublication_ctl12_lblPublicationIDs">Lin MS, Jo SY, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Chang HY, Wu S, Mischel PS, <b>Bafna V</b>. PMID: 38896472; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC11186631' target='_blank'>PMC11186631</a>.</span> </div> <div id="ctl01_rpPublication_ctl12_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/38896472 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/38896472/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">3</span></a><span id='spnHideOnNoAltmetric38896472'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='38896472'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF8230;' data-color="#BF8230" OnClick="toggleFilter('data-FieldBF8230')">Bio<span class='tooltiptext' style='background-color:#BF8230;'> Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl13_liPublication" data-pmid="38405779" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl13_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl13_lblPublication">CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing. bioRxiv. 2024 May 18.</span> <span id="ctl01_rpPublication_ctl13_lblPublicationIDs">Zhu K, Jones MG, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Bu X, Yi H, Hung KL, Wong IT, Zhang S, Mischel PS, Chang HY, <b>Bafna V</b>. PMID: 38405779; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10888815' target='_blank'>PMC10888815</a>.</span> </div> <div id="ctl01_rpPublication_ctl13_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/38405779 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric38405779'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='38405779'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl14_liPublication" data-pmid="38555024" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30A0BF="1"> <div> <span id="ctl01_rpPublication_ctl14_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl14_lblPublication">Oncogenic extrachromosomal DNA identification using whole-genome sequencing from formalin-fixed glioblastomas. Ann Oncol. 2024 Jun; 35(6):570-573.</span> <span id="ctl01_rpPublication_ctl14_lblPublicationIDs">Noorani I, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Rowan A, Grönroos E, Barbe V, Fabian M, Nicoll JAR, Boche D, <b>Bafna V</b>, Mischel PS, Swanton C. PMID: 38555024.</span> </div> <div id="ctl01_rpPublication_ctl14_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/38555024 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric38555024'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='38555024'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30A0BF;' data-color="#30A0BF" OnClick="toggleFilter('data-Field30A0BF')">Neo<span class='tooltiptext' style='background-color:#30A0BF;'> Neoplasms</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl15_liPublication" data-pmid="38683324" data-citations="0" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30AEBF="1"> <div> <span id="ctl01_rpPublication_ctl15_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl15_lblPublication">Analyses of Nuclear Reads Obtained Using Genome Skimming. Methods Mol Biol. 2024; 2744:247-265.</span> <span id="ctl01_rpPublication_ctl15_lblPublicationIDs">Mirarab S, <b>Bafna V</b>. PMID: 38683324.</span> </div> <div id="ctl01_rpPublication_ctl15_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/38683324 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric38683324'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='38683324'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl16_liPublication" data-pmid="38168210" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl16_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl16_lblPublication">Breakage fusion bridge cycles drive high oncogene copy number, but not intratumoral genetic heterogeneity or rapid cancer genome change. bioRxiv. 2023 Dec 13.</span> <span id="ctl01_rpPublication_ctl16_lblPublicationIDs">Dehkordi SR, Wong IT, Ni J, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, <a href="https://profiles.ucsd.edu/kaiyuan.zhu">Zhu K</a>, Prasad G, Krockenberger L, Xu G, Chowdhury B, Rajkumar U, Caplin A, Muliaditan D, Coruh C, Jin Q, Turner K, Teo SX, Pang AWC, <a href="https://profiles.ucsd.edu/ludmil.alexandrov">Alexandrov LB</a>, Chua CEL, <a href="https://profiles.ucsd.edu/frank.furnari">Furnari FB</a>, Paulson TG, <a href="https://profiles.ucsd.edu/julie.law">Law JA</a>, Chang HY, Yue F, DasGupta R, Zhao J, Mischel PS, <b>Bafna V</b>. PMID: 38168210; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10760206' target='_blank'>PMC10760206</a>.</span> </div> <div id="ctl01_rpPublication_ctl16_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/38168210 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric38168210'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='38168210'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl17_liPublication" data-pmid="37162993" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl17_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl17_lblPublication">Transcriptional immune suppression and upregulation of double stranded DNA damage and repair repertoires in ecDNA-containing tumors. bioRxiv. 2023 Nov 28.</span> <span id="ctl01_rpPublication_ctl17_lblPublicationIDs">Lin MS, Jo SY, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Chang HY, Wu S, Mischel PS, <b>Bafna V</b>. PMID: 37162993; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10168239' target='_blank'>PMC10168239</a>.</span> </div> <div id="ctl01_rpPublication_ctl17_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/37162993 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric37162993'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='37162993'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl18_liPublication" data-pmid="37945900" data-citations="4" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF4E="1"> <div> <span id="ctl01_rpPublication_ctl18_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl18_lblPublication">Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma. Nat Genet. 2023 Dec; 55(12):2189-2199.</span> <span id="ctl01_rpPublication_ctl18_lblPublicationIDs">Chapman OS, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, <a href="https://profiles.ucsd.edu/sunita.sridhar">Sridhar S</a>, Wong IT, Dixit D, Wang S, Prasad G, Rajkumar U, Pagadala MS, Larson JD, He BJ, Hung KL, Lange JT, Dehkordi SR, Chandran S, Adam M, Morgan L, Wani S, Tiwari A, Guccione C, Lin Y, Dutta A, Lo YY, Juarez E, Robinson JT, Korshunov A, Michaels JA, Cho YJ, <a href="https://profiles.ucsd.edu/denise.malicki">Malicki DM</a>, <a href="https://profiles.ucsd.edu/nicole.coufal">Coufal NG</a>, <a href="https://profiles.ucsd.edu/michael.levy">Levy ML</a>, Hobbs C, Scheuermann RH, Crawford JR, Pomeroy SL, Rich JN, Zhang X, Chang HY, Dixon JR, Bagchi A, Deshpande AJ, Carter H, Fraenkel E, Mischel PS, <a href="https://profiles.ucsd.edu/robert.wechsler-reya">Wechsler-Reya RJ</a>, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/jill.mesirov">Mesirov JP</a>, Chavez L. PMID: 37945900; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10703696' target='_blank'>PMC10703696</a>.</span> </div> <div id="ctl01_rpPublication_ctl18_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/37945900 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/37945900/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">4</span></a><span id='spnHideOnNoAltmetric37945900'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='37945900'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl19_liPublication" data-FieldBF307C="1" data-Field49BF30="1" data-citations="2" data-pmid="37980879" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="0"> <div> <span id="ctl01_rpPublication_ctl19_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl19_lblPublication">Multi-tissue proteogenomic analysis for mechanistic toxicology studies in non-model species. Environ Int. 2023 Dec; 182:108309.</span> <span id="ctl01_rpPublication_ctl19_lblPublicationIDs">Lin MS, Varunjikar MS, Lie KK, Søfteland L, Dellafiora L, Ørnsrud R, Sanden M, Berntssen MHG, Dorne JLCM, <b>Bafna V</b>, Rasinger JD. PMID: 37980879.</span> </div> <div id="ctl01_rpPublication_ctl19_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/37980879 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/37980879/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">2</span></a><span id='spnHideOnNoAltmetric37980879'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='37980879'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #49BF30;' data-color="#49BF30" OnClick="toggleFilter('data-Field49BF30')">Env<span class='tooltiptext' style='background-color:#49BF30;'> Environmental Health</span></a><a class='publication-filter' style='border:1px solid #BF307C;' data-color="#BF307C" OnClick="toggleFilter('data-FieldBF307C')">Tox<span class='tooltiptext' style='background-color:#BF307C;'> Toxicology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl20_liPublication" data-FieldBF8230="1" data-FieldBE30BF="1" data-citations="17" data-pmid="37872149" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0"> <div> <span id="ctl01_rpPublication_ctl20_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl20_lblPublication">A deep population reference panel of tandem repeat variation. Nat Commun. 2023 10 23; 14(1):6711.</span> <span id="ctl01_rpPublication_ctl20_lblPublicationIDs">Ziaei Jam H, Li Y, DeVito R, Mousavi N, <a href="https://profiles.ucsd.edu/yize.ma">Ma N</a>, Lujumba I, Adam Y, Maksimov M, Huang B, Dolzhenko E, Qiu Y, Kakembo FE, Joseph H, Onyido B, Adeyemi J, Bakhtiari M, Park J, Javadzadeh S, Jjingo D, Adebiyi E, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/melissa.gymrek">Gymrek M</a>. PMID: 37872149; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10593948' target='_blank'>PMC10593948</a>.</span> </div> <div id="ctl01_rpPublication_ctl20_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/37872149 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/37872149/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">17</span></a><span id='spnHideOnNoAltmetric37872149'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='37872149'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF8230;' data-color="#BF8230" OnClick="toggleFilter('data-FieldBF8230')">Bio<span class='tooltiptext' style='background-color:#BF8230;'> Biology</span></a><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl21_liPublication" data-pmid="37503111" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl21_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl21_lblPublication">Coordinated inheritance of extrachromosomal DNA species in human cancer cells. bioRxiv. 2023 Jul 19.</span> <span id="ctl01_rpPublication_ctl21_lblPublicationIDs">Hung KL, Jones MG, Wong IT, Lange JT, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Scanu E, He BJ, Brückner L, Li R, González RC, Schmargon R, Dörr JR, Belk JA, <b>Bafna V</b>, Werner B, Huang W, Henssen AG, Mischel PS, Chang HY. PMID: 37503111; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10371175' target='_blank'>PMC10371175</a>.</span> </div> <div id="ctl01_rpPublication_ctl21_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/37503111 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric37503111'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='37503111'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl22_liPublication" data-pmid="37425909" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl22_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl22_lblPublication">Immortalization and transformation of primary cells mediated by engineered ecDNAs. bioRxiv. 2023 Jun 26.</span> <span id="ctl01_rpPublication_ctl22_lblPublicationIDs">Pradella D, Zhang M, Gao R, Yao MA, Gluchowska KM, Florez YC, Mishra T, Rocca G, Weigl M, Jiao Z, Nguyen HHM, Grimm F, Lisi M, Mastroleo C, Chen K, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, <b>Bafna V</b>, Antonescu CR, Ventura A. PMID: 37425909; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10327150' target='_blank'>PMC10327150</a>.</span> </div> <div id="ctl01_rpPublication_ctl22_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/37425909 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric37425909'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='37425909'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl23_liPublication" data-pmid="37286593" data-citations="36" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl23_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl23_lblPublication">Epigenetic dysregulation from chromosomal transit in micronuclei. Nature. 2023 Jul; 619(7968):176-183.</span> <span id="ctl01_rpPublication_ctl23_lblPublicationIDs">Agustinus AS, Al-Rawi D, Dameracharla B, Raviram R, Jones BSCL, Stransky S, Scipioni L, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Di Bona M, Norkunaite D, Myers RM, Duran M, Choi S, Weigelt B, Yomtoubian S, McPherson A, Toufektchan E, Keuper K, Mischel PS, Mittal V, Shah SP, Maciejowski J, Storchova Z, <a href="https://profiles.icts.uci.edu/enrico.gratton">Gratton E</a>, Ly P, Landau D, Bakhoum MF, Koche RP, Sidoli S, <b>Bafna V</b>, David Y, Bakhoum SF. PMID: 37286593; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10322720' target='_blank'>PMC10322720</a>.</span> </div> <div id="ctl01_rpPublication_ctl23_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/37286593 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/37286593/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">36</span></a><span id='spnHideOnNoAltmetric37286593'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='37286593'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl24_liPublication" data-pmid="37155843" data-citations="6" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl24_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl24_lblPublication">Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity. Proc Natl Acad Sci U S A. 2023 05 16; 120(20):e2210991120.</span> <span id="ctl01_rpPublication_ctl24_lblPublicationIDs">Raviram R, Raman A, Preissl S, Ning J, Wu S, Koga T, Zhang K, Brennan CW, Zhu C, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Van Deynze K, Han JY, Hou X, Ye Z, Mischel AK, Li YE, Fang R, Baback T, Mugford J, Han CZ, Glass CK, Barr CL, Mischel PS, <b>Bafna V</b>, Escoubet L, <a href="https://profiles.ucsd.edu/bing.ren">Ren B</a>, Chen CC. PMID: 37155843; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10194019' target='_blank'>PMC10194019</a>.</span> </div> <div id="ctl01_rpPublication_ctl24_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/37155843 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/37155843/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">6</span></a><span id='spnHideOnNoAltmetric37155843'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='37155843'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl25_liPublication" data-pmid="37168281" data-citations="3" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl25_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl25_lblPublication">TRviz: a Python library for decomposing and visualizing tandem repeat sequences. Bioinform Adv. 2023; 3(1):vbad058.</span> <span id="ctl01_rpPublication_ctl25_lblPublicationIDs">Park J, Kaufman E, Valdmanis PN, <b>Bafna V</b>. PMID: 37168281; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10166586' target='_blank'>PMC10166586</a>.</span> </div> <div id="ctl01_rpPublication_ctl25_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/37168281 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/37168281/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">3</span></a><span id='spnHideOnNoAltmetric37168281'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='37168281'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl26_liPublication" data-pmid="37046089" data-citations="34" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl26_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl26_lblPublication">Extrachromosomal DNA in the cancerous transformation of Barrett's oesophagus. Nature. 2023 04; 616(7958):798-805.</span> <span id="ctl01_rpPublication_ctl26_lblPublicationIDs"><a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Ng AWT, Galipeau PC, Li X, Sanchez CA, Katz-Summercorn AC, Kim H, Jammula S, He Y, <a href="https://profiles.ucsd.edu/scott.lippman">Lippman SM</a>, Verhaak RGW, Maley CC, <a href="https://profiles.ucsd.edu/ludmil.alexandrov">Alexandrov LB</a>, Reid BJ, Fitzgerald RC, Paulson TG, Chang HY, Wu S, <b>Bafna V</b>, Mischel PS. PMID: 37046089; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10132967' target='_blank'>PMC10132967</a>.</span> </div> <div id="ctl01_rpPublication_ctl26_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/37046089 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/37046089/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">34</span></a><span id='spnHideOnNoAltmetric37046089'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='37046089'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl27_liPublication" data-pmid="36945429" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl27_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl27_lblPublication">A deep population reference panel of tandem repeat variation. bioRxiv. 2023 Mar 12.</span> <span id="ctl01_rpPublication_ctl27_lblPublicationIDs">Jam HZ, Li Y, DeVito R, Mousavi N, <a href="https://profiles.ucsd.edu/yize.ma">Ma N</a>, Lujumba I, Adam Y, Maksimov M, Huang B, Dolzhenko E, Qiu Y, Kakembo FE, Joseph H, Onyido B, Adeyemi J, Bakhtiari M, Park J, Javadzadeh S, Jjingo D, Adebiyi E, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/melissa.gymrek">Gymrek M</a>. PMID: 36945429; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10028971' target='_blank'>PMC10028971</a>.</span> </div> <div id="ctl01_rpPublication_ctl27_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/36945429 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric36945429'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='36945429'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl28_liPublication" data-pmid="36434258" data-citations="1" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF4E="1"> <div> <span id="ctl01_rpPublication_ctl28_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl28_lblPublication">Variable number tandem repeats (VNTRs) as modifiers of breast cancer risk in carriers of BRCA1 185delAG. Eur J Hum Genet. 2023 02; 31(2):216-222.</span> <span id="ctl01_rpPublication_ctl28_lblPublicationIDs">Ding YC, Adamson AW, Bakhtiari M, Patrick C, Park J, Laitman Y, Weitzel JN, <b>Bafna V</b>, Friedman E, Neuhausen SL. PMID: 36434258; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC9905572' target='_blank'>PMC9905572</a>.</span> </div> <div id="ctl01_rpPublication_ctl28_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/36434258 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/36434258/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">1</span></a><span id='spnHideOnNoAltmetric36434258'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='36434258'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl29_liPublication" data-citations="3" data-Field30AEBF="1" data-pmid="36265468" data-FieldBFB330="1" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl29_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl29_lblPublication">Quantifying the uncertainty of assembly-free genome-wide distance estimates and phylogenetic relationships using subsampling. Cell Syst. 2022 10 19; 13(10):817-829.e3.</span> <span id="ctl01_rpPublication_ctl29_lblPublicationIDs"><a href="https://profiles.ucsd.edu/eleonora.rachtman">Rachtman E</a>, Sarmashghi S, <b>Bafna V</b>, Mirarab S. PMID: 36265468; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC9589918' target='_blank'>PMC9589918</a>.</span> </div> <div id="ctl01_rpPublication_ctl29_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/36265468 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/36265468/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">3</span></a><span id='spnHideOnNoAltmetric36265468'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='36265468'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BFB330;' data-color="#BFB330" OnClick="toggleFilter('data-FieldBFB330')">Cel<span class='tooltiptext' style='background-color:#BFB330;'> Cell Biology</span></a><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl30_liPublication" data-pmid="36253572" data-citations="37" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF4E="1"> <div> <span id="ctl01_rpPublication_ctl30_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl30_lblPublication">Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH. Nat Genet. 2022 11; 54(11):1746-1754.</span> <span id="ctl01_rpPublication_ctl30_lblPublicationIDs">Hung KL, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Dehkordi SR, Colón CI, Li R, Wong IT, Coruh C, Dharanipragada P, Lomeli SH, Weiser NE, <a href="https://profiles.ucla.edu/gatien.moriceau">Moriceau G</a>, Zhang X, Bailey C, Houlahan KE, Yang W, González RC, Swanton C, Curtis C, Jamal-Hanjani M, Henssen AG, <a href="https://profiles.ucsd.edu/julie.law">Law JA</a>, Greenleaf WJ, <a href="https://profiles.ucla.edu/roger.lo">Lo RS</a>, Mischel PS, <b>Bafna V</b>, Chang HY. PMID: 36253572; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC9649439' target='_blank'>PMC9649439</a>.</span> </div> <div id="ctl01_rpPublication_ctl30_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/36253572 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/36253572/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">37</span></a><span id='spnHideOnNoAltmetric36253572'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='36253572'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl31_liPublication" data-pmid="36123406" data-citations="34" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF4E="1"> <div> <span id="ctl01_rpPublication_ctl31_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl31_lblPublication">The evolutionary dynamics of extrachromosomal DNA in human cancers. Nat Genet. 2022 10; 54(10):1527-1533.</span> <span id="ctl01_rpPublication_ctl31_lblPublicationIDs">Lange JT, Rose JC, Chen CY, Pichugin Y, Xie L, Tang J, Hung KL, Yost KE, Shi Q, <a href="https://profiles.ucsd.edu/marcella.erb">Erb ML</a>, Rajkumar U, Wu S, Taschner-Mandl S, Bernkopf M, Swanton C, Liu Z, Huang W, Chang HY, <b>Bafna V</b>, Henssen AG, Werner B, Mischel PS. PMID: 36123406; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC9534767' target='_blank'>PMC9534767</a>.</span> </div> <div id="ctl01_rpPublication_ctl31_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/36123406 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/36123406/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">34</span></a><span id='spnHideOnNoAltmetric36123406'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='36123406'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl32_liPublication" data-pmid="36100708" data-citations="3" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF4E="1"> <div> <span id="ctl01_rpPublication_ctl32_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl32_lblPublication">Prevalence of hereditary tubulointerstitial kidney diseases in the German Chronic Kidney Disease study. Eur J Hum Genet. 2022 12; 30(12):1413-1422.</span> <span id="ctl01_rpPublication_ctl32_lblPublicationIDs">Popp B, Ekici AB, Knaup KX, Schneider K, Uebe S, Park J, <b>Bafna V</b>, Meiselbach H, Eckardt KU, Schiffer M, Reis A, Kraus C, Wiesener M. PMID: 36100708; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC9712573' target='_blank'>PMC9712573</a>.</span> </div> <div id="ctl01_rpPublication_ctl32_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/36100708 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/36100708/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">3</span></a><span id='spnHideOnNoAltmetric36100708'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='36100708'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl33_liPublication" data-pmid="35999307" data-citations="0" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30A0BF="1"> <div> <span id="ctl01_rpPublication_ctl33_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl33_lblPublication">Form follows function in cancer genomes. Nat Cancer. 2022 08; 3(8):905-906.</span> <span id="ctl01_rpPublication_ctl33_lblPublicationIDs">Mischel PS, <b>Bafna V</b>. PMID: 35999307.</span> </div> <div id="ctl01_rpPublication_ctl33_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/35999307 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric35999307'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='35999307'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30A0BF;' data-color="#30A0BF" OnClick="toggleFilter('data-Field30A0BF')">Neo<span class='tooltiptext' style='background-color:#30A0BF;'> Neoplasms</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl34_liPublication" data-pmid="35982790" data-citations="4" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl34_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl34_lblPublication">Detecting tandem repeat variants in coding regions using code-adVNTR. iScience. 2022 Aug 19; 25(8):104785.</span> <span id="ctl01_rpPublication_ctl34_lblPublicationIDs">Park J, Bakhtiari M, Popp B, Wiesener M, <b>Bafna V</b>. PMID: 35982790; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC9379575' target='_blank'>PMC9379575</a>.</span> </div> <div id="ctl01_rpPublication_ctl34_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/35982790 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/35982790/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">4</span></a><span id='spnHideOnNoAltmetric35982790'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='35982790'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl35_liPublication" data-FieldBF7C30="1" data-citations="8" data-Field30AEBF="1" data-pmid="35672450" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl35_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl35_lblPublication">ARID1B, a molecular suppressor of erythropoiesis, is essential for the prevention of Monge's disease. Exp Mol Med. 2022 06; 54(6):777-787.</span> <span id="ctl01_rpPublication_ctl35_lblPublicationIDs"><a href="https://profiles.ucsd.edu/priti.azad">Azad P</a>, <a href="https://profiles.ucsd.edu/andrew.caldwell">Caldwell AB</a>, <a href="https://profiles.ucsd.edu/srinivasan.ramachandrareddy">Ramachandran S</a>, Spann NJ, Akbari A, Villafuerte FC, Bermudez D, Zhao H, <a href="https://profiles.ucsd.edu/orit.poulsen">Poulsen O</a>, <a href="https://profiles.ucsd.edu/dan.zhou">Zhou D</a>, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/shankar.subramaniam">Subramaniam S</a>, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>. PMID: 35672450; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC9256584' target='_blank'>PMC9256584</a>.</span> </div> <div id="ctl01_rpPublication_ctl35_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/35672450 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/35672450/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">8</span></a><span id='spnHideOnNoAltmetric35672450'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='35672450'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl36_liPublication" data-Field30BF47="1" data-citations="17" data-Field30BF4E="1" data-pmid="35609926" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl36_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl36_lblPublication">Extrachromosomal DNA in Cancer. Annu Rev Genomics Hum Genet. 2022 08 31; 23:29-52.</span> <span id="ctl01_rpPublication_ctl36_lblPublicationIDs"><b>Bafna V</b>, Mischel PS. PMID: 35609926; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC10508221' target='_blank'>PMC10508221</a>.</span> </div> <div id="ctl01_rpPublication_ctl36_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/35609926 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/35609926/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">17</span></a><span id='spnHideOnNoAltmetric35609926'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='35609926'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl37_liPublication" data-pmid="35493723" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl37_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl37_lblPublication">FastViFi: Fast and accurate detection of (Hybrid) Viral DNA and RNA. NAR Genom Bioinform. 2022 Jun; 4(2):lqac032.</span> <span id="ctl01_rpPublication_ctl37_lblPublicationIDs">Javadzadeh S, Rajkumar U, Nguyen N, Sarmashghi S, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Shang J, <b>Bafna V</b>. PMID: 35493723; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC9041341' target='_blank'>PMC9041341</a>.</span> </div> <div id="ctl01_rpPublication_ctl37_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/35493723 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric35493723'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='35493723'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl38_liPublication" data-pmid="34930786" data-citations="33" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30A0BF="1"> <div> <span id="ctl01_rpPublication_ctl38_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl38_lblPublication">Plasticity of Extrachromosomal and Intrachromosomal BRAF Amplifications in Overcoming Targeted Therapy Dosage Challenges. Cancer Discov. 2022 04 01; 12(4):1046-1069.</span> <span id="ctl01_rpPublication_ctl38_lblPublicationIDs">Song K, Minami JK, Huang A, Dehkordi SR, Lomeli SH, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Goodman MH, <a href="https://profiles.ucla.edu/gatien.moriceau">Moriceau G</a>, Krijgsman O, Dharanipragada P, Ridgley T, Crosson WP, Salazar J, Pazol E, Karin G, Jayaraman R, Balanis NG, Alhani S, Sheu K, Ten Hoeve J, Palermo A, Motika SE, <a href="https://profiles.ucla.edu/tharanga.senaratne">Senaratne TN</a>, Paraiso KH, Hergenrother PJ, Rao PN, Multani AS, Peeper DS, <b>Bafna V</b>, <a href="https://profiles.ucla.edu/roger.lo">Lo RS</a>, <a href="https://profiles.ucla.edu/thomas.graeber">Graeber TG</a>. PMID: 34930786; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC9192483' target='_blank'>PMC9192483</a>.</span> </div> <div id="ctl01_rpPublication_ctl38_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/34930786 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/34930786/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">33</span></a><span id='spnHideOnNoAltmetric34930786'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='34930786'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30A0BF;' data-color="#30A0BF" OnClick="toggleFilter('data-Field30A0BF')">Neo<span class='tooltiptext' style='background-color:#30A0BF;'> Neoplasms</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl39_liPublication" data-citations="1" data-Field30AEBF="1" data-Field30BF4E="1" data-pmid="34718575" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl39_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl39_lblPublication">Heterozygous Tropomodulin 3 mice have improved lung vascularization after chronic hypoxia. Hum Mol Genet. 2022 03 31; 31(7):1130-1140.</span> <span id="ctl01_rpPublication_ctl39_lblPublicationIDs"><a href="https://profiles.ucsd.edu/tsering.stobdan">Stobdan T</a>, Jain PP, Xiong M, <b>Bafna V</b>, Yuan JX, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>. PMID: 34718575; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC8976430' target='_blank'>PMC8976430</a>.</span> </div> <div id="ctl01_rpPublication_ctl39_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/34718575 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/34718575/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">1</span></a><span id='spnHideOnNoAltmetric34718575'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='34718575'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl40_liPublication" data-pmid="35140399" data-citations="51" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl40_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl40_lblPublication">Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA. Nature. 2022 02; 602(7897):510-517.</span> <span id="ctl01_rpPublication_ctl40_lblPublicationIDs"><a href="https://profiles.ucsd.edu/erik.bergstrom">Bergstrom EN</a>, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Petljak M, Khandekar A, <a href="https://profiles.ucsd.edu/mark.barnes">Barnes M</a>, Zhang T, <a href="https://profiles.ucsd.edu/christopher.d.steele">Steele CD</a>, Pillay N, Landi MT, <b>Bafna V</b>, Mischel PS, Harris RS, <a href="https://profiles.ucsd.edu/ludmil.alexandrov">Alexandrov LB</a>. PMID: 35140399; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC8850194' target='_blank'>PMC8850194</a>.</span> </div> <div id="ctl01_rpPublication_ctl40_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/35140399 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/35140399/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">51</span></a><span id='spnHideOnNoAltmetric35140399'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='35140399'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl41_liPublication" data-pmid="35036860" data-citations="9" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl41_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl41_lblPublication">Optical genome mapping identifies rare structural variations as predisposition factors associated with severe COVID-19. iScience. 2022 Feb 18; 25(2):103760.</span> <span id="ctl01_rpPublication_ctl41_lblPublicationIDs">Sahajpal NS, Jill Lai CY, Hastie A, Mondal AK, Dehkordi SR, van der Made CI, Fedrigo O, Al-Ajli F, Jalnapurkar S, Byrska-Bishop M, Kanagal-Shamanna R, Levy B, Schieck M, Illig T, Bacanu SA, Chou JS, Randolph AG, Rojiani AM, Zody MC, Brownstein CA, Beggs AH, <b>Bafna V</b>, Jarvis ED, Hoischen A, Chaubey A, Kolhe R, COVID19hostgenomesv Consortium. PMID: 35036860; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC8744399' target='_blank'>PMC8744399</a>.</span> </div> <div id="ctl01_rpPublication_ctl41_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/35036860 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/35036860/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">9</span></a><span id='spnHideOnNoAltmetric35036860'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='35036860'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl42_liPublication" data-pmid="34819668" data-citations="94" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl42_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl42_lblPublication">ecDNA hubs drive cooperative intermolecular oncogene expression. Nature. 2021 12; 600(7890):731-736.</span> <span id="ctl01_rpPublication_ctl42_lblPublicationIDs">Hung KL, Yost KE, Xie L, Shi Q, Helmsauer K, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Schöpflin R, Lange JT, Chamorro González R, Weiser NE, Chen C, Valieva ME, Wong IT, Wu S, Dehkordi SR, Duffy CV, Kraft K, Tang J, Belk JA, Rose JC, Corces MR, Granja JM, Li R, Rajkumar U, Friedlein J, Bagchi A, Satpathy AT, Tjian R, Mundlos S, <b>Bafna V</b>, Henssen AG, Mischel PS, Liu Z, Chang HY. PMID: 34819668; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC9126690' target='_blank'>PMC9126690</a>.</span> </div> <div id="ctl01_rpPublication_ctl42_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/34819668 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/34819668/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">94</span></a><span id='spnHideOnNoAltmetric34819668'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='34819668'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl43_liPublication" data-pmid="34780468" data-citations="9" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl43_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl43_lblPublication">Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT. PLoS Comput Biol. 2021 11; 17(11):e1009449.</span> <span id="ctl01_rpPublication_ctl43_lblPublicationIDs">Sarmashghi S, Balaban M, <a href="https://profiles.ucsd.edu/eleonora.rachtman">Rachtman E</a>, <a href="https://profiles.ucsd.edu/behrouz.touri">Touri B</a>, Mirarab S, <b>Bafna V</b>. PMID: 34780468; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC8629397' target='_blank'>PMC8629397</a>.</span> </div> <div id="ctl01_rpPublication_ctl43_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/34780468 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/34780468/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">9</span></a><span id='spnHideOnNoAltmetric34780468'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='34780468'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl44_liPublication" data-pmid="34752712" data-citations="37" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field3032BF="1"> <div> <span id="ctl01_rpPublication_ctl44_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl44_lblPublication">Extrachromosomal DNA: An Emerging Hallmark in Human Cancer. Annu Rev Pathol. 2022 01 24; 17:367-386.</span> <span id="ctl01_rpPublication_ctl44_lblPublicationIDs">Wu S, <b>Bafna V</b>, Chang HY, Mischel PS. PMID: 34752712; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC9125980' target='_blank'>PMC9125980</a>.</span> </div> <div id="ctl01_rpPublication_ctl44_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/34752712 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/34752712/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">37</span></a><span id='spnHideOnNoAltmetric34752712'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='34752712'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #3032BF;' data-color="#3032BF" OnClick="toggleFilter('data-Field3032BF')">Pat<span class='tooltiptext' style='background-color:#3032BF;'> Pathology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl45_liPublication" data-pmid="34548317" data-citations="21" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30A0BF="1"> <div> <span id="ctl01_rpPublication_ctl45_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl45_lblPublication">Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription. Clin Cancer Res. 2021 12 15; 27(24):6772-6786.</span> <span id="ctl01_rpPublication_ctl45_lblPublicationIDs">Pang J, Nguyen N, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Ball L, Finegersh A, Ren S, Nakagawa T, Flagg M, Sadat S, Mischel PS, Xu G, <a href="https://profiles.ucsd.edu/kathleen.fisch">Fisch K</a>, <a href="https://profiles.ucsd.edu/theresa.guo">Guo T</a>, Cahill G, Panuganti B, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/joseph.califano">Califano J</a>. PMID: 34548317; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC8710294' target='_blank'>PMC8710294</a>.</span> </div> <div id="ctl01_rpPublication_ctl45_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/34548317 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/34548317/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">21</span></a><span id='spnHideOnNoAltmetric34548317'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='34548317'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30A0BF;' data-color="#30A0BF" OnClick="toggleFilter('data-Field30A0BF')">Neo<span class='tooltiptext' style='background-color:#30A0BF;'> Neoplasms</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl46_liPublication" data-pmid="34377979" data-citations="10" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl46_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl46_lblPublication">CONSULT: accurate contamination removal using locality-sensitive hashing. NAR Genom Bioinform. 2021 Sep; 3(3):lqab071.</span> <span id="ctl01_rpPublication_ctl46_lblPublicationIDs"><a href="https://profiles.ucsd.edu/eleonora.rachtman">Rachtman E</a>, <b>Bafna V</b>, Mirarab S. PMID: 34377979; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC8340999' target='_blank'>PMC8340999</a>.</span> </div> <div id="ctl01_rpPublication_ctl46_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/34377979 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/34377979/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">10</span></a><span id='spnHideOnNoAltmetric34377979'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='34377979'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl47_liPublication" data-pmid="34027500" data-citations="9" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl47_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl47_lblPublication">FaNDOM: Fast nested distance-based seeding of optical maps. Patterns (N Y). 2021 May 14; 2(5):100248.</span> <span id="ctl01_rpPublication_ctl47_lblPublicationIDs">Raeisi Dehkordi S, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, <b>Bafna V</b>. PMID: 34027500; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC8134938' target='_blank'>PMC8134938</a>.</span> </div> <div id="ctl01_rpPublication_ctl47_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/34027500 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/34027500/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">9</span></a><span id='spnHideOnNoAltmetric34027500'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='34027500'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl48_liPublication" data-FieldBF8230="1" data-FieldBE30BF="1" data-citations="38" data-pmid="33824302" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl48_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl48_lblPublication">Variable number tandem repeats mediate the expression of proximal genes. Nat Commun. 2021 04 06; 12(1):2075.</span> <span id="ctl01_rpPublication_ctl48_lblPublicationIDs">Bakhtiari M, Park J, Ding YC, Shleizer-Burko S, Neuhausen SL, Halldórsson BV, Stefánsson K, <a href="https://profiles.ucsd.edu/melissa.gymrek">Gymrek M</a>, <b>Bafna V</b>. PMID: 33824302; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC8024321' target='_blank'>PMC8024321</a>.</span> </div> <div id="ctl01_rpPublication_ctl48_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/33824302 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/33824302/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">38</span></a><span id='spnHideOnNoAltmetric33824302'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='33824302'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF8230;' data-color="#BF8230" OnClick="toggleFilter('data-FieldBF8230')">Bio<span class='tooltiptext' style='background-color:#BF8230;'> Biology</span></a><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl49_liPublication" data-FieldBF8230="1" data-FieldBE30BF="1" data-citations="4" data-pmid="33579965" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="0"> <div> <span id="ctl01_rpPublication_ctl49_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl49_lblPublication">Multiple mechanisms drive genomic adaptation to extreme O2 levels in Drosophila melanogaster. Nat Commun. 2021 02 12; 12(1):997.</span> <span id="ctl01_rpPublication_ctl49_lblPublicationIDs">Iranmehr A, <a href="https://profiles.ucsd.edu/tsering.stobdan">Stobdan T</a>, <a href="https://profiles.ucsd.edu/dan.zhou">Zhou D</a>, Zhao H, <a href="https://profiles.ucsd.edu/sergey.kryazhimskiy">Kryazhimskiy S</a>, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>. PMID: 33579965; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC7881140' target='_blank'>PMC7881140</a>.</span> </div> <div id="ctl01_rpPublication_ctl49_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/33579965 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/33579965/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">4</span></a><span id='spnHideOnNoAltmetric33579965'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='33579965'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF8230;' data-color="#BF8230" OnClick="toggleFilter('data-FieldBF8230')">Bio<span class='tooltiptext' style='background-color:#BF8230;'> Biology</span></a><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl50_liPublication" data-pmid="33477016" data-citations="15" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl50_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl50_lblPublication">Extrachromosomal DNA (ecDNA) in cancer pathogenesis. Curr Opin Genet Dev. 2021 02; 66:78-82.</span> <span id="ctl01_rpPublication_ctl50_lblPublicationIDs">Wu S, <b>Bafna V</b>, Mischel PS. PMID: 33477016.</span> </div> <div id="ctl01_rpPublication_ctl50_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/33477016 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/33477016/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">15</span></a><span id='spnHideOnNoAltmetric33477016'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='33477016'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl51_liPublication" data-FieldBF8230="1" data-FieldBE30BF="1" data-citations="44" data-pmid="32873787" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl51_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl51_lblPublication">AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications. Nat Commun. 2020 09 01; 11(1):4374.</span> <span id="ctl01_rpPublication_ctl51_lblPublicationIDs"><a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Coruh C, Dehkordi SR, Lange JT, Turner KM, Deshpande V, Pai DA, Zhang C, Rajkumar U, <a href="https://profiles.ucsd.edu/julie.law">Law JA</a>, Mischel PS, <b>Bafna V</b>. PMID: 32873787; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC7463033' target='_blank'>PMC7463033</a>.</span> </div> <div id="ctl01_rpPublication_ctl51_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/32873787 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/32873787/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">44</span></a><span id='spnHideOnNoAltmetric32873787'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='32873787'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF8230;' data-color="#BF8230" OnClick="toggleFilter('data-FieldBF8230')">Bio<span class='tooltiptext' style='background-color:#BF8230;'> Biology</span></a><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl52_liPublication" data-pmid="32807987" data-citations="185" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF4E="1"> <div> <span id="ctl01_rpPublication_ctl52_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl52_lblPublication">Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers. Nat Genet. 2020 09; 52(9):891-897.</span> <span id="ctl01_rpPublication_ctl52_lblPublicationIDs">Kim H, Nguyen NP, Turner K, Wu S, Gujar AD, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Liu J, Deshpande V, Rajkumar U, Namburi S, Amin SB, Yi E, Menghi F, Schulte JH, Henssen AG, Chang HY, Beck CR, Mischel PS, <b>Bafna V</b>, Verhaak RGW. PMID: 32807987; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC7484012' target='_blank'>PMC7484012</a>.</span> </div> <div id="ctl01_rpPublication_ctl52_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/32807987 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/32807987/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">185</span></a><span id='spnHideOnNoAltmetric32807987'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='32807987'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl53_liPublication" data-Field49BF30="1" data-citations="22" data-Field30AEBF="1" data-pmid="32542933" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="0"> <div> <span id="ctl01_rpPublication_ctl53_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl53_lblPublication">Beyond DNA barcoding: The unrealized potential of genome skim data in sample identification. Mol Ecol. 2020 07; 29(14):2521-2534.</span> <span id="ctl01_rpPublication_ctl53_lblPublicationIDs">Bohmann K, Mirarab S, <b>Bafna V</b>, Gilbert MTP. PMID: 32542933; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC7496323' target='_blank'>PMC7496323</a>.</span> </div> <div id="ctl01_rpPublication_ctl53_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/32542933 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/32542933/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">22</span></a><span id='spnHideOnNoAltmetric32542933'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='32542933'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #49BF30;' data-color="#49BF30" OnClick="toggleFilter('data-Field49BF30')">Env<span class='tooltiptext' style='background-color:#49BF30;'> Environmental Health</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl54_liPublication" data-FieldBF8230="1" data-FieldBE30BF="1" data-citations="1" data-pmid="32312984" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0"> <div> <span id="ctl01_rpPublication_ctl54_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl54_lblPublication">Author Correction: Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells. Nat Commun. 2020 04 20; 11(1):1958.</span> <span id="ctl01_rpPublication_ctl54_lblPublicationIDs">Koga T, Chaim IA, Benitez JA, Markmiller S, Parisian AD, <a href="https://profiles.ucsd.edu/robert.hevner">Hevner RF</a>, Turner KM, Hessenauer FM, D'Antonio M, Nguyen ND, Saberi S, Ma J, Miki S, <a href="https://profiles.ucsd.edu/antonia.boyer">Boyer AD</a>, <a href="https://profiles.ucsd.edu/john.ravits">Ravits J</a>, <a href="https://profiles.ucsd.edu/kelly.frazer">Frazer KA</a>, <b>Bafna V</b>, Chen CC, Mischel PS, Yeo GW, <a href="https://profiles.ucsd.edu/frank.furnari">Furnari FB</a>. PMID: 32312984; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC7171109' target='_blank'>PMC7171109</a>.</span> </div> <div id="ctl01_rpPublication_ctl54_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/32312984 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/32312984/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">1</span></a><span id='spnHideOnNoAltmetric32312984'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='32312984'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF8230;' data-color="#BF8230" OnClick="toggleFilter('data-FieldBF8230')">Bio<span class='tooltiptext' style='background-color:#BF8230;'> Biology</span></a><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl55_liPublication" data-Field49BF30="1" data-citations="14" data-Field30AEBF="1" data-pmid="31943790" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0"> <div> <span id="ctl01_rpPublication_ctl55_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl55_lblPublication">The impact of contaminants on the accuracy of genome skimming and the effectiveness of exclusion read filters. Mol Ecol Resour. 2020 May; 20(3).</span> <span id="ctl01_rpPublication_ctl55_lblPublicationIDs"><a href="https://profiles.ucsd.edu/eleonora.rachtman">Rachtman E</a>, Balaban M, <b>Bafna V</b>, Mirarab S. PMID: 31943790.</span> </div> <div id="ctl01_rpPublication_ctl55_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/31943790 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/31943790/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">14</span></a><span id='spnHideOnNoAltmetric31943790'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='31943790'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #49BF30;' data-color="#49BF30" OnClick="toggleFilter('data-Field49BF30')">Env<span class='tooltiptext' style='background-color:#49BF30;'> Environmental Health</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl56_liPublication" data-FieldBF8230="1" data-FieldBE30BF="1" data-citations="31" data-pmid="31992716" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl56_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl56_lblPublication">Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells. Nat Commun. 2020 Jan 28; 11(1):550.</span> <span id="ctl01_rpPublication_ctl56_lblPublicationIDs">Koga T, Chaim IA, Benitez JA, Markmiller S, Parisian AD, <a href="https://profiles.ucsd.edu/robert.hevner">Hevner RF</a>, Turner KM, Hessenauer FM, D'Antonio M, Nguyen ND, Saberi S, Ma J, Miki S, <a href="https://profiles.ucsd.edu/antonia.boyer">Boyer AD</a>, <a href="https://profiles.ucsd.edu/john.ravits">Ravits J</a>, <a href="https://profiles.ucsd.edu/kelly.frazer">Frazer KA</a>, <b>Bafna V</b>, Chen CC, Mischel PS, Yeo GW, <a href="https://profiles.ucsd.edu/frank.furnari">Furnari FB</a>. PMID: 31992716; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC6987220' target='_blank'>PMC6987220</a>.</span> </div> <div id="ctl01_rpPublication_ctl56_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/31992716 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/31992716/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">31</span></a><span id='spnHideOnNoAltmetric31992716'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='31992716'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF8230;' data-color="#BF8230" OnClick="toggleFilter('data-FieldBF8230')">Bio<span class='tooltiptext' style='background-color:#BF8230;'> Biology</span></a><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl57_liPublication" data-pmid="31748743" data-citations="225" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl57_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl57_lblPublication">Circular ecDNA promotes accessible chromatin and high oncogene expression. Nature. 2019 11; 575(7784):699-703.</span> <span id="ctl01_rpPublication_ctl57_lblPublicationIDs">Wu S, Turner KM, Nguyen N, Raviram R, <a href="https://profiles.ucsd.edu/marcella.erb">Erb M</a>, Santini J, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Rajkumar U, Diao Y, Li B, Zhang W, Jameson N, <a href="https://profiles.ucsf.edu/ryan.corces">Corces MR</a>, Granja JM, Chen X, Coruh C, Abnousi A, Houston J, Ye Z, Hu R, Yu M, Kim H, <a href="https://profiles.ucsd.edu/julie.law">Law JA</a>, Verhaak RGW, Hu M, <a href="https://profiles.ucsd.edu/frank.furnari">Furnari FB</a>, Chang HY, <a href="https://profiles.ucsd.edu/bing.ren">Ren B</a>, <b>Bafna V</b>, Mischel PS. PMID: 31748743; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC7094777' target='_blank'>PMC7094777</a>.</span> </div> <div id="ctl01_rpPublication_ctl57_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/31748743 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/31748743/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">225</span></a><span id='spnHideOnNoAltmetric31748743'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='31748743'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl58_liPublication" data-pmid="31706138" data-citations="27" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl58_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl58_lblPublication">EcSeg: Semantic Segmentation of Metaphase Images Containing Extrachromosomal DNA. iScience. 2019 Nov 22; 21:428-435.</span> <span id="ctl01_rpPublication_ctl58_lblPublicationIDs">Rajkumar U, Turner K, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Deshpande V, <a href="https://profiles.ucsd.edu/manmohan.chandraker">Chandraker M</a>, Mischel P, <b>Bafna V</b>. PMID: 31706138; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC6849072' target='_blank'>PMC6849072</a>.</span> </div> <div id="ctl01_rpPublication_ctl58_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/31706138 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/31706138/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">27</span></a><span id='spnHideOnNoAltmetric31706138'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='31706138'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl59_liPublication" data-citations="3" data-Field30AEBF="1" data-pmid="31202632" data-FieldBFB330="1" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl59_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl59_lblPublication">Computing the Statistical Significance of Overlap between Genome Annotations with iStat. Cell Syst. 2019 06 26; 8(6):523-529.e4.</span> <span id="ctl01_rpPublication_ctl59_lblPublicationIDs">Sarmashghi S, <b>Bafna V</b>. PMID: 31202632; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC7200088' target='_blank'>PMC7200088</a>.</span> </div> <div id="ctl01_rpPublication_ctl59_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/31202632 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/31202632/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">3</span></a><span id='spnHideOnNoAltmetric31202632'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='31202632'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BFB330;' data-color="#BFB330" OnClick="toggleFilter('data-FieldBFB330')">Cel<span class='tooltiptext' style='background-color:#BFB330;'> Cell Biology</span></a><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl60_liPublication" data-pmid="31020842" data-citations="7" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl60_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl60_lblPublication">Proteogenomic Annotation of Chinese Hamsters Reveals Extensive Novel Translation Events and Endogenous Retroviral Elements. J Proteome Res. 2019 06 07; 18(6):2433-2445.</span> <span id="ctl01_rpPublication_ctl60_lblPublicationIDs">Li S, Cha SW, Heffner K, Hizal DB, Bowen MA, Chaerkady R, Cole RN, Tejwani V, Kaushik P, Henry M, Meleady P, Sharfstein ST, Betenbaugh MJ, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/nathan.lewis">Lewis NE</a>. PMID: 31020842; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC6571120' target='_blank'>PMC6571120</a>.</span> </div> <div id="ctl01_rpPublication_ctl60_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/31020842 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/31020842/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">7</span></a><span id='spnHideOnNoAltmetric31020842'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='31020842'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl61_liPublication" data-pmid="30872802" data-citations="141" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30A0BF="1"> <div> <span id="ctl01_rpPublication_ctl61_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl61_lblPublication">Extrachromosomal oncogene amplification in tumour pathogenesis and evolution. Nat Rev Cancer. 2019 05; 19(5):283-288.</span> <span id="ctl01_rpPublication_ctl61_lblPublicationIDs">Verhaak RGW, <b>Bafna V</b>, Mischel PS. PMID: 30872802; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC7168519' target='_blank'>PMC7168519</a>.</span> </div> <div id="ctl01_rpPublication_ctl61_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/30872802 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/30872802/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">141</span></a><span id='spnHideOnNoAltmetric30872802'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='30872802'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30A0BF;' data-color="#30A0BF" OnClick="toggleFilter('data-Field30A0BF')">Neo<span class='tooltiptext' style='background-color:#30A0BF;'> Neoplasms</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl62_liPublication" data-pmid="31019297" data-citations="103" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl62_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl62_lblPublication">NAD metabolic dependency in cancer is shaped by gene amplification and enhancer remodelling. Nature. 2019 05; 569(7757):570-575.</span> <span id="ctl01_rpPublication_ctl62_lblPublicationIDs">Chowdhry S, Zanca C, Rajkumar U, Koga T, Diao Y, Raviram R, Liu F, Turner K, Yang H, <a href="https://profiles.ucsd.edu/elizabeth.brunk">Brunk E</a>, Bi J, <a href="https://profiles.ucsd.edu/frank.furnari">Furnari F</a>, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/bing.ren">Ren B</a>, Mischel PS. PMID: 31019297; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC7138021' target='_blank'>PMC7138021</a>.</span> </div> <div id="ctl01_rpPublication_ctl62_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/31019297 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/31019297/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">103</span></a><span id='spnHideOnNoAltmetric31019297'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='31019297'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl63_liPublication" data-pmid="30760303" data-citations="49" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl63_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl63_lblPublication">Skmer: assembly-free and alignment-free sample identification using genome skims. Genome Biol. 2019 02 13; 20(1):34.</span> <span id="ctl01_rpPublication_ctl63_lblPublicationIDs">Sarmashghi S, Bohmann K, P Gilbert MT, <b>Bafna V</b>, Mirarab S. PMID: 30760303; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC6374904' target='_blank'>PMC6374904</a>.</span> </div> <div id="ctl01_rpPublication_ctl63_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/30760303 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/30760303/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">49</span></a><span id='spnHideOnNoAltmetric30760303'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='30760303'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl64_liPublication" data-FieldBF8230="1" data-FieldBE30BF="1" data-citations="132" data-pmid="30674876" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl64_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl64_lblPublication">Exploring the landscape of focal amplifications in cancer using AmpliconArchitect. Nat Commun. 2019 01 23; 10(1):392.</span> <span id="ctl01_rpPublication_ctl64_lblPublicationIDs">Deshpande V, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Nguyen ND, Bakhtiari M, Turner KM, Schwab R, Carter H, Mischel PS, <b>Bafna V</b>. PMID: 30674876; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC6344493' target='_blank'>PMC6344493</a>.</span> </div> <div id="ctl01_rpPublication_ctl64_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/30674876 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/30674876/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">132</span></a><span id='spnHideOnNoAltmetric30674876'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='30674876'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF8230;' data-color="#BF8230" OnClick="toggleFilter('data-FieldBF8230')">Bio<span class='tooltiptext' style='background-color:#BF8230;'> Biology</span></a><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl65_liPublication" data-pmid="30352806" data-citations="43" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl65_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl65_lblPublication">Targeted genotyping of variable number tandem repeats with adVNTR. Genome Res. 2018 11; 28(11):1709-1719.</span> <span id="ctl01_rpPublication_ctl65_lblPublicationIDs">Bakhtiari M, Shleizer-Burko S, <a href="https://profiles.ucsd.edu/melissa.gymrek">Gymrek M</a>, <a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>, <b>Bafna V</b>. PMID: 30352806; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC6211647' target='_blank'>PMC6211647</a>.</span> </div> <div id="ctl01_rpPublication_ctl65_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/30352806 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/30352806/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">43</span></a><span id='spnHideOnNoAltmetric30352806'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='30352806'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl66_liPublication" data-citations="14" data-Field30AEBF="1" data-pmid="30268435" data-FieldBFB330="1" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl66_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl66_lblPublication">ProteoStorm: An Ultrafast Metaproteomics Database Search Framework. Cell Syst. 2018 10 24; 7(4):463-467.e6.</span> <span id="ctl01_rpPublication_ctl66_lblPublicationIDs">Beyter D, Lin MS, Yu Y, Pieper R, <b>Bafna V</b>. PMID: 30268435; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC6231400' target='_blank'>PMC6231400</a>.</span> </div> <div id="ctl01_rpPublication_ctl66_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/30268435 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/30268435/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">14</span></a><span id='spnHideOnNoAltmetric30268435'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='30268435'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BFB330;' data-color="#BFB330" OnClick="toggleFilter('data-FieldBFB330')">Cel<span class='tooltiptext' style='background-color:#BFB330;'> Cell Biology</span></a><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl67_liPublication" data-pmid="30254217" data-citations="8" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF4E="1"> <div> <span id="ctl01_rpPublication_ctl67_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl67_lblPublication">Novel insight into the genetic basis of high-altitude pulmonary hypertension in Kyrgyz highlanders. Eur J Hum Genet. 2019 01; 27(1):150-159.</span> <span id="ctl01_rpPublication_ctl67_lblPublicationIDs">Iranmehr A, <a href="https://profiles.ucsd.edu/tsering.stobdan">Stobdan T</a>, <a href="https://profiles.ucsd.edu/dan.zhou">Zhou D</a>, <a href="https://profiles.ucsd.edu/orit.poulsen">Poulsen O</a>, Strohl KP, Aldashev A, Telenti A, Wong EHM, Kirkness EF, Venter JC, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>. PMID: 30254217; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC6303266' target='_blank'>PMC6303266</a>.</span> </div> <div id="ctl01_rpPublication_ctl67_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/30254217 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/30254217/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">8</span></a><span id='spnHideOnNoAltmetric30254217'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='30254217'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl68_liPublication" data-pmid="29579309" data-citations="28" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl68_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl68_lblPublication">ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer. Nucleic Acids Res. 2018 04 20; 46(7):3309-3325.</span> <span id="ctl01_rpPublication_ctl68_lblPublicationIDs">Nguyen ND, Deshpande V, <a href="https://profiles.ucsd.edu/jens-christian.luebeck">Luebeck J</a>, Mischel PS, <b>Bafna V</b>. PMID: 29579309; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC6283451' target='_blank'>PMC6283451</a>.</span> </div> <div id="ctl01_rpPublication_ctl68_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/29579309 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/29579309/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">28</span></a><span id='spnHideOnNoAltmetric29579309'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='29579309'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl69_liPublication" data-pmid="29457793" data-citations="35" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldA9BF30="1"> <div> <span id="ctl01_rpPublication_ctl69_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl69_lblPublication">Identifying the favored mutation in a positive selective sweep. Nat Methods. 2018 04; 15(4):279-282.</span> <span id="ctl01_rpPublication_ctl69_lblPublicationIDs">Akbari A, Vitti JJ, Iranmehr A, Bakhtiari M, Sabeti PC, Mirarab S, <b>Bafna V</b>. PMID: 29457793; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC6231406' target='_blank'>PMC6231406</a>.</span> </div> <div id="ctl01_rpPublication_ctl69_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/29457793 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/29457793/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">35</span></a><span id='spnHideOnNoAltmetric29457793'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='29457793'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #A9BF30;' data-color="#A9BF30" OnClick="toggleFilter('data-FieldA9BF30')">Cli<span class='tooltiptext' style='background-color:#A9BF30;'> Clinical Laboratory Techniques</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl70_liPublication" data-pmid="29331515" data-citations="15" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl70_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl70_lblPublication">MHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection. J Proteomics. 2018 03 30; 176:13-23.</span> <span id="ctl01_rpPublication_ctl70_lblPublicationIDs">Rozanov DV, Rozanov ND, Chiotti KE, Reddy A, Wilmarth PA, David LL, Cha SW, Woo S, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner P</a>, <b>Bafna V</b>, Burrows GG, Rantala JK, Levin T, Anur P, Johnson-Camacho K, Tabatabaei S, Munson DJ, Bruno TC, Slansky JE, Kappler JW, Hirano N, Boegel S, Fox BA, Egelston C, Simons DL, Jimenez G, Lee PP, Gray JW, <a href="https://profiles.ucla.edu/paul.spellman">Spellman PT</a>. PMID: 29331515; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC5999401' target='_blank'>PMC5999401</a>.</span> </div> <div id="ctl01_rpPublication_ctl70_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/29331515 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/29331515/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">15</span></a><span id='spnHideOnNoAltmetric29331515'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='29331515'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl71_liPublication" data-pmid="29029226" data-citations="18" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30AEBF="1"> <div> <span id="ctl01_rpPublication_ctl71_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl71_lblPublication">New Insights into the Genetic Basis of Monge's Disease and Adaptation to High-Altitude. Mol Biol Evol. 2017 Dec 01; 34(12):3154-3168.</span> <span id="ctl01_rpPublication_ctl71_lblPublicationIDs"><a href="https://profiles.ucsd.edu/tsering.stobdan">Stobdan T</a>, Akbari A, <a href="https://profiles.ucsd.edu/priti.azad">Azad P</a>, <a href="https://profiles.ucsd.edu/dan.zhou">Zhou D</a>, <a href="https://profiles.ucsd.edu/orit.poulsen">Poulsen O</a>, Appenzeller O, Gonzales GF, Telenti A, Wong EHM, Saini S, Kirkness EF, Venter JC, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>. PMID: 29029226; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC5850797' target='_blank'>PMC5850797</a>.</span> </div> <div id="ctl01_rpPublication_ctl71_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/29029226 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/29029226/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">18</span></a><span id='spnHideOnNoAltmetric29029226'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='29029226'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl72_liPublication" data-pmid="29078313" data-citations="29" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl72_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl72_lblPublication">Ultraaccurate genome sequencing and haplotyping of single human cells. Proc Natl Acad Sci U S A. 2017 11 21; 114(47):12512-12517.</span> <span id="ctl01_rpPublication_ctl72_lblPublicationIDs">Chu WK, Edge P, Lee HS, <a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>, <b>Bafna V</b>, Huang X, Zhang K. PMID: 29078313; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC5703283' target='_blank'>PMC5703283</a>.</span> </div> <div id="ctl01_rpPublication_ctl72_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/29078313 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/29078313/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">29</span></a><span id='spnHideOnNoAltmetric29078313'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='29078313'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl73_liPublication" data-FieldBF7C30="1" data-citations="4" data-Field30AEBF="1" data-pmid="29046389" data-FieldBFB330="1" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl73_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl73_lblPublication">The Antibody Repertoire of Colorectal Cancer. Mol Cell Proteomics. 2017 Dec; 16(12):2111-2124.</span> <span id="ctl01_rpPublication_ctl73_lblPublicationIDs">Cha SW, Bonissone S, Na S, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner PA</a>, <b>Bafna V</b>. PMID: 29046389; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC5724175' target='_blank'>PMC5724175</a>.</span> </div> <div id="ctl01_rpPublication_ctl73_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/29046389 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/29046389/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">4</span></a><span id='spnHideOnNoAltmetric29046389'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='29046389'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a><a class='publication-filter' style='border:1px solid #BFB330;' data-color="#BFB330" OnClick="toggleFilter('data-FieldBFB330')">Cel<span class='tooltiptext' style='background-color:#BFB330;'> Cell Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl74_liPublication" data-citations="50" data-Field30AEBF="1" data-Field30BF4E="1" data-pmid="28951950" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0"> <div> <span id="ctl01_rpPublication_ctl74_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl74_lblPublication">High-altitude adaptation in humans: from genomics to integrative physiology. J Mol Med (Berl). 2017 Dec; 95(12):1269-1282.</span> <span id="ctl01_rpPublication_ctl74_lblPublicationIDs"><a href="https://profiles.ucsd.edu/priti.azad">Azad P</a>, <a href="https://profiles.ucsd.edu/tsering.stobdan">Stobdan T</a>, <a href="https://profiles.ucsd.edu/dan.zhou">Zhou D</a>, Hartley I, Akbari A, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>. PMID: 28951950; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC8936998' target='_blank'>PMC8936998</a>.</span> </div> <div id="ctl01_rpPublication_ctl74_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/28951950 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/28951950/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">50</span></a><span id='spnHideOnNoAltmetric28951950'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='28951950'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl75_liPublication" data-pmid="28396506" data-citations="17" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl75_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl75_lblPublication">Clear: Composition of Likelihoods for Evolve and Resequence Experiments. Genetics. 2017 06; 206(2):1011-1023.</span> <span id="ctl01_rpPublication_ctl75_lblPublicationIDs">Iranmehr A, Akbari A, Schlötterer C, <b>Bafna V</b>. PMID: 28396506; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC5499160' target='_blank'>PMC5499160</a>.</span> </div> <div id="ctl01_rpPublication_ctl75_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/28396506 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/28396506/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">17</span></a><span id='spnHideOnNoAltmetric28396506'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='28396506'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl76_liPublication" data-pmid="28178237" data-citations="343" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl76_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl76_lblPublication">Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity. Nature. 2017 03 02; 543(7643):122-125.</span> <span id="ctl01_rpPublication_ctl76_lblPublicationIDs">Turner KM, Deshpande V, Beyter D, Koga T, <a href="https://profiles.ucsd.edu/jessica.rusert">Rusert J</a>, Lee C, Li B, <a href="https://profiles.ucsd.edu/karen.arden">Arden K</a>, <a href="https://profiles.ucsd.edu/bing.ren">Ren B</a>, <a href="https://profiles.ucla.edu/david.nathanson">Nathanson DA</a>, <a href="https://profiles.ucla.edu/harley.kornblum">Kornblum HI</a>, Taylor MD, <a href="https://profiles.ucsd.edu/sharmeela.kaushal">Kaushal S</a>, <a href="https://profiles.ucsd.edu/webster.cavenee">Cavenee WK</a>, <a href="https://profiles.ucsd.edu/robert.wechsler-reya">Wechsler-Reya R</a>, <a href="https://profiles.ucsd.edu/frank.furnari">Furnari FB</a>, <a href="https://profiles.ucsf.edu/scott.vandenberg">Vandenberg SR</a>, Rao PN, <a href="https://profiles.ucsd.edu/geoffrey.wahl">Wahl GM</a>, <b>Bafna V</b>, Mischel PS. PMID: 28178237; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC5334176' target='_blank'>PMC5334176</a>.</span> </div> <div id="ctl01_rpPublication_ctl76_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/28178237 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/28178237/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">343</span></a><span id='spnHideOnNoAltmetric28178237'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='28178237'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl77_liPublication" data-pmid="27940952" data-citations="172" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl77_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl77_lblPublication">HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies. Genome Res. 2017 05; 27(5):801-812.</span> <span id="ctl01_rpPublication_ctl77_lblPublicationIDs">Edge P, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>. PMID: 27940952; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC5411775' target='_blank'>PMC5411775</a>.</span> </div> <div id="ctl01_rpPublication_ctl77_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/27940952 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/27940952/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">172</span></a><span id='spnHideOnNoAltmetric27940952'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='27940952'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl78_liPublication" data-pmid="27902698" data-citations="0" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl78_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl78_lblPublication">Correction: Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele. PLoS Genet. 2016 Nov; 12(11):e1006472.</span> <span id="ctl01_rpPublication_ctl78_lblPublicationIDs">Ronen R, <a href="https://profiles.ucsd.edu/glenn.tesler">Tesler G</a>, Akbari A, Zakov S, Rosenberg NA, <b>Bafna V</b>. PMID: 27902698; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC5130173' target='_blank'>PMC5130173</a>.</span> </div> <div id="ctl01_rpPublication_ctl78_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/27902698 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric27902698'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='27902698'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl79_liPublication" data-FieldBF3E30="1" data-citations="17" data-pmid="27821551" data-Field30BFB5="1" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl79_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl79_lblPublication">Senp1 drives hypoxia-induced polycythemia via GATA1 and Bcl-xL in subjects with Monge's disease. J Exp Med. 2016 11 14; 213(12):2729-2744.</span> <span id="ctl01_rpPublication_ctl79_lblPublicationIDs"><a href="https://profiles.ucsd.edu/priti.azad">Azad P</a>, Zhao HW, Cabrales PJ, Ronen R, <a href="https://profiles.ucsd.edu/dan.zhou">Zhou D</a>, <a href="https://profiles.ucsd.edu/orit.poulsen">Poulsen O</a>, Appenzeller O, Hsiao YH, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>. PMID: 27821551; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC5110013' target='_blank'>PMC5110013</a>.</span> </div> <div id="ctl01_rpPublication_ctl79_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/27821551 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/27821551/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">17</span></a><span id='spnHideOnNoAltmetric27821551'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='27821551'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF3E30;' data-color="#BF3E30" OnClick="toggleFilter('data-FieldBF3E30')">All<span class='tooltiptext' style='background-color:#BF3E30;'> Allergy and Immunology</span></a><a class='publication-filter' style='border:1px solid #30BFB5;' data-color="#30BFB5" OnClick="toggleFilter('data-Field30BFB5')">Med<span class='tooltiptext' style='background-color:#30BFB5;'> Medicine (General)</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl80_liPublication" data-pmid="27372738" data-citations="531" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBFB330="1"> <div> <span id="ctl01_rpPublication_ctl80_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl80_lblPublication">Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer. Cell. 2016 Jul 28; 166(3):755-765.</span> <span id="ctl01_rpPublication_ctl80_lblPublicationIDs">Zhang H, Liu T, Zhang Z, Payne SH, Zhang B, McDermott JE, Zhou JY, Petyuk VA, Chen L, Ray D, Sun S, Yang F, Chen L, Wang J, Shah P, Cha SW, Aiyetan P, Woo S, Tian Y, Gritsenko MA, Clauss TR, Choi C, Monroe ME, Thomas S, Nie S, Wu C, Moore RJ, Yu KH, Tabb DL, Fenyö D, <b>Bafna V</b>, Wang Y, Rodriguez H, Boja ES, Hiltke T, Rivers RC, Sokoll L, Zhu H, Shih IM, Cope L, Pandey A, Zhang B, Snyder MP, Levine DA, Smith RD, Chan DW, Rodland KD, CPTAC Investigators. PMID: 27372738; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4967013' target='_blank'>PMC4967013</a>.</span> </div> <div id="ctl01_rpPublication_ctl80_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/27372738 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/27372738/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">531</span></a><span id='spnHideOnNoAltmetric27372738'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='27372738'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BFB330;' data-color="#BFB330" OnClick="toggleFilter('data-FieldBFB330')">Cel<span class='tooltiptext' style='background-color:#BFB330;'> Cell Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl81_liPublication" data-pmid="27105843" data-citations="1" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl81_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl81_lblPublication">InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms. Nucleic Acids Res. 2016 07 08; 44(12):e111.</span> <span id="ctl01_rpPublication_ctl81_lblPublicationIDs">Patel A, Edge P, Selvaraj S, <a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>, <b>Bafna V</b>. PMID: 27105843; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4937317' target='_blank'>PMC4937317</a>.</span> </div> <div id="ctl01_rpPublication_ctl81_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/27105843 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/27105843/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">1</span></a><span id='spnHideOnNoAltmetric27105843'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='27105843'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl82_liPublication" data-pmid="26896141" data-citations="14" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="1" data-TranslationClinicalTrial="0" data-Field30BCBF="1"> <div> <span id="ctl01_rpPublication_ctl82_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl82_lblPublication">Diversity, Productivity, and Stability of an Industrial Microbial Ecosystem. Appl Environ Microbiol. 2016 Apr; 82(8):2494-2505.</span> <span id="ctl01_rpPublication_ctl82_lblPublicationIDs">Beyter D, Tang PZ, Becker S, Hoang T, Bilgin D, Lim YW, Peterson TC, <a href="https://profiles.ucsd.edu/stephen.mayfield">Mayfield S</a>, Haerizadeh F, <a href="https://profiles.ucsd.edu/jonathan.shurin">Shurin JB</a>, <b>Bafna V</b>, McBride R. PMID: 26896141; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4959475' target='_blank'>PMC4959475</a>.</span> </div> <div id="ctl01_rpPublication_ctl82_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/26896141 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/26896141/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">14</span></a><span id='spnHideOnNoAltmetric26896141'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='26896141'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BCBF;' data-color="#30BCBF" OnClick="toggleFilter('data-Field30BCBF')">Mic<span class='tooltiptext' style='background-color:#30BCBF;'> Microbiology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a><a class='publication-filter publication-public-health' data-color='#609' OnClick="toggleFilter('data-TranslationPublicHealth')">PH<span class='tooltiptext' style='background-color:#609;'>Public Health</span></a> </div> </li> <li id="ctl01_rpPublication_ctl83_liPublication" data-FieldBE30BF="1" data-citations="19" data-pmid="26656423" data-Field30BFB5="1" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl83_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl83_lblPublication">The TGFβ1 Promoter SNP C-509T and Food Sensitization Promote Esophageal Remodeling in Pediatric Eosinophilic Esophagitis. PLoS One. 2015; 10(12):e0144651.</span> <span id="ctl01_rpPublication_ctl83_lblPublicationIDs">Rawson R, Anilkumar A, Newbury RO, <b>Bafna V</b>, Aquino M, Palmquist J, Hoffman HM, Mueller JL, <a href="https://profiles.ucsd.edu/ranjan.dohil">Dohil R</a>, <a href="https://profiles.ucsd.edu/david.broide">Broide DH</a>, <a href="https://profiles.ucsd.edu/seema.aceves">Aceves SS</a>. PMID: 26656423; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4678166' target='_blank'>PMC4678166</a>.</span> </div> <div id="ctl01_rpPublication_ctl83_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/26656423 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/26656423/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">19</span></a><span id='spnHideOnNoAltmetric26656423'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='26656423'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BFB5;' data-color="#30BFB5" OnClick="toggleFilter('data-Field30BFB5')">Med<span class='tooltiptext' style='background-color:#30BFB5;'> Medicine (General)</span></a><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl84_liPublication" data-pmid="26402243" data-citations="12" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl84_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl84_lblPublication">Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele. PLoS Genet. 2015 Sep; 11(9):e1005527.</span> <span id="ctl01_rpPublication_ctl84_lblPublicationIDs">Ronen R, <a href="https://profiles.ucsd.edu/glenn.tesler">Tesler G</a>, Akbari A, Zakov S, Rosenberg NA, <b>Bafna V</b>. PMID: 26402243; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4581834' target='_blank'>PMC4581834</a>.</span> </div> <div id="ctl01_rpPublication_ctl84_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/26402243 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/26402243/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">12</span></a><span id='spnHideOnNoAltmetric26402243'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='26402243'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl85_liPublication" data-citations="22" data-FieldBF5930="1" data-pmid="26719854" data-Field30BCBF="1" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0" data-Field6BBF30="1"> <div> <span id="ctl01_rpPublication_ctl85_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl85_lblPublication">Next-Generation Sequencing of Plasmodium vivax Patient Samples Shows Evidence of Direct Evolution in Drug-Resistance Genes. ACS Infect Dis. 2015 Aug 14; 1(8):367-79.</span> <span id="ctl01_rpPublication_ctl85_lblPublicationIDs">Flannery EL, Wang T, Akbari A, Corey VC, Gunawan F, Bright AT, Abraham M, Sanchez JF, Santolalla ML, Baldeviano GC, Edgel KA, Rosales LA, Lescano AG, <b>Bafna V</b>, Vinetz JM, <a href="https://profiles.ucsd.edu/elizabeth.winzeler">Winzeler EA</a>. PMID: 26719854; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4692371' target='_blank'>PMC4692371</a>.</span> </div> <div id="ctl01_rpPublication_ctl85_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/26719854 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/26719854/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">22</span></a><span id='spnHideOnNoAltmetric26719854'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='26719854'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF5930;' data-color="#BF5930" OnClick="toggleFilter('data-FieldBF5930')">Ant<span class='tooltiptext' style='background-color:#BF5930;'> Anti-Infective Agents</span></a><a class='publication-filter' style='border:1px solid #6BBF30;' data-color="#6BBF30" OnClick="toggleFilter('data-Field6BBF30')">Dru<span class='tooltiptext' style='background-color:#6BBF30;'> Drug Therapy</span></a><a class='publication-filter' style='border:1px solid #30BCBF;' data-color="#30BCBF" OnClick="toggleFilter('data-Field30BCBF')">Mic<span class='tooltiptext' style='background-color:#30BCBF;'> Microbiology</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl86_liPublication" data-pmid="26240367" data-citations="26" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl86_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl86_lblPublication">Endothelin receptor B, a candidate gene from human studies at high altitude, improves cardiac tolerance to hypoxia in genetically engineered heterozygote mice. Proc Natl Acad Sci U S A. 2015 Aug 18; 112(33):10425-30.</span> <span id="ctl01_rpPublication_ctl86_lblPublicationIDs"><a href="https://profiles.ucsd.edu/tsering.stobdan">Stobdan T</a>, <a href="https://profiles.ucsd.edu/dan.zhou">Zhou D</a>, Ao-Ieong E, Ortiz D, Ronen R, Hartley I, Gan Z, <a href="https://profiles.ucsd.edu/andrew.mcculloch">McCulloch AD</a>, <b>Bafna V</b>, Cabrales P, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>. PMID: 26240367; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4547246' target='_blank'>PMC4547246</a>.</span> </div> <div id="ctl01_rpPublication_ctl86_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/26240367 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/26240367/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">26</span></a><span id='spnHideOnNoAltmetric26240367'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='26240367'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl87_liPublication" data-pmid="26139413" data-citations="18" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl87_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl87_lblPublication">Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer. J Proteome Res. 2015 Sep 04; 14(9):3555-67.</span> <span id="ctl01_rpPublication_ctl87_lblPublicationIDs">Woo S, Cha SW, Bonissone S, Na S, Tabb DL, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner PA</a>, <b>Bafna V</b>. PMID: 26139413; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4868822' target='_blank'>PMC4868822</a>.</span> </div> <div id="ctl01_rpPublication_ctl87_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/26139413 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/26139413/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">18</span></a><span id='spnHideOnNoAltmetric26139413'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='26139413'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl88_liPublication" data-citations="7" data-Field30AEBF="1" data-pmid="26020441" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl88_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl88_lblPublication">Reconstructing breakage fusion bridge architectures using noisy copy numbers. J Comput Biol. 2015 Jun; 22(6):577-94.</span> <span id="ctl01_rpPublication_ctl88_lblPublicationIDs">Zakov S, <b>Bafna V</b>. PMID: 26020441; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4449712' target='_blank'>PMC4449712</a>.</span> </div> <div id="ctl01_rpPublication_ctl88_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/26020441 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/26020441/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">7</span></a><span id='spnHideOnNoAltmetric26020441'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='26020441'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl89_liPublication" data-pmid="25263569" data-citations="30" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl89_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl89_lblPublication">Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data. Proteomics. 2014 Dec; 14(23-24):2719-30.</span> <span id="ctl01_rpPublication_ctl89_lblPublicationIDs">Woo S, Cha SW, Na S, <a href="https://profiles.ucsd.edu/clark.guest">Guest C</a>, Liu T, Smith RD, Rodland KD, Payne S, <b>Bafna V</b>. PMID: 25263569; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4256132' target='_blank'>PMC4256132</a>.</span> </div> <div id="ctl01_rpPublication_ctl89_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/25263569 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/25263569/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">30</span></a><span id='spnHideOnNoAltmetric25263569'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='25263569'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl90_liPublication" data-citations="13" data-Field42BF30="1" data-Field30BF4E="1" data-pmid="25371374" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0"> <div> <span id="ctl01_rpPublication_ctl90_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl90_lblPublication">Genetic simulation tools for post-genome wide association studies of complex diseases. Genet Epidemiol. 2015 Jan; 39(1):11-19.</span> <span id="ctl01_rpPublication_ctl90_lblPublicationIDs">Chen HS, Hutter CM, Mechanic LE, Amos CI, <b>Bafna V</b>, Hauser ER, <a href="https://profiles.ucsf.edu/ryan.hernandez">Hernandez RD</a>, Li C, Liberles DA, McAllister K, Moore JH, Paltoo DN, Papanicolaou GJ, Peng B, Ritchie MD, Rosenfeld G, <a href="https://profiles.ucsf.edu/john.witte">Witte JS</a>, Gillanders EM, Feuer EJ. PMID: 25371374; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4270837' target='_blank'>PMC4270837</a>.</span> </div> <div id="ctl01_rpPublication_ctl90_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/25371374 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/25371374/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">13</span></a><span id='spnHideOnNoAltmetric25371374'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='25371374'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #42BF30;' data-color="#42BF30" OnClick="toggleFilter('data-Field42BF30')">Epi<span class='tooltiptext' style='background-color:#42BF30;'> Epidemiology</span></a><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl91_liPublication" data-pmid="25362634" data-citations="16" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field6530BF="1"> <div> <span id="ctl01_rpPublication_ctl91_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl91_lblPublication">The genetic basis of chronic mountain sickness. Physiology (Bethesda). 2014 Nov; 29(6):403-12.</span> <span id="ctl01_rpPublication_ctl91_lblPublicationIDs">Ronen R, <a href="https://profiles.ucsd.edu/dan.zhou">Zhou D</a>, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>. PMID: 25362634; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4280153' target='_blank'>PMC4280153</a>.</span> </div> <div id="ctl01_rpPublication_ctl91_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/25362634 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/25362634/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">16</span></a><span id='spnHideOnNoAltmetric25362634'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='25362634'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #6530BF;' data-color="#6530BF" OnClick="toggleFilter('data-Field6530BF')">Phy<span class='tooltiptext' style='background-color:#6530BF;'> Physiology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl92_liPublication" data-FieldBF7C30="1" data-citations="16" data-Field30AEBF="1" data-pmid="25060758" data-FieldBFB330="1" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl92_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl92_lblPublication">Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis. Mol Cell Proteomics. 2014 Nov; 13(11):3184-98.</span> <span id="ctl01_rpPublication_ctl92_lblPublicationIDs">Kelkar DS, Provost E, Chaerkady R, Muthusamy B, Manda SS, Subbannayya T, Selvan LD, Wang CH, Datta KK, Woo S, Dwivedi SB, Renuse S, Getnet D, Huang TC, Kim MS, Pinto SM, Mitchell CJ, Madugundu AK, Kumar P, Sharma J, Advani J, Dey G, Balakrishnan L, Syed N, Nanjappa V, Subbannayya Y, Goel R, Prasad TS, <b>Bafna V</b>, Sirdeshmukh R, Gowda H, Wang C, Leach SD, Pandey A. PMID: 25060758; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4223501' target='_blank'>PMC4223501</a>.</span> </div> <div id="ctl01_rpPublication_ctl92_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/25060758 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/25060758/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">16</span></a><span id='spnHideOnNoAltmetric25060758'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='25060758'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a><a class='publication-filter' style='border:1px solid #BFB330;' data-color="#BFB330" OnClick="toggleFilter('data-FieldBFB330')">Cel<span class='tooltiptext' style='background-color:#BFB330;'> Cell Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl93_liPublication" data-pmid="24939897" data-citations="24" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl93_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl93_lblPublication">The elusive evidence for chromothripsis. Nucleic Acids Res. 2014 Jul; 42(13):8231-42.</span> <span id="ctl01_rpPublication_ctl93_lblPublicationIDs">Kinsella M, Patel A, <b>Bafna V</b>. PMID: 24939897; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4117757' target='_blank'>PMC4117757</a>.</span> </div> <div id="ctl01_rpPublication_ctl93_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/24939897 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24939897/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">24</span></a><span id='spnHideOnNoAltmetric24939897'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='24939897'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl94_liPublication" data-pmid="24932003" data-citations="43" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl94_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl94_lblPublication">Inferring gene ontologies from pairwise similarity data. Bioinformatics. 2014 Jun 15; 30(12):i34-42.</span> <span id="ctl01_rpPublication_ctl94_lblPublicationIDs">Kramer M, Dutkowski J, Yu M, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/trey.ideker">Ideker T</a>. PMID: 24932003; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4058954' target='_blank'>PMC4058954</a>.</span> </div> <div id="ctl01_rpPublication_ctl94_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/24932003 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24932003/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">43</span></a><span id='spnHideOnNoAltmetric24932003'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='24932003'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl95_liPublication" data-pmid="24555826" data-citations="40" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl95_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl95_lblPublication">Whole genome sequencing of Ethiopian highlanders reveals conserved hypoxia tolerance genes. Genome Biol. 2014 Feb 20; 15(2):R36.</span> <span id="ctl01_rpPublication_ctl95_lblPublicationIDs">Udpa N, Ronen R, <a href="https://profiles.ucsd.edu/dan.zhou">Zhou D</a>, Liang J, <a href="https://profiles.ucsd.edu/tsering.stobdan">Stobdan T</a>, Appenzeller O, Yin Y, Du Y, Guo L, Cao R, Wang Y, Jin X, Huang C, Jia W, Cao D, Guo G, Claydon VE, Hainsworth R, Gamboa JL, Zibenigus M, Zenebe G, <a href="https://profiles.ucsd.edu/jin.xue">Xue J</a>, Liu S, <a href="https://profiles.ucsd.edu/kelly.frazer">Frazer KA</a>, Li Y, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>. PMID: 24555826; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4054780' target='_blank'>PMC4054780</a>.</span> </div> <div id="ctl01_rpPublication_ctl95_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/24555826 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24555826/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">40</span></a><span id='spnHideOnNoAltmetric24555826'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='24555826'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl96_liPublication" data-pmid="24307551" data-citations="13" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl96_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl96_lblPublication">Amplification and thrifty single-molecule sequencing of recurrent somatic structural variations. Genome Res. 2014 Feb; 24(2):318-28.</span> <span id="ctl01_rpPublication_ctl96_lblPublicationIDs">Patel A, Schwab R, Liu YT, <b>Bafna V</b>. PMID: 24307551; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3912422' target='_blank'>PMC3912422</a>.</span> </div> <div id="ctl01_rpPublication_ctl96_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/24307551 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24307551/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">13</span></a><span id='spnHideOnNoAltmetric24307551'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='24307551'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl97_liPublication" data-FieldBF7C30="1" data-citations="30" data-Field30AEBF="1" data-pmid="24142994" data-FieldBFB330="1" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="0"> <div> <span id="ctl01_rpPublication_ctl97_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl97_lblPublication">An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays. Mol Cell Proteomics. 2014 Jan; 13(1):157-67.</span> <span id="ctl01_rpPublication_ctl97_lblPublicationIDs">Castellana NE, <a href="https://profiles.ucsd.edu/zhouxin.shen">Shen Z</a>, He Y, Walley JW, Cassidy CJ, <a href="https://profiles.ucsd.edu/steven.briggs">Briggs SP</a>, <b>Bafna V</b>. PMID: 24142994; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3879611' target='_blank'>PMC3879611</a>.</span> </div> <div id="ctl01_rpPublication_ctl97_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/24142994 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24142994/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">30</span></a><span id='spnHideOnNoAltmetric24142994'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='24142994'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a><a class='publication-filter' style='border:1px solid #BFB330;' data-color="#BFB330" OnClick="toggleFilter('data-FieldBFB330')">Cel<span class='tooltiptext' style='background-color:#BFB330;'> Cell Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl98_liPublication" data-pmid="23987214" data-citations="37" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl98_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl98_lblPublication">Virmid: accurate detection of somatic mutations with sample impurity inference. Genome Biol. 2013 Aug 29; 14(8):R90.</span> <span id="ctl01_rpPublication_ctl98_lblPublicationIDs">Kim S, Jeong K, Bhutani K, Lee J, Patel A, Scott E, Nam H, Lee H, <a href="https://profiles.ucsd.edu/joseph.gleeson">Gleeson JG</a>, <b>Bafna V</b>. PMID: 23987214; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4054681' target='_blank'>PMC4054681</a>.</span> </div> <div id="ctl01_rpPublication_ctl98_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/23987214 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23987214/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">37</span></a><span id='spnHideOnNoAltmetric23987214'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='23987214'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl99_liPublication" data-pmid="23954164" data-citations="64" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF4E="1"> <div> <span id="ctl01_rpPublication_ctl99_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl99_lblPublication">Whole-genome sequencing uncovers the genetic basis of chronic mountain sickness in Andean highlanders. Am J Hum Genet. 2013 Sep 05; 93(3):452-62.</span> <span id="ctl01_rpPublication_ctl99_lblPublicationIDs"><a href="https://profiles.ucsd.edu/dan.zhou">Zhou D</a>, Udpa N, Ronen R, <a href="https://profiles.ucsd.edu/tsering.stobdan">Stobdan T</a>, Liang J, Appenzeller O, Zhao HW, Yin Y, Du Y, Guo L, Cao R, Wang Y, <a href="https://profiles.ucsd.edu/xin.null.jin">Jin X</a>, Huang C, Jia W, Cao D, Guo G, Gamboa JL, Villafuerte F, Callacondo D, <a href="https://profiles.ucsd.edu/jin.xue">Xue J</a>, Liu S, <a href="https://profiles.ucsd.edu/kelly.frazer">Frazer KA</a>, Li Y, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>. PMID: 23954164; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3769925' target='_blank'>PMC3769925</a>.</span> </div> <div id="ctl01_rpPublication_ctl99_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/23954164 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23954164/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">64</span></a><span id='spnHideOnNoAltmetric23954164'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='23954164'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl100_liPublication" data-pmid="23802565" data-citations="43" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl100_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl100_lblPublication">Proteogenomic database construction driven from large scale RNA-seq data. J Proteome Res. 2014 Jan 03; 13(1):21-8.</span> <span id="ctl01_rpPublication_ctl100_lblPublicationIDs">Woo S, Cha SW, Merrihew G, He Y, Castellana N, <a href="https://profiles.ucsd.edu/clark.guest">Guest C</a>, MacCoss M, <b>Bafna V</b>. PMID: 23802565; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4034692' target='_blank'>PMC4034692</a>.</span> </div> <div id="ctl01_rpPublication_ctl100_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/23802565 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23802565/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">43</span></a><span id='spnHideOnNoAltmetric23802565'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='23802565'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl101_liPublication" data-pmid="23770700" data-citations="58" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl101_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl101_lblPublication">Learning natural selection from the site frequency spectrum. Genetics. 2013 Sep; 195(1):181-93.</span> <span id="ctl01_rpPublication_ctl101_lblPublicationIDs">Ronen R, Udpa N, <a href="https://profiles.ucla.edu/eran.halperin">Halperin E</a>, <b>Bafna V</b>. PMID: 23770700; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3761300' target='_blank'>PMC3761300</a>.</span> </div> <div id="ctl01_rpPublication_ctl101_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/23770700 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23770700/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">58</span></a><span id='spnHideOnNoAltmetric23770700'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='23770700'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl102_liPublication" data-pmid="23751181" data-citations="10" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl102_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl102_lblPublication">Using Genome Query Language to uncover genetic variation. Bioinformatics. 2014 Jan 01; 30(1):1-8.</span> <span id="ctl01_rpPublication_ctl102_lblPublicationIDs">Kozanitis C, Heiberg A, Varghese G, <b>Bafna V</b>. PMID: 23751181; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3866549' target='_blank'>PMC3866549</a>.</span> </div> <div id="ctl01_rpPublication_ctl102_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/23751181 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23751181/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">10</span></a><span id='spnHideOnNoAltmetric23751181'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='23751181'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl103_liPublication" data-pmid="23658221" data-citations="3" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl103_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl103_lblPublication">Reprever: resolving low-copy duplicated sequences using template driven assembly. Nucleic Acids Res. 2013 Jul; 41(12):e128.</span> <span id="ctl01_rpPublication_ctl103_lblPublicationIDs">Kim S, Medvedev P, Paton TA, <b>Bafna V</b>. PMID: 23658221; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3695505' target='_blank'>PMC3695505</a>.</span> </div> <div id="ctl01_rpPublication_ctl103_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/23658221 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23658221/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">3</span></a><span id='spnHideOnNoAltmetric23658221'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='23658221'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl104_liPublication" data-pmid="23734567" data-citations="0" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl104_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl104_lblPublication">Evaluating genome architecture of a complex region via generalized bipartite matching. BMC Bioinformatics. 2013; 14 Suppl 5:S13.</span> <span id="ctl01_rpPublication_ctl104_lblPublicationIDs">Lo C, Kim S, Zakov S, <b>Bafna V</b>. PMID: 23734567; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3622632' target='_blank'>PMC3622632</a>.</span> </div> <div id="ctl01_rpPublication_ctl104_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/23734567 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric23734567'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='23734567'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl105_liPublication" data-pmid="23503850" data-citations="37" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl105_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl105_lblPublication">An algorithmic approach for breakage-fusion-bridge detection in tumor genomes. Proc Natl Acad Sci U S A. 2013 Apr 02; 110(14):5546-51.</span> <span id="ctl01_rpPublication_ctl105_lblPublicationIDs">Zakov S, Kinsella M, <b>Bafna V</b>. PMID: 23503850; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3619374' target='_blank'>PMC3619374</a>.</span> </div> <div id="ctl01_rpPublication_ctl105_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/23503850 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23503850/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">37</span></a><span id='spnHideOnNoAltmetric23503850'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='23503850'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl106_liPublication" data-pmid="23413434" data-citations="18" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl106_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl106_lblPublication">Wessim: a whole-exome sequencing simulator based on in silico exome capture. Bioinformatics. 2013 Apr 15; 29(8):1076-7.</span> <span id="ctl01_rpPublication_ctl106_lblPublicationIDs">Kim S, Jeong K, <b>Bafna V</b>. PMID: 23413434; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3624799' target='_blank'>PMC3624799</a>.</span> </div> <div id="ctl01_rpPublication_ctl106_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/23413434 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23413434/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">18</span></a><span id='spnHideOnNoAltmetric23413434'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='23413434'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl107_liPublication" data-pmid="24028704" data-citations="11" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl107_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl107_lblPublication">On the design of clone-based haplotyping. Genome Biol. 2013; 14(9):R100.</span> <span id="ctl01_rpPublication_ctl107_lblPublicationIDs">Lo C, Liu R, Lee J, Robasky K, Byrne S, Lucchesi C, Aach J, Church G, <b>Bafna V</b>, Zhang K. PMID: 24028704; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4053695' target='_blank'>PMC4053695</a>.</span> </div> <div id="ctl01_rpPublication_ctl107_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/24028704 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24028704/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">11</span></a><span id='spnHideOnNoAltmetric24028704'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='24028704'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl108_liPublication" data-pmid="25284821" data-citations="2" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl108_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl108_lblPublication">Abstractions for Genomics. Commun ACM. 2013 Jan; 56(1):83-93.</span> <span id="ctl01_rpPublication_ctl108_lblPublicationIDs"><b>Bafna V</b>, Kozanitis C, Deutsch A, <a href="https://profiles.ucsd.edu/lucila.ohno-machado">Ohno-Machado L</a>, Heiberg A, Varghese G. PMID: 25284821; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4183138' target='_blank'>PMC4183138</a>.</span> </div> <div id="ctl01_rpPublication_ctl108_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/25284821 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/25284821/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">2</span></a><span id='spnHideOnNoAltmetric25284821'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='25284821'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl109_liPublication" data-pmid="22729223" data-citations="301" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF4E="1"> <div> <span id="ctl01_rpPublication_ctl109_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl109_lblPublication">De novo somatic mutations in components of the PI3K-AKT3-mTOR pathway cause hemimegalencephaly. Nat Genet. 2012 Jun 24; 44(8):941-5.</span> <span id="ctl01_rpPublication_ctl109_lblPublicationIDs">Lee JH, Huynh M, Silhavy JL, Kim S, Dixon-Salazar T, Heiberg A, Scott E, <b>Bafna V</b>, Hill KJ, Collazo A, Funari V, Russ C, Gabriel SB, Mathern GW, <a href="https://profiles.ucsd.edu/joseph.gleeson">Gleeson JG</a>. PMID: 22729223; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4417942' target='_blank'>PMC4417942</a>.</span> </div> <div id="ctl01_rpPublication_ctl109_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/22729223 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22729223/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">301</span></a><span id='spnHideOnNoAltmetric22729223'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='22729223'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF4E;' data-color="#30BF4E" OnClick="toggleFilter('data-Field30BF4E')">Gen<span class='tooltiptext' style='background-color:#30BF4E;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl110_liPublication" data-FieldBE30BF="1" data-citations="142" data-pmid="22700954" data-Field30BFB5="1" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0"> <div> <span id="ctl01_rpPublication_ctl110_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl110_lblPublication">Exome sequencing can improve diagnosis and alter patient management. Sci Transl Med. 2012 Jun 13; 4(138):138ra78.</span> <span id="ctl01_rpPublication_ctl110_lblPublicationIDs">Dixon-Salazar TJ, Silhavy JL, Udpa N, Schroth J, Bielas S, Schaffer AE, Olvera J, <b>Bafna V</b>, Zaki MS, Abdel-Salam GH, Mansour LA, Selim L, Abdel-Hadi S, Marzouki N, Ben-Omran T, Al-Saana NA, Sonmez FM, Celep F, Azam M, Hill KJ, Collazo A, Fenstermaker AG, Novarino G, Akizu N, Garimella KV, Sougnez C, Russ C, Gabriel SB, <a href="https://profiles.ucsd.edu/joseph.gleeson">Gleeson JG</a>. PMID: 22700954; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4442637' target='_blank'>PMC4442637</a>.</span> </div> <div id="ctl01_rpPublication_ctl110_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/22700954 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22700954/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">142</span></a><span id='spnHideOnNoAltmetric22700954'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='22700954'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BFB5;' data-color="#30BFB5" OnClick="toggleFilter('data-Field30BFB5')">Med<span class='tooltiptext' style='background-color:#30BFB5;'> Medicine (General)</span></a><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl111_liPublication" data-pmid="22543365" data-citations="9" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl111_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl111_lblPublication">Speeding up tandem mass spectral identification using indexes. Bioinformatics. 2012 Jul 01; 28(13):1692-7.</span> <span id="ctl01_rpPublication_ctl111_lblPublicationIDs">Liu X, Mammana A, <b>Bafna V</b>. PMID: 22543365; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3381964' target='_blank'>PMC3381964</a>.</span> </div> <div id="ctl01_rpPublication_ctl111_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/22543365 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22543365/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">9</span></a><span id='spnHideOnNoAltmetric22543365'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='22543365'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl112_liPublication" data-citations="11" data-Field30AEBF="1" data-pmid="22506505" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl112_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl112_lblPublication">Combinatorics of the breakage-fusion-bridge mechanism. J Comput Biol. 2012 Jun; 19(6):662-78.</span> <span id="ctl01_rpPublication_ctl112_lblPublicationIDs">Kinsella M, <b>Bafna V</b>. PMID: 22506505; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3375649' target='_blank'>PMC3375649</a>.</span> </div> <div id="ctl01_rpPublication_ctl112_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/22506505 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22506505/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">11</span></a><span id='spnHideOnNoAltmetric22506505'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='22506505'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl113_liPublication" data-citations="23" data-Field30AEBF="1" data-pmid="22414154" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="1" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl113_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl113_lblPublication">Accurate mass spectrometry based protein quantification via shared peptides. J Comput Biol. 2012 Apr; 19(4):337-48.</span> <span id="ctl01_rpPublication_ctl113_lblPublicationIDs">Dost B, <a href="https://profiles.ucsd.edu/nuno.bandeira">Bandeira N</a>, Li X, <a href="https://profiles.ucsd.edu/zhouxin.shen">Shen Z</a>, <a href="https://profiles.ucsd.edu/steven.briggs">Briggs SP</a>, <b>Bafna V</b>. PMID: 22414154; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3317402' target='_blank'>PMC3317402</a>.</span> </div> <div id="ctl01_rpPublication_ctl113_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/22414154 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22414154/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">23</span></a><span id='spnHideOnNoAltmetric22414154'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='22414154'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl114_liPublication" data-FieldBE30BF="1" data-citations="2" data-pmid="22363405" data-Field30BFB5="1" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0"> <div> <span id="ctl01_rpPublication_ctl114_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl114_lblPublication">Sample reproducibility of genetic association using different multimarker TDTs in genome-wide association studies: characterization and a new approach. PLoS One. 2012; 7(2):e29613.</span> <span id="ctl01_rpPublication_ctl114_lblPublicationIDs">Abad-Grau MM, Medina-Medina N, Montes-Soldado R, Matesanz F, <b>Bafna V</b>. PMID: 22363405; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3281822' target='_blank'>PMC3281822</a>.</span> </div> <div id="ctl01_rpPublication_ctl114_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/22363405 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22363405/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">2</span></a><span id='spnHideOnNoAltmetric22363405'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='22363405'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BFB5;' data-color="#30BFB5" OnClick="toggleFilter('data-Field30BFB5')">Med<span class='tooltiptext' style='background-color:#30BFB5;'> Medicine (General)</span></a><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl115_liPublication" data-pmid="22156296" data-citations="293" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl115_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl115_lblPublication">Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. Genome Res. 2012 Feb; 22(2):246-58.</span> <span id="ctl01_rpPublication_ctl115_lblPublicationIDs">Hon GC, Hawkins RD, Caballero OL, Lo C, Lister R, Pelizzola M, Valsesia A, Ye Z, <a href="https://profiles.ucsd.edu/sam.kuan">Kuan S</a>, Edsall LE, Camargo AA, Stevenson BJ, <a href="https://profiles.ucsd.edu/joseph.ecker">Ecker JR</a>, <b>Bafna V</b>, Strausberg RL, Simpson AJ, Ren B. PMID: 22156296; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3266032' target='_blank'>PMC3266032</a>.</span> </div> <div id="ctl01_rpPublication_ctl115_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/22156296 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22156296/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">293</span></a><span id='spnHideOnNoAltmetric22156296'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='22156296'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl116_liPublication" data-pmid="22303377" data-citations="3" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0"> <div> <span id="ctl01_rpPublication_ctl116_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl116_lblPublication">Tests of selection in pooled case-control data: an empirical study. Front Genet. 2011; 2:83.</span> <span id="ctl01_rpPublication_ctl116_lblPublicationIDs">Udpa N, <a href="https://profiles.ucsd.edu/dan.zhou">Zhou D</a>, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>, <b>Bafna V</b>. PMID: 22303377; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3268381' target='_blank'>PMC3268381</a>.</span> </div> <div id="ctl01_rpPublication_ctl116_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/22303377 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22303377/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">3</span></a><span id='spnHideOnNoAltmetric22303377'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='22303377'></span></span> </div> </li> <li id="ctl01_rpPublication_ctl117_liPublication" data-pmid="22081224" data-citations="72" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BFAE="1"> <div> <span id="ctl01_rpPublication_ctl117_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl117_lblPublication">iDASH: integrating data for analysis, anonymization, and sharing. J Am Med Inform Assoc. 2012 Mar-Apr; 19(2):196-201.</span> <span id="ctl01_rpPublication_ctl117_lblPublicationIDs"><a href="https://profiles.ucsd.edu/lucila.ohno-machado">Ohno-Machado L</a>, <b>Bafna V</b>, Boxwala AA, Chapman BE, Chapman WW, <a href="https://profiles.ucsd.edu/kamalika.chaudhuri">Chaudhuri K</a>, Day ME, Farcas C, Heintzman ND, Jiang X, Kim H, Kim J, Matheny ME, Resnic FS, Vinterbo SA, iDASH team. PMID: 22081224; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3277627' target='_blank'>PMC3277627</a>.</span> </div> <div id="ctl01_rpPublication_ctl117_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/22081224 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22081224/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">72</span></a><span id='spnHideOnNoAltmetric22081224'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='22081224'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BFAE;' data-color="#30BFAE" OnClick="toggleFilter('data-Field30BFAE')">Med<span class='tooltiptext' style='background-color:#30BFAE;'> Medical Informatics</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl118_liPublication" data-FieldBF7C30="1" data-citations="85" data-Field30AEBF="1" data-pmid="22027200" data-FieldBFB330="1" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl118_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl118_lblPublication">Protein identification using top-down. Mol Cell Proteomics. 2012 Jun; 11(6):M111.008524.</span> <span id="ctl01_rpPublication_ctl118_lblPublicationIDs">Liu X, Sirotkin Y, Shen Y, Anderson G, Tsai YS, Ting YS, Goodlett DR, Smith RD, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner PA</a>. PMID: 22027200; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3433905' target='_blank'>PMC3433905</a>.</span> </div> <div id="ctl01_rpPublication_ctl118_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/22027200 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22027200/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">85</span></a><span id='spnHideOnNoAltmetric22027200'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='22027200'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a><a class='publication-filter' style='border:1px solid #BFB330;' data-color="#BFB330" OnClick="toggleFilter('data-FieldBFB330')">Cel<span class='tooltiptext' style='background-color:#BFB330;'> Cell Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl119_liPublication" data-pmid="21800894" data-citations="12" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl119_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl119_lblPublication">AMASS: algorithm for MSI analysis by semi-supervised segmentation. J Proteome Res. 2011 Oct 07; 10(10):4734-43.</span> <span id="ctl01_rpPublication_ctl119_lblPublicationIDs">Bruand J, Alexandrov T, Sistla S, Wisztorski M, Meriaux C, Becker M, Salzet M, Fournier I, <a href="https://profiles.ucsd.edu/eduardo.macagno">Macagno E</a>, <b>Bafna V</b>. PMID: 21800894; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3190602' target='_blank'>PMC3190602</a>.</span> </div> <div id="ctl01_rpPublication_ctl119_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/21800894 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21800894/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">12</span></a><span id='spnHideOnNoAltmetric21800894'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='21800894'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl120_liPublication" data-pmid="20479508" data-citations="4" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl120_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl120_lblPublication">TCLUST: a fast method for clustering genome-scale expression data. IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun; 8(3):808-18.</span> <span id="ctl01_rpPublication_ctl120_lblPublicationIDs">Dost B, Wu C, Su A, <b>Bafna V</b>. PMID: 20479508.</span> </div> <div id="ctl01_rpPublication_ctl120_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/20479508 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20479508/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">4</span></a><span id='spnHideOnNoAltmetric20479508'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='20479508'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl121_liPublication" data-pmid="21332220" data-citations="13" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl121_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl121_lblPublication">Automated querying and identification of novel peptides using MALDI mass spectrometric imaging. J Proteome Res. 2011 Apr 01; 10(4):1915-28.</span> <span id="ctl01_rpPublication_ctl121_lblPublicationIDs">Bruand J, Sistla S, Mériaux C, <a href="https://profiles.ucsd.edu/pieter.dorrestein">Dorrestein PC</a>, Gaasterland T, <a href="https://profiles.ucsd.edu/majid.ghassemian">Ghassemian M</a>, Wisztorski M, Fournier I, Salzet M, <a href="https://profiles.ucsd.edu/eduardo.macagno">Macagno E</a>, <b>Bafna V</b>. PMID: 21332220; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC4845900' target='_blank'>PMC4845900</a>.</span> </div> <div id="ctl01_rpPublication_ctl121_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/21332220 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21332220/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">13</span></a><span id='spnHideOnNoAltmetric21332220'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='21332220'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl122_liPublication" data-citations="37" data-Field30AEBF="1" data-pmid="21385043" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl122_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl122_lblPublication">Compressing genomic sequence fragments using SlimGene. J Comput Biol. 2011 Mar; 18(3):401-13.</span> <span id="ctl01_rpPublication_ctl122_lblPublicationIDs">Kozanitis C, Saunders C, Kruglyak S, <b>Bafna V</b>, Varghese G. PMID: 21385043; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3123913' target='_blank'>PMC3123913</a>.</span> </div> <div id="ctl01_rpPublication_ctl122_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/21385043 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21385043/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">37</span></a><span id='spnHideOnNoAltmetric21385043'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='21385043'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl123_liPublication" data-pmid="21330288" data-citations="30" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl123_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl123_lblPublication">Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs. Bioinformatics. 2011 Apr 15; 27(8):1068-75.</span> <span id="ctl01_rpPublication_ctl123_lblPublicationIDs">Kinsella M, Harismendy O, Nakano M, <a href="https://profiles.ucsd.edu/kelly.frazer">Frazer KA</a>, <b>Bafna V</b>. PMID: 21330288; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3072550' target='_blank'>PMC3072550</a>.</span> </div> <div id="ctl01_rpPublication_ctl123_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/21330288 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21330288/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">30</span></a><span id='spnHideOnNoAltmetric21330288'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='21330288'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl124_liPublication" data-pmid="21342554" data-citations="12" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl124_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl124_lblPublication">Strobe sequence design for haplotype assembly. BMC Bioinformatics. 2011 Feb 15; 12 Suppl 1:S24.</span> <span id="ctl01_rpPublication_ctl124_lblPublicationIDs">Lo C, Bashir A, <a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>, <b>Bafna V</b>. PMID: 21342554; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3044279' target='_blank'>PMC3044279</a>.</span> </div> <div id="ctl01_rpPublication_ctl124_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/21342554 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21342554/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">12</span></a><span id='spnHideOnNoAltmetric21342554'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='21342554'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl125_liPublication" data-pmid="21262834" data-citations="68" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl125_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl125_lblPublication">Experimental selection of hypoxia-tolerant Drosophila melanogaster. Proc Natl Acad Sci U S A. 2011 Feb 08; 108(6):2349-54.</span> <span id="ctl01_rpPublication_ctl125_lblPublicationIDs"><a href="https://profiles.ucsd.edu/dan.zhou">Zhou D</a>, Udpa N, Gersten M, Visk DW, Bashir A, <a href="https://profiles.ucsd.edu/jin.xue">Xue J</a>, <a href="https://profiles.ucsd.edu/kelly.frazer">Frazer KA</a>, <a href="https://profiles.ucsd.edu/james.posakony">Posakony JW</a>, <a href="https://profiles.ucsd.edu/shankar.subramaniam">Subramaniam S</a>, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/gabriel.haddad">Haddad GG</a>. PMID: 21262834; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3038716' target='_blank'>PMC3038716</a>.</span> </div> <div id="ctl01_rpPublication_ctl125_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/21262834 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21262834/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">68</span></a><span id='spnHideOnNoAltmetric21262834'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='21262834'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl126_liPublication" data-pmid="21268269" data-citations="18" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl126_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl126_lblPublication">Resurrection of a clinical antibody: template proteogenomic de novo proteomic sequencing and reverse engineering of an anti-lymphotoxin-α antibody. Proteomics. 2011 Feb; 11(3):395-405.</span> <span id="ctl01_rpPublication_ctl126_lblPublicationIDs">Castellana NE, McCutcheon K, Pham VC, Harden K, Nguyen A, Young J, Adams C, Schroeder K, Arnott D, <b>Bafna V</b>, Grogan JL, Lill JR. PMID: 21268269; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3253889' target='_blank'>PMC3253889</a>.</span> </div> <div id="ctl01_rpPublication_ctl126_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/21268269 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21268269/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">18</span></a><span id='spnHideOnNoAltmetric21268269'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='21268269'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl127_liPublication" data-pmid="21067235" data-citations="7" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl127_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl127_lblPublication">Practical 4'-phosphopantetheine active site discovery from proteomic samples. J Proteome Res. 2011 Jan 07; 10(1):320-9.</span> <span id="ctl01_rpPublication_ctl127_lblPublicationIDs">Meier JL, Patel AD, Niessen S, Meehan M, Kersten R, Yang JY, Rothmann M, Cravatt BF, <a href="https://profiles.ucsd.edu/pieter.dorrestein">Dorrestein PC</a>, <a href="https://profiles.ucsd.edu/michael.burkart">Burkart MD</a>, <b>Bafna V</b>. PMID: 21067235; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3042426' target='_blank'>PMC3042426</a>.</span> </div> <div id="ctl01_rpPublication_ctl127_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/21067235 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21067235/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">7</span></a><span id='spnHideOnNoAltmetric21067235'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='21067235'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl128_liPublication" data-pmid="21118518" data-citations="21" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl128_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl128_lblPublication">Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level. Genome Biol. 2010; 11(11):R118.</span> <span id="ctl01_rpPublication_ctl128_lblPublicationIDs">Harismendy O, <a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>, Bhatia G, Nakano M, Scott M, Wang X, Dib C, Turlotte E, Sipe JC, <a href="https://profiles.ucsd.edu/sarah.murray">Murray SS</a>, Deleuze JF, <b>Bafna V</b>, Topol EJ, <a href="https://profiles.ucsd.edu/kelly.frazer">Frazer KA</a>. PMID: 21118518; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3156957' target='_blank'>PMC3156957</a>.</span> </div> <div id="ctl01_rpPublication_ctl128_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/21118518 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21118518/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">21</span></a><span id='spnHideOnNoAltmetric21118518'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='21118518'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl129_liPublication" data-pmid="20976246" data-citations="57" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl129_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl129_lblPublication">A covering method for detecting genetic associations between rare variants and common phenotypes. PLoS Comput Biol. 2010 Oct 14; 6(10):e1000954.</span> <span id="ctl01_rpPublication_ctl129_lblPublicationIDs">Bhatia G, <a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>, Harismendy O, <a href="https://profiles.ucsd.edu/nicholas.schork">Schork NJ</a>, Topol EJ, <a href="https://profiles.ucsd.edu/kelly.frazer">Frazer K</a>, <b>Bafna V</b>. PMID: 20976246; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2954823' target='_blank'>PMC2954823</a>.</span> </div> <div id="ctl01_rpPublication_ctl129_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/20976246 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20976246/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">57</span></a><span id='spnHideOnNoAltmetric20976246'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='20976246'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl130_liPublication" data-pmid="20871107" data-citations="13" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl130_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl130_lblPublication">RAPID detection of gene-gene interactions in genome-wide association studies. Bioinformatics. 2010 Nov 15; 26(22):2856-62.</span> <span id="ctl01_rpPublication_ctl130_lblPublicationIDs">Brinza D, Schultz M, <a href="https://profiles.ucsd.edu/glenn.tesler">Tesler G</a>, <b>Bafna V</b>. PMID: 20871107; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3493125' target='_blank'>PMC3493125</a>.</span> </div> <div id="ctl01_rpPublication_ctl130_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/20871107 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20871107/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">13</span></a><span id='spnHideOnNoAltmetric20871107'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='20871107'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl131_liPublication" data-FieldBF7C30="1" data-citations="83" data-Field30AEBF="1" data-pmid="20855543" data-FieldBFB330="1" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl131_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl131_lblPublication">Deconvolution and database search of complex tandem mass spectra of intact proteins: a combinatorial approach. Mol Cell Proteomics. 2010 Dec; 9(12):2772-82.</span> <span id="ctl01_rpPublication_ctl131_lblPublicationIDs">Liu X, Inbar Y, <a href="https://profiles.ucsd.edu/pieter.dorrestein">Dorrestein PC</a>, Wynne C, Edwards N, Souda P, Whitelegge JP, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner PA</a>. PMID: 20855543; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3101958' target='_blank'>PMC3101958</a>.</span> </div> <div id="ctl01_rpPublication_ctl131_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/20855543 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20855543/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">83</span></a><span id='spnHideOnNoAltmetric20855543'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='20855543'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a><a class='publication-filter' style='border:1px solid #BFB330;' data-color="#BFB330" OnClick="toggleFilter('data-FieldBFB330')">Cel<span class='tooltiptext' style='background-color:#BFB330;'> Cell Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl132_liPublication" data-pmid="20620248" data-citations="62" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl132_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl132_lblPublication">Proteogenomics to discover the full coding content of genomes: a computational perspective. J Proteomics. 2010 Oct 10; 73(11):2124-35.</span> <span id="ctl01_rpPublication_ctl132_lblPublicationIDs">Castellana N, <b>Bafna V</b>. PMID: 20620248; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2949459' target='_blank'>PMC2949459</a>.</span> </div> <div id="ctl01_rpPublication_ctl132_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/20620248 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20620248/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">62</span></a><span id='spnHideOnNoAltmetric20620248'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='20620248'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl133_liPublication" data-pmid="20579359" data-citations="26" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl133_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl133_lblPublication">Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes. BMC Genomics. 2010 Jun 25; 11:407.</span> <span id="ctl01_rpPublication_ctl133_lblPublicationIDs"><a href="https://profiles.ucsd.edu/eduardo.macagno">Macagno ER</a>, Gaasterland T, Edsall L, <b>Bafna V</b>, Soares MB, Scheetz T, Casavant T, Da Silva C, Wincker P, Tasiemski A, Salzet M. PMID: 20579359; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2996935' target='_blank'>PMC2996935</a>.</span> </div> <div id="ctl01_rpPublication_ctl133_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/20579359 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20579359/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">26</span></a><span id='spnHideOnNoAltmetric20579359'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='20579359'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl134_liPublication" data-pmid="20565853" data-citations="12" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl134_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl134_lblPublication">Designing deep sequencing experiments: detecting structural variation and estimating transcript abundance. BMC Genomics. 2010 Jun 18; 11:385.</span> <span id="ctl01_rpPublication_ctl134_lblPublicationIDs">Bashir A, <a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>, <b>Bafna V</b>. PMID: 20565853; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3091630' target='_blank'>PMC3091630</a>.</span> </div> <div id="ctl01_rpPublication_ctl134_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/20565853 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20565853/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">12</span></a><span id='spnHideOnNoAltmetric20565853'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='20565853'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl135_liPublication" data-citations="10" data-Field30AEBF="1" data-pmid="20500021" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl135_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl135_lblPublication">Protein-protein interaction network evaluation for identifying potential drug targets. J Comput Biol. 2010 May; 17(5):669-84.</span> <span id="ctl01_rpPublication_ctl135_lblPublicationIDs"><a href="https://profiles.ucdavis.edu/fereydoun.hormozdiari">Hormozdiari F</a>, Salari R, <b>Bafna V</b>, Sahinalp SC. PMID: 20500021.</span> </div> <div id="ctl01_rpPublication_ctl135_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/20500021 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20500021/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">10</span></a><span id='spnHideOnNoAltmetric20500021'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='20500021'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl136_liPublication" data-citations="4" data-Field30AEBF="1" data-pmid="20377451" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl136_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl136_lblPublication">Optimizing PCR assays for DNA-based cancer diagnostics. J Comput Biol. 2010 Mar; 17(3):369-81.</span> <span id="ctl01_rpPublication_ctl136_lblPublicationIDs">Bashir A, Lu Q, Carson D, Raphael BJ, Liu YT, <b>Bafna V</b>. PMID: 20377451; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC3213025' target='_blank'>PMC3213025</a>.</span> </div> <div id="ctl01_rpPublication_ctl136_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/20377451 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20377451/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">4</span></a><span id='spnHideOnNoAltmetric20377451'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='20377451'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl137_liPublication" data-FieldBF7C30="1" data-citations="20" data-Field30AEBF="1" data-pmid="20164058" data-FieldBFB330="1" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl137_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl137_lblPublication">Template proteogenomics: sequencing whole proteins using an imperfect database. Mol Cell Proteomics. 2010 Jun; 9(6):1260-70.</span> <span id="ctl01_rpPublication_ctl137_lblPublicationIDs">Castellana NE, Pham V, Arnott D, Lill JR, <b>Bafna V</b>. PMID: 20164058; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2877985' target='_blank'>PMC2877985</a>.</span> </div> <div id="ctl01_rpPublication_ctl137_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/20164058 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20164058/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">20</span></a><span id='spnHideOnNoAltmetric20164058'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='20164058'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a><a class='publication-filter' style='border:1px solid #BFB330;' data-color="#BFB330" OnClick="toggleFilter('data-FieldBFB330')">Cel<span class='tooltiptext' style='background-color:#BFB330;'> Cell Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl138_liPublication" data-FieldBF7C30="1" data-citations="44" data-Field30AEBF="1" data-pmid="20094657" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl138_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl138_lblPublication">Expansion of the mycobacterial "PUPylome". Mol Biosyst. 2010 Feb; 6(2):376-85.</span> <span id="ctl01_rpPublication_ctl138_lblPublicationIDs">Watrous J, Burns K, Liu WT, Patel A, Hook V, <b>Bafna V</b>, Barry CE, Bark S, <a href="https://profiles.ucsd.edu/pieter.dorrestein">Dorrestein PC</a>. PMID: 20094657; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2846642' target='_blank'>PMC2846642</a>.</span> </div> <div id="ctl01_rpPublication_ctl138_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/20094657 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20094657/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">44</span></a><span id='spnHideOnNoAltmetric20094657'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='20094657'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl139_liPublication" data-citations="30" data-Field30AEBF="1" data-pmid="19624266" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl139_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl139_lblPublication">Fast and accurate alignment of multiple protein networks. J Comput Biol. 2009 Aug; 16(8):989-99.</span> <span id="ctl01_rpPublication_ctl139_lblPublicationIDs">Kalaev M, <b>Bafna V</b>, Sharan R. PMID: 19624266.</span> </div> <div id="ctl01_rpPublication_ctl139_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/19624266 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/19624266/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">30</span></a><span id='spnHideOnNoAltmetric19624266'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='19624266'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl140_liPublication" data-pmid="19546169" data-citations="252" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl140_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl140_lblPublication">Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding. Genome Res. 2009 Sep; 19(9):1527-41.</span> <span id="ctl01_rpPublication_ctl140_lblPublicationIDs">McKernan KJ, Peckham HE, Costa GL, McLaughlin SF, Fu Y, Tsung EF, Clouser CR, Duncan C, Ichikawa JK, Lee CC, Zhang Z, Ranade SS, Dimalanta ET, Hyland FC, Sokolsky TD, Zhang L, Sheridan A, Fu H, Hendrickson CL, Li B, Kotler L, Stuart JR, Malek JA, Manning JM, Antipova AA, Perez DS, Moore MP, Hayashibara KC, Lyons MR, Beaudoin RE, Coleman BE, Laptewicz MW, Sannicandro AE, Rhodes MD, Gottimukkala RK, Yang S, <b>Bafna V</b>, Bashir A, MacBride A, Alkan C, Kidd JM, Eichler EE, Reese MG, De La Vega FM, Blanchard AP. PMID: 19546169; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2752135' target='_blank'>PMC2752135</a>.</span> </div> <div id="ctl01_rpPublication_ctl140_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/19546169 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/19546169/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">252</span></a><span id='spnHideOnNoAltmetric19546169'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='19546169'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl141_liPublication" data-pmid="19098097" data-citations="125" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl141_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl141_lblPublication">Discovery and revision of Arabidopsis genes by proteogenomics. Proc Natl Acad Sci U S A. 2008 Dec 30; 105(52):21034-8.</span> <span id="ctl01_rpPublication_ctl141_lblPublicationIDs">Castellana NE, Payne SH, <a href="https://profiles.ucsd.edu/zhouxin.shen">Shen Z</a>, Stanke M, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/steven.briggs">Briggs SP</a>. PMID: 19098097; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2605632' target='_blank'>PMC2605632</a>.</span> </div> <div id="ctl01_rpPublication_ctl141_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/19098097 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/19098097/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">125</span></a><span id='spnHideOnNoAltmetric19098097'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='19098097'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl142_liPublication" data-citations="31" data-Field30AEBF="1" data-pmid="18707533" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="1" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl142_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl142_lblPublication">QNet: a tool for querying protein interaction networks. J Comput Biol. 2008 Sep; 15(7):913-25.</span> <span id="ctl01_rpPublication_ctl142_lblPublicationIDs">Dost B, Shlomi T, Gupta N, Ruppin E, <b>Bafna V</b>, Sharan R. PMID: 18707533.</span> </div> <div id="ctl01_rpPublication_ctl142_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/18707533 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18707533/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">31</span></a><span id='spnHideOnNoAltmetric18707533'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='18707533'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl143_liPublication" data-pmid="18689818" data-citations="115" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl143_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl143_lblPublication">HapCUT: an efficient and accurate algorithm for the haplotype assembly problem. Bioinformatics. 2008 Aug 15; 24(16):i153-9.</span> <span id="ctl01_rpPublication_ctl143_lblPublicationIDs"><a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>, <b>Bafna V</b>. PMID: 18689818.</span> </div> <div id="ctl01_rpPublication_ctl143_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/18689818 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18689818/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">115</span></a><span id='spnHideOnNoAltmetric18689818'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='18689818'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl144_liPublication" data-pmid="18676820" data-citations="57" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl144_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl144_lblPublication">An MCMC algorithm for haplotype assembly from whole-genome sequence data. Genome Res. 2008 Aug; 18(8):1336-46.</span> <span id="ctl01_rpPublication_ctl144_lblPublicationIDs"><a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>, Halpern AL, Axelrod N, <b>Bafna V</b>. PMID: 18676820; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2493424' target='_blank'>PMC2493424</a>.</span> </div> <div id="ctl01_rpPublication_ctl144_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/18676820 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18676820/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">57</span></a><span id='spnHideOnNoAltmetric18676820'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='18676820'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl145_liPublication" data-pmid="18563926" data-citations="31" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl145_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl145_lblPublication">Phosphorylation-specific MS/MS scoring for rapid and accurate phosphoproteome analysis. J Proteome Res. 2008 Aug; 7(8):3373-81.</span> <span id="ctl01_rpPublication_ctl145_lblPublicationIDs">Payne SH, Yau M, Smolka MB, Tanner S, <a href="https://profiles.ucsd.edu/huilin.zhou">Zhou H</a>, <b>Bafna V</b>. PMID: 18563926; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2566938' target='_blank'>PMC2566938</a>.</span> </div> <div id="ctl01_rpPublication_ctl145_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/18563926 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18563926/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">31</span></a><span id='spnHideOnNoAltmetric18563926'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='18563926'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl146_liPublication" data-citations="5" data-Field30AEBF="1" data-pmid="18549303" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl146_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl146_lblPublication">Structural alignment of pseudoknotted RNA. J Comput Biol. 2008 Jun; 15(5):489-504.</span> <span id="ctl01_rpPublication_ctl146_lblPublicationIDs">Han B, Dost B, <b>Bafna V</b>, Zhang S. PMID: 18549303.</span> </div> <div id="ctl01_rpPublication_ctl146_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/18549303 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18549303/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">5</span></a><span id='spnHideOnNoAltmetric18549303'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='18549303'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl147_liPublication" data-pmid="18404202" data-citations="40" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl147_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl147_lblPublication">Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer. PLoS Comput Biol. 2008 Apr 25; 4(4):e1000051.</span> <span id="ctl01_rpPublication_ctl147_lblPublicationIDs">Bashir A, Volik S, Collins C, <b>Bafna V</b>, Raphael BJ. PMID: 18404202; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2278375' target='_blank'>PMC2278375</a>.</span> </div> <div id="ctl01_rpPublication_ctl147_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/18404202 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18404202/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">40</span></a><span id='spnHideOnNoAltmetric18404202'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='18404202'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl148_liPublication" data-pmid="18426904" data-citations="46" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl148_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl148_lblPublication">Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes. Genome Res. 2008 Jul; 18(7):1133-42.</span> <span id="ctl01_rpPublication_ctl148_lblPublicationIDs">Gupta N, Benhamida J, Bhargava V, Goodman D, Kain E, Kerman I, Nguyen N, Ollikainen N, Rodriguez J, Wang J, Lipton MS, Romine M, <b>Bafna V</b>, Smith RD, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner PA</a>. PMID: 18426904; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2493402' target='_blank'>PMC2493402</a>.</span> </div> <div id="ctl01_rpPublication_ctl148_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/18426904 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18426904/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">46</span></a><span id='spnHideOnNoAltmetric18426904'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='18426904'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl149_liPublication" data-FieldBF7C30="1" data-citations="288" data-Field30AEBF="1" data-pmid="18407956" data-FieldBFB330="1" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl149_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl149_lblPublication">A multidimensional chromatography technology for in-depth phosphoproteome analysis. Mol Cell Proteomics. 2008 Jul; 7(7):1389-96.</span> <span id="ctl01_rpPublication_ctl149_lblPublicationIDs">Albuquerque CP, Smolka MB, Payne SH, <b>Bafna V</b>, Eng J, <a href="https://profiles.ucsd.edu/huilin.zhou">Zhou H</a>. PMID: 18407956; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2493382' target='_blank'>PMC2493382</a>.</span> </div> <div id="ctl01_rpPublication_ctl149_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/18407956 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18407956/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">288</span></a><span id='spnHideOnNoAltmetric18407956'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='18407956'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a><a class='publication-filter' style='border:1px solid #BFB330;' data-color="#BFB330" OnClick="toggleFilter('data-FieldBFB330')">Cel<span class='tooltiptext' style='background-color:#BFB330;'> Cell Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl150_liPublication" data-citations="19" data-Field30AEBF="1" data-pmid="18047426" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl150_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl150_lblPublication">A decomposition theory for phylogenetic networks and incompatible characters. J Comput Biol. 2007 Dec; 14(10):1247-72.</span> <span id="ctl01_rpPublication_ctl150_lblPublicationIDs">Gusfield D, Bansal V, <b>Bafna V</b>, Song YS. PMID: 18047426; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2581772' target='_blank'>PMC2581772</a>.</span> </div> <div id="ctl01_rpPublication_ctl150_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/18047426 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18047426/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">19</span></a><span id='spnHideOnNoAltmetric18047426'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='18047426'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl151_liPublication" data-pmid="18034453" data-citations="21" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl151_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl151_lblPublication">Accurate annotation of peptide modifications through unrestrictive database search. J Proteome Res. 2008 Jan; 7(1):170-81.</span> <span id="ctl01_rpPublication_ctl151_lblPublicationIDs">Tanner S, Payne SH, Dasari S, <a href="https://profiles.ucsd.edu/zhouxin.shen">Shen Z</a>, Wilmarth PA, David LL, Loomis WF, <a href="https://profiles.ucsd.edu/steven.briggs">Briggs SP</a>, <b>Bafna V</b>. PMID: 18034453.</span> </div> <div id="ctl01_rpPublication_ctl151_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/18034453 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18034453/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">21</span></a><span id='spnHideOnNoAltmetric18034453'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='18034453'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl152_liPublication" data-pmid="17803354" data-citations="750" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF8230="1"> <div> <span id="ctl01_rpPublication_ctl152_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl152_lblPublication">The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 04; 5(10):e254.</span> <span id="ctl01_rpPublication_ctl152_lblPublicationIDs">Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, <b>Bafna V</b>, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC. PMID: 17803354; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC1964779' target='_blank'>PMC1964779</a>.</span> </div> <div id="ctl01_rpPublication_ctl152_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/17803354 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/17803354/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">750</span></a><span id='spnHideOnNoAltmetric17803354'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='17803354'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF8230;' data-color="#BF8230" OnClick="toggleFilter('data-FieldBF8230')">Bio<span class='tooltiptext' style='background-color:#BF8230;'> Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl153_liPublication" data-pmid="17766270" data-citations="7" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl153_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl153_lblPublication">Optimization of primer design for the detection of variable genomic lesions in cancer. Bioinformatics. 2007 Nov 01; 23(21):2807-15.</span> <span id="ctl01_rpPublication_ctl153_lblPublicationIDs">Bashir A, Liu YT, Raphael BJ, Carson D, <b>Bafna V</b>. PMID: 17766270.</span> </div> <div id="ctl01_rpPublication_ctl153_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/17766270 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/17766270/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">7</span></a><span id='spnHideOnNoAltmetric17766270'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='17766270'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl154_liPublication" data-pmid="17690205" data-citations="89" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl154_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl154_lblPublication">Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation. Genome Res. 2007 Sep; 17(9):1362-77.</span> <span id="ctl01_rpPublication_ctl154_lblPublicationIDs">Gupta N, Tanner S, Jaitly N, Adkins JN, Lipton M, Edwards R, Romine M, Osterman A, <b>Bafna V</b>, Smith RD, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner PA</a>. PMID: 17690205; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC1950905' target='_blank'>PMC1950905</a>.</span> </div> <div id="ctl01_rpPublication_ctl154_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/17690205 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/17690205/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">89</span></a><span id='spnHideOnNoAltmetric17690205'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='17690205'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl155_liPublication" data-citations="4" data-Field30AEBF="1" data-pmid="17437030" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl155_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl155_lblPublication">Integrating scientific cultures. Mol Syst Biol. 2007; 3:105.</span> <span id="ctl01_rpPublication_ctl155_lblPublicationIDs">Ideker T, <b>Bafna V</b>, Lemberger T. PMID: 17437030; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC1865587' target='_blank'>PMC1865587</a>.</span> </div> <div id="ctl01_rpPublication_ctl155_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/17437030 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/17437030/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">4</span></a><span id='spnHideOnNoAltmetric17437030'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='17437030'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl156_liPublication" data-pmid="17355171" data-citations="325" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="1" data-TranslationClinicalTrial="0" data-FieldBF8230="1"> <div> <span id="ctl01_rpPublication_ctl156_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl156_lblPublication">The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol. 2007 Mar; 5(3):e16.</span> <span id="ctl01_rpPublication_ctl156_lblPublicationIDs">Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, <a href="https://profiles.ucdavis.edu/jonathan.eisen">Eisen JA</a>, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, Joachimiak MP, van Belle C, Chandonia JM, Soergel DA, Zhai Y, Natarajan K, Lee S, Raphael BJ, <b>Bafna V</b>, Friedman R, Brenner SE, Godzik A, <a href="https://profiles.ucla.edu/david.eisenberg">Eisenberg D</a>, <a href="https://profiles.ucsd.edu/jack.dixon">Dixon JE</a>, <a href="https://profiles.ucsd.edu/susan.taylor">Taylor SS</a>, Strausberg RL, Frazier M, Venter JC. PMID: 17355171; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC1821046' target='_blank'>PMC1821046</a>.</span> </div> <div id="ctl01_rpPublication_ctl156_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/17355171 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/17355171/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">325</span></a><span id='spnHideOnNoAltmetric17355171'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='17355171'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF8230;' data-color="#BF8230" OnClick="toggleFilter('data-FieldBF8230')">Bio<span class='tooltiptext' style='background-color:#BF8230;'> Biology</span></a></div>   Translation:<a class='publication-filter publication-public-health' data-color='#609' OnClick="toggleFilter('data-TranslationPublicHealth')">PH<span class='tooltiptext' style='background-color:#609;'>Public Health</span></a> </div> </li> <li id="ctl01_rpPublication_ctl157_liPublication" data-pmid="17189379" data-citations="86" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl157_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl157_lblPublication">Improving gene annotation using peptide mass spectrometry. Genome Res. 2007 Feb; 17(2):231-9.</span> <span id="ctl01_rpPublication_ctl157_lblPublicationIDs">Tanner S, <a href="https://profiles.ucsd.edu/zhouxin.shen">Shen Z</a>, Ng J, Florea L, Guigó R, <a href="https://profiles.ucsd.edu/steven.briggs">Briggs SP</a>, <b>Bafna V</b>. PMID: 17189379; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC1781355' target='_blank'>PMC1781355</a>.</span> </div> <div id="ctl01_rpPublication_ctl157_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/17189379 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/17189379/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">86</span></a><span id='spnHideOnNoAltmetric17189379'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='17189379'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl158_liPublication" data-pmid="17185644" data-citations="38" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl158_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl158_lblPublication">Evidence for large inversion polymorphisms in the human genome from HapMap data. Genome Res. 2007 Feb; 17(2):219-30.</span> <span id="ctl01_rpPublication_ctl158_lblPublicationIDs"><a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>, Bashir A, <b>Bafna V</b>. PMID: 17185644; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC1781354' target='_blank'>PMC1781354</a>.</span> </div> <div id="ctl01_rpPublication_ctl158_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/17185644 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/17185644/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">38</span></a><span id='spnHideOnNoAltmetric17185644'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='17185644'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl159_liPublication" data-pmid="17022627" data-citations="147" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl159_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl159_lblPublication">Age-related changes in human crystallins determined from comparative analysis of post-translational modifications in young and aged lens: does deamidation contribute to crystallin insolubility? J Proteome Res. 2006 Oct; 5(10):2554-66.</span> <span id="ctl01_rpPublication_ctl159_lblPublicationIDs">Wilmarth PA, Tanner S, Dasari S, Nagalla SR, Riviere MA, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner PA</a>, David LL. PMID: 17022627; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC2536618' target='_blank'>PMC2536618</a>.</span> </div> <div id="ctl01_rpPublication_ctl159_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/17022627 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/17022627/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">147</span></a><span id='spnHideOnNoAltmetric17022627'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='17022627'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl160_liPublication" data-pmid="16873520" data-citations="10" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl160_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl160_lblPublication">A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements. Bioinformatics. 2006 Jul 15; 22(14):e557-65.</span> <span id="ctl01_rpPublication_ctl160_lblPublicationIDs">Zhang S, Borovok I, Aharonowitz Y, Sharan R, <b>Bafna V</b>. PMID: 16873520.</span> </div> <div id="ctl01_rpPublication_ctl160_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/16873520 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/16873520/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">10</span></a><span id='spnHideOnNoAltmetric16873520'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='16873520'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl161_liPublication" data-citations="12" data-Field30AEBF="1" data-pmid="16597240" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl161_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl161_lblPublication">Consensus folding of unaligned RNA sequences revisited. J Comput Biol. 2006 Mar; 13(2):283-95.</span> <span id="ctl01_rpPublication_ctl161_lblPublicationIDs"><b>Bafna V</b>, Tang H, Zhang S. PMID: 16597240.</span> </div> <div id="ctl01_rpPublication_ctl161_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/16597240 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/16597240/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">12</span></a><span id='spnHideOnNoAltmetric16597240'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='16597240'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl162_liPublication" data-citations="3" data-Field30AEBF="1" data-pmid="16597254" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl162_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl162_lblPublication">Inference about recombination from haplotype data: lower bounds and recombination hotspots. J Comput Biol. 2006 Mar; 13(2):501-21.</span> <span id="ctl01_rpPublication_ctl162_lblPublicationIDs"><b>Bafna V</b>, <a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>. PMID: 16597254.</span> </div> <div id="ctl01_rpPublication_ctl162_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/16597254 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/16597254/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">3</span></a><span id='spnHideOnNoAltmetric16597254'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='16597254'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl163_liPublication" data-FieldBE30BF="1" data-FieldA9BF30="1" data-citations="15" data-pmid="17406213" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl163_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl163_lblPublication">Unrestrictive identification of post-translational modifications through peptide mass spectrometry. Nat Protoc. 2006; 1(1):67-72.</span> <span id="ctl01_rpPublication_ctl163_lblPublicationIDs">Tanner S, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner PA</a>, <b>Bafna V</b>. PMID: 17406213.</span> </div> <div id="ctl01_rpPublication_ctl163_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/17406213 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/17406213/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">15</span></a><span id='spnHideOnNoAltmetric17406213'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='17406213'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #A9BF30;' data-color="#A9BF30" OnClick="toggleFilter('data-FieldA9BF30')">Cli<span class='tooltiptext' style='background-color:#A9BF30;'> Clinical Laboratory Techniques</span></a><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl164_liPublication" data-pmid="16311586" data-citations="91" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF9730="1"> <div> <span id="ctl01_rpPublication_ctl164_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl164_lblPublication">Identification of post-translational modifications by blind search of mass spectra. Nat Biotechnol. 2005 Dec; 23(12):1562-7.</span> <span id="ctl01_rpPublication_ctl164_lblPublicationIDs">Tsur D, Tanner S, <a href="https://profiles.sc-ctsi.org/ebrahim.zandi">Zandi E</a>, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner PA</a>. PMID: 16311586.</span> </div> <div id="ctl01_rpPublication_ctl164_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/16311586 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/16311586/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">91</span></a><span id='spnHideOnNoAltmetric16311586'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='16311586'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF9730;' data-color="#BF9730" OnClick="toggleFilter('data-FieldBF9730')">Bio<span class='tooltiptext' style='background-color:#BF9730;'> Biotechnology</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl165_liPublication" data-pmid="17044173" data-citations="17" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl165_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl165_lblPublication">Searching genomes for noncoding RNA using FastR. IEEE/ACM Trans Comput Biol Bioinform. 2005 Oct-Dec; 2(4):366-79.</span> <span id="ctl01_rpPublication_ctl165_lblPublicationIDs">Zhang S, Haas B, <a href="https://profiles.ucla.edu/eleazar.eskin">Eskin E</a>, <b>Bafna V</b>. PMID: 17044173.</span> </div> <div id="ctl01_rpPublication_ctl165_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/17044173 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/17044173/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">17</span></a><span id='spnHideOnNoAltmetric17044173'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='17044173'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl166_liPublication" data-pmid="16013882" data-citations="247" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBEBF30="1"> <div> <span id="ctl01_rpPublication_ctl166_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl166_lblPublication">InsPecT: identification of posttranslationally modified peptides from tandem mass spectra. Anal Chem. 2005 Jul 15; 77(14):4626-39.</span> <span id="ctl01_rpPublication_ctl166_lblPublicationIDs">Tanner S, Shu H, Frank A, Wang LC, <a href="https://profiles.sc-ctsi.org/ebrahim.zandi">Zandi E</a>, Mumby M, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner PA</a>, <b>Bafna V</b>. PMID: 16013882.</span> </div> <div id="ctl01_rpPublication_ctl166_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/16013882 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/16013882/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">247</span></a><span id='spnHideOnNoAltmetric16013882'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='16013882'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BEBF30;' data-color="#BEBF30" OnClick="toggleFilter('data-FieldBEBF30')">Che<span class='tooltiptext' style='background-color:#BEBF30;'> Chemistry Techniques</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl167_liPublication" data-pmid="16083278" data-citations="45" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBF7C30="1"> <div> <span id="ctl01_rpPublication_ctl167_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl167_lblPublication">Peptide sequence tags for fast database search in mass-spectrometry. J Proteome Res. 2005 Jul-Aug; 4(4):1287-95.</span> <span id="ctl01_rpPublication_ctl167_lblPublicationIDs">Frank A, Tanner S, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner P</a>. PMID: 16083278.</span> </div> <div id="ctl01_rpPublication_ctl167_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/16083278 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/16083278/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">45</span></a><span id='spnHideOnNoAltmetric16083278'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='16083278'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF7C30;' data-color="#BF7C30" OnClick="toggleFilter('data-FieldBF7C30')">Bio<span class='tooltiptext' style='background-color:#BF7C30;'> Biochemistry</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl168_liPublication" data-pmid="15998912" data-citations="15" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl168_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl168_lblPublication">Orthologous repeats and mammalian phylogenetic inference. Genome Res. 2005 Jul; 15(7):998-1006.</span> <span id="ctl01_rpPublication_ctl168_lblPublicationIDs">Bashir A, <a href="https://profiles.ucsf.edu/jimmie.ye">Ye C</a>, Price AL, <b>Bafna V</b>. PMID: 15998912; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC1172044' target='_blank'>PMC1172044</a>.</span> </div> <div id="ctl01_rpPublication_ctl168_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/15998912 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/15998912/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">15</span></a><span id='spnHideOnNoAltmetric15998912'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='15998912'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl169_liPublication" data-pmid="16447973" data-citations="9" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BFAE="1"> <div> <span id="ctl01_rpPublication_ctl169_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl169_lblPublication">Identification of post-translational modifications via blind search of mass-spectra. Proc IEEE Comput Syst Bioinform Conf. 2005; 157-66.</span> <span id="ctl01_rpPublication_ctl169_lblPublicationIDs">Tsur D, Tanner S, <a href="https://profiles.sc-ctsi.org/ebrahim.zandi">Zandi E</a>, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner PA</a>. PMID: 16447973.</span> </div> <div id="ctl01_rpPublication_ctl169_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/16447973 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/16447973/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">9</span></a><span id='spnHideOnNoAltmetric16447973'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='16447973'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BFAE;' data-color="#30BFAE" OnClick="toggleFilter('data-Field30BFAE')">Med<span class='tooltiptext' style='background-color:#30BFAE;'> Medical Informatics</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl170_liPublication" data-pmid="15595863" data-citations="16" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBEBF30="1"> <div> <span id="ctl01_rpPublication_ctl170_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl170_lblPublication">Shotgun protein sequencing by tandem mass spectra assembly. Anal Chem. 2004 Dec 15; 76(24):7221-33.</span> <span id="ctl01_rpPublication_ctl170_lblPublicationIDs"><a href="https://profiles.ucsd.edu/nuno.bandeira">Bandeira N</a>, Tang H, <b>Bafna V</b>, <a href="https://profiles.ucsd.edu/pavel.pevzner">Pevzner P</a>. PMID: 15595863.</span> </div> <div id="ctl01_rpPublication_ctl170_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/15595863 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/15595863/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">16</span></a><span id='spnHideOnNoAltmetric15595863'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='15595863'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BEBF30;' data-color="#BEBF30" OnClick="toggleFilter('data-FieldBEBF30')">Che<span class='tooltiptext' style='background-color:#BEBF30;'> Chemistry Techniques</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl171_liPublication" data-pmid="15289481" data-citations="24" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BF47="1"> <div> <span id="ctl01_rpPublication_ctl171_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl171_lblPublication">Optimal haplotype block-free selection of tagging SNPs for genome-wide association studies. Genome Res. 2004 Aug; 14(8):1633-40.</span> <span id="ctl01_rpPublication_ctl171_lblPublicationIDs">Halldórsson BV, <b>Bafna V</b>, Lippert R, Schwartz R, De La Vega FM, Clark AG, Istrail S. PMID: 15289481; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC509273' target='_blank'>PMC509273</a>.</span> </div> <div id="ctl01_rpPublication_ctl171_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/15289481 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/15289481/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">24</span></a><span id='spnHideOnNoAltmetric15289481'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='15289481'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BF47;' data-color="#30BF47" OnClick="toggleFilter('data-Field30BF47')">Gen<span class='tooltiptext' style='background-color:#30BF47;'> Genetics</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl172_liPublication" data-pmid="17048383" data-citations="4" data-TranslationHumans="0" data-TranslationAnimals="1" data-TranslationCells="0" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl172_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl172_lblPublication">The number of recombination events in a sample history: conflict graph and lower bounds. IEEE/ACM Trans Comput Biol Bioinform. 2004 Apr-Jun; 1(2):78-90.</span> <span id="ctl01_rpPublication_ctl172_lblPublicationIDs"><b>Bafna V</b>, <a href="https://profiles.ucsd.edu/vikas.bansal">Bansal V</a>. PMID: 17048383.</span> </div> <div id="ctl01_rpPublication_ctl172_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/17048383 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/17048383/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">4</span></a><span id='spnHideOnNoAltmetric17048383'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='17048383'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a> </div> </li> <li id="ctl01_rpPublication_ctl173_liPublication" data-citations="3" data-Field30AEBF="1" data-pmid="15700406" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl173_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl173_lblPublication">A note on efficient computation of haplotypes via perfect phylogeny. J Comput Biol. 2004; 11(5):858-66.</span> <span id="ctl01_rpPublication_ctl173_lblPublicationIDs"><b>Bafna V</b>, Gusfield D, Hannenhalli S, Yooseph S. PMID: 15700406.</span> </div> <div id="ctl01_rpPublication_ctl173_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/15700406 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/15700406/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">3</span></a><span id='spnHideOnNoAltmetric15700406'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='15700406'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl174_liPublication" data-pmid="16447999" data-citations="11" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BFAE="1"> <div> <span id="ctl01_rpPublication_ctl174_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl174_lblPublication">FastR: fast database search tool for non-coding RNA. Proc IEEE Comput Syst Bioinform Conf. 2004; 52-61.</span> <span id="ctl01_rpPublication_ctl174_lblPublicationIDs"><b>Bafna V</b>, Zhang S. PMID: 16447999.</span> </div> <div id="ctl01_rpPublication_ctl174_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/16447999 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/16447999/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">11</span></a><span id='spnHideOnNoAltmetric16447999'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='16447999'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BFAE;' data-color="#30BFAE" OnClick="toggleFilter('data-Field30BFAE')">Med<span class='tooltiptext' style='background-color:#30BFAE;'> Medical Informatics</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl175_liPublication" data-pmid="14512627" data-citations="164" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl175_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl175_lblPublication">The dog genome: survey sequencing and comparative analysis. Science. 2003 Sep 26; 301(5641):1898-903.</span> <span id="ctl01_rpPublication_ctl175_lblPublicationIDs">Kirkness EF, <b>Bafna V</b>, Halpern AL, Levy S, Remington K, Rusch DB, Delcher AL, Pop M, Wang W, Fraser CM, Venter JC. PMID: 14512627.</span> </div> <div id="ctl01_rpPublication_ctl175_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/14512627 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/14512627/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">164</span></a><span id='spnHideOnNoAltmetric14512627'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='14512627'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl176_liPublication" data-citations="13" data-Field30AEBF="1" data-pmid="12935331" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl176_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl176_lblPublication">Haplotyping as perfect phylogeny: a direct approach. J Comput Biol. 2003; 10(3-4):323-40.</span> <span id="ctl01_rpPublication_ctl176_lblPublicationIDs"><b>Bafna V</b>, Gusfield D, Lancia G, Yooseph S. PMID: 12935331.</span> </div> <div id="ctl01_rpPublication_ctl176_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/12935331 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/12935331/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">13</span></a><span id='spnHideOnNoAltmetric12935331'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='12935331'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl177_liPublication" data-citations="16" data-Field30AEBF="1" data-pmid="12676048" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl177_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl177_lblPublication">Robustness of inference of haplotype block structure. J Comput Biol. 2003; 10(1):13-9.</span> <span id="ctl01_rpPublication_ctl177_lblPublicationIDs">Schwartz R, Halldórsson BV, <b>Bafna V</b>, Clark AG, Istrail S. PMID: 12676048.</span> </div> <div id="ctl01_rpPublication_ctl177_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/12676048 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/12676048/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">16</span></a><span id='spnHideOnNoAltmetric12676048'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='12676048'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a> </div> </li> <li id="ctl01_rpPublication_ctl178_liPublication" data-pmid="11181995" data-citations="3181" data-TranslationHumans="1" data-TranslationAnimals="1" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-FieldBE30BF="1"> <div> <span id="ctl01_rpPublication_ctl178_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl178_lblPublication">The sequence of the human genome. Science. 2001 02 16; 291(5507):1304-51.</span> <span id="ctl01_rpPublication_ctl178_lblPublicationIDs">Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, <a href="https://profiles.sc-ctsi.org/paul.thomas">Thomas PD</a>, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigó R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, <a href="https://profiles.sc-ctsi.org/huaiyu.mi">Mi H</a>, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, <b>Bafna V</b>, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Deslattes Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, Zhu X. PMID: 11181995.</span> </div> <div id="ctl01_rpPublication_ctl178_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/11181995 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/11181995/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">3181</span></a><span id='spnHideOnNoAltmetric11181995'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='11181995'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BE30BF;' data-color="#BE30BF" OnClick="toggleFilter('data-FieldBE30BF')">Sci<span class='tooltiptext' style='background-color:#BE30BF;'> Science</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl179_liPublication" data-pmid="11472988" data-citations="38" data-TranslationHumans="0" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl179_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl179_lblPublication">SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database. Bioinformatics. 2001; 17 Suppl 1:S13-21.</span> <span id="ctl01_rpPublication_ctl179_lblPublicationIDs"><b>Bafna V</b>, Edwards N. PMID: 11472988.</span> </div> <div id="ctl01_rpPublication_ctl179_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/11472988 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/11472988/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">38</span></a><span id='spnHideOnNoAltmetric11472988'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='11472988'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl180_liPublication" data-citations="0" data-Field30AEBF="1" data-pmid="10890388" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="0" data-Field95BF30="1"> <div> <span id="ctl01_rpPublication_ctl180_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl180_lblPublication">Ligand-receptor pairing via tree comparison. J Comput Biol. 2000 Feb-Apr; 7(1-2):59-70.</span> <span id="ctl01_rpPublication_ctl180_lblPublicationIDs"><b>Bafna V</b>, Hannenhalli S, Rice K, Vawter L. PMID: 10890388.</span> </div> <div id="ctl01_rpPublication_ctl180_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/10890388 target='_blank'>PubMed</a><span id='spnHideOnNoAltmetric10890388'>   Mentions: <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='10890388'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #95BF30;' data-color="#95BF30" OnClick="toggleFilter('data-Field95BF30')">Com<span class='tooltiptext' style='background-color:#95BF30;'> Computational Biology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>    </div> </li> <li id="ctl01_rpPublication_ctl181_liPublication" data-FieldBF9730="1" data-citations="24" data-Field30AEBF="1" data-pmid="10977061" data-TranslationClinicalTrial="0" data-TranslationHumans="1" data-TranslationPublicHealth="0" data-TranslationAnimals="1" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl181_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl181_lblPublication">The conserved exon method for gene finding. Proc Int Conf Intell Syst Mol Biol. 2000; 8:3-12.</span> <span id="ctl01_rpPublication_ctl181_lblPublicationIDs"><b>Bafna V</b>, Huson DH. PMID: 10977061.</span> </div> <div id="ctl01_rpPublication_ctl181_divArticleMetrics" class="article-metrics"> View in: <a href=http://www.ncbi.nlm.nih.gov/pubmed/10977061 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/10977061/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">24</span></a><span id='spnHideOnNoAltmetric10977061'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='10977061'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF9730;' data-color="#BF9730" OnClick="toggleFilter('data-FieldBF9730')">Bio<span class='tooltiptext' style='background-color:#BF9730;'> Biotechnology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-animals' data-color='#33AA33' OnClick="toggleFilter('data-TranslationAnimals')">Animals</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl182_liPublication" data-pmid="9727055" data-citations="171" data-TranslationHumans="1" data-TranslationAnimals="0" data-TranslationCells="1" data-TranslationPublicHealth="0" data-TranslationClinicalTrial="0" data-Field30BFB5="1"> <div> <span id="ctl01_rpPublication_ctl182_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl182_lblPublication">Human beta-defensin 2 is a salt-sensitive peptide antibiotic expressed in human lung. J Clin Invest. 1998 Sep 01; 102(5):874-80.</span> <span id="ctl01_rpPublication_ctl182_lblPublicationIDs">Bals R, Wang X, Wu Z, Freeman T, <b>Bafna V</b>, Zasloff M, Wilson JM. PMID: 9727055; PMCID: <a href='//www.ncbi.nlm.nih.gov/pmc/articles/PMC508952' target='_blank'>PMC508952</a>.</span> </div> <div id="ctl01_rpPublication_ctl182_divArticleMetrics" class="article-metrics"> View in: <a href=https://www.ncbi.nlm.nih.gov/pubmed/9727055 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/9727055/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">171</span></a><span id='spnHideOnNoAltmetric9727055'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='9727055'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #30BFB5;' data-color="#30BFB5" OnClick="toggleFilter('data-Field30BFB5')">Med<span class='tooltiptext' style='background-color:#30BFB5;'> Medicine (General)</span></a></div>   Translation:<a class='publication-filter publication-humans' data-color='#3333CC' OnClick="toggleFilter('data-TranslationHumans')">Humans</a><a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> <li id="ctl01_rpPublication_ctl183_liPublication" data-FieldBF9730="1" data-citations="3" data-Field30AEBF="1" data-pmid="9783203" data-TranslationClinicalTrial="0" data-TranslationHumans="0" data-TranslationPublicHealth="0" data-TranslationAnimals="0" data-TranslationCells="1"> <div> <span id="ctl01_rpPublication_ctl183_lblPublicationAuthors"></span> <span id="ctl01_rpPublication_ctl183_lblPublication">The ribosome scanning model for translation initiation: implications for gene prediction and full-length cDNA detection. Proc Int Conf Intell Syst Mol Biol. 1998; 6:2-7.</span> <span id="ctl01_rpPublication_ctl183_lblPublicationIDs">Agarwal P, <b>Bafna V</b>. PMID: 9783203.</span> </div> <div id="ctl01_rpPublication_ctl183_divArticleMetrics" class="article-metrics"> View in: <a href=http://www.ncbi.nlm.nih.gov/pubmed/9783203 target='_blank'>PubMed</a>   Mentions: <a href='https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/9783203/citedby/' target='_blank' class="PMC-citations"><span class="PMC-citation-count">3</span></a><span id='spnHideOnNoAltmetric9783203'>  <span class='altmetric-embed' data-link-target='_blank' data-badge-popover='bottom' data-badge-type='4' data-hide-no-mentions='true' data-pmid='9783203'></span></span>   Fields: <div style='display:inline-flex'><a class='publication-filter' style='border:1px solid #BF9730;' data-color="#BF9730" OnClick="toggleFilter('data-FieldBF9730')">Bio<span class='tooltiptext' style='background-color:#BF9730;'> Biotechnology</span></a><a class='publication-filter' style='border:1px solid #30AEBF;' data-color="#30AEBF" OnClick="toggleFilter('data-Field30AEBF')">Mol<span class='tooltiptext' style='background-color:#30AEBF;'> Molecular Biology</span></a></div>   Translation:<a class='publication-filter publication-cells' data-color='#BB3333' OnClick="toggleFilter('data-TranslationCells')">Cells</a> </div> </li> </ol> </div> </div> <div id="divFiltered" style='display: none; margin-top: 6px;' class="publications"> <ol id="ulFiltered"> </ol> </div> <div id="divTimeline" style='display: none; margin-top: 6px;'> <div id="publicationTimelineGraph"> <div class="details-text" style="margin-bottom: 10px;"> This graph shows the total number of publications by year. To see the data as text, <a id="divShowTimelineTable" tabindex="0">click here</a>. </div> <img src="//chart.googleapis.com/chart?chs=595x100&chf=bg,s,ffffff|c,s,ffffff&chxt=x,y&chxl=0:||'96||'98||'00||'02||'04||'06||'08||'10||'12||'14||'16||'18||'20||'22||'24||1:|0|14&cht=bvs&chd=t:0,0,0,14,0,14,14,0,21,36,43,50,50,64,21,79,86,43,93,50,43,43,43,43,57,43,64,100,86,93,14&chdl=Publications&chco=80B1D3&chbh=10" id="ctl01_timelineBar" border="0" alt="Bar chart showing 183 publications over 26 distinct years, with a maximum of 14 publications in 2022" /> </div> <div id="divTimelineTable" class="listTable" style="display: none; margin-top: 12px; margin-bottom: 8px;"> <div class="details-text" style="margin-bottom: 10px;"> This graph shows the total number of publications by year. To return to the graph, <a id="dirReturnToTimeline" tabindex="0">click here</a>. </div> <table style="width:592px"><tr><th>Year</th><th>Publications</th></tr><tr><td style="text-align:center;">1998</td><td style="text-align:center;">2</td></tr><tr><td style="text-align:center;">2000</td><td style="text-align:center;">2</td></tr><tr><td style="text-align:center;">2001</td><td style="text-align:center;">2</td></tr><tr><td style="text-align:center;">2003</td><td style="text-align:center;">3</td></tr><tr><td style="text-align:center;">2004</td><td style="text-align:center;">5</td></tr><tr><td style="text-align:center;">2005</td><td style="text-align:center;">6</td></tr><tr><td style="text-align:center;">2006</td><td style="text-align:center;">7</td></tr><tr><td style="text-align:center;">2007</td><td style="text-align:center;">7</td></tr><tr><td style="text-align:center;">2008</td><td style="text-align:center;">9</td></tr><tr><td style="text-align:center;">2009</td><td style="text-align:center;">3</td></tr><tr><td style="text-align:center;">2010</td><td style="text-align:center;">11</td></tr><tr><td style="text-align:center;">2011</td><td style="text-align:center;">12</td></tr><tr><td style="text-align:center;">2012</td><td style="text-align:center;">6</td></tr><tr><td style="text-align:center;">2013</td><td style="text-align:center;">13</td></tr><tr><td style="text-align:center;">2014</td><td style="text-align:center;">7</td></tr><tr><td style="text-align:center;">2015</td><td style="text-align:center;">6</td></tr><tr><td style="text-align:center;">2016</td><td style="text-align:center;">6</td></tr><tr><td style="text-align:center;">2017</td><td style="text-align:center;">6</td></tr><tr><td style="text-align:center;">2018</td><td style="text-align:center;">6</td></tr><tr><td style="text-align:center;">2019</td><td style="text-align:center;">8</td></tr><tr><td style="text-align:center;">2020</td><td style="text-align:center;">6</td></tr><tr><td style="text-align:center;">2021</td><td style="text-align:center;">9</td></tr><tr><td style="text-align:center;">2022</td><td style="text-align:center;">14</td></tr><tr><td style="text-align:center;">2023</td><td style="text-align:center;">12</td></tr><tr><td style="text-align:center;">2024</td><td style="text-align:center;">13</td></tr><tr><td style="text-align:center;">2025</td><td style="text-align:center;">2</td></tr></table> </div> </div> <div id="divFieldSummary" style='display: none; margin-top: 6px;'> <div class="details-text" style="margin-bottom: 10px;"> This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, <a onclick="showFieldSummaryAlt()">click here</a>. </div> <div id="publicationJournalHeadings"> <div id="piechart" style="width: 580px; height: 400px;"></div> </div> </div> <div id="divFieldSummaryAlt" style='display: none; margin-top: 6px;' class="listTable"> <div class="details-text" style="margin-bottom: 10px;"> This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. 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"; text = text + authors + '. '; text = text + title; if (ids) text = text + item.getElementsByTagName("span")[2].textContent; text = text + "\r\n"; if (doubleSpacing) text = text + "\r\n"; } catch (err) { } var item = lis[i].cloneNode(true); } document.getElementById("txtPublications-text-options").textContent = text; } </script> <script type="text/javascript" src="https://www.gstatic.com/charts/loader.js"></script> <script type="text/javascript" src="//ajax.googleapis.com/ajax/libs/jquery/1.10.2/jquery.min.js"></script> <script type="text/javascript"> // Load the Visualization API and the piechart package. google.charts.load('current', { 'packages': ['corechart'] }); // Set a callback to run when the Google Visualization API is loaded. //google.charts.setOnLoadCallback(drawChart); function drawChart() { var jsonData = $.ajax({ url: "https://profiles.ucsd.edu/profile/modules/CustomViewAuthorInAuthorship/BibliometricsSvc.aspx?p=180855", dataType: "json", async: false }).responseText; // Create our data table out of JSON data loaded from server. var data = new google.visualization.DataTable(jsonData); var colors = jsonData.substring(jsonData.lastIndexOf('\"colors\": \"[#') + 12, jsonData.indexOf("]", jsonData.lastIndexOf('\"colors\": \"[#') + 12)); var colorArray = colors.split(","); //colorArray = ['#4E79A7', '#F28E2B', '#E15759', '#76B7B2', '#59A14F', '#EDC948', '#B07AA1', '#FF9DA7', '#9C755F', '#BAB0AC']; // Instantiate and draw our chart, passing in some options. var chart = new google.visualization.PieChart(document.getElementById('piechart')); chart.draw(data, { width: 680, height: 300, fontSize: 12, colors: colorArray, legend: {alignment: 'center'}, chartArea: {left:20,top:20,width:'90%',height:'90%'}, tooltip: { text: 'percentage' } }); var altTableText = jsonData.substring(jsonData.lastIndexOf('\"altTxtTable\": \"') + 16, jsonData.indexOf("</table>", jsonData.lastIndexOf('\"altTxtTable\": \"') + 16) + 5); document.getElementById("publicationJournalHeadingsAlt").innerHTML = altTableText; } </script> </div></div></div></div> <div class="SupportText"> </div> </div> </div> <div class="profilesContentPassive"> <div class="panelPassive"> <div class="passive-header"> Vineet's Networks </div>  <div class="passiveSectionBody"></div> <div class="passiveSectionLine"></div> <div class="passiveSectionHead"> <div style="white-space: nowrap; display: inline"> Concepts (564) <a id="ctl00_ContentPassive_rptPassive_ctl01_ctl00_passiveList_ctl00_Info" class="questionImage"></a> </div> <div id='402aa7c7-62ce-4ecf-9a59-d5ab9c33cb35' class='passiveSectionHeadDescription' style='display: block;'> <div>Derived automatically from this person's publications.</div> </div> </div> <div class="passiveSectionBody"> <ul> <li> <a id="ctl00_ContentPassive_rptPassive_ctl01_ctl00_passiveList_ctl01_itemUrl" href="https://profiles.ucsd.edu/profile/152233">Oncogenes</a> </li> <li> <a id="ctl00_ContentPassive_rptPassive_ctl01_ctl00_passiveList_ctl02_itemUrl" href="https://profiles.ucsd.edu/profile/148343">Gene Amplification</a> </li> <li> <a id="ctl00_ContentPassive_rptPassive_ctl01_ctl00_passiveList_ctl03_itemUrl" href="https://profiles.ucsd.edu/profile/162319">Genomics</a> </li> <li> <a id="ctl00_ContentPassive_rptPassive_ctl01_ctl00_passiveList_ctl04_itemUrl" href="https://profiles.ucsd.edu/profile/158493">Genome</a> </li> <li> <a id="ctl00_ContentPassive_rptPassive_ctl01_ctl00_passiveList_ctl05_itemUrl" href="https://profiles.ucsd.edu/profile/155232">Software</a> </li> </ul> </div> <div class="dblarrow"> <a id="ctl00_ContentPassive_rptPassive_ctl01_ctl00_passiveList_ctl06_moreurl" class="prns-explore-btn" href="https://profiles.ucsd.edu/vineet.bafna/1453">Explore</a> </div> <div class="passiveSectionLine">_</div> <div class="passiveSectionHead"> <div style="white-space: nowrap; display: inline"> Co-Authors (103) <a id="ctl00_ContentPassive_rptPassive_ctl02_ctl00_passiveList_ctl00_Info" class="questionImage"></a> </div> <div id='18111fae-cf91-43dc-9419-25db1ec06b05' class='passiveSectionHeadDescription' style='display: block;'> <div>People in Profiles who have published with this person.</div> </div> </div> <div class="passiveSectionBody"> <ul> <li> <a href = 'https://profiles.ucsd.edu/jens-christian.luebeck'><div class='thumbnail'><img src = 'https://profiles.ucsd.edu/profile/Modules/CustomViewPersonGeneralInfo/PhotoHandler.ashx?NodeID=252527502&Thumbnail=True&Width=15' width='15' height='30'/></div>Luebeck, Jens-christian<span class='researcherprofiles--institution-name-associated-with-researcher'>UCSD</span></a> </li> <li> <a href = 'https://profiles.ucsd.edu/vikas.bansal'><div class='thumbnail'><img src = 'https://profiles.ucsd.edu/profile/Modules/CustomViewPersonGeneralInfo/PhotoHandler.ashx?NodeID=196201&Thumbnail=True&Width=15' width='15' height='30'/></div>Bansal, Vikas<span class='researcherprofiles--institution-name-associated-with-researcher'>UCSD</span></a> </li> <li> <a href = 'https://profiles.ucsd.edu/gabriel.haddad'><div class='thumbnail'><img src = 'https://profiles.ucsd.edu/profile/Modules/CustomViewPersonGeneralInfo/PhotoHandler.ashx?NodeID=193720&Thumbnail=True&Width=15' width='15' height='30'/></div>Haddad, Gabriel<span class='researcherprofiles--institution-name-associated-with-researcher'>UCSD</span></a> </li> <li> <a href = 'https://profiles.ucsd.edu/kaiyuan.zhu'><div class='thumbnail'><img src = 'https://profiles.ucsd.edu/profile/Modules/CustomViewPersonGeneralInfo/PhotoHandler.ashx?NodeID=229404410&Thumbnail=True&Width=15' width='15' height='30'/></div>Zhu, Kaiyuan<span class='researcherprofiles--institution-name-associated-with-researcher'>UCSD</span></a> </li> <li> <a href = 'https://profiles.ucsd.edu/pavel.pevzner'><div class='thumbnail'><img src = 'https://profiles.ucsd.edu/profile/Modules/CustomViewPersonGeneralInfo/PhotoHandler.ashx?NodeID=184764&Thumbnail=True&Width=15' width='15' height='30'/></div>Pevzner, Pavel<span class='researcherprofiles--institution-name-associated-with-researcher'>UCSD</span></a> </li> </ul> </div> <div class="dblarrow"> <a id="ctl00_ContentPassive_rptPassive_ctl02_ctl00_passiveList_ctl06_moreurl" class="prns-explore-btn" href="https://profiles.ucsd.edu/vineet.bafna/65">Explore</a> </div> <div class="passiveSectionLine">_</div> <div class="passiveSectionHead"> <div style="white-space: nowrap; display: inline"> Similar People (60) <a id="ctl00_ContentPassive_rptPassive_ctl03_ctl00_passiveList_ctl00_Info" class="questionImage"></a> </div> <div id='7cfbe1b9-34ce-4b0c-becf-8696cab92c3a' class='passiveSectionHeadDescription' style='display: block;'> <div>People who share similar concepts with this person.</div> </div> </div> <div class="passiveSectionBody"> <ul> <li> <a href = 'https://profiles.ucsd.edu/pavel.pevzner'><div class='thumbnail'><img src = 'https://profiles.ucsd.edu/profile/Modules/CustomViewPersonGeneralInfo/PhotoHandler.ashx?NodeID=184764&Thumbnail=True&Width=15' width='15' height='30'/></div>Pevzner, Pavel<span class='researcherprofiles--institution-name-associated-with-researcher'>UCSD</span></a> </li> <li> <a href = 'https://profiles.ucsf.edu/david.haussler'><div class='thumbnail'><img src = 'https://profiles.ucsf.edu/profile/Modules/CustomViewPersonGeneralInfo/PhotoHandler.ashx?NodeID=197787018&Thumbnail=True&Width=15' width='15' height='30'/></div>Haussler, David<span class='researcherprofiles--institution-name-associated-with-researcher'>UCSF</span></a> </li> <li> <a href = 'https://profiles.ucla.edu/eleazar.eskin'><div class='thumbnail'><img src = 'https://profiles.ucla.edu/profile/Modules/CustomViewPersonGeneralInfo/PhotoHandler.ashx?NodeID=270326572&Thumbnail=True&Width=15' width='15' height='30'/></div>Eskin, Eleazar<span class='researcherprofiles--institution-name-associated-with-researcher'>UCLA</span></a> </li> <li> <a href = 'https://profiles.ucla.edu/paul.boutros'><div class='thumbnail'><img src = 'https://profiles.ucla.edu/profile/Modules/CustomViewPersonGeneralInfo/PhotoHandler.ashx?NodeID=96347859&Thumbnail=True&Width=15' width='15' height='30'/></div>Boutros, Paul<span class='researcherprofiles--institution-name-associated-with-researcher'>UCLA</span></a> </li> <li> <a href = 'https://profiles.ucsf.edu/andrej.sali'><div class='thumbnail'><img src = 'https://profiles.ucsf.edu/profile/Modules/CustomViewPersonGeneralInfo/PhotoHandler.ashx?NodeID=192902&Thumbnail=True&Width=15' width='15' height='30'/></div>Sali, Andrej<span class='researcherprofiles--institution-name-associated-with-researcher'>UCSF</span></a> </li> </ul> </div> <div class="dblarrow"> <a id="ctl00_ContentPassive_rptPassive_ctl03_ctl00_passiveList_ctl06_moreurl" class="prns-explore-btn" href="https://profiles.ucsd.edu/vineet.bafna/202">Explore</a> </div> <div class="passiveSectionLine">_</div> <div class="passiveSectionHead"> <div style="white-space: nowrap; 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