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<!DOCTYPE html> <html lang="en-gb"> <head> <title>Accessing Ensembl Data</title> <link rel="stylesheet" type="text/css" media="all" href="/minified/98adc89a8b4418c03a4c81d5bf76272d.css"/><link rel="stylesheet" type="text/css" media="all" href="/minified/9bafd8bb591fb39bcb766b0160434c45.image.css"/> <link type="image/png" rel="icon" href="/i/ensembl-favicon.png" /> <link href="/apple-touch-icon.png" rel="apple-touch-icon" type="image/png" /> <link rel="search" href="//useast.ensembl.org/opensearch/all.xml" title="Ensembl (All)" type="application/opensearchdescription+xml" /> <meta name="google-site-verification" content="tG3WW0bg9gNaIHH002gJl-fV2k0bzf-ZxC8pBqXTaNo" /> <meta name="viewport" content="target-densitydpi=device-dpi, width=device-width, initial-scale=1.0, maximum-scale=2.0, user-scalable=yes" /> <script>var prefetch = 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title="API & software">API</a></li><li class=" short_tab" style="display:none"><a href="/info/about/" title="About us">About</a></li><li class=" long_tab" style="display:block"><a href="/info/website/">Using this website</a></li><li class=" long_tab" style="display:block"><a href="/info/genome/">Annotation and prediction</a></li><li class=" active long_tab" style="display:block"><a href="/info/data/">Data access</a></li><li class=" long_tab" style="display:block"><a href="/info/docs/">API & software</a></li><li class=" long_tab" style="display:block"><a href="/info/about/">About us</a></li></ul></div> </div> <div id="main_holder"> <div id="page_nav_wrapper"> <div id="page_nav" class="nav print_hide js_panel floating"> <input type="hidden" class="panel_type" value="LocalContext" /> <div class="header">In this section</div> <ul class="local_context"> <li class="top_level"><img src="/i/leaf.gif" class="toggle export.html" alt=""><a href="export.html"><b>Exporting data via website</b></a></li><li class="top_level"><img src="/i/leaf.gif" class="toggle api.html" alt=""><a href="api.html"><b>API data access</b></a></li><li class="top_level"><img src="/i/leaf.gif" class="toggle mysql.html" alt=""><a href="mysql.html"><b>Public MySQL Server</b></a></li><li class="top_level parent"><img src="/i/open.gif" class="toggle _info_data_ftp_" alt=""><a href="/info/data/ftp/"><b>FTP Download</b></a><ul><li class="last"><img src="/i/leaf.gif"><a href="/info/data/ftp/rsync.html" title="Downloading with rsync">Downloading with rsync</a></li></ul></li><li class="top_level parent"><img src="/i/open.gif" class="toggle _info_data_biomart_" alt=""><a href="/info/data/biomart/"><b>BioMart</b></a><ul><li><img src="/i/leaf.gif"><a href="/info/data/biomart/biomart_r_package.html" title="BiomaRt Bioc R package">BiomaRt Bioc R package</a></li><li><img src="/i/leaf.gif"><a href="/info/data/biomart/biomart_perl_api.html" title="BioMart Perl API">BioMart Perl API</a></li><li><img src="/i/leaf.gif"><a href="/info/data/biomart/biomart_restful.html" title="BioMart RESTful access">BioMart RESTful access</a></li><li><img src="/i/leaf.gif"><a href="/info/data/biomart/biomart_combining_species_datasets.html" title="Combining species datasets">Combining species datasets</a></li><li class="last"><img src="/i/leaf.gif"><a href="/info/data/biomart/how_to_use_biomart.html" title="How to use BioMart">How to use BioMart</a></li></ul></li><li class="last"><img src="/i/leaf.gif" class="toggle virtual_machine.html" alt=""><a href="virtual_machine.html"><b>Virtual Machine</b></a></li> </ul> <div class="js_panel" style="margin:16px 0 0 8px"> <input type="hidden" class="panel_type" value="SearchBox" /> <form action="/Multi/Psychic" class="clear search-form" method="get"><fieldset><input name="site" value="ensembl" type="hidden" /><input value="Documentation" type="hidden" name="facet_feature_type" /><div class="form-field ff-multi"><div class="ff-inline ff-right"><input id="q" class="query optional _string inactive ftext input" value="Search documentation…" type="text" size="20" name="q" /><input type="submit" value="Go" class="fbutton" id="7wT9B6qr_1" /></div></div></fieldset></form> </div> <p class="invisible">.</p> </div> </div> <div id="main"> <ul class="breadcrumbs print_hide"><li><a class="home" href="//useast.ensembl.org">Home</a></li><li><a href="/info/">Help & Documentation</a></li><li class="last"><a href="/info/data/" title="Accessing Ensembl Data">Accessing Ensembl Data</a></li></ul> <div id="content"><div id="static"> <h1>Accessing Ensembl Data</h1> <p>Ensembl data is available through a number of routes - which you choose depends on the amount and type of data you wish to fetch. Please note that Ensembl coordinates always have a one-based start.</p> <table class="blobs"><tr><td><h2>Small quantities of data</h2> <p><a href="/info/data/export.html"><img src="/img/download_sequence.gif" class="float-right" style="width:200px;height:100px" alt="" title="Find out more" /></a>Many of the pages displaying Ensembl genomic data offer an <a href="export.html">export</a> option, suitable for small amounts of data, e.g. a single gene sequence.</p> <p>Click on the 'Export data' button in the lefthand menu of most pages to export:</p> <ul> <li>FASTA sequence</li> <li>GTF or GFF features</li> </ul> <p>...and more!</p> </td><td> <h2>Fast programmatic access</h2> <p><a href="https://rest.ensembl.org"><img src="/img/download_api.gif" class="float-right" style="width:200px;height:100px" alt="" title="Visit our REST site" /></a>For fast access in any programming language, we recommend using our <a href="https://rest.ensembl.org">REST server</a>. Various REST endpoints provide access to vast amounts of Ensembl data.</p> </td></tr><tr><td> <h2>Complete datasets and databases</h2> <p><a href="https://rest.ensembl.org"><img src="/img/download_code.gif" class="float-right" style="width:200px;height:100px" alt="" title="Find out more" /></a>Many datasets, e.g. all genes for a species, are available to download in a variety of formats from our <a href="https://ftp.ensembl.org/pub">FTP site</a>.</p> <p>Entire databases are also available via FTP as MySQL dumps.</p> </td><td> <h2>Complex cross-database queries</h2> <p><a href="/biomart/martview"><img src="/img/download_mart.gif" class="float-right" style="width:200px;height:100px" alt="" title="Try BioMart" /></a>More complex datasets can be retrieved using the <a href="biomart/">BioMart</a> data-mining tool.</p> </td></tr></table> <div class="tinted-box center"><p>All data produced by the Ensembl project is <a href="/info/about/legal/">freely available</a> for your own use.</p></div> 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/></fieldset> </form> <input type="hidden" id="species_path" name="species_path" value="" /> <input type="hidden" id="gdpr_version" name="gdpr_version" value="2.0.0" /> <input type="hidden" id="gdpr_policy_url" name="gdpr_policy_url" value="https://www.ensembl.org/info/about/legal/privacy.html" /> <input type="hidden" id="gdpr_terms_url" name="gdpr_terms_url" value="https://www.ebi.ac.uk/about/terms-of-use" /> <input type="hidden" id="gdpr_cookie_name" name="gdpr_cookie_name" value="ENSEMBL_PRIVACY_POLICY" /> <input type="hidden" id="species_common_name" name="species_common_name" value="Human" /> <input type="hidden" id="ensembl_image_root" name="ensembl_image_root" value="/i/" /> <input type="hidden" id="max_region_length" name="max_region_length" value="1000100" /> <input type="hidden" id="ensembl_species_image" name="ensembl_species_image" value="/i/species/Homo_sapiens.png" /> <div id="modal_bg"></div> <div id="modal_panel" class="js_panel"> <input type="hidden" class="panel_type" 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value=Mola_mola|Sinocyclocheilus_rhinocerous|Cairina_moschata_domestica|Marmota_marmota_marmota|Xiphophorus_couchianus|Astatotilapia_calliptera|Ciona_intestinalis|Cyprinus_carpio_huanghe|Chelonoidis_abingdonii|Canis_lupus_dingo|Microtus_ochrogaster|Heterocephalus_glaber_female|Gasterosteus_aculeatus_marine_bam|Mus_musculus_BALB_cJ|Echeneis_naucrates|Octodon_degus|Ovis_aries_east_friesian|Sinocyclocheilus_anshuiensis|Cynoglossus_semilaevis|Chrysemys_picta_bellii|Ovis_aries_chinese_merino|Camelus_dromedarius|Oryzias_sinensis|Monodelphis_domestica|Sander_lucioperca|Paramormyrops_kingsleyae|Ovis_aries_polled_dorset|Saccharomyces_cerevisiae|Rattus_norvegicus|Mus_musculus_LP_J|Colobus_angolensis_palliatus|Mesocricetus_auratus|Mus_musculus_AKR_J|Apteryx_rowi|Stachyris_ruficeps|Sarcophilus_harrisii|Sus_scrofa_wuzhishan|Panthera_pardus|Salmo_salar_north_american_atlantic_salmon|Ictalurus_punctatus|Chrysolophus_pictus|Poecilia_formosa|Fundulus_heteroclitus|Ficedula_albicollis|Monopterus_albus|Hippocampus_comes|Sus_scrofa_duroc|Mus_musculus_DBA_2J|Carassius_auratus|Aotus_nancymaae|Dipodomys_ordii|Notamacropus_eugenii|Myripristis_murdjan|Capra_hircus_blackbengal|Gasterosteus_aculeatus_marine_syl|Myotis_lucifugus|Terrapene_carolina_triunguis|Apteryx_owenii|Cyprinus_carpio_german_mirror|Anabas_testudineus|Monodon_monoceros|Oncorhynchus_kisutch|Physeter_catodon|Heterocephalus_glaber_male|Cyprinus_carpio_carpio|Anser_cygnoides|Castor_canadensis|Ursus_maritimus|Moschus_moschiferus|Dasypus_novemcinctus|Falco_tinnunculus|Clupea_harengus|Mus_musculus_WSB_EiJ|Sphenodon_punctatus|Mus_musculus_CBA_J|Prolemur_simus|Sus_scrofa_jinhua|Xenopus_tropicalis|Mus_pahari|Maylandia_zebra|Geospiza_fortis|Aquila_chrysaetos_chrysaetos|Callithrix_jacchus|Kryptolebias_marmoratus|Lonchura_striata_domestica|Caenorhabditis_elegans|Mus_musculus|Chelydra_serpentina|Bubo_bubo|Balaenoptera_musculus|Bos_taurus_hybrid|Jaculus_jaculus|Fukomys_damarensis|Ovis_aries_hu|Sus_scrofa_bamei|Anser_brachyrhynchus|Sus_scrofa_landrace|Rhinolophus_ferrumequinum|Mus_musculus_FVB_NJ|Amphilophus_citrinellus|Manacus_vitellinus|Mus_musculus_129S1_SvImJ|Rattus_norvegicus_WKYBbb|Sus_scrofa|Anas_platyrhynchos|Sus_scrofa_largewhite|Macaca_mulatta|Cyanistes_caeruleus|Ovis_aries_romanov|Notechis_scutatus|Dromaius_novaehollandiae|Urocitellus_parryii|Bison_bison_bison|Cebus_imitator|Salmo_salar_north_american_origin_brian|Carlito_syrichta|Pogona_vitticeps|Haplochromis_burtoni|Bos_taurus|Mus_musculus_NOD_ShiLtJ|Phasianus_colchicus|Pan_troglodytes|Canis_lupus_familiarisgermanshepherd|Sparus_aurata|Salmo_salar_european_origin_alta|Canis_lupus_familiarisbasenji|Tursiops_truncatus|Cricetulus_griseus_crigri|Zosterops_lateralis_melanops|Larimichthys_crocea|Suricata_suricatta|Mastacembelus_armatus|Equus_asinus|Procavia_capensis|Gopherus_evgoodei|Periophthalmus_magnuspinnatus|Pteropus_vampyrus|Phascolarctos_cinereus|Erythrura_gouldiae|Salarias_fasciatus|Zalophus_californianus|Cercocebus_atys|Seriola_dumerili|Ornithorhynchus_anatinus|Pygocentrus_nattereri|Lepidothrix_coronata|Ictidomys_tridecemlineatus|Ochotona_princeps|Neolamprologus_brichardi|Ovis_aries_qiaoke|Salvator_merianae|Cottoperca_gobio|Bos_indicus_hybrid|Peromyscus_maniculatus_bairdii|Pundamilia_nyererei|Ursus_americanus|Panthera_tigris_altaica|Danio_rerio|Takifugu_rubripes|Strix_occidentalis_caurina|Scleropages_formosus|Choloepus_hoffmanni|Sus_scrofa_ningxiang|Sinocyclocheilus_grahami|Cavia_aperea|Stegastes_partitus|Sus_scrofa_pietrain|Seriola_lalandi_dorsalis|Ovis_aries_rambouillet|Poecilia_reticulata|Bos_mutus|Sus_scrofa_ossabaw_miniature|Nothobranchius_furzeri|Mus_musculus_C3H_HeJ|Cyprinodon_variegatus|Mus_musculus_NZO_HlLtJ|Homo_sapiens|Panthera_leo|Sorex_araneus|Sus_scrofa_hampshire|Microcebus_murinus|Mus_musculus_C57BL_6NJ|Ailuropoda_melanoleuca|Gasterosteus_aculeatus_freshwater_bot|Saimiri_boliviensis_boliviensis|Capra_hircus_saanen_dairy|Anas_zonorhyncha|Podarcis_muralis|Cyclopterus_lumpus|Cricetulus_griseus_picr|Sus_scrofa_usmarc|Sciurus_vulgaris|Gallus_gallus_GCA_000002315.5|Gadus_morhua_celtic_sea|Gallus_gallus|Oryzias_latipes_hni|Astyanax_mexicanus|Gallus_gallus_GCA_016700215.2|Vombatus_ursinus|Pavo_cristatus|Sus_scrofa_pb115|Salmo_salar|Loxodonta_africana|Catagonus_wagneri|Electrophorus_electricus|Salmo_trutta|Crocodylus_porosus|Corvus_moneduloides|Theropithecus_gelada|Macaca_nemestrina|Oryzias_javanicus|Capra_hircus|Rhinopithecus_roxellana|Sus_scrofa_nihs_2020|Eptatretus_burgeri|Canis_lupus_familiarisboxer|Acanthochromis_polyacanthus|Strigops_habroptila|Leptobrachium_leishanense|Oryzias_latipes|Sus_scrofa_bama_miniature|Apteryx_haastii|Sus_scrofa_rongchang|Taeniopygia_guttata|Oreochromis_niloticus|Lates_calcarifer|Lynx_canadensis|Cervus_hanglu_yarkandensis|Sus_scrofa_meishan|Ovis_aries_white_dorper|Propithecus_coquereli|Rhinopithecus_bieti|Nothoprocta_perdicaria|Echinops_telfairi|Pan_paniscus|Tetraodon_nigroviridis|Sus_scrofa_berkshire|Anolis_carolinensis|Junco_hyemalis|Mus_caroli|Rattus_norvegicus_SHRUtx|Ovis_ari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