Table of Contents — February 2021, 31 (2)

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href="/cgi/adclick/?ad=57887&adclick=true&url=https%3A%2F%2Fnanoporetech.com%2Fapplications%2Ftechniques%2Fmultiomics%3Futm_campaign%3DMOD%2B2024%26utm_source%3Dcoldspring%26utm_medium%3Dbanner%26utm_content%3Dmultiomics%2Bpage" target="_blank"><img class="adborder0" title="ONT" src="//genome.cshlp.org/adsystem/graphics/8109167297883968/genome/ONT%20TOC1-%20Ask%20more%20questions%20.jpg?ad=57887&adview=true" alt="ONT" /></a></li> </ul> <div id="toc-header"> <h1>Table of Contents</h1><cite>February 2021; 31 (2)</cite> </div> <div class="section-break"> </div> <form method="get" action="/gca"> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1 pub-section-Research first-item no-children no-parent"> <h2 id="Research"><span><a class="toc-section-return" href="#content-block"></a>Research</span></h2> <ul class="cit-list"> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/171" /><label for="gca-form-cb-d8938411e109Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Post-transcriptional circadian regulation in macrophages organizes temporally distinct immunometabolic states </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Emily J. Collins</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Mariana P. Cervantes-Silva</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">George A. Timmons</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">James R. O'Siorain</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Annie M. Curtis</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Jennifer M. Hurley</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">171</span><span class="cit-sep">-</span><span class="cit-last-page">185</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>January 12, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.263814.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/171.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/171.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/171.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/171/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/186" /><label for="gca-form-cb-d8938411e110Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">KDM1A maintains genome-wide homeostasis of transcriptional enhancers </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Saurabh Agarwal</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Katherine M. Bonefas</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Patricia M. Garay</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Emily Brookes</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yumie Murata-Nakamura</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Robert S. Porter</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Todd S. Macfarlan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Bing Ren</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Shigeki Iwase</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">186</span><span class="cit-sep">-</span><span class="cit-last-page">197</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>January 7, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.234559.118 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/186.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/186.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/186.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/186/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/198" /><label for="gca-form-cb-d8938411e111Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Dosage-sensitive functions in embryonic development drove the survival of genes on sex-specific chromosomes in snakes, birds, and mammals </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Daniel W. Bellott</span><span class="cit-sep cit-sep-two-item-separator"> and</span></li> <li class="last-item"><span class="cit-auth cit-auth-type-author">David C. Page</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">198</span><span class="cit-sep">-</span><span class="cit-last-page">210</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>January 21, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.268516.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/198.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/198.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/198.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/198/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit openaccess creative-commons creative-commons-by/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/211" /><label for="gca-form-cb-d8938411e112Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group"><em>Cis</em>-acting variation is common across regulatory layers but is often buffered during embryonic development </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Swann Floc'hlay</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Emily S. Wong</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Bingqing Zhao</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Rebecca R. Viales</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Morgane Thomas-Chollier</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Denis Thieffry</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">David A. Garfield</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Eileen E.M. Furlong</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">211</span><span class="cit-sep">-</span><span class="cit-last-page">224</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>December 11, 2020<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.266338.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/211.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/211.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/211.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/211/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/225" /><label for="gca-form-cb-d8938411e113Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Genome and time-of-day transcriptome of <em>Wolffia australiana</em> link morphological minimization with gene loss and less growth control </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Todd P. Michael</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Evan Ernst</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nolan Hartwick</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Philomena Chu</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Douglas Bryant</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sarah Gilbert</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Stefan Ortleb</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Erin L. Baggs</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">K. Sowjanya Sree</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Klaus J. Appenroth</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Joerg Fuchs</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Florian Jupe</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Justin P. Sandoval</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ksenia V. Krasileva</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ljudmylla Borisjuk</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Todd C. Mockler</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Joseph R. Ecker</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Robert A. Martienssen</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Eric Lam</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">225</span><span class="cit-sep">-</span><span class="cit-last-page">238</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>December 23, 2020<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.266429.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/225.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/225.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/225.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/225/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/239" /><label for="gca-form-cb-d8938411e114Research">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Transporter genes in biosynthetic gene clusters predict metabolite characteristics and siderophore activity </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Alexander Crits-Christoph</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nicholas Bhattacharya</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Matthew R. Olm</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yun S. Song</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Jillian F. Banfield</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">239</span><span class="cit-sep">-</span><span class="cit-last-page">250</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>December 23, 2020<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.268169.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/239.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/239.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/239.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/239/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1 pub-section-Method no-children no-parent"> <h2 id="Method"><span><a class="toc-section-return" href="#content-block"></a>Methods</span></h2> <ul class="cit-list"> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/251" /><label for="gca-form-cb-d8938411e123Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">TSA-seq reveals a largely conserved genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Liguo Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yang Zhang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yu Chen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Omid Gholamalamdari</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yuchuan Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Jian Ma</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Andrew S. Belmont</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">251</span><span class="cit-sep">-</span><span class="cit-last-page">264</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>December 18, 2020<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.266239.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/251.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/251.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/251.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/251/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/265" /><label for="gca-form-cb-d8938411e124Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Evidence of widespread, independent sequence signature for transcription factor cobinding </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Manqi Zhou</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Hongyang Li</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Xueqing Wang</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Yuanfang Guan</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">265</span><span class="cit-sep">-</span><span class="cit-last-page">278</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>December 10, 2020<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.267310.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/265.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/265.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/265.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/265/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/279" /><label for="gca-form-cb-d8938411e125Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Epigenomic differences in the human and chimpanzee genomes are associated with structural variation </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Xiaoyu Zhuo</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Alan Y. Du</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Erica C. Pehrsson</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Daofeng Li</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Ting Wang</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">279</span><span class="cit-sep">-</span><span class="cit-last-page">290</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>December 10, 2020<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.263491.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/279.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/279.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/279.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/279/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/291" /><label for="gca-form-cb-d8938411e126Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Zhiyi Sun</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Romualdas Vaisvila</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Laura-Madison Hussong</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Bo Yan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Chloé Baum</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Lana Saleh</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Mala Samaranayake</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Shengxi Guan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nan Dai</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ivan R. Corrêa, Jr.</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sriharsa Pradhan</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Theodore B. Davis</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Thomas C. Evans, Jr.</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Laurence M. Ettwiller</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">291</span><span class="cit-sep">-</span><span class="cit-last-page">300</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>January 19, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.265306.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/291.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/291.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/291.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/291/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/301" /><label for="gca-form-cb-d8938411e127Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Effects of transcriptional noise on estimates of gene and transcript expression in RNA sequencing experiments </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Ales Varabyou</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Steven L. Salzberg</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Mihaela Pertea</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">301</span><span class="cit-sep">-</span><span class="cit-last-page">308</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>December 23, 2020<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.266213.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/301.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/301.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/301.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/301/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/309" /><label for="gca-form-cb-d8938411e128Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Contamination detection in sequencing studies using the mitochondrial phylogeny </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Hansi Weissensteiner</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Lukas Forer</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Liane Fendt</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Azin Kheirkhah</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Antonio Salas</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Florian Kronenberg</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Sebastian Schoenherr</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">309</span><span class="cit-sep">-</span><span class="cit-last-page">316</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>January 15, 2021<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.256545.119 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/309.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/309.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/309.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/309/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/317" /><label for="gca-form-cb-d8938411e129Method">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Genome-wide prediction of DNA mutation effect on nucleosome positions for yeast synthetic genomics </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Etienne Routhier</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Edgard Pierre</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Ghazaleh Khodabandelou</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Julien Mozziconacci</span></li> </ul> <cite><abbr title="Genome Research" class="site-title">Genome Res.</abbr> <span class="cit-print-date">February 2021 </span><span class="cit-vol">31<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">317</span><span class="cit-sep">-</span><span class="cit-last-page">326</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>December 18, 2020<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gr.264416.120 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/31/2/317.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/31/2/317.full" rel="full-text">Full Text</a></li> <li><a href="/content/31/2/317.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/31/2/317/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> </li> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1 pub-section-Resource last-item no-children no-parent"> <h2 id="Resource"><span><a class="toc-section-return" href="#content-block"></a>Resources</span></h2> <ul class="cit-list"> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genome;31/2/327" /><label for="gca-form-cb-d8938411e138Resource">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">A platform for curated products from novel open reading frames prompts reinterpretation of disease variants </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Matthew D.C. Neville</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Robin Kohze</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Chaitanya Erady</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Narendra Meena</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Matthew Hayden</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">David N. 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Table of Contents — February 2021, 31 (2)