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CRAN: Package pvclust
<!DOCTYPE html> <html> <head> <title>CRAN: Package pvclust</title> <link rel="canonical" href="https://CRAN.R-project.org/package=pvclust"/> <link rel="stylesheet" type="text/css" href="../../CRAN_web.css" /> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes"/> <meta name="DC.identifier" content="https://CRAN.R-project.org/package=pvclust" /> <meta name="DC.publisher" content="Comprehensive R Archive Network (CRAN)" /> <meta name="og:title" content="pvclust: Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling" /> <meta name="og:description" content="An implementation of multiscale bootstrap resampling for assessing the uncertainty in hierarchical cluster analysis. It provides SI (selective inference) p-value, AU (approximately unbiased) p-value and BP (bootstrap probability) value for each cluster in a dendrogram." /> <meta name="og:image" content="https://CRAN.R-project.org/CRANlogo.png" /> <meta name="og:type" content="website" /> <meta name="og:url" content="https://CRAN.R-project.org/package=pvclust" /> <meta name="twitter:card" content="summary" /> <meta name="twitter:site" content="@_R_Foundation" /> <style type="text/css"> table td { vertical-align: top; } </style> </head> <body> <div class="container"> <h2>pvclust: Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling</h2> <p>An implementation of multiscale bootstrap resampling for assessing the uncertainty in hierarchical cluster analysis. It provides SI (selective inference) p-value, AU (approximately unbiased) p-value and BP (bootstrap probability) value for each cluster in a dendrogram.</p> <table> <tr> <td>Version:</td> <td>2.2-0</td> </tr> <tr> <td>Depends:</td> <td>R (≥ 2.10.0)</td> </tr> <tr> <td>Suggests:</td> <td><a href="../MASS/index.html"><span class="CRAN">MASS</span></a>, parallel</td> </tr> <tr> <td>Published:</td> <td>2019-11-19</td> </tr> <tr> <td>DOI:</td> <td><a href="https://doi.org/10.32614/CRAN.package.pvclust">10.32614/CRAN.package.pvclust</a></td> </tr> <tr> <td>Author:</td> <td>Ryota Suzuki, Yoshikazu Terada, Hidetoshi Shimodaira</td> </tr> <tr> <td>Maintainer:</td> <td>Ryota Suzuki <suzuki at ef-prime.com></td> </tr> <tr> <td>License:</td> <td><a href="../../licenses/GPL-2"><span class="CRAN">GPL-2</span></a> | <a href="../../licenses/GPL-3"><span class="CRAN">GPL-3</span></a> [expanded from: GPL (≥ 2)]</td> </tr> <tr> <td>URL:</td> <td><a href="http://stat.sys.i.kyoto-u.ac.jp/prog/pvclust/" target="_top">http://stat.sys.i.kyoto-u.ac.jp/prog/pvclust/</a></td> </tr> <tr> <td>NeedsCompilation:</td> <td>no</td> </tr> <tr> <td>In views:</td> <td><a href="../../views/Cluster.html"><span class="CRAN">Cluster</span></a>, <a href="../../views/Environmetrics.html"><span class="CRAN">Environmetrics</span></a>, <a href="../../views/HighPerformanceComputing.html"><span class="CRAN">HighPerformanceComputing</span></a></td> </tr> <tr> <td>CRAN checks:</td> <td><a href="../../checks/check_results_pvclust.html"><span class="CRAN">pvclust results</span></a></td> </tr> </table> <h4>Documentation:</h4> <table> <tr> <td> Reference manual: </td> <td> <a href="pvclust.pdf"> <span class="CRAN"> pvclust.pdf </span> </a> </td> </tr> </table> <h4>Downloads:</h4> <table> <tr> <td> Package source: </td> <td> <a href="../../../src/contrib/pvclust_2.2-0.tar.gz"> <span class="CRAN"> pvclust_2.2-0.tar.gz </span> </a> </td> </tr> <tr> <td> Windows binaries: </td> <td> r-devel: <a href="../../../bin/windows/contrib/4.5/pvclust_2.2-0.zip"><span class="CRAN">pvclust_2.2-0.zip</span></a>, r-release: <a href="../../../bin/windows/contrib/4.4/pvclust_2.2-0.zip"><span class="CRAN">pvclust_2.2-0.zip</span></a>, r-oldrel: <a href="../../../bin/windows/contrib/4.3/pvclust_2.2-0.zip"><span class="CRAN">pvclust_2.2-0.zip</span></a> </td> </tr> <tr> <td> macOS binaries: </td> <td> r-release (arm64): <a href="../../../bin/macosx/big-sur-arm64/contrib/4.4/pvclust_2.2-0.tgz"><span class="CRAN">pvclust_2.2-0.tgz</span></a>, r-oldrel (arm64): <a href="../../../bin/macosx/big-sur-arm64/contrib/4.3/pvclust_2.2-0.tgz"><span class="CRAN">pvclust_2.2-0.tgz</span></a>, r-release (x86_64): <a href="../../../bin/macosx/big-sur-x86_64/contrib/4.4/pvclust_2.2-0.tgz"><span class="CRAN">pvclust_2.2-0.tgz</span></a>, r-oldrel (x86_64): <a href="../../../bin/macosx/big-sur-x86_64/contrib/4.3/pvclust_2.2-0.tgz"><span class="CRAN">pvclust_2.2-0.tgz</span></a> </td> </tr> <tr> <td> Old sources: </td> <td> <a href="https://CRAN.R-project.org/src/contrib/Archive/pvclust"> <span class="CRAN"> pvclust archive </span> </a> </td> </tr> </table> <h4>Reverse dependencies:</h4> <table> <tr> <td>Reverse depends:</td> <td><a href="https://www.bioconductor.org/packages/release/bioc/html/deltaGseg.html" target="_top"><span class="BioC">deltaGseg</span></a></td> </tr> <tr> <td>Reverse imports:</td> <td><a href="../BinMat/index.html"><span class="CRAN">BinMat</span></a>, <a href="https://www.bioconductor.org/packages/release/bioc/html/CBNplot.html" target="_top"><span class="BioC">CBNplot</span></a>, <a href="../Clustering/index.html"><span class="CRAN">Clustering</span></a>, <a href="../OpenRepGrid/index.html"><span class="CRAN">OpenRepGrid</span></a>, <a href="https://www.bioconductor.org/packages/release/bioc/html/PANR.html" target="_top"><span class="BioC">PANR</span></a>, <a href="../scaleboot/index.html"><span class="CRAN">scaleboot</span></a>, <a href="https://www.bioconductor.org/packages/release/bioc/html/signeR.html" target="_top"><span class="BioC">signeR</span></a></td> </tr> <tr> <td>Reverse suggests:</td> <td><a href="../BiodiversityR/index.html"><span class="CRAN">BiodiversityR</span></a>, <a href="../dendextend/index.html"><span class="CRAN">dendextend</span></a>, <a href="https://www.bioconductor.org/packages/release/bioc/html/ggtreeDendro.html" target="_top"><span class="BioC">ggtreeDendro</span></a>, <a href="../isocat/index.html"><span class="CRAN">isocat</span></a>, <a href="../parameters/index.html"><span class="CRAN">parameters</span></a>, <a href="../svs/index.html"><span class="CRAN">svs</span></a></td> </tr> </table> <h4>Linking:</h4> <p>Please use the canonical form <a href="https://CRAN.R-project.org/package=pvclust"><span class="CRAN"><samp>https://CRAN.R-project.org/package=pvclust</samp></span></a> to link to this page.</p> </div> </body> </html>