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class="entry-content"> <div style="height:50px" aria-hidden="true" class="wp-block-spacer"></div> <h2 class="wp-block-heading has-black-color has-text-color"><strong>Publicações associadas a Projetos de Computação Avançada</strong></h2> <div style="height:36px" aria-hidden="true" class="wp-block-spacer"></div> <div class="wp-block-columns has-background is-layout-flex wp-container-core-columns-is-layout-2 wp-block-columns-is-layout-flex" style="background-color:#e4e8f2"> <div class="wp-block-column is-layout-flow wp-block-column-is-layout-flow"> <div class="wp-block-columns is-layout-flex wp-container-core-columns-is-layout-1 wp-block-columns-is-layout-flex"> <div class="wp-block-column is-layout-flow wp-block-column-is-layout-flow"> <h3 class="wp-block-heading"><strong>Como referenciar a FCT e RNCA em artigos científicos ou conferências? </strong></h3> <p class="has-black-color has-text-color">Exemplo em inglês: <em>“This work was produced with the support of <Operacional Center> and it was funded by FCT I.P. under the project Advanced Computing Project <reference> <em>and DOI <URL></em>, platform <name>”</em></p> <p class="has-black-color has-text-color">Caso as suas publicações, decorrentes de um projeto de computação avançada da RNCA, não se encontrem listadas nesta página, envie os detalhes para computacao-avancada@fccn.pt.</p> </div> </div> </div> </div> <div style="height:27px" aria-hidden="true" class="wp-block-spacer"></div> <h2 class="wp-block-heading"><mark style="background-color:rgba(0, 0, 0, 0)" class="has-inline-color has-vivid-green-cyan-color">2025</mark></h2> <ul class="wp-block-list"> <li>Bruno Silva, Luiz Guerreiro Lopes, Fábio Mendonça. Multithreaded and GPU-based implementations of a modified particle swarm optimization algorithm with application to solving large-scale systems of nonlinear equations. Electronics 2025, 14(3), 584. <a href="https://doi.org/10.3390/electronics14030584" target="_blank" rel="noreferrer noopener">https://doi.org/10.3390/electronics14030584</a> <strong>(Projetos: 2023.09611.CPCA.A1@INCD e 2024.07086.CPCA.A1@INCD)</strong></li> </ul> <div style="height:34px" aria-hidden="true" class="wp-block-spacer"></div> <h2 class="wp-block-heading"><mark style="background-color:rgba(0, 0, 0, 0)" class="has-inline-color has-vivid-green-cyan-color">2024</mark></h2> <ul class="wp-block-list"> <li>I.F.M. Costa, C.H.J. Franco, D.S. Nesterov, V. André, L.C.J. Pereira, A.M. Kirillov. Alkoxy-bridged Dicopper(II) Cores Meet Tetracyanonickelate Linkers: Structural, Magnetic, and Theoretical Investigation of Cu/Ni Coordination Polymers. J. Phys. Chem. C, 2024, 128, 6053-6064. DOI: <a href="https://doi.org/10.1021/acs.jpcc.3c08112" target="_blank" rel="noreferrer noopener">https://doi.org/10.1021/acs.jpcc.3c08112 </a><strong>(projecto 2022.74087.CPCA.A0@HPC-UÉ)</strong></li> <li>I.F.M. Costa, C.H.J. Franco, D.S. Nesterov, V. André, L.C.J. Pereira, A.M. Kirillov. Exploring the Assembly, Structures, and Magnetism of Cyanometallate-Driven Coordination Polymers. Cryst. Growth Des., 2024, 24, 7466-7476. DOI: <a href="https://doi.org/10.1021/acs.cgd.4c00557" target="_blank" rel="noreferrer noopener">https://doi.org/10.1021/acs.cgd.4c00557</a> <strong>(projecto 2022.74087.CPCA.A0@HPC-UÉ)</strong></li> <li>Bruno Silva, Luiz Guerreiro Lopes, Fábio Mendonça. Parallel GPU-acceleration of metaphor-less optimization algorithms: Application for solving large-scale nonlinear equation systems. Appl. Sci. 2024, 14(12), 5349. <a href="https://doi.org/10.3390/app14125349" target="_blank" rel="noreferrer noopener">https://doi.org/10.3390/app14125349</a> <strong>(Projetos: 2022.57951.CPCA.A0@INCD e 2023.09611.CPCA.A1@INCD)</strong></li> <li>Bruno Nevado, Guy W. Atchison, Edwin L. Bridges, Steve Orzell, Dmitry Filatov, Colin E. Hughes. Pleistocene diversification of unifoliolate-leaved Lupinus (Leguminosae: Papilionoideae) in Florida. 2024. Molecular Ecology, Volume 33, Issue 3. <a href="https://doi.org/10.1111/mec.17232" target="_blank" rel="noreferrer noopener">https://doi.org/10.1111/mec.17232</a> <strong>(Projeto: 2022.15825.CPCA.A2@INCD)</strong></li> <li>Rui M.P. Pereira, Marian C. Istrate, Fábio G. Figueiras, Veniero Lenzi, Bruna M. Silva, Majdi Benamara, Konstantin N. Romanyuk, Corneliu Ghica, Bernardo G. Almeida, Luís Marques, Mario Pereira, José P.B. Silva. Phase transitions in ferroelectric ZrO2 thin films. 2024. Materials Science in Semiconductor Processing. Volume 172. 108102. <a href="https://doi.org/10.1016/j.mssp.2023.108102" target="_blank" rel="noreferrer noopener">https://doi.org/10.1016/j.mssp.2023.108102</a> <strong>(Projeto: CPCA/A1/415075/2022@HPC-UE)</strong></li> <li>R. Nobre, A. Ilic, S. Santander-Jiménez and L. Sousa, IPU-EpiDet: Identifying Gene Interactions on Massively Parallel Graph-Based AI Accelerators, 2024 IEEE International Parallel and Distributed Processing Symposium (IPDPS), San Francisco, CA, USA, 2024 <strong>(Projeto CPCA-IAC/AV/478750/2022)</strong></li> </ul> <div style="height:34px" aria-hidden="true" class="wp-block-spacer"></div> <h2 class="wp-block-heading"><mark style="background-color:rgba(0, 0, 0, 0)" class="has-inline-color has-vivid-green-cyan-color">2023</mark></h2> <ul class="wp-block-list"> <li>Igor A. Rodrigues Lopes, Miguel Vieira de Carvalho, João A. Marques da Silva, Rui P. Cardoso Coelho, Francisco M. Andrade Pires. Second-order homogenisation of crystal plasticity and martensitic transformation. 2023. European Journal of Mechanics – A/Solids. Volume 102. 105104. <a href="https://doi.org/10.1016/j.euromechsol.2023.105104" target="_blank" rel="noreferrer noopener">https://doi.org/10.1016/j.euromechsol.2023.105104</a> <strong>(Projeto:</strong> <strong>CPCA/A1/420917/2021@INCD)</strong></li> <li>Ana Martins, M. G. Scotto, C. H. Weiss, Sónia Gouveia. Space-time integer-valued ARMA modelling for time series of counts. Electronic Journal of Statistics. 2023. 17(2):3472-3511. <a href="10.1214/23-EJS2183" target="_blank" rel="noreferrer noopener">DOI:10.1214/23-EJS2183</a> <strong>(Projeto: CPCA/A1/449427/2021@HPC-UE)</strong></li> <li>Marco Zecchetto, Tomoaki Watanabe, Koji Nagata, Carlos B. da Silva. Turbulent/non-turbulent interfaces in equilibrium and non-equilibrium regions in the absence of mean shear. International Journal of Heat and Fluid Flow. 2023. Volume 103, 109198. <a href="https://doi.org/10.1016/j.ijheatfluidflow.2023.109198" target="_blank" rel="noreferrer noopener">https://doi.org/10.1016/j.ijheatfluidflow.2023.109198</a>. <strong>(Projeto: CPCA/A1/455167/2021@MACC)</strong></li> <li>G. F. Martins, C. Nascimento, and N. Galamba. Mechanistic Insights into Polyphenols’ Aggregation Inhibition of α-Synuclein and Related Peptides. ACS Chem. Neurosci. 2023, 14, 10, 1905–1920. <a href="https://doi.org/10.1021/acschemneuro.3c00162" target="_blank" rel="noreferrer noopener">https://doi.org/10.1021/acschemneuro.3c00162</a>. <strong>(Projeto: CPCA/A1/470255/2021@MACC)</strong></li> <li>Pedro R. Figueiredo ,  Ricardo D. González , and  Alexandra T. P. Carvalho. Insights into the Degradation of Polymer–Drug Conjugates by an Overexpressed Enzyme in Cancer Cells. <em>Med. Chem.</em> 2023, 66, 4, 2761–2772 <a href="https://doi.org/10.1021/acs.jmedchem.2c01781">https://doi.org/10.1021/acs.jmedchem.2c01781</a> <strong>(Projeto: CPCA/A2/4568/2020@INCD)</strong></li> <li>Bendall, E. E., Bagley, R. K., Sousa, V. C., & Linnen, C. R. (2022). Faster-haplodiploid evolution under divergence-with-gene-flow: Simulations and empirical data from pine-feeding hymenopterans. Molecular Ecology, 31, 2348- 2366. <a href="https://doi.org/10.1111/mec.16410" target="_blank" rel="noreferrer noopener">https://doi.org/10.1111/mec.16410</a> <strong>(Projeto: 2021.09795.CPCA.A2@INCD)</strong></li> <li>Carvalho, J., Morales, H. E., Faria, R., Butlin, R. K., & Sousa, V. C. (2023). Integrating Pool-seq uncertainties into demographic inference. Molecular Ecology Resources, 00, 1-19. <a href="https://doi.org/10.1111/1755-0998.13834" target="_blank" rel="noreferrer noopener">https://doi.org/10.1111/1755-0998.13834</a> <strong>(Projeto: 2021.09795.CPCA.A2@INCD)</strong></li> <li>Carvalho, J., Faria, R., Butlin, R. K., & Sousa, V. C. (2023). poolHelper: An R package to help in designing Pool-Seq studies. Methods in Ecology and Evolution, 00, 1- 8. <a href="https://doi.org/10.1111/2041-210X.14185" target="_blank" rel="noreferrer noopener">https://doi.org/10.1111/2041-210X.14185</a> <strong>(Projeto: 2021.09795.CPCA.A2@INCD)</strong></li> <li>Carneiro J, Pascoal F, Semedo M, Pratas D, Tomasino MP, Rego A, Carvalho MF, Mucha AP, Magalhães C. Mapping human pathogens in wastewater using a metatranscriptomic approach. Environ Res. 2023 Aug 15;231(Pt 1):116040. doi: 10.1016/j.envres.2023.116040 <strong>(Projeto: 2021.09782.CPCA.A2@INCD)</strong></li> <li>D. Gomes, V. P. Markevich, A. R. Peaker, J. Coutinho, “Dynamics of Hydrogen in Silicon at Finite Temperatures from First Principles”, invited paper for the occasion of the 60th anniversary of Physica Status Solidi, Physica Status Solidi B 259, 2100670 (2022); <a href="10.1002/pssb.202100670" target="_blank" rel="noreferrer noopener">doi:10.1002/pssb.202100670</a> <strong>(Projeto: 2021.09643.CPCA.A2@HPC-UE)</strong></li> <li>T. O. Abdul Fattah, V. P. Markevich, J. A. De Guzman, J. Coutinho, N. V. Abrosimov, J. Binns, I. Crowe, M. P. Halsall, A. R. Peaker, “Deep-level defects in Ga-doped silicon crystals”, AIP Conference Proceedings 2826, 110001 (2023), SiliconPV-2022 conference, (March, Konstanz, Germany, 2022); <a href="doi:10.1063/5.0140826">doi:10.1063/5.0140826</a> <strong>(Projeto: 2021.09643.CPCA.A2@HPC-UE)</strong></li> <li>T. O. Abdul Fattah, V. P. Markevich, J. A. T. De Guzman, J. Coutinho, S. B. Lastovskii, I. D. Hawkins, I. F. Crowe, M. P. Halsall, A. R. Peaker, “Interactions of Hydrogen Atoms with Acceptor-Dioxygen Complexes in Czochralski-Grown Silicon”, Physica Status Solidi A 219, 2200176 (2022); <a href="10.1002/pssa.202200176" target="_blank" rel="noreferrer noopener">doi:10.1002/pssa.202200176</a> <strong>(Projeto: 2021.09643.CPCA.A2@HPC-UE)</strong></li> <li>J. Coutinho, D. Gomes, V. J. B. Torres, T. O. Abdul Fattah, V. P. Markevich, and A. R. Peaker, “Theory of reactions between hydrogen and group-III acceptors in silicon”, Physical Review B 108, 014111 (2023); <a href="10.1103/PhysRevB.108.014111" target="_blank" rel="noreferrer noopener">doi:10.1103/PhysRevB.108.014111</a> <strong>(Projeto: 2021.09643.CPCA.A2@HPC-UE)</strong></li> <li>Jeyabalan S.R. et al “Nonlinear large-scale perturbations of a steady thermal convective dynamo regimes in a plane layer of electrically conducting fluid rotating about the vertical axis”. Mathematics, Vol. 10, Iss. 16, 2957, 2022. Special issue “Numerical Analysis and Scientific Computing II”, section “Computational and Applied Mathematics”. <a href="10.3390/math10162957" target="_blank" rel="noreferrer noopener">DOI:10.3390/math10162957</a> <strong>(Projeto: 2021.09815.CPCA.A2@HPC-UE)</strong></li> <li>R. Chertovskih et al. “”Optimal control of nonlocal continuity equations: numerical solution”. Applied Mathematics & Optimization, Vol. 88, article no. 86, 2023. <a href="10.1007/s00245-023-10062-w" target="_blank" rel="noreferrer noopener">DOI:10.1007/s00245-023-10062-w</a> <strong>(Projeto: 2021.09815.CPCA.A2@HPC-UE)</strong></li> <li>R. Chertovskih et al. “Optimal control of distributed ensembles with application to Bloch equations”. IEEE Control Systems Letters, Vol. 7, pp. 2059-2064, 2023. <a href="10.1109/LCSYS.2023.3284205" target="_blank" rel="noreferrer noopener">DOI:10.1109/LCSYS.2023.3284205</a> <strong>(Projeto: 2021.09815.CPCA.A2@HPC-UE)</strong></li> <li>Moreno, M. J.; Filipe, H. A. L.; Cunha, S. V. P.; Ramos, C. V.; Martins, P. A. T.; Abel, B.; Loura, L. M. S.; Ambudkar, S. V., Interaction of a Homologous Series of Amphiphiles with P-glycoprotein in a Membrane Environment – Contributions of Polar and Non-Polar Interactions. Pharmaceutics 2023, 15 (1), 174. <a href="https://doi.org/10.3390/pharmaceutics15010174" target="_blank" rel="noreferrer noopener">https://doi.org/10.3390/pharmaceutics15010174</a> <strong>(Projeto: 2021.09741.CPCA.A2@LCA-UC)</strong></li> <li>Oliveira, A. C.; Filipe, H. A. L.; Loura, L. M. S., Fluorescent Probes cis- and trans-Parinaric Acids in Fluid and Gel Lipid Bilayers: A Molecular Dynamics Study. Molecules 2023, 28 (5), 2241.<a href="https://doi.org/10.3390/molecules28052241" target="_blank" rel="noreferrer noopener"> https://doi.org/10.3390/molecules28052241</a> <strong>(Projeto: 2021.09741.CPCA.A2@LCA-UC)</strong></li> <li>Filipe, H. A. L.; Loura, L. M. S.; Moreno, M. 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Frontiers in Marine Science, 8: 675699. 2021.<a href="https://doi.org/10.3389/fmars.2021.675699" target="_blank" rel="noreferrer noopener">https://doi.org/10.3389/fmars.2021.675699</a> <strong>(Projeto: CPCA_A2_7255_2020<strong>@INCD</strong>)</strong></li> <li>França, S., V.F. Fonseca, S.E. Tanner, R.P. Vasconcelos, P. Reis-Santos, A. Maia, M. Ruano, I. Cardoso, S. Henriques, M.P. Pais, P. Brandão, A.C. Brito, P. Castellanos, P. Chainho, B. Quintella, L. Costa, M.J. Costa, J.L. Costa & H.N. Cabral. Historical data in the CoastNet Geoportal: documenting fish assemblages in Portuguese estuaries. Frontiers in Marine Science, 8: 685294. 2021. <a href="https://doi.org/10.3389/fmars.2021.685294" target="_blank" rel="noreferrer noopener">https://doi.org/10.3389/fmars.2021.685294</a> <strong>(Projeto: CPCA_A2_7255_2020<strong>@INCD</strong>)</strong></li> <li>Bonilla C.,Carcamo Hernandez AE, Goncalves J, Freitas FF, Morais AP and Pasechnik R. Collider signatures of vector-like fermions from a flavor symmetric 2HDM. 2021. <a href="https://arxiv.org/pdf/2107.14165.pdf" data-type="URL" data-id="https://arxiv.org/pdf/2107.14165.pdf" target="_blank" rel="noreferrer noopener">URL</a> <strong>@INCD</strong></li> <li>D. Quelhas, J. Carneiro, M. Lopes-Marques, J. Jaeken, E. Martins, J.F. Rocha, S.S. Teixeira Carla, C.R. Ferreira, S.F. Sousa, L. Azevedo, Assessing the effects of PMM2 variants on protein stability, Molecular Genetics and Metabolism, Volume 134, Issue 4, 2021, Pages 344-352, ISSN 1096-7192, <a href="https://doi.org/10.1016/j.ymgme.2021.11.002" target="_blank" rel="noreferrer noopener">https://doi.org/10.1016/j.ymgme.2021.11.002</a> <strong>@INCD</strong></li> <li>Serrano, C., Teixeira, C.S.S., Cooper, D.N. <em>et al.</em> Compensatory epistasis explored by molecular dynamics simulations. <em>Hum Genet</em> 140, 1329–1342 (2021). <a href="https://doi.org/10.1007/s00439-021-02307-x" target="_blank" rel="noreferrer noopener">https://doi.org/10.1007/s00439-021-02307-x</a><strong> Projetos CPCA/A00/7140/2020 e <strong>CPCA/A00/7145/2020</strong>@INCD</strong></li> <li>Vieira, T.F.; Martins, F.G.; Moreira, J.P.; Barbosa, T.; Sousa, S.F. In Silico Identification of Possible Inhibitors for Protein Kinase B (PknB) of Mycobacterium tuberculosis. Molecules 2021, 26, 6162. <a href="https://doi.org/10.3390/molecules26206162" target="_blank" rel="noreferrer noopener">https://doi.org/10.3390/molecules26206162</a> <strong>Projetos CPCA/A00/7140/2020 e <strong>CPCA/A00/7145/2020</strong>@INCD</strong></li> <li>Santos-Pereira C,Rocha J. F., Fernandes H. S., Rodrigues L. R., Côrte-Real M., Sousa S. F., The milk-derived lactoferrin inhibits V-ATPase activity by targeting its V1 domain, International Journal of Biological Macromolecules, Volume 186, 2021, Pages 54-70, ISSN 0141-8130, <a href="https://doi.org/10.1016/j.ijbiomac.2021.06.200" target="_blank" rel="noreferrer noopener">https://doi.org/10.1016/j.ijbiomac.2021.06.200</a> <strong>@INCD</strong></li> <li>Martins, F.G.; Melo, A.; Sousa, S.F. Identification of New Potential Inhibitors of Quorum Sensing through a Specialized Multi-Level Computational Approach. Molecules 2021, 26, 2600. <a href="https://doi.org/10.3390/molecules26092600" target="_blank" rel="noreferrer noopener">https://doi.org/10.3390/molecules26092600</a><strong> Projetos CPCA/A00/7140/2020 e <strong>CPCA/A00/7145/2020</strong>@INCD</strong></li> <li>Teixeira MAL, Nygren A, Ravara A, Vieira PE, Hernández JC, Costa FO (2021) The small polychaete Platynereis dumerilii revealed as a large species complex with fourteen MOTUs in European marine habitats. ARPHA Conference Abstracts 4: e64937. <a href="https://doi.org/10.3897/aca.4.e64937" target="_blank" rel="noreferrer noopener">https://doi.org/10.3897/aca.4.e64937</a> <strong>(Projeto: CPCA_A1_7359_2020<strong>@INCD</strong>)</strong></li> <li>Parracho J. O., Thomaz L. A., Távora L. M. N., . Assunção P. A. A and S Faria . M. M., “Cross-modality Lossless Compression of PET-CT Images,” <em>2021 Telecoms Conference (ConfTELE)</em>, 2021, pp. 1-6, <a href="https://ieeexplore.ieee.org/document/9435467" data-type="URL" data-id="https://ieeexplore.ieee.org/document/9435467" target="_blank" rel="noreferrer noopener">doi: 10.1109/ConfTELE50222.2021.9435467</a> <strong>(Projeto: CPCA_A2_6986_2020<strong>@INCD</strong>)</strong></li> </ul> <div style="height:102px" aria-hidden="true" class="wp-block-spacer"></div> <h2 class="wp-block-heading has-text-align-center"><strong>Outras publicações </strong></h2> <div style="height:17px" aria-hidden="true" class="wp-block-spacer"></div> <h2 class="wp-block-heading"><mark style="background-color:rgba(0, 0, 0, 0)" class="has-inline-color has-vivid-green-cyan-color">2020</mark></h2> <ul class="wp-block-list"> <li>Pedro J., Ramôa B., Nóbrega J. 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