Git Notes

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<h1>Git Notes</h1> </header> </div>   <section id="page" class="main style1"> <div class="container"> <div class="box alt"></div> <div id="content" class="page-content"> <p>Here are some common git operations for which we often find ourselves searching.</p> <h2 id="workflow">Workflow</h2> <h3 id="checkout-a-remote-branch-develop-and-keep-it-linked-to-the-origin">Checkout a remote branch ‘develop’ and keep it linked to the origin</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git checkout <span class="nt">-t</span> origin/develop </code></pre></div></div> <p>It should report: “Branch develop set up to track remote branch develop from origin.”</p> <h3 id="list-all-branches-both-local-and-remote">List all branches (both local and remote)</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git branch <span class="nt">-a</span> </code></pre></div></div> <h3 id="list-local-branches-and-their-corresponding-upstream-remote-branches">List local branches and their corresponding upstream remote branches</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git branch <span class="nt">-vv</span> </code></pre></div></div> <h3 id="revert-local-changes-to-a-file-prior-to-commit">Revert local changes to a file (prior to commit)</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git checkout file </code></pre></div></div> <h3 id="revert-all-local-changes-to-the-current-subtree-prior-to-commit">Revert all local changes to the current subtree (prior to commit)</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git checkout <span class="nb">.</span> </code></pre></div></div> <h3 id="cute-hack-to-revert-all-local-changes-prior-to-commit">Cute hack to revert all local changes (prior to commit)</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git stash git stash drop </code></pre></div></div> <h3 id="undo-a-commit">Undo a commit</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git reset <span class="nt">--soft</span> HEAD^ </code></pre></div></div> <h3 id="undo-multiple-commits">Undo multiple commits</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git reset <span class="nt">--soft</span> HEAD@<span class="o">{</span>2<span class="o">}</span> </code></pre></div></div> <p>Where <code class="language-plaintext highlighter-rouge">2</code> is the number of commits to undo.</p> <h3 id="update-to-latest-head-preserving-local-changes-and-local-commits-on-top">Update to latest HEAD, preserving local changes and local commits on top</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git stash git pull <span class="nt">--rebase</span> git stash pop </code></pre></div></div> <h3 id="push-changes-on-master-to-origin">Push changes on master to origin</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git push origin master </code></pre></div></div> <h3 id="delete-untracked-files-and-directories">Delete untracked files and directories</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git clean <span class="nt">-df</span> </code></pre></div></div> <h3 id="interactively-stage-patches-from-changed-files">Interactively stage patches from changed file(s)</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git add <span class="nt">-p</span> &lt<span class="p">;</span>path&gt<span class="p">;</span> </code></pre></div></div> <h3 id="roll-back-the-last-commits-changes-to-a-particular-file">Roll back the last commit’s changes to a particular file</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git checkout HEAD@<span class="o">{</span>1<span class="o">}</span> <span class="nt">--</span> file </code></pre></div></div> <h2 id="branches">Branches</h2> <h3 id="branch-master-to-a-new-local-branch-new_branch">Branch master to a new local branch “new_branch”</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git checkout <span class="nt">-b</span> new_branch master </code></pre></div></div> <h3 id="push-local-branch-to-remote">Push local branch to remote</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git push <span class="nt">-u</span> origin new_branch </code></pre></div></div> <h3 id="make-the-current-local-branch-start-tracking-a-corresponding-remote-branch">Make the current local branch start tracking a corresponding remote branch</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git branch <span class="nt">--set-upstream-to</span> origin/new_branch </code></pre></div></div> <p>This is not necessary if you used <code class="language-plaintext highlighter-rouge">git push -u</code> as suggested above.</p> <h3 id="list-the-local-branches-that-have-already-been-merged-to-this-one">List the local branches that have already been merged to this one</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git branch <span class="nt">--merged</span> </code></pre></div></div> <h3 id="diff-a-file-between-two-branches">Diff a file between two branches</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git diff branch1 branch2 <span class="nt">--</span> file </code></pre></div></div> <h3 id="delete-a-branch-both-locally-and-remotely">Delete a branch both locally and remotely</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git branch <span class="nt">-rd</span> origin/branch_to_kill git branch <span class="nt">-d</span> branch_to_kill git push origin :branch_to_kill </code></pre></div></div> <h3 id="move-a-commit-from-bad_branch-to-good_branch">Move a commit from bad_branch to good_branch</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="c"># First cherry-pick the commit onto the correct branch:</span> git checkout good_branch git cherry-pick deadbeef <span class="c"># Then remove the commit from the bad branch:</span> git checkout bad_branch git rebase <span class="nt">-i</span> <span class="c"># Change the undesirable commit to "noop"</span> </code></pre></div></div> <p>For more on branching, see <a href="/develop/git/topic-branches">Git topic branches</a>.</p> <h3 id="rename-the-current-branch">Rename the current branch</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git branch <span class="nt">-m</span> <new branch name> </code></pre></div></div> <h2 id="git--svn">Git + SVN</h2> <h3 id="clone-an-svn-repository-to-a-local-git-repository">Clone an SVN repository to a local Git repository</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git svn clone <span class="nt">-s</span> http://svn.code.sf.net/p/jhotdraw/svn/ </code></pre></div></div> <h3 id="commit-and-push-changes-even-with-local-changes-in-the-working-copy">Commit and push changes, even with local changes in the working copy</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git commit git stash git svn dcommit git stash pop </code></pre></div></div> <h3 id="update-to-latest-trunk-preserving-local-changes-and-local-commits-on-top">Update to latest trunk, preserving local changes and local commits on top</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git stash git svn rebase git stash pop </code></pre></div></div> <h2 id="searching">Searching</h2> <h3 id="recursively-search-for-helloworldfile-and-display-the-most-recent-commit-modifying-it">Recursively search for HelloWorld.file (and display the most recent commit modifying it)</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git ls-tree <span class="nt">-r</span> HEAD | <span class="nb">grep </span>HelloWorld.file </code></pre></div></div> <h3 id="recursively-search-for-all-files-containing-the-phrase-import-helloworld">Recursively search for all files containing the phrase ‘import HelloWorld’</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git <span class="nb">grep</span> <span class="s1">'import HelloWorld'</span> </code></pre></div></div> <h3 id="recursively-search-for-all-files-in-any-topic-branch-containing-the-phrase-import-helloworld">Recursively search for all files <em>in any topic branch</em> containing the phrase ‘import HelloWorld’</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git <span class="nb">grep</span> <span class="s1">'import HelloWorld'</span> <span class="si">$(</span>git rev-list <span class="nt">--all</span> <span class="nt">--no-walk</span><span class="si">)</span> </code></pre></div></div> <h2 id="history">History</h2> <h3 id="display-a-log-with-colored-word-diffs">Display a log with colored word diffs</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git log <span class="nt">-p</span> <span class="nt">--color-words</span> </code></pre></div></div> <p>Add <code class="language-plaintext highlighter-rouge">-S</code> to <code class="language-plaintext highlighter-rouge">less</code> to virtually wrap long lines.</p> <h3 id="display-a-diff-with-colored-words-between-a-file-in-one-commit-and-a-file-in-another-commit">Display a diff with colored words between a file in one commit and a file in another commit</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git diff <commitA>:<file> <commitB>:<file> <span class="nt">--color-words</span> </code></pre></div></div> <p>Add <code class="language-plaintext highlighter-rouge">-S</code> to <code class="language-plaintext highlighter-rouge">less</code> to virtually wrap long lines.</p> <h3 id="display-all-contributing-authors-of-a-project-including-their-e-mail">Display all contributing authors of a project including their e-mail</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git log <span class="nt">--format</span><span class="o">=</span><span class="s1">'%aN <%ae&>'</span> | <span class="nb">sort</span> <span class="nt">-u</span> </code></pre></div></div> <p>Respects <code class="language-plaintext highlighter-rouge">.mailmap</code>.</p> <h3 id="viewing-the-history-for-a-single-file">Viewing the history for a single file</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git log <span class="nt">--follow</span> HelloWorld.file </code></pre></div></div> <p>This history is algorithmically calculated and must be carefully preserved.</p> <p>Simultaneous (within a single commit) significant changes + file renaming (including relocation) can prevent the algorithm from successfully tracing the file’s history, or cause it to begin tracing the wrong file.</p> <p>Keeping code changes separate from renames should prevent this confusion, but it is good practice to check <code class="language-plaintext highlighter-rouge">log --follow</code> before pushing to a remote repository.</p> <h3 id="see-commits-in-branch-b-not-present-in-branch-a">See commits in branch B not present in branch A</h3> <p>There are two main options. The first:</p> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git log A..B </code></pre></div></div> <p>will display the different commits in full git log format. NB: the <code class="language-plaintext highlighter-rouge">..</code> between commits is important to sure only the difference in commits is considered.</p> <p>The second:</p> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git cherry <span class="nt">-v</span> A B </code></pre></div></div> <p>will display a simple list of the different commits, one per line, with commit message and hash.</p> <h2 id="scripts">Scripts</h2> <p>There are some Git-related scripts available in the <a href="https://github.com/scijava/scijava-scripts">scijava-scripts</a> project.</p> <h3 id="list-information-about-all-remote-branches-including-last-author-commit-date-and-unmerged-commit-count">List information about all remote branches including last author, commit date and unmerged commit count</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="nv">$SCIJAVA</span>/bin/remote-branch-info.sh </code></pre></div></div> <h2 id="advanced-andor-dangerous">Advanced and/or dangerous</h2> <h3 id="create-a-repository-with-gw-permissions">Create a repository with g+w permissions</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git init <span class="nt">--shared</span><span class="o">=</span>group </code></pre></div></div> <p>Or for a bare repository:</p> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git init <span class="nt">--bare</span> <span class="nt">--shared</span><span class="o">=</span>group </code></pre></div></div> <p>(Bare repositories are meant for a remote server repository that all your coworkers push into and pull/fetch from.)</p> <h3 id="push-all-remote-branches-from-one-remote-eg-origin-to-another-eg-github">Push all remote branches from one remote (e.g., “origin”) to another (e.g., “github”)</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git push github <span class="si">$(</span>git <span class="k">for</span><span class="nt">-each-ref</span> refs/remotes/origin | <span class="se">\</span> <span class="nb">grep</span> <span class="nt">-v</span> HEAD | <span class="se">\</span> <span class="k">while </span><span class="nb">read </span>sha1 <span class="nb">type </span>ref <span class="k">do </span><span class="nb">echo</span> <span class="nv">$ref</span>:refs/heads/<span class="k">${</span><span class="nv">ref</span><span class="p">#refs/remotes/origin/</span><span class="k">}</span> <span class="k">done</span><span class="si">)</span> </code></pre></div></div> <h3 id="another-way-to-push-all-remote-branches-between-remotes">Another way to push all remote branches between remotes</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="nb">eval </span>git push github <span class="si">$(</span>git <span class="k">for</span><span class="nt">-each-ref</span> | <span class="se">\</span> <span class="nb">sed</span> <span class="nt">-n</span> <span class="s1">'s/.*\t$refs\/remotes\/origin\/\(.*$\)$/\1:refs\/heads\/\2/p'</span><span class="si">)</span> </code></pre></div></div> <h3 id="fully-garbage-collect-and-compact-the-repository-deletes-all-orphaned-refs">Fully garbage collect and compact the repository (deletes all orphaned refs!)</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git reset <span class="nt">--hard</span> git <span class="k">for</span><span class="nt">-each-ref</span> <span class="nt">--format</span><span class="o">=</span><span class="s2">"%(refname)"</span> refs/original/ | <span class="se">\</span> xargs <span class="nt">-n</span> 1 git update-ref <span class="nt">-d</span> git reflog expire <span class="nt">--expire</span><span class="o">=</span>now <span class="nt">--all</span> git gc <span class="nt">--aggressive</span> <span class="nt">--prune</span><span class="o">=</span>now </code></pre></div></div> <h2 id="rewriting-history">Rewriting history</h2> <h3 id="split-a-subdirectory-into-a-separate-git-repository">Split a subdirectory into a separate git repository</h3> <p>See these posts on Stack Overflow:</p> <ul> <li><a href="http://stackoverflow.com/questions/359424/detach-subdirectory-into-separate-git-repository">Detach subdirectory into separate Git repository</a></li> <li><a href="http://stackoverflow.com/questions/6638019/detach-subdirectory-that-was-renamed-into-a-new-repo">Detach subdirectory (that was renamed!) into a new repo</a></li> <li><a href="http://stackoverflow.com/questions/3910412/split-large-git-repository-into-many-smaller-ones">Split large Git repository into many smaller ones</a></li> </ul> <h3 id="throw-away-git-svn-id-metadata">Throw away git-svn-id metadata</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git filter-branch <span class="nt">--msg-filter</span> <span class="s1">' sed -e "/^git-svn-id:/d" '</span> </code></pre></div></div> <h3 id="combine-the-first-two-commits-of-a-git-repository">Combine the first two commits of a Git repository</h3> <p>See this post on Stack Overflow:</p> <ul> <li><a href="http://stackoverflow.com/questions/435646/how-do-i-combine-the-first-two-commits-of-a-git-repository">How do I combine the first two commits of a Git repository?</a></li> </ul> <h3 id="change-the-author-of-a-commit">Change the author of a commit</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git commit <span class="nt">--amend</span> <span class="nt">--author</span><span class="o">=</span><span class="s2">"Author Name"</span> </code></pre></div></div> <h3 id="change-the-author-of-many-commits">Change the author of many commits</h3> <p>See this post on Stack Overflow:</p> <ul> <li><a href="http://stackoverflow.com/questions/750172/how-do-i-change-the-author-of-a-commit-in-git">How do I change the author of a commit in git?</a></li> </ul> <h3 id="merge-multiple-repositories">Merge multiple repositories</h3> <p>See these posts on Stack Overflow:</p> <ul> <li><a href="http://stackoverflow.com/questions/277029/combining-multiple-git-repositories">Combining multiple git repositories</a></li> <li><a href="http://stackoverflow.com/questions/4039682/git-retroactively-introduce-several-merges">git: Retroactively introduce several merges</a></li> </ul> <h2 id="tutorials">Tutorials</h2> <h3 id="creating-a-shared-remote-repository">Creating a shared remote repository</h3> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>ssh you@server <span class="nb">mkdir </span>repos/remote.git <span class="nb">cd </span>repos/remote.git git <span class="nt">--bare</span> init <span class="nt">--shared</span><span class="o">=</span>group <span class="nb">logout cd</span> ~/local git remote add origin ssh://you@server/home/you/remote.git git push origin master git config branch.master.remote origin git config branch.master.merge refs/heads/master </code></pre></div></div> <p>Creates a bare remote repository at <a href="Ssh___server_home_you_remote.git"><code class="language-plaintext highlighter-rouge">ssh://server/home/you/remote.git</code></a> that tracks your local repository in <code class="language-plaintext highlighter-rouge">/home/you/local</code>. Adopted from <a href="http://toolmantim.com/articles/setting_up_a_new_remote_git_repository">Tim Lucas</a>.</p> <h3 id="displaying-a-filtered-set-of-commits">Displaying a filtered set of commits</h3> <p>Assume you want to see commits in branch <code class="language-plaintext highlighter-rouge">stephan</code>, but only those that are <u>not</u> part of the history of branch <code class="language-plaintext highlighter-rouge">saalfeld</code>:</p> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git log stephan ^saalfeld </code></pre></div></div> <p>More realistically, if you want to see all the commits which are in a topic branch, but not yet merged into master:</p> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git log <span class="nt">--all</span> ^master </code></pre></div></div> <p>If you want to see the changes which come from a topic branch which was merged in commit <code class="language-plaintext highlighter-rouge">deadbeef</code>, use this command line:</p> <div class="language-shell highlighter-rouge"><div class="highlight"><pre class="highlight"><code>git log deadbeef^..deadbeef^2 </code></pre></div></div> <p>Explanation: <code class="language-plaintext highlighter-rouge">deadbeef</code> is a merge commit, so its first parent (<code class="language-plaintext highlighter-rouge">deadbeef^</code>, can also be written as <code class="language-plaintext highlighter-rouge">deadbeef^1</code>) was the current <code class="language-plaintext highlighter-rouge">HEAD</code> when the merge was performed, and the second parent (<code class="language-plaintext highlighter-rouge">deadbeef^2</code>) is the tip of the branch which was merged. The argument <code class="language-plaintext highlighter-rouge">A..B</code> is short form of <code class="language-plaintext highlighter-rouge">^A B</code>, i.e. all commits reachable from <code class="language-plaintext highlighter-rouge">B</code> excluding those which are also reachable from <code class="language-plaintext highlighter-rouge">A</code>.</p> </div> </div> </section>  <section id="footer"> <ul class="icons"> <li><a href="https://forum.image.sc/tag/imagej" class="icon alt"><img src="/media/icons/image-sc.png" width="24" style="vertical-align: middle; margin-top: -10px"><span class="label">Forum</span></a></li> <li><a href="https://twitter.com/hashtag/ImageJ" class="icon brands alt fa-twitter"><span class="label">Twitter</span></a></li> <li><a href="https://github.com/imagej" class="icon brands alt fa-github"><span class="label">GitHub</span></a></li> </ul> <ul class="copyright"> <li>Design: <a href="http://html5up.net">HTML5 UP</a></li> </ul> </section>  <nav 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