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lvos-evaluation/evaluation_codalab.py at main · LingyiHongfd/lvos-evaluation · GitHub
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style="padding-right:16px">20</div><div data-line-number="21" class="react-line-number react-code-text" style="padding-right:16px">21</div><div data-line-number="22" class="react-line-number react-code-text" style="padding-right:16px">22</div><div data-line-number="23" class="react-line-number react-code-text" style="padding-right:16px">23</div><div data-line-number="24" class="react-line-number react-code-text" style="padding-right:16px">24</div><div data-line-number="25" class="react-line-number react-code-text" style="padding-right:16px">25</div><div data-line-number="26" class="react-line-number react-code-text" style="padding-right:16px">26</div><div data-line-number="27" class="react-line-number react-code-text" style="padding-right:16px">27</div><div data-line-number="28" class="react-line-number react-code-text" style="padding-right:16px">28</div><div data-line-number="29" class="react-line-number react-code-text" style="padding-right:16px">29</div><div data-line-number="30" 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style="padding-right:16px">39</div><div data-line-number="40" class="react-line-number react-code-text" style="padding-right:16px">40</div><div data-line-number="41" class="react-line-number react-code-text" style="padding-right:16px">41</div><div data-line-number="42" class="react-line-number react-code-text" style="padding-right:16px">42</div><div data-line-number="43" class="react-line-number react-code-text" style="padding-right:16px">43</div><div data-line-number="44" class="react-line-number react-code-text" style="padding-right:16px">44</div><div data-line-number="45" class="react-line-number react-code-text" style="padding-right:16px">45</div><div data-line-number="46" class="react-line-number react-code-text" style="padding-right:16px">46</div><div data-line-number="47" class="react-line-number react-code-text" style="padding-right:16px">47</div><div data-line-number="48" class="react-line-number react-code-text" style="padding-right:16px">48</div><div data-line-number="49" class="react-line-number react-code-text" style="padding-right:16px">49</div><div data-line-number="50" class="react-line-number react-code-text" style="padding-right:16px">50</div><div data-line-number="51" class="react-line-number react-code-text" style="padding-right:16px">51</div><div data-line-number="52" class="react-line-number react-code-text" style="padding-right:16px">52</div><div data-line-number="53" class="react-line-number react-code-text" style="padding-right:16px">53</div><div data-line-number="54" class="react-line-number react-code-text" style="padding-right:16px">54</div><div data-line-number="55" class="react-line-number react-code-text" style="padding-right:16px">55</div><div data-line-number="56" class="react-line-number react-code-text" style="padding-right:16px">56</div><div data-line-number="57" class="react-line-number react-code-text" style="padding-right:16px">57</div><div data-line-number="58" class="react-line-number react-code-text" style="padding-right:16px">58</div><div data-line-number="59" class="react-line-number react-code-text" style="padding-right:16px">59</div><div data-line-number="60" class="react-line-number react-code-text" style="padding-right:16px">60</div><div data-line-number="61" class="react-line-number react-code-text" style="padding-right:16px">61</div><div data-line-number="62" class="react-line-number react-code-text" style="padding-right:16px">62</div><div data-line-number="63" class="react-line-number react-code-text" style="padding-right:16px">63</div><div data-line-number="64" class="react-line-number react-code-text" style="padding-right:16px">64</div><div data-line-number="65" class="react-line-number react-code-text" style="padding-right:16px">65</div><div data-line-number="66" class="react-line-number react-code-text" style="padding-right:16px">66</div><div data-line-number="67" class="react-line-number react-code-text" style="padding-right:16px">67</div><div data-line-number="68" class="react-line-number react-code-text" style="padding-right:16px">68</div><div data-line-number="69" class="react-line-number react-code-text" style="padding-right:16px">69</div><div data-line-number="70" class="react-line-number react-code-text" style="padding-right:16px">70</div><div data-line-number="71" class="react-line-number react-code-text" style="padding-right:16px">71</div><div data-line-number="72" class="react-line-number react-code-text" style="padding-right:16px">72</div><div data-line-number="73" class="react-line-number react-code-text" style="padding-right:16px">73</div><div data-line-number="74" class="react-line-number react-code-text" style="padding-right:16px">74</div><div data-line-number="75" class="react-line-number react-code-text" style="padding-right:16px">75</div><div data-line-number="76" class="react-line-number react-code-text" style="padding-right:16px">76</div><div data-line-number="77" class="react-line-number react-code-text" style="padding-right:16px">77</div><div data-line-number="78" class="react-line-number react-code-text" style="padding-right:16px">78</div><div data-line-number="79" class="react-line-number react-code-text" style="padding-right:16px">79</div><div data-line-number="80" class="react-line-number react-code-text" style="padding-right:16px">80</div><div data-line-number="81" class="react-line-number react-code-text" style="padding-right:16px">81</div><div data-line-number="82" class="react-line-number react-code-text" style="padding-right:16px">82</div><div data-line-number="83" class="react-line-number react-code-text" style="padding-right:16px">83</div><div data-line-number="84" class="react-line-number react-code-text" style="padding-right:16px">84</div><div data-line-number="85" class="react-line-number react-code-text" style="padding-right:16px">85</div><div data-line-number="86" class="react-line-number react-code-text" style="padding-right:16px">86</div><div data-line-number="87" class="react-line-number react-code-text" style="padding-right:16px">87</div><div data-line-number="88" class="react-line-number react-code-text" style="padding-right:16px">88</div><div data-line-number="89" class="react-line-number react-code-text" style="padding-right:16px">89</div><div data-line-number="90" class="react-line-number react-code-text" style="padding-right:16px">90</div><div data-line-number="91" class="react-line-number react-code-text" style="padding-right:16px">91</div><div data-line-number="92" class="react-line-number react-code-text" style="padding-right:16px">92</div><div data-line-number="93" class="react-line-number react-code-text" style="padding-right:16px">93</div><div data-line-number="94" class="react-line-number react-code-text" style="padding-right:16px">94</div><div data-line-number="95" class="react-line-number react-code-text" style="padding-right:16px">95</div><div data-line-number="96" class="react-line-number react-code-text" style="padding-right:16px">96</div><div data-line-number="97" class="react-line-number react-code-text" style="padding-right:16px">97</div><div data-line-number="98" class="react-line-number react-code-text" style="padding-right:16px">98</div><div data-line-number="99" class="react-line-number react-code-text" style="padding-right:16px">99</div><div data-line-number="100" class="react-line-number react-code-text" style="padding-right:16px">100</div><div data-line-number="101" class="react-line-number react-code-text" style="padding-right:16px">101</div><div data-line-number="102" class="react-line-number react-code-text" style="padding-right:16px">102</div><div data-line-number="103" class="react-line-number react-code-text" style="padding-right:16px">103</div><div data-line-number="104" class="react-line-number react-code-text" style="padding-right:16px">104</div><div data-line-number="105" class="react-line-number react-code-text" style="padding-right:16px">105</div><div data-line-number="106" class="react-line-number react-code-text" style="padding-right:16px">106</div><div data-line-number="107" class="react-line-number react-code-text" style="padding-right:16px">107</div><div data-line-number="108" class="react-line-number react-code-text" style="padding-right:16px">108</div><div data-line-number="109" class="react-line-number react-code-text" style="padding-right:16px">109</div><div data-line-number="110" class="react-line-number react-code-text" style="padding-right:16px">110</div><div data-line-number="111" class="react-line-number react-code-text" style="padding-right:16px">111</div><div data-line-number="112" class="react-line-number react-code-text" style="padding-right:16px">112</div><div data-line-number="113" class="react-line-number react-code-text" style="padding-right:16px">113</div><div data-line-number="114" class="react-line-number react-code-text" style="padding-right:16px">114</div><div data-line-number="115" class="react-line-number react-code-text" style="padding-right:16px">115</div><div data-line-number="116" class="react-line-number react-code-text" style="padding-right:16px">116</div><div data-line-number="117" class="react-line-number react-code-text" style="padding-right:16px">117</div><div data-line-number="118" class="react-line-number react-code-text" style="padding-right:16px">118</div><div data-line-number="119" class="react-line-number react-code-text" style="padding-right:16px">119</div><div data-line-number="120" class="react-line-number react-code-text" style="padding-right:16px">120</div><div data-line-number="121" class="react-line-number react-code-text" style="padding-right:16px">121</div><div data-line-number="122" class="react-line-number react-code-text" style="padding-right:16px">122</div><div data-line-number="123" class="react-line-number react-code-text" style="padding-right:16px">123</div><div data-line-number="124" class="react-line-number react-code-text" style="padding-right:16px">124</div><div data-line-number="125" class="react-line-number react-code-text" style="padding-right:16px">125</div><div data-line-number="126" class="react-line-number react-code-text" style="padding-right:16px">126</div><div data-line-number="127" class="react-line-number react-code-text" style="padding-right:16px">127</div><div data-line-number="128" class="react-line-number react-code-text" style="padding-right:16px">128</div><div data-line-number="129" class="react-line-number react-code-text" style="padding-right:16px">129</div><div data-line-number="130" class="react-line-number react-code-text" style="padding-right:16px">130</div><div data-line-number="131" class="react-line-number react-code-text" style="padding-right:16px">131</div><div data-line-number="132" class="react-line-number react-code-text" style="padding-right:16px">132</div><div data-line-number="133" class="react-line-number react-code-text" style="padding-right:16px">133</div><div data-line-number="134" class="react-line-number react-code-text" style="padding-right:16px">134</div><div data-line-number="135" class="react-line-number react-code-text" style="padding-right:16px">135</div><div data-line-number="136" class="react-line-number react-code-text" style="padding-right:16px">136</div><div data-line-number="137" class="react-line-number react-code-text" style="padding-right:16px">137</div><div data-line-number="138" class="react-line-number react-code-text" style="padding-right:16px">138</div><div data-line-number="139" class="react-line-number react-code-text" style="padding-right:16px">139</div><div data-line-number="140" class="react-line-number react-code-text" style="padding-right:16px">140</div><div data-line-number="141" class="react-line-number react-code-text" style="padding-right:16px">141</div><div data-line-number="142" class="react-line-number react-code-text" style="padding-right:16px">142</div><div data-line-number="143" class="react-line-number react-code-text" style="padding-right:16px">143</div><div data-line-number="144" class="react-line-number react-code-text" style="padding-right:16px">144</div><div data-line-number="145" class="react-line-number react-code-text" style="padding-right:16px">145</div><div data-line-number="146" class="react-line-number react-code-text" style="padding-right:16px">146</div><div data-line-number="147" class="react-line-number react-code-text" style="padding-right:16px">147</div><div data-line-number="148" class="react-line-number react-code-text" style="padding-right:16px">148</div><div data-line-number="149" class="react-line-number react-code-text" style="padding-right:16px">149</div><div data-line-number="150" class="react-line-number react-code-text" style="padding-right:16px">150</div><div data-line-number="151" class="react-line-number react-code-text" style="padding-right:16px">151</div><div data-line-number="152" class="react-line-number react-code-text" style="padding-right:16px">152</div><div data-line-number="153" class="react-line-number react-code-text" style="padding-right:16px">153</div><div data-line-number="154" class="react-line-number react-code-text" style="padding-right:16px">154</div><div data-line-number="155" class="react-line-number react-code-text" style="padding-right:16px">155</div><div data-line-number="156" class="react-line-number react-code-text" style="padding-right:16px">156</div><div data-line-number="157" class="react-line-number react-code-text" style="padding-right:16px">157</div></div><div class="react-code-lines"><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC1" class="react-file-line html-div" data-testid="code-cell" data-line-number="1" style="position:relative"><span class="pl-c">#!/usr/bin/env python</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC2" class="react-file-line html-div" data-testid="code-cell" data-line-number="2" style="position:relative"><span class="pl-k">from</span> <span class="pl-s1">ast</span> <span class="pl-k">import</span> <span class="pl-s1">arg</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC3" class="react-file-line html-div" data-testid="code-cell" data-line-number="3" style="position:relative"><span class="pl-k">import</span> <span class="pl-s1">os</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC4" class="react-file-line html-div" data-testid="code-cell" data-line-number="4" style="position:relative"><span class="pl-k">import</span> <span class="pl-s1">sys</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC5" class="react-file-line html-div" data-testid="code-cell" data-line-number="5" style="position:relative"><span class="pl-k">from</span> <span class="pl-s1">time</span> <span class="pl-k">import</span> <span class="pl-s1">time</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC6" class="react-file-line html-div" data-testid="code-cell" data-line-number="6" style="position:relative"><span class="pl-k">import</span> <span class="pl-s1">argparse</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC7" class="react-file-line html-div" data-testid="code-cell" data-line-number="7" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC8" class="react-file-line html-div" data-testid="code-cell" data-line-number="8" style="position:relative"><span class="pl-k">import</span> <span class="pl-s1">numpy</span> <span class="pl-k">as</span> <span class="pl-s1">np</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC9" class="react-file-line html-div" data-testid="code-cell" data-line-number="9" style="position:relative"><span class="pl-k">import</span> <span class="pl-s1">pandas</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC10" class="react-file-line html-div" data-testid="code-cell" data-line-number="10" style="position:relative"><span class="pl-k">from</span> <span class="pl-s1">lvos</span>.<span class="pl-s1">evaluation_mp</span> <span class="pl-k">import</span> <span class="pl-v">LVOSEvaluation</span> <span class="pl-k">as</span> <span class="pl-v">LVOSEvaluation_MP</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC11" class="react-file-line html-div" data-testid="code-cell" data-line-number="11" style="position:relative"><span class="pl-k">from</span> <span class="pl-s1">lvos</span>.<span class="pl-s1">evaluation</span> <span class="pl-k">import</span> <span class="pl-v">LVOSEvaluation</span> <span class="pl-k">as</span> <span class="pl-v">LVOSEvaluation_SP</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC12" class="react-file-line html-div" data-testid="code-cell" data-line-number="12" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC13" class="react-file-line html-div" data-testid="code-cell" data-line-number="13" style="position:relative"><span class="pl-s1">task</span> <span class="pl-c1">=</span> <span class="pl-s">"semi-supervised"</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC14" class="react-file-line html-div" data-testid="code-cell" data-line-number="14" style="position:relative"><span class="pl-s1">gt_set</span> <span class="pl-c1">=</span> <span class="pl-s">"test"</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC15" class="react-file-line html-div" data-testid="code-cell" data-line-number="15" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC16" class="react-file-line html-div" data-testid="code-cell" data-line-number="16" style="position:relative"><span class="pl-s1">time_start</span> <span class="pl-c1">=</span> <span class="pl-en">time</span>()</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC17" class="react-file-line html-div" data-testid="code-cell" data-line-number="17" style="position:relative"><span class="pl-c"># as per the metadata file, input and output directories are the arguments</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC18" class="react-file-line html-div" data-testid="code-cell" data-line-number="18" style="position:relative"><span class="pl-k">if</span> <span class="pl-en">len</span>(<span class="pl-s1">sys</span>.<span class="pl-s1">argv</span>) <span class="pl-c1"><</span> <span class="pl-c1">3</span>:</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC19" class="react-file-line html-div" data-testid="code-cell" data-line-number="19" style="position:relative"> <span class="pl-s1">input_dir</span> <span class="pl-c1">=</span> <span class="pl-s">"input_dir"</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC20" class="react-file-line html-div" data-testid="code-cell" data-line-number="20" style="position:relative"> <span class="pl-s1">output_dir</span> <span class="pl-c1">=</span> <span class="pl-s">"output_dir"</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC21" class="react-file-line html-div" data-testid="code-cell" data-line-number="21" style="position:relative"> <span class="pl-s1">debug</span> <span class="pl-c1">=</span> <span class="pl-c1">True</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC22" class="react-file-line html-div" data-testid="code-cell" data-line-number="22" style="position:relative"><span class="pl-k">else</span>:</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC23" class="react-file-line html-div" data-testid="code-cell" data-line-number="23" style="position:relative"> [<span class="pl-s1">_</span>, <span class="pl-s1">input_dir</span>, <span class="pl-s1">output_dir</span>] <span class="pl-c1">=</span> <span class="pl-s1">sys</span>.<span class="pl-s1">argv</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC24" class="react-file-line html-div" data-testid="code-cell" data-line-number="24" style="position:relative"> <span class="pl-s1">debug</span> <span class="pl-c1">=</span> <span class="pl-c1">False</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC25" class="react-file-line html-div" data-testid="code-cell" data-line-number="25" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC26" class="react-file-line html-div" data-testid="code-cell" data-line-number="26" style="position:relative"><span class="pl-c"># unzipped submission data is always in the 'res' subdirectory</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC27" class="react-file-line html-div" data-testid="code-cell" data-line-number="27" style="position:relative"><span class="pl-c"># https://github.com/codalab/codalab-competitions/wiki/User_Building-a-Scoring-Program-for-a-Competition#directory-structure-for-submissions</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC28" class="react-file-line html-div" data-testid="code-cell" data-line-number="28" style="position:relative"><span class="pl-s1">submission_path</span> <span class="pl-c1">=</span> <span class="pl-s1">os</span>.<span class="pl-s1">path</span>.<span class="pl-en">join</span>(<span class="pl-s1">input_dir</span>, <span class="pl-s">"res"</span>, <span class="pl-s">"Annotations"</span>)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC29" class="react-file-line html-div" data-testid="code-cell" data-line-number="29" style="position:relative"><span class="pl-k">if</span> <span class="pl-c1">not</span> <span class="pl-s1">os</span>.<span class="pl-s1">path</span>.<span class="pl-en">exists</span>(<span class="pl-s1">submission_path</span>):</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC30" class="react-file-line html-div" data-testid="code-cell" data-line-number="30" style="position:relative"> <span class="pl-s1">sys</span>.<span class="pl-en">exit</span>(<span class="pl-s">"Could not find submission file {0}"</span>.<span class="pl-en">format</span>(<span class="pl-s1">submission_path</span>))</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC31" class="react-file-line html-div" data-testid="code-cell" data-line-number="31" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC32" class="react-file-line html-div" data-testid="code-cell" data-line-number="32" style="position:relative"><span class="pl-c"># unzipped reference data is always in the 'ref' subdirectory</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC33" class="react-file-line html-div" data-testid="code-cell" data-line-number="33" style="position:relative"><span class="pl-c"># https://github.com/codalab/codalab-competitions/wiki/User_Building-a-Scoring-Program-for-a-Competition#directory-structure-for-submissions</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC34" class="react-file-line html-div" data-testid="code-cell" data-line-number="34" style="position:relative"><span class="pl-s1">gt_path</span> <span class="pl-c1">=</span> <span class="pl-s1">os</span>.<span class="pl-s1">path</span>.<span class="pl-en">join</span>(<span class="pl-s1">input_dir</span>, <span class="pl-s">"ref"</span>)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC35" class="react-file-line html-div" data-testid="code-cell" data-line-number="35" style="position:relative"><span class="pl-k">if</span> <span class="pl-c1">not</span> <span class="pl-s1">os</span>.<span class="pl-s1">path</span>.<span class="pl-en">exists</span>(<span class="pl-s1">gt_path</span>):</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC36" class="react-file-line html-div" data-testid="code-cell" data-line-number="36" style="position:relative"> <span class="pl-s1">sys</span>.<span class="pl-en">exit</span>(<span class="pl-s">"Could not find GT file {0}"</span>.<span class="pl-en">format</span>(<span class="pl-s1">gt_path</span>))</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC37" class="react-file-line html-div" data-testid="code-cell" data-line-number="37" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC38" class="react-file-line html-div" data-testid="code-cell" data-line-number="38" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC39" class="react-file-line html-div" data-testid="code-cell" data-line-number="39" style="position:relative"><span class="pl-c"># Create dataset</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC40" class="react-file-line html-div" data-testid="code-cell" data-line-number="40" style="position:relative"><span class="pl-c"># dataset_eval = LVOSEvaluation_SP(lvos_root=gt_path, gt_set=gt_set, task=task, codalab=True)</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC41" class="react-file-line html-div" data-testid="code-cell" data-line-number="41" style="position:relative"><span class="pl-s1">dataset_eval</span> <span class="pl-c1">=</span> <span class="pl-v">LVOSEvaluation_MP</span>(</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC42" class="react-file-line html-div" data-testid="code-cell" data-line-number="42" style="position:relative"> <span class="pl-s1">lvos_root</span><span class="pl-c1">=</span><span class="pl-s1">gt_path</span>, <span class="pl-s1">gt_set</span><span class="pl-c1">=</span><span class="pl-s1">gt_set</span>, <span class="pl-s1">task</span><span class="pl-c1">=</span><span class="pl-s1">task</span>, <span class="pl-s1">codalab</span><span class="pl-c1">=</span><span class="pl-c1">True</span>, <span class="pl-s1">mp_procs</span><span class="pl-c1">=</span><span class="pl-c1">4</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC43" class="react-file-line html-div" data-testid="code-cell" data-line-number="43" style="position:relative">)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC44" class="react-file-line html-div" data-testid="code-cell" data-line-number="44" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC45" class="react-file-line html-div" data-testid="code-cell" data-line-number="45" style="position:relative"><span class="pl-c"># Check directory structure</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC46" class="react-file-line html-div" data-testid="code-cell" data-line-number="46" style="position:relative"><span class="pl-s1">res_subfolders</span> <span class="pl-c1">=</span> <span class="pl-s1">os</span>.<span class="pl-en">listdir</span>(<span class="pl-s1">submission_path</span>)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC47" class="react-file-line html-div" data-testid="code-cell" data-line-number="47" style="position:relative"><span class="pl-s1">sys</span>.<span class="pl-s1">stdout</span>.<span class="pl-en">write</span>(<span class="pl-s1">submission_path</span>)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC48" class="react-file-line html-div" data-testid="code-cell" data-line-number="48" style="position:relative"><span class="pl-k">if</span> <span class="pl-en">len</span>(<span class="pl-s1">res_subfolders</span>) <span class="pl-c1">==</span> <span class="pl-c1">1</span>:</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC49" class="react-file-line html-div" data-testid="code-cell" data-line-number="49" style="position:relative"> <span class="pl-s1">sys</span>.<span class="pl-s1">stdout</span>.<span class="pl-en">write</span>(</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC50" class="react-file-line html-div" data-testid="code-cell" data-line-number="50" style="position:relative"> <span class="pl-s">"Incorrect folder structure, the folders of the sequences have to be placed directly inside the "</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC51" class="react-file-line html-div" data-testid="code-cell" data-line-number="51" style="position:relative"> <span class="pl-s">"zip.<span class="pl-cce">\n</span>Inside every folder of the sequences there must be an indexed PNG file for every frame.<span class="pl-cce">\n</span>"</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC52" class="react-file-line html-div" data-testid="code-cell" data-line-number="52" style="position:relative"> <span class="pl-s">"The indexes have to match with the initial frame.<span class="pl-cce">\n</span>"</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC53" class="react-file-line html-div" data-testid="code-cell" data-line-number="53" style="position:relative"> )</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC54" class="react-file-line html-div" data-testid="code-cell" data-line-number="54" style="position:relative"> <span class="pl-s1">sys</span>.<span class="pl-en">exit</span>()</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC55" class="react-file-line html-div" data-testid="code-cell" data-line-number="55" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC56" class="react-file-line html-div" data-testid="code-cell" data-line-number="56" style="position:relative"><span class="pl-c"># Check that all sequences are there</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC57" class="react-file-line html-div" data-testid="code-cell" data-line-number="57" style="position:relative"><span class="pl-s1">missing</span> <span class="pl-c1">=</span> <span class="pl-c1">False</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC58" class="react-file-line html-div" data-testid="code-cell" data-line-number="58" style="position:relative"><span class="pl-k">for</span> <span class="pl-s1">seq</span> <span class="pl-c1">in</span> <span class="pl-s1">dataset_eval</span>.<span class="pl-s1">dataset</span>.<span class="pl-en">get_sequences</span>():</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC59" class="react-file-line html-div" data-testid="code-cell" data-line-number="59" style="position:relative"> <span class="pl-k">if</span> <span class="pl-s1">seq</span> <span class="pl-c1">not</span> <span class="pl-c1">in</span> <span class="pl-s1">res_subfolders</span>:</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC60" class="react-file-line html-div" data-testid="code-cell" data-line-number="60" style="position:relative"> <span class="pl-s1">sys</span>.<span class="pl-s1">stdout</span>.<span class="pl-en">write</span>(<span class="pl-s1">seq</span> <span class="pl-c1">+</span> <span class="pl-s">" sequence is missing.<span class="pl-cce">\n</span>"</span>)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC61" class="react-file-line html-div" data-testid="code-cell" data-line-number="61" style="position:relative"> <span class="pl-s1">missing</span> <span class="pl-c1">=</span> <span class="pl-c1">True</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC62" class="react-file-line html-div" data-testid="code-cell" data-line-number="62" style="position:relative"><span class="pl-k">if</span> <span class="pl-s1">missing</span>:</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC63" class="react-file-line html-div" data-testid="code-cell" data-line-number="63" style="position:relative"> <span class="pl-s1">sys</span>.<span class="pl-s1">stdout</span>.<span class="pl-en">write</span>(</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC64" class="react-file-line html-div" data-testid="code-cell" data-line-number="64" style="position:relative"> <span class="pl-s">"Verify also the folder structure, the folders of the sequences have to be placed directly inside "</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC65" class="react-file-line html-div" data-testid="code-cell" data-line-number="65" style="position:relative"> <span class="pl-s">"the zip.<span class="pl-cce">\n</span>Inside every folder of the sequences there must be an indexed PNG file for every frame.<span class="pl-cce">\n</span>"</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC66" class="react-file-line html-div" data-testid="code-cell" data-line-number="66" style="position:relative"> <span class="pl-s">"The indexes have to match with the initial frame.<span class="pl-cce">\n</span>"</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC67" class="react-file-line html-div" data-testid="code-cell" data-line-number="67" style="position:relative"> )</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC68" class="react-file-line html-div" data-testid="code-cell" data-line-number="68" style="position:relative"> <span class="pl-s1">sys</span>.<span class="pl-en">exit</span>()</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC69" class="react-file-line html-div" data-testid="code-cell" data-line-number="69" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC70" class="react-file-line html-div" data-testid="code-cell" data-line-number="70" style="position:relative"><span class="pl-s1">metrics_res</span>, <span class="pl-s1">metrics_res_seen</span>, <span class="pl-s1">metrics_res_unseen</span> <span class="pl-c1">=</span> <span class="pl-s1">dataset_eval</span>.<span class="pl-en">evaluate</span>(</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC71" class="react-file-line html-div" data-testid="code-cell" data-line-number="71" style="position:relative"> <span class="pl-s1">submission_path</span>, <span class="pl-s1">debug</span><span class="pl-c1">=</span><span class="pl-s1">debug</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC72" class="react-file-line html-div" data-testid="code-cell" data-line-number="72" style="position:relative">)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC73" class="react-file-line html-div" data-testid="code-cell" data-line-number="73" style="position:relative"><span class="pl-v">J</span>, <span class="pl-v">F</span>, <span class="pl-v">V</span> <span class="pl-c1">=</span> <span class="pl-s1">metrics_res</span>[<span class="pl-s">"J"</span>], <span class="pl-s1">metrics_res</span>[<span class="pl-s">"F"</span>], <span class="pl-s1">metrics_res</span>[<span class="pl-s">"V"</span>]</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC74" class="react-file-line html-div" data-testid="code-cell" data-line-number="74" style="position:relative"><span class="pl-v">J_seen</span>, <span class="pl-v">F_seen</span>, <span class="pl-v">V_seen</span> <span class="pl-c1">=</span> (</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC75" class="react-file-line html-div" data-testid="code-cell" data-line-number="75" style="position:relative"> <span class="pl-s1">metrics_res_seen</span>[<span class="pl-s">"J"</span>],</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC76" class="react-file-line html-div" data-testid="code-cell" data-line-number="76" style="position:relative"> <span class="pl-s1">metrics_res_seen</span>[<span class="pl-s">"F"</span>],</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC77" class="react-file-line html-div" data-testid="code-cell" data-line-number="77" style="position:relative"> <span class="pl-s1">metrics_res_seen</span>[<span class="pl-s">"V"</span>],</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC78" class="react-file-line html-div" data-testid="code-cell" data-line-number="78" style="position:relative">)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC79" class="react-file-line html-div" data-testid="code-cell" data-line-number="79" style="position:relative"><span class="pl-v">J_unseen</span>, <span class="pl-v">F_unseen</span>, <span class="pl-v">V_unseen</span> <span class="pl-c1">=</span> (</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC80" class="react-file-line html-div" data-testid="code-cell" data-line-number="80" style="position:relative"> <span class="pl-s1">metrics_res_unseen</span>[<span class="pl-s">"J"</span>],</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC81" class="react-file-line html-div" data-testid="code-cell" data-line-number="81" style="position:relative"> <span class="pl-s1">metrics_res_unseen</span>[<span class="pl-s">"F"</span>],</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC82" class="react-file-line html-div" data-testid="code-cell" data-line-number="82" style="position:relative"> <span class="pl-s1">metrics_res_unseen</span>[<span class="pl-s">"V"</span>],</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC83" class="react-file-line html-div" data-testid="code-cell" data-line-number="83" style="position:relative">)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC84" class="react-file-line html-div" data-testid="code-cell" data-line-number="84" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC85" class="react-file-line html-div" data-testid="code-cell" data-line-number="85" style="position:relative"><span class="pl-c"># Generate output to the stdout</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC86" class="react-file-line html-div" data-testid="code-cell" data-line-number="86" style="position:relative"><span class="pl-s1">seq_names</span> <span class="pl-c1">=</span> <span class="pl-en">list</span>(<span class="pl-v">J</span>[<span class="pl-s">"M_per_object"</span>].<span class="pl-en">keys</span>())</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC87" class="react-file-line html-div" data-testid="code-cell" data-line-number="87" style="position:relative"><span class="pl-k">if</span> <span class="pl-s1">gt_set</span> <span class="pl-c1">==</span> <span class="pl-s">"val"</span> <span class="pl-c1">or</span> <span class="pl-s1">gt_set</span> <span class="pl-c1">==</span> <span class="pl-s">"train"</span> <span class="pl-c1">or</span> <span class="pl-s1">gt_set</span> <span class="pl-c1">==</span> <span class="pl-s">"test"</span>:</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC88" class="react-file-line html-div" data-testid="code-cell" data-line-number="88" style="position:relative"> <span class="pl-s1">sys</span>.<span class="pl-s1">stdout</span>.<span class="pl-en">write</span>(<span class="pl-s">"----------------Global results in CSV---------------<span class="pl-cce">\n</span>"</span>)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC89" class="react-file-line html-div" data-testid="code-cell" data-line-number="89" style="position:relative"> <span class="pl-s1">g_measures</span> <span class="pl-c1">=</span> [</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC90" class="react-file-line html-div" data-testid="code-cell" data-line-number="90" style="position:relative"> <span class="pl-s">"Overall"</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC91" class="react-file-line html-div" data-testid="code-cell" data-line-number="91" style="position:relative"> <span class="pl-s">"J-Mean"</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC92" class="react-file-line html-div" data-testid="code-cell" data-line-number="92" style="position:relative"> <span class="pl-s">"J-seen-Mean"</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC93" class="react-file-line html-div" data-testid="code-cell" data-line-number="93" style="position:relative"> <span class="pl-s">"J-unseen-Mean"</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC94" class="react-file-line html-div" data-testid="code-cell" data-line-number="94" style="position:relative"> <span class="pl-s">"F-Mean"</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC95" class="react-file-line html-div" data-testid="code-cell" data-line-number="95" style="position:relative"> <span class="pl-s">"F-seen-Mean"</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC96" class="react-file-line html-div" data-testid="code-cell" data-line-number="96" style="position:relative"> <span class="pl-s">"F-unseen-Mean"</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC97" class="react-file-line html-div" data-testid="code-cell" data-line-number="97" style="position:relative"> <span class="pl-s">"V-Mean"</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC98" class="react-file-line html-div" data-testid="code-cell" data-line-number="98" style="position:relative"> <span class="pl-s">"V-seen-Mean"</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC99" class="react-file-line html-div" data-testid="code-cell" data-line-number="99" style="position:relative"> <span class="pl-s">"V-unseen-Mean"</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC100" class="react-file-line html-div" data-testid="code-cell" data-line-number="100" style="position:relative"> ]</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC101" class="react-file-line html-div" data-testid="code-cell" data-line-number="101" style="position:relative"> <span class="pl-s1">final_mean</span> <span class="pl-c1">=</span> (</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC102" class="react-file-line html-div" data-testid="code-cell" data-line-number="102" style="position:relative"> (<span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">J_seen</span>[<span class="pl-s">"M"</span>]) <span class="pl-c1">+</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">F_seen</span>[<span class="pl-s">"M"</span>]))</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC103" class="react-file-line html-div" data-testid="code-cell" data-line-number="103" style="position:relative"> <span class="pl-c1">+</span> (<span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">J_unseen</span>[<span class="pl-s">"M"</span>]) <span class="pl-c1">+</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">F_unseen</span>[<span class="pl-s">"M"</span>]))</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC104" class="react-file-line html-div" data-testid="code-cell" data-line-number="104" style="position:relative"> ) <span class="pl-c1">/</span> <span class="pl-c1">4.0</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC105" class="react-file-line html-div" data-testid="code-cell" data-line-number="105" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC106" class="react-file-line html-div" data-testid="code-cell" data-line-number="106" style="position:relative"> <span class="pl-s1">g_res</span> <span class="pl-c1">=</span> <span class="pl-s1">np</span>.<span class="pl-en">array</span>(</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC107" class="react-file-line html-div" data-testid="code-cell" data-line-number="107" style="position:relative"> [</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC108" class="react-file-line html-div" data-testid="code-cell" data-line-number="108" style="position:relative"> <span class="pl-s1">final_mean</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC109" class="react-file-line html-div" data-testid="code-cell" data-line-number="109" style="position:relative"> (<span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">J_seen</span>[<span class="pl-s">"M"</span>]) <span class="pl-c1">+</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">J_unseen</span>[<span class="pl-s">"M"</span>])) <span class="pl-c1">/</span> <span class="pl-c1">2</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC110" class="react-file-line html-div" data-testid="code-cell" data-line-number="110" style="position:relative"> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">J_seen</span>[<span class="pl-s">"M"</span>]),</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC111" class="react-file-line html-div" data-testid="code-cell" data-line-number="111" style="position:relative"> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">J_unseen</span>[<span class="pl-s">"M"</span>]),</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC112" class="react-file-line html-div" data-testid="code-cell" data-line-number="112" style="position:relative"> (<span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">F_seen</span>[<span class="pl-s">"M"</span>]) <span class="pl-c1">+</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">F_unseen</span>[<span class="pl-s">"M"</span>])) <span class="pl-c1">/</span> <span class="pl-c1">2</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC113" class="react-file-line html-div" data-testid="code-cell" data-line-number="113" style="position:relative"> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">F_seen</span>[<span class="pl-s">"M"</span>]),</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC114" class="react-file-line html-div" data-testid="code-cell" data-line-number="114" style="position:relative"> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">F_unseen</span>[<span class="pl-s">"M"</span>]),</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC115" class="react-file-line html-div" data-testid="code-cell" data-line-number="115" style="position:relative"> (<span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">V_seen</span>[<span class="pl-s">"M"</span>]) <span class="pl-c1">+</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">V_unseen</span>[<span class="pl-s">"M"</span>])) <span class="pl-c1">/</span> <span class="pl-c1">2</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC116" class="react-file-line html-div" data-testid="code-cell" data-line-number="116" style="position:relative"> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">V_seen</span>[<span class="pl-s">"M"</span>]),</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC117" class="react-file-line html-div" data-testid="code-cell" data-line-number="117" style="position:relative"> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">V_unseen</span>[<span class="pl-s">"M"</span>]),</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC118" class="react-file-line html-div" data-testid="code-cell" data-line-number="118" style="position:relative"> ]</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC119" class="react-file-line html-div" data-testid="code-cell" data-line-number="119" style="position:relative"> )</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC120" class="react-file-line html-div" data-testid="code-cell" data-line-number="120" style="position:relative"> <span class="pl-s1">table_g</span> <span class="pl-c1">=</span> <span class="pl-s1">pandas</span>.<span class="pl-v">DataFrame</span>(</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC121" class="react-file-line html-div" data-testid="code-cell" data-line-number="121" style="position:relative"> <span class="pl-s1">data</span><span class="pl-c1">=</span><span class="pl-s1">np</span>.<span class="pl-en">reshape</span>(<span class="pl-s1">g_res</span>, [<span class="pl-c1">1</span>, <span class="pl-en">len</span>(<span class="pl-s1">g_res</span>)]), <span class="pl-s1">columns</span><span class="pl-c1">=</span><span class="pl-s1">g_measures</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC122" class="react-file-line html-div" data-testid="code-cell" data-line-number="122" style="position:relative"> )</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC123" class="react-file-line html-div" data-testid="code-cell" data-line-number="123" style="position:relative"> <span class="pl-s1">table_g</span>.<span class="pl-en">to_csv</span>(<span class="pl-s1">sys</span>.<span class="pl-s1">stdout</span>, <span class="pl-s1">index</span><span class="pl-c1">=</span><span class="pl-c1">False</span>, <span class="pl-s1">float_format</span><span class="pl-c1">=</span><span class="pl-s">"%0.3f"</span>)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC124" class="react-file-line html-div" data-testid="code-cell" data-line-number="124" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC125" class="react-file-line html-div" data-testid="code-cell" data-line-number="125" style="position:relative"> <span class="pl-s1">sys</span>.<span class="pl-s1">stdout</span>.<span class="pl-en">write</span>(<span class="pl-s">"<span class="pl-cce">\n</span><span class="pl-cce">\n</span>------------Per sequence results in CSV-------------<span class="pl-cce">\n</span>"</span>)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC126" class="react-file-line html-div" data-testid="code-cell" data-line-number="126" style="position:relative"> <span class="pl-s1">seq_measures</span> <span class="pl-c1">=</span> [<span class="pl-s">"Sequence"</span>, <span class="pl-s">"J-Mean"</span>, <span class="pl-s">"F-Mean"</span>]</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC127" class="react-file-line html-div" data-testid="code-cell" data-line-number="127" style="position:relative"> <span class="pl-s1">seq_measures</span> <span class="pl-c1">=</span> [<span class="pl-s">"Sequence"</span>, <span class="pl-s">"J-Mean"</span>, <span class="pl-s">"F-Mean"</span>, <span class="pl-s">"V-Mean"</span>]</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC128" class="react-file-line html-div" data-testid="code-cell" data-line-number="128" style="position:relative"> <span class="pl-v">J_per_object</span> <span class="pl-c1">=</span> [<span class="pl-v">J</span>[<span class="pl-s">"M_per_object"</span>][<span class="pl-s1">x</span>] <span class="pl-k">for</span> <span class="pl-s1">x</span> <span class="pl-c1">in</span> <span class="pl-s1">seq_names</span>]</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC129" class="react-file-line html-div" data-testid="code-cell" data-line-number="129" style="position:relative"> <span class="pl-v">F_per_object</span> <span class="pl-c1">=</span> [<span class="pl-v">F</span>[<span class="pl-s">"M_per_object"</span>][<span class="pl-s1">x</span>] <span class="pl-k">for</span> <span class="pl-s1">x</span> <span class="pl-c1">in</span> <span class="pl-s1">seq_names</span>]</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC130" class="react-file-line html-div" data-testid="code-cell" data-line-number="130" style="position:relative"> <span class="pl-v">V_per_object</span> <span class="pl-c1">=</span> [<span class="pl-v">V</span>[<span class="pl-s">"M_per_object"</span>][<span class="pl-s1">x</span>] <span class="pl-k">for</span> <span class="pl-s1">x</span> <span class="pl-c1">in</span> <span class="pl-s1">seq_names</span>]</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC131" class="react-file-line html-div" data-testid="code-cell" data-line-number="131" style="position:relative"> <span class="pl-s1">table_seq</span> <span class="pl-c1">=</span> <span class="pl-s1">pandas</span>.<span class="pl-v">DataFrame</span>(</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC132" class="react-file-line html-div" data-testid="code-cell" data-line-number="132" style="position:relative"> <span class="pl-s1">data</span><span class="pl-c1">=</span><span class="pl-en">list</span>(<span class="pl-en">zip</span>(<span class="pl-s1">seq_names</span>, <span class="pl-v">J_per_object</span>, <span class="pl-v">F_per_object</span>, <span class="pl-v">V_per_object</span>)),</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC133" class="react-file-line html-div" data-testid="code-cell" data-line-number="133" style="position:relative"> <span class="pl-s1">columns</span><span class="pl-c1">=</span><span class="pl-s1">seq_measures</span>,</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC134" class="react-file-line html-div" data-testid="code-cell" data-line-number="134" style="position:relative"> )</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC135" class="react-file-line html-div" data-testid="code-cell" data-line-number="135" style="position:relative"> <span class="pl-s1">table_seq</span>.<span class="pl-en">to_csv</span>(<span class="pl-s1">sys</span>.<span class="pl-s1">stdout</span>, <span class="pl-s1">index</span><span class="pl-c1">=</span><span class="pl-c1">False</span>, <span class="pl-s1">float_format</span><span class="pl-c1">=</span><span class="pl-s">"%0.3f"</span>)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC136" class="react-file-line html-div" data-testid="code-cell" data-line-number="136" style="position:relative"> </div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC137" class="react-file-line html-div" data-testid="code-cell" data-line-number="137" style="position:relative"><span class="pl-c"># Write scores to a file named "scores.txt"</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC138" class="react-file-line html-div" data-testid="code-cell" data-line-number="138" style="position:relative"><span class="pl-k">with</span> <span class="pl-en">open</span>(<span class="pl-s1">os</span>.<span class="pl-s1">path</span>.<span class="pl-en">join</span>(<span class="pl-s1">output_dir</span>, <span class="pl-s">"scores.txt"</span>), <span class="pl-s">"w"</span>) <span class="pl-k">as</span> <span class="pl-s1">output_file</span>:</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC139" class="react-file-line html-div" data-testid="code-cell" data-line-number="139" style="position:relative"> <span class="pl-s1">final_mean</span> <span class="pl-c1">=</span> (<span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">J</span>[<span class="pl-s">"M"</span>]) <span class="pl-c1">+</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">F</span>[<span class="pl-s">"M"</span>])) <span class="pl-c1">/</span> <span class="pl-c1">2.0</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC140" class="react-file-line html-div" data-testid="code-cell" data-line-number="140" style="position:relative"> <span class="pl-s1">output_file</span>.<span class="pl-en">write</span>(<span class="pl-s">"Overall: %f<span class="pl-cce">\n</span>"</span> <span class="pl-c1">%</span> <span class="pl-s1">final_mean</span>)</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC141" class="react-file-line html-div" data-testid="code-cell" data-line-number="141" style="position:relative"> <span class="pl-s1">output_file</span>.<span class="pl-en">write</span>(</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC142" class="react-file-line html-div" data-testid="code-cell" data-line-number="142" style="position:relative"> <span class="pl-s">"J-Mean: %f<span class="pl-cce">\n</span>"</span> <span class="pl-c1">%</span> (<span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">J_seen</span>[<span class="pl-s">"M"</span>]) <span class="pl-c1">+</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">J_unseen</span>[<span class="pl-s">"M"</span>])) <span class="pl-c1">/</span> <span class="pl-c1">2</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC143" class="react-file-line html-div" data-testid="code-cell" data-line-number="143" style="position:relative"> )</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC144" class="react-file-line html-div" data-testid="code-cell" data-line-number="144" style="position:relative"> <span class="pl-s1">output_file</span>.<span class="pl-en">write</span>(<span class="pl-s">"J-seen-Mean: %f<span class="pl-cce">\n</span>"</span> <span class="pl-c1">%</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">J_seen</span>[<span class="pl-s">"M"</span>]))</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC145" class="react-file-line html-div" data-testid="code-cell" data-line-number="145" style="position:relative"> <span class="pl-s1">output_file</span>.<span class="pl-en">write</span>(<span class="pl-s">"J-unseen-Mean: %f<span class="pl-cce">\n</span>"</span> <span class="pl-c1">%</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">J_unseen</span>[<span class="pl-s">"M"</span>]))</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC146" class="react-file-line html-div" data-testid="code-cell" data-line-number="146" style="position:relative"> <span class="pl-s1">output_file</span>.<span class="pl-en">write</span>(</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC147" class="react-file-line html-div" data-testid="code-cell" data-line-number="147" style="position:relative"> <span class="pl-s">"F-Mean: %f<span class="pl-cce">\n</span>"</span> <span class="pl-c1">%</span> (<span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">F_seen</span>[<span class="pl-s">"M"</span>]) <span class="pl-c1">+</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">F_unseen</span>[<span class="pl-s">"M"</span>])) <span class="pl-c1">/</span> <span class="pl-c1">2</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC148" class="react-file-line html-div" data-testid="code-cell" data-line-number="148" style="position:relative"> )</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC149" class="react-file-line html-div" data-testid="code-cell" data-line-number="149" style="position:relative"> <span class="pl-s1">output_file</span>.<span class="pl-en">write</span>(<span class="pl-s">"F-seen-Mean: %f<span class="pl-cce">\n</span>"</span> <span class="pl-c1">%</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">F_seen</span>[<span class="pl-s">"M"</span>]))</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC150" class="react-file-line html-div" data-testid="code-cell" data-line-number="150" style="position:relative"> <span class="pl-s1">output_file</span>.<span class="pl-en">write</span>(<span class="pl-s">"F-unseen-Mean: %f<span class="pl-cce">\n</span>"</span> <span class="pl-c1">%</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">F_unseen</span>[<span class="pl-s">"M"</span>]))</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC151" class="react-file-line html-div" data-testid="code-cell" data-line-number="151" style="position:relative"> <span class="pl-s1">output_file</span>.<span class="pl-en">write</span>(</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC152" class="react-file-line html-div" data-testid="code-cell" data-line-number="152" style="position:relative"> <span class="pl-s">"V-Mean: %f<span class="pl-cce">\n</span>"</span> <span class="pl-c1">%</span> (<span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">V_seen</span>[<span class="pl-s">"M"</span>]) <span class="pl-c1">+</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">V_unseen</span>[<span class="pl-s">"M"</span>])) <span class="pl-c1">/</span> <span class="pl-c1">2</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC153" class="react-file-line html-div" data-testid="code-cell" data-line-number="153" style="position:relative"> )</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC154" class="react-file-line html-div" data-testid="code-cell" data-line-number="154" style="position:relative"> <span class="pl-s1">output_file</span>.<span class="pl-en">write</span>(<span class="pl-s">"V-seen-Mean: %f<span class="pl-cce">\n</span>"</span> <span class="pl-c1">%</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">V_seen</span>[<span class="pl-s">"M"</span>]))</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC155" class="react-file-line html-div" data-testid="code-cell" data-line-number="155" style="position:relative"> <span class="pl-s1">output_file</span>.<span class="pl-en">write</span>(<span class="pl-s">"V-unseen-Mean: %f<span class="pl-cce">\n</span>"</span> <span class="pl-c1">%</span> <span class="pl-s1">np</span>.<span class="pl-en">mean</span>(<span class="pl-v">V_unseen</span>[<span class="pl-s">"M"</span>]))</div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC156" class="react-file-line html-div" data-testid="code-cell" data-line-number="156" style="position:relative"><span class="pl-s1">total_time</span> <span class="pl-c1">=</span> <span class="pl-en">time</span>() <span class="pl-c1">-</span> <span class="pl-s1">time_start</span></div></div></div><div class="react-code-text react-code-line-contents" style="min-height:auto"><div><div id="LC157" class="react-file-line html-div" data-testid="code-cell" data-line-number="157" style="position:relative"><span class="pl-s1">sys</span>.<span class="pl-s1">stdout</span>.<span class="pl-en">write</span>(<span class="pl-s">"<span class="pl-cce">\n</span>Total time:"</span> <span class="pl-c1">+</span> <span class="pl-en">str</span>(<span class="pl-s1">total_time</span>))</div></div></div></div></div></div><div id="copilot-button-container"></div></div><div id="highlighted-line-menu-container"></div></div></div><button hidden="" data-testid="hotkey-button" data-hotkey-scope="read-only-cursor-text-area"></button><button hidden=""></button></section></div></div></div> <!-- --> <!-- --> </div></div></div><div class="Box-sc-g0xbh4-0"></div></div></div></div></div><div id="find-result-marks-container" class="Box-sc-g0xbh4-0 cCoXib"></div><button hidden="" data-testid="" data-hotkey-scope="read-only-cursor-text-area"></button><button hidden=""></button></div> <!-- --> <!-- --> <script type="application/json" id="__PRIMER_DATA_:R0:__">{"resolvedServerColorMode":"day"}</script></div> </react-app> </turbo-frame> </div> </turbo-frame> </main> </div> </div> <footer class="footer pt-8 pb-6 f6 color-fg-muted p-responsive" role="contentinfo" > <h2 class='sr-only'>Footer</h2> <div class="d-flex flex-justify-center flex-items-center 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6.75 0h7.5C15.216 0 16 .784 16 1.75v7.5A1.75 1.75 0 0 1 14.25 11h-7.5A1.75 1.75 0 0 1 5 9.25Zm1.75-.25a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h7.5a.25.25 0 0 0 .25-.25v-7.5a.25.25 0 0 0-.25-.25Z"></path> </svg> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-check js-clipboard-check-icon color-fg-success d-none m-2"> <path d="M13.78 4.22a.75.75 0 0 1 0 1.06l-7.25 7.25a.75.75 0 0 1-1.06 0L2.22 9.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018L6 10.94l6.72-6.72a.75.75 0 0 1 1.06 0Z"></path> </svg> </clipboard-copy> </div> </template> <template id="snippet-clipboard-copy-button-unpositioned"> <div class="zeroclipboard-container"> <clipboard-copy aria-label="Copy" class="ClipboardButton btn btn-invisible js-clipboard-copy m-2 p-0 d-flex flex-justify-center flex-items-center" data-copy-feedback="Copied!" data-tooltip-direction="w"> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-copy js-clipboard-copy-icon"> <path d="M0 6.75C0 5.784.784 5 1.75 5h1.5a.75.75 0 0 1 0 1.5h-1.5a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h7.5a.25.25 0 0 0 .25-.25v-1.5a.75.75 0 0 1 1.5 0v1.5A1.75 1.75 0 0 1 9.25 16h-7.5A1.75 1.75 0 0 1 0 14.25Z"></path><path d="M5 1.75C5 .784 5.784 0 6.75 0h7.5C15.216 0 16 .784 16 1.75v7.5A1.75 1.75 0 0 1 14.25 11h-7.5A1.75 1.75 0 0 1 5 9.25Zm1.75-.25a.25.25 0 0 0-.25.25v7.5c0 .138.112.25.25.25h7.5a.25.25 0 0 0 .25-.25v-7.5a.25.25 0 0 0-.25-.25Z"></path> </svg> <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-check js-clipboard-check-icon color-fg-success d-none"> <path d="M13.78 4.22a.75.75 0 0 1 0 1.06l-7.25 7.25a.75.75 0 0 1-1.06 0L2.22 9.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018L6 10.94l6.72-6.72a.75.75 0 0 1 1.06 0Z"></path> </svg> </clipboard-copy> </div> </template> </div> <div id="js-global-screen-reader-notice" class="sr-only mt-n1" aria-live="polite" aria-atomic="true" ></div> <div id="js-global-screen-reader-notice-assertive" class="sr-only mt-n1" aria-live="assertive" aria-atomic="true"></div> </body> </html>