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Genomics in healthcare: GA4GH looks to 2022 | bioRxiv
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This pre-print is available under a Creative Commons License (Attribution 4.0 International), CC BY 4.0, as described at http://creativecommons.org/licenses/by/4.0/" /> <meta name="DC.AccessRights" content="restricted" /> <meta name="DC.Description" content="The Global Alliance for Genomics and Health (GA4GH), the standards-setting body in genomics for healthcare, aims to accelerate biomedical advancement globally. We describe the differences between healthcare- and research-driven genomics, discuss the implications of global, population-scale collections of human data for research, and outline mission-critical considerations in ethics, regulation, technology, data protection, and society. We present a crude model for estimating the rate of healthcare-funded genomes worldwide that accounts for the preparedness of each country for genomics, and infers a progression of cancer-related sequencing over time. We estimate that over 60 million patients will have their genome sequenced in a healthcare context by 2025. This represents a large technical challenge for healthcare systems, and a huge opportunity for research. We identify eight major practical, principled arguments to support the position that virtual cohorts of 100 million people or more would have tangible research benefits." /> <meta name="DC.Contributor" content="Ewan Birney" /> <meta name="DC.Contributor" content="Jessica Vamathevan" /> <meta name="DC.Contributor" content="Peter Goodhand" /> <meta name="article:published_time" content="2017-10-15" /> <meta name="article:section" content="New Results" /> <meta name="citation_title" content="Genomics in healthcare: GA4GH looks to 2022" /> <meta name="citation_abstract" lang="en" content="<h3>Abstract</h3> <p>The Global Alliance for Genomics and Health (GA4GH), the standards-setting body in genomics for healthcare, aims to accelerate biomedical advancement globally. We describe the differences between healthcare- and research-driven genomics, discuss the implications of global, population-scale collections of human data for research, and outline mission-critical considerations in ethics, regulation, technology, data protection, and society. We present a crude model for estimating the rate of healthcare-funded genomes worldwide that accounts for the preparedness of each country for genomics, and infers a progression of cancer-related sequencing over time. We estimate that over 60 million patients will have their genome sequenced in a healthcare context by 2025. This represents a large technical challenge for healthcare systems, and a huge opportunity for research. We identify eight major practical, principled arguments to support the position that virtual cohorts of 100 million people or more would have tangible research benefits.</p>" /> <meta name="citation_journal_title" content="bioRxiv" /> <meta name="citation_publisher" content="Cold Spring Harbor Laboratory" /> <meta name="citation_publication_date" content="2017/01/01" /> <meta name="citation_mjid" content="biorxiv;203554v1" /> <meta name="citation_id" content="203554v1" /> <meta name="citation_public_url" content="https://www.biorxiv.org/content/10.1101/203554v1" /> <meta name="citation_abstract_html_url" content="https://www.biorxiv.org/content/10.1101/203554v1.abstract" /> <meta name="citation_full_html_url" content="https://www.biorxiv.org/content/10.1101/203554v1.full" /> <meta name="citation_pdf_url" content="https://www.biorxiv.org/content/biorxiv/early/2017/10/15/203554.full.pdf" /> <meta name="citation_doi" content="10.1101/203554" /> <meta name="citation_num_pages" content="20" /> <meta name="citation_article_type" content="Article" /> <meta name="citation_section" content="New Results" /> <meta name="citation_firstpage" content="203554" /> <meta name="citation_author" content="Ewan Birney" /> <meta name="citation_author_institution" content="European Molecular Biology Laboratory–European Bioinformatics Institute" /> <meta name="citation_author_email" content="birney@ebi.ac.uk" /> <meta name="citation_author_orcid" content="http://orcid.org/0000-0001-8314-8497" /> <meta name="citation_author" content="Jessica Vamathevan" /> <meta name="citation_author_institution" content="European Molecular Biology Laboratory–European Bioinformatics Institute" /> <meta name="citation_author_orcid" content="http://orcid.org/0000-0003-2016-9754" /> <meta name="citation_author" content="Peter Goodhand" /> <meta name="citation_author_institution" content="Ontario Institute for Cancer Research" /> <meta name="citation_reference" content="Gilmour MW, Graham M, Reimer A, Van Domselaar G (2013) Public health genomics and the new molecular epidemiology of bacterial pathogens. 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We describe the differences between healthcare- and research-driven genomics, discuss the implications of global, population-scale collections of human data for research, and outline mission-critical considerations in ethics, regulation, technology, data protection, and society. We present a crude model for estimating the rate of healthcare-funded genomes worldwide that accounts for the preparedness of each country for genomics, and infers a progression of cancer-related sequencing over time. We estimate that over 60 million patients will have their genome sequenced in a healthcare context by 2025. This represents a large technical challenge for healthcare systems, and a huge opportunity for research. We identify eight major practical, principled arguments to support the position that virtual cohorts of 100 million people or more would have tangible research benefits." /> <meta name="og-title" property="og:title" content="Genomics in healthcare: GA4GH looks to 2022" /> <meta name="og-url" property="og:url" content="https://www.biorxiv.org/content/10.1101/203554v1" /> <meta name="og-site-name" property="og:site_name" content="bioRxiv" /> <meta name="og-description" property="og:description" content="The Global Alliance for Genomics and Health (GA4GH), the standards-setting body in genomics for healthcare, aims to accelerate biomedical advancement globally. We describe the differences between healthcare- and research-driven genomics, discuss the implications of global, population-scale collections of human data for research, and outline mission-critical considerations in ethics, regulation, technology, data protection, and society. We present a crude model for estimating the rate of healthcare-funded genomes worldwide that accounts for the preparedness of each country for genomics, and infers a progression of cancer-related sequencing over time. We estimate that over 60 million patients will have their genome sequenced in a healthcare context by 2025. This represents a large technical challenge for healthcare systems, and a huge opportunity for research. We identify eight major practical, principled arguments to support the position that virtual cohorts of 100 million people or more would have tangible research benefits." /> <meta name="og-type" property="og:type" content="article" /> <meta name="og-image" property="og:image" content="https://www.biorxiv.org/sites/default/files/images/biorxiv_logo_homepage7-5-small.png" /> <meta name="citation_date" content="2017-10-15" /> <link rel="alternate" type="application/vnd.ms-powerpoint" title="Powerpoint" href="/content/10.1101/203554v1.ppt" /> <meta name="description" content="bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution" /> <meta name="generator" content="Drupal 7 (http://drupal.org)" /> <link rel="canonical" href="https://www.biorxiv.org/content/10.1101/203554v1" /> <link rel="shortlink" href="https://www.biorxiv.org/node/62015" /> <title>Genomics in healthcare: GA4GH looks to 2022 | bioRxiv</title> <link 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data-hw-author-tooltip-instance="highwire_author_tooltip"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-top clearfix has-author-tooltip" > <span class="biorxiv-article-type"> New Results </span> <h1 class="highwire-cite-title" id="page-title">Genomics in healthcare: GA4GH looks to 2022</h1> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first hw-author-orcid-logo-wrapper" data-delta="0"><a href="http://orcid.org/0000-0001-8314-8497" target="_blank" class="hw-author-orcid-logo link-icon-only link-icon"><span class="hw-icon-orcid hw-icon-color-orcid"></span> <span class="title element-invisible">View ORCID Profile</span></a><span class="nlm-given-names">Ewan</span> <span class="nlm-surname">Birney</span></span>, <span class="highwire-citation-author hw-author-orcid-logo-wrapper" data-delta="1"><a href="http://orcid.org/0000-0003-2016-9754" target="_blank" class="hw-author-orcid-logo link-icon-only link-icon"><span class="hw-icon-orcid hw-icon-color-orcid"></span> <span class="title element-invisible">View ORCID Profile</span></a><span class="nlm-given-names">Jessica</span> <span class="nlm-surname">Vamathevan</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Peter</span> <span class="nlm-surname">Goodhand</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="label">doi:</span> https://doi.org/10.1101/203554 </span></div> </div> <div id="hw-article-author-popups-node-62015--2857233676" style="display: none;"><div class="author-tooltip-0"><div class="author-tooltip-name">Ewan Birney </div><div class="author-tooltip-affiliation"><span class="author-tooltip-text"><div class='author-affiliation'><span class='nlm-sup'>1</span><span class='nlm-institution'>European Molecular Biology Laboratory–European Bioinformatics Institute</span>, Hinxton, Cambridge, <span class='nlm-country'>United Kingdom</span></div></span></div><ul class="author-tooltip-find-more"><li class="author-tooltip-gs-link first"><a href="/lookup/google-scholar?link_type=googlescholar&gs_type=author&author%5B0%5D=Ewan%2BBirney%2B" target="_blank" class="" data-icon-position="" data-hide-link-title="0">Find this author on Google Scholar</a></li><li class="author-tooltip-pubmed-link"><a href="/lookup/external-ref?access_num=Birney%20E&link_type=AUTHORSEARCH" target="_blank" class="" data-icon-position="" data-hide-link-title="0">Find this author on PubMed</a></li><li class="author-site-search-link"><a href="/search/author1%3AEwan%2BBirney%2B" rel="nofollow" class="" data-icon-position="" data-hide-link-title="0">Search for this author on this site</a></li><li class="author-orcid-link"><a href="http://orcid.org/0000-0001-8314-8497" target="_blank" class="" data-icon-position="" data-hide-link-title="0">ORCID record for Ewan Birney</a></li><li class="author-corresp-email-link last"><span>For correspondence: <a href="mailto:birney@ebi.ac.uk" class="" data-icon-position="" data-hide-link-title="0">birney@ebi.ac.uk</a></span></li></ul></div><div class="author-tooltip-1"><div class="author-tooltip-name">Jessica Vamathevan </div><div class="author-tooltip-affiliation"><span class="author-tooltip-text"><div class='author-affiliation'><span class='nlm-sup'>1</span><span class='nlm-institution'>European Molecular Biology Laboratory–European Bioinformatics Institute</span>, Hinxton, Cambridge, <span class='nlm-country'>United Kingdom</span></div></span></div><ul class="author-tooltip-find-more"><li class="author-tooltip-gs-link first"><a href="/lookup/google-scholar?link_type=googlescholar&gs_type=author&author%5B0%5D=Jessica%2BVamathevan%2B" target="_blank" class="" data-icon-position="" data-hide-link-title="0">Find this author on Google Scholar</a></li><li class="author-tooltip-pubmed-link"><a 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