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<div class="na-top color-set component-margin-bottom--t3 color-set--red"> <div class="na-top__upper theme-color-b4-bg"> <div class="container"> <ul class="na-top__breadcrumb breadcrumb breadcrumb--2 breadcrumb--left"> <li> <a href="/ubda" target="_self" > Home </a> </li> <li> <span > UBDA User </span> </li> <li> <a href="/ubda/ubda-user/documents" target="_self" class=&quot;last&quot;> Documents </a> </li> </ul> <h1 class="na-top__title theme-color-text">Documents</h1> </div> </div> </div> </div> <main class="page-content" tabindex="-1"> <div style="margin:1em 0em 0em 0em;"> <div style="min-height:50px;"> <!--- Component quick link buttons start ----> <div class=""></div> <div id="page-content"> <div style="clear:both;overflow:hidden;display:block;"> <div class="container static-content color-set--red"> </div> </div> </div> <!--- Component quick link buttons end ----> <div class=""> <div > <div class="ITS_Content_Container_Collection "> <div class="plus-collapse-wrap color-set color-set--red"> <div class="container"> <div class="container component-text-content fix-color"> <h2 class="theme-color-text component-margin--no-bottom h2 text-center"> High Performance Computing (HPC) Service </h2> </div> <div class="collapse-wrap" id="collapse-wrap--7879358C6B2B464F"> <div class="plus-collapse rte-template-collapse"> <div class="plus-collapse__header rte-template-collapse__heading" id="#loginc0andc0filec0transferc0guide"> <a data-parent="#collapse-wrap--7879358C6B2B464F" aria-controls="collapse-wrap--7879358C6B2B464F" aria-expanded="false" class="plus-collapse__trigger rte-template-collapse__trigger" data-toggle="collapse" href="#!" role="button">Login and File Transfer Guide</a> </div> <div class=" collapse plus-collapse__content rte-template-collapse__content" data-parent="#collapse-wrap--7879358C6B2B464F" id="collapse-0" aria-labelledby="loginc0andc0filec0transferc0guide" > <div class="plus-collapse__inner rte-template-collapse__inner"> <div class="content container static-content"> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - SSH Login (Mac iOS) V1.1.pdf" target="_blank"><span>UBDA HPC - SSH Login (Mac iOS</span></a><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - SSH Login (Mac iOS) V1.1.pdf" target="_blank">)</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - SSH Login (Windows System) V1.1.pdf" target="_blank">UBDA HPC - SSH Login (Windows</a><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - SSH Login (Windows System) V1.1.pdf" target="_blank">&nbsp;System)</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/UBDA_Platform_Login_Windows_System_V1.0.pdf" target="_blank"></a><a rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - File Transfer (Mac iOS) V1.1.pdf" target="_blank" style="font-size: 1em;">UBDA HPC - File Transfer (Mac iOS)</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - File Transfer (Windows System) V1.2.pdf" target="_blank"><span>UBDA HPC - File Transfer (Windows</span></a><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - File Transfer (Windows System) V1.2.pdf" target="_blank">&nbsp;System)</a></p> </div> </div> </div> </div> <div class="plus-collapse rte-template-collapse"> <div class="plus-collapse__header rte-template-collapse__heading" id="#userc1guide"> <a data-parent="#collapse-wrap--7879358C6B2B464F" aria-controls="collapse-wrap--7879358C6B2B464F" aria-expanded="false" class="plus-collapse__trigger rte-template-collapse__trigger" data-toggle="collapse" href="#!" role="button">User Guide</a> </div> <div class=" collapse plus-collapse__content rte-template-collapse__content" data-parent="#collapse-wrap--7879358C6B2B464F" id="collapse-1" aria-labelledby="userc1guide" > <div class="plus-collapse__inner rte-template-collapse__inner"> <div class="content container static-content"> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Example for Tensorflow V2.1.pdf" target="_blank">UBDA HPC - Tensorflow</a><br /> <a href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Example for PyTorch V1.1.pdf" target="_blank"></a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Example for PyTorch V1.1.pdf" target="_blank">UBDA HPC - PyTorch</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Example for R V1.1.pdf" target="_blank">UBDA HPC - R</a></p> <p><span style="font-size: 1em;"><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Example for RMPI V2.1.pdf" target="_blank">UBDA HPC - RMPI (OpenMPI)</a></span></p> <p><span style="font-size: 1em;"><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Example for PySpark V1.1.pdf" target="_blank">UBDA HPC - PySpark</a></span></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/UBDA_Example_for_python_V1.0.pdf" target="_blank" style="font-size: 1em;">UBDA HPC - Using Python V1.0</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/UBDA_Example_for_Hadoop_BGFS_V1.0.pdf" target="_blank">UBDA HPC - Using Hadoop BGFS V1.0</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/UBDA_Example_for_FORTRAN_with_MPI_V1.0.pdf" target="_blank">UBDA HPC - Using FORTRAN with MPI V1.0</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/UBDA_Example_for_C_plus_plus_with_OpenMPI_V1.0.pdf" target="_blank">UBDA HPC - Using C++ with OpenMPI V1.0</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/UBDA_Example_for_C_with_OpenMPI_V1.0.pdf" target="_blank">UBDA HPC - Using C with OpenMPI V1.0</a>&nbsp;</p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/UBDA_Example_for_C_with_IntelMPI.pdf" target="_blank">UBDA HPC - Using C with IntelMPI V1.1</a>&nbsp;</p> </div> </div> </div> </div> <div class="plus-collapse rte-template-collapse"> <div class="plus-collapse__header rte-template-collapse__heading" id="#singularityc2containerc2guide"> <a data-parent="#collapse-wrap--7879358C6B2B464F" aria-controls="collapse-wrap--7879358C6B2B464F" aria-expanded="false" class="plus-collapse__trigger rte-template-collapse__trigger" data-toggle="collapse" href="#!" role="button">Singularity Container Guide</a> </div> <div class=" collapse plus-collapse__content rte-template-collapse__content" data-parent="#collapse-wrap--7879358C6B2B464F" id="collapse-2" aria-labelledby="singularityc2containerc2guide" > <div class="plus-collapse__inner rte-template-collapse__inner"> <div class="content container static-content"> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Singularity Example for AlphaFold V1.1.pdf" target="_blank">UBDA HPC - AlphaFold</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Singularity Example for CellRanger V1.1.pdf " target="_blank">UBDA HPC - CellRanger</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Singularity Example for Cplex V1.1.pdf " target="_blank">UBDA HPC - Cplex</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Singularity Example for FDS-SMV V1.1.pdf " target="_blank">UBDA HPC - FDS-SMV</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Singularity Example for LAMMPS V1.2.pdf " target="_blank">UBDA HPC - LAMMPS</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Singularity Example for OpenFOAM V1.1.pdf" target="_blank">UBDA HPC - OpenFOAM</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Singularity Example for RELION V1.1.pdf " target="_blank">UBDA HPC - RELION</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - Singularity Example for WRF V1.1.pdf" target="_blank">UBDA HPC - WRF</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - GUI Application for JupyterLab V1.2.pdf" target="_blank">UBDA HPC - JupyterLab (X11 Forward)</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - GUI Application for Octave V1.2.pdf" target="_blank">UBDA HPC - Octave (X11 Forward)</a></p> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - GUI Application for PyCharm V1.2.pdf" target="_blank">UBDA HPC - PyCharm&nbsp;(X11 Forward)</a></p> <p style="margin-top: 0.470588em; margin-bottom: 0.470588em;"><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - GUI Application for Rstudio Desktop V1.1.pdf" target="_blank">UBDA HPC - RStudio Desktop (X11 Forward)</a></p> <p style="margin-top: 0.470588em; margin-bottom: 0.470588em;"><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - GUI Application for Rstudio Server V1.3.pdf" target="_blank">UBDA HPC - RStudio Server (X11 Forward)</a></p> <p style="margin-top: 0.470588em;"><span style="font-size: 1em;"><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - GUI Application for Spyder IDE V1.2.pdf" target="_blank">UBDA HPC - Spyder&nbsp;(X11 Forward)</a></span></p> <p style="margin-top: 0.470588em;"><span style="font-size: 1em;"><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/ubdahpc/UBDA HPC - GUI Virtual Desktop V1.1.pdf" target="_blank">UBDA HPC - Virtual Desktop (VNC Viewer)</a></span></p> </div> </div> </div> </div> <div class="plus-collapse rte-template-collapse"> <div class="plus-collapse__header rte-template-collapse__heading" id="#mlc3dlc3examples"> <a data-parent="#collapse-wrap--7879358C6B2B464F" aria-controls="collapse-wrap--7879358C6B2B464F" aria-expanded="false" class="plus-collapse__trigger rte-template-collapse__trigger" data-toggle="collapse" href="#!" role="button">ML/DL Examples</a> </div> <div class=" collapse plus-collapse__content rte-template-collapse__content" data-parent="#collapse-wrap--7879358C6B2B464F" id="collapse-3" aria-labelledby="mlc3dlc3examples" > <div class="plus-collapse__inner rte-template-collapse__inner"> <div class="content container static-content"> <table> <tbody> <tr> <td> <p><span class="static-table--fullWidth--border--zebra">Category</span></p> </td> <td> <p>Example</p> </td> <td> <p>Techniques</p> </td> <td> <p>Readme for HPC</p> </td> <td>JupyterNoteBook</td> </tr> <tr> <td rowspan="4"> <p>Deep Learning</p> </td> <td> <p>Deep learning using cotton images</p> </td> <td> <p>Deep learning, tensorflow, sequential, CNN, binary labels</p> </td> <td> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/python_example/README-Deep-learning-using-cotton-images.pdf" target="_blank">Readme</a></p> </td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/jupyter_examples/cotton_ubda.zip" target="_blank">Notebook</a></td> </tr> <tr> <td> <p>Deep learning using ball images</p> </td> <td> <p>Deep learning, tensorflow,sequential, CNN, multi-labels</p> </td> <td> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/python_example/README-Deep-learning-using-ball-images.pdf" target="_blank">Readme</a></p> </td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/jupyter_examples/ball_predict.zip" target="_blank">Notebook</a></td> </tr> <tr> <td> <p>Deep learning using chest xray images</p> </td> <td> <p>TensorFlow, binary labels, prediction (neural network)</p> </td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/python_example/README-Deep-learning-using-chest-xary-images_v2.pdf" target="_blank">Readme</a></td> <td></td> </tr> <tr> <td> <p>Deep learning using traffic sign images</p> </td> <td> <p>TensorFlow, multi-labels, prediction (neural network)</p> </td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/python_example/README-Deep-learning-using-traffic-sign-images_v2.pdf" target="_blank">Readme</a></td> <td></td> </tr> <tr> <td rowspan="2"> <p>Classification</p> </td> <td> <p>Classification analysis of student information</p> </td> <td> <p>Linear Regression, Decision Trees, Logistic Regression, Random Forest</p> <p>Neural Networks, Support Vector Machines</p> </td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/python_example/README-Classification-analysis-of-student-information_v2.pdf" target="_blank">Readme</a></td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/jupyter_examples/LA-1_5.zip" target="_blank">Notebook</a></td> </tr> <tr> <td> <p>Classification analysis for flower images</p> </td> <td> <p>Logistic Regression, Linear Discriminant Analysis, K-Nearest Neighbors, Decision Trees,</p> <p>Random Forests, Gaussian Naive Bayes and Support Vector Machine</p> </td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/python_example/README-Classification-analysis-for-flower-images_v2.pdf" target="_blank">Readme</a></td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/jupyter_examples/classification_6.zip" target="_blank">Notebook</a></td> </tr> <tr> <td> <p>Clustering</p> </td> <td> <p>Clustering analysis using K-means</p> </td> <td> <p>k-means</p> </td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/python_example/README-Clustering-analysis-using-K-means_v2.pdf" target="_blank">Readme</a></td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/jupyter_examples/cluster_7.zip" target="_blank">Notebook</a></td> </tr> <tr> <td> <p>Text Analysis</p> </td> <td> <p>Text analysis using nltk for sentiment prediction</p> </td> <td> <p>CountVectorizer, Tfidf, Sentiment Prediction (naive_bayes)</p> </td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/python_example/README-Text-analysis-using-nltk-for-sentiment-prediction_v2.pdf" target="_blank">Readme</a></td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/jupyter_examples/text1_8.zip" target="_blank">Notebook</a></td> </tr> <tr> <td rowspan="2"> <p>Convex Optimization</p> </td> <td> <p>Convex optimization using CVXPPY for portfolio optimization</p> </td> <td> <p>Portfolio optimization, Linear Programming</p> </td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/python_example/README-Convex-optimization-using-CVXPPY-for-portfolio-optimization_v2.pdf" target="_blank">Readme</a></td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/jupyter_examples/opt1_10.zip" target="_blank">Notebook</a></td> </tr> <tr> <td> <p>Convex optimization using CVXOPT for floor planning</p> </td> <td> <p>Floor planning, Linear Programming</p> </td> <td> <p><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/python_example/README-Convex-optimization-using-CVXOPT-for-floor-planning_v2.pdf" target="_blank">Readme</a></p> </td> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.polyu.edu.hk/ubda/docdrive/_sso/doc/jupyter_examples/cvxopt_9.zip" target="_blank">Notebook</a></td> </tr> </tbody> </table> <br /> </div> </div> </div> </div> <div class="plus-collapse 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