Quantitative Biology

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25 Nov 2024 </a> </li><li> <a href="/list/q-bio/recent?skip=61&show=50"> Fri, 22 Nov 2024 </a> </li><li> <a href="/list/q-bio/recent?skip=73&show=50"> Thu, 21 Nov 2024 </a> </li><li> <a href="/list/q-bio/recent?skip=88&show=50"> Wed, 20 Nov 2024 </a> </li></ul> <p>See today's <a id="new-q-bio" aria-labelledby="new-q-bio" href="/list/q-bio/new">new</a> changes</p> <div class='paging'>Total of 104 entries : <span>1-50</span> <a href=/list/q-bio/recent?skip=50&show=50>51-100</a> <a href=/list/q-bio/recent?skip=100&show=50>101-104</a> </div> <div class='morefewer'>Showing up to 50 entries per page: <a href=/list/q-bio/recent?skip=0&show=25 rel="nofollow"> fewer</a> | <a href=/list/q-bio/recent?skip=0&show=100 rel="nofollow"> more</a> | <a href=/list/q-bio/recent?skip=0&show=2000 rel="nofollow"> all</a> </div> <dl id='articles'> <h3>Tue, 26 Nov 2024 (showing 39 of 39 entries )</h3> <dt> <a name='item1'>[1]</a> <a href ="/abs/2411.16582" title="Abstract" id="2411.16582"> arXiv:2411.16582 </a> [<a href="/pdf/2411.16582" title="Download PDF" id="pdf-2411.16582" aria-labelledby="pdf-2411.16582">pdf</a>, <a href="https://arxiv.org/html/2411.16582v1" title="View HTML" id="html-2411.16582" aria-labelledby="html-2411.16582" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16582" title="Other formats" id="oth-2411.16582" aria-labelledby="oth-2411.16582">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Dynamic Causal Models of Time-Varying Connectivity </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Medrano,+J">Johan Medrano</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Friston,+K+J">Karl J. Friston</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Zeidman,+P">Peter Zeidman</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 17 pages, 3 figures </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Neurons and Cognition (q-bio.NC)</span>; Biological Physics (physics.bio-ph); Applications (stat.AP) </div> </div> </dd> <dt> <a name='item2'>[2]</a> <a href ="/abs/2411.16558" title="Abstract" id="2411.16558"> arXiv:2411.16558 </a> [<a href="/pdf/2411.16558" title="Download PDF" id="pdf-2411.16558" aria-labelledby="pdf-2411.16558">pdf</a>, <a href="/format/2411.16558" title="Other formats" id="oth-2411.16558" aria-labelledby="oth-2411.16558">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Stability of Brain Functional Network During Working Memory Using Structural Balance Theory </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Gourabi,+S">Sepehr Gourabi</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Lotfalipour,+M">Masoud Lotfalipour</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Khosrowabadi,+R">Reza Khosrowabadi</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Jafari,+R">Reza Jafari</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Neurons and Cognition (q-bio.NC)</span> </div> </div> </dd> <dt> <a name='item3'>[3]</a> <a href ="/abs/2411.16374" title="Abstract" id="2411.16374"> arXiv:2411.16374 </a> [<a href="/pdf/2411.16374" title="Download PDF" id="pdf-2411.16374" aria-labelledby="pdf-2411.16374">pdf</a>, <a href="https://arxiv.org/html/2411.16374v1" title="View HTML" id="html-2411.16374" aria-labelledby="html-2411.16374" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16374" title="Other formats" id="oth-2411.16374" aria-labelledby="oth-2411.16374">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Global and local synchrony of coupled neurons in small-world networks </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Masuda,+N">Naoki Masuda</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Aihara,+K">Kazuyuki Aihara</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 4 figures </div> <div class='list-journal-ref'><span class='descriptor'>Journal-ref:</span> Biological Cybernetics, 90, 302-309 (2004) </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Neurons and Cognition (q-bio.NC)</span>; Disordered Systems and Neural Networks (cond-mat.dis-nn) </div> </div> </dd> <dt> <a name='item4'>[4]</a> <a href ="/abs/2411.16362" title="Abstract" id="2411.16362"> arXiv:2411.16362 </a> [<a href="/pdf/2411.16362" title="Download PDF" id="pdf-2411.16362" aria-labelledby="pdf-2411.16362">pdf</a>, <a href="https://arxiv.org/html/2411.16362v1" title="View HTML" id="html-2411.16362" aria-labelledby="html-2411.16362" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16362" title="Other formats" id="oth-2411.16362" aria-labelledby="oth-2411.16362">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Optimal switching strategies in multi-drug therapies for chronic diseases </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Magalang,+J">Juan Magalang</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Aguilar,+J">Javier Aguilar</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Esguerra,+J+P">Jose Perico Esguerra</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Rold%C3%A1n,+%C3%89">脡dgar Rold谩n</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Sanchez-Taltavull,+D">Daniel Sanchez-Taltavull</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Populations and Evolution (q-bio.PE)</span>; Statistical Mechanics (cond-mat.stat-mech); Dynamical Systems (math.DS); Biological Physics (physics.bio-ph) </div> </div> </dd> <dt> <a name='item5'>[5]</a> <a href ="/abs/2411.16264" title="Abstract" id="2411.16264"> arXiv:2411.16264 </a> [<a href="/pdf/2411.16264" title="Download PDF" id="pdf-2411.16264" aria-labelledby="pdf-2411.16264">pdf</a>, <a href="https://arxiv.org/html/2411.16264v1" title="View HTML" id="html-2411.16264" aria-labelledby="html-2411.16264" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16264" title="Other formats" id="oth-2411.16264" aria-labelledby="oth-2411.16264">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Evaluaci\'on del Cambio en la Musculatura y Adiposidad y su Relaci\'on con la Recurrencia del Carcinoma de Cabeza y Cuello mediante PET/CT y MRI </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=del+Campo,+V">Virginia del Campo</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Malaina,+I">Iker Malaina</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 9 pages, in Spanish language, 1 figure </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Tissues and Organs (q-bio.TO)</span> </div> </div> </dd> <dt> <a name='item6'>[6]</a> <a href ="/abs/2411.16259" title="Abstract" id="2411.16259"> arXiv:2411.16259 </a> [<a href="/pdf/2411.16259" title="Download PDF" id="pdf-2411.16259" aria-labelledby="pdf-2411.16259">pdf</a>, <a href="https://arxiv.org/html/2411.16259v1" title="View HTML" id="html-2411.16259" aria-labelledby="html-2411.16259" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16259" title="Other formats" id="oth-2411.16259" aria-labelledby="oth-2411.16259">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Impact of gas background on XFEL single-particle imaging </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=You,+T">Tong You</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Bielecki,+J">Johan Bielecki</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Maia,+F+R">Filipe R.N.C. Maia</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Biomolecules (q-bio.BM)</span>; Biological Physics (physics.bio-ph); Instrumentation and Detectors (physics.ins-det) </div> </div> </dd> <dt> <a name='item7'>[7]</a> <a href ="/abs/2411.16223" title="Abstract" id="2411.16223"> arXiv:2411.16223 </a> [<a href="/pdf/2411.16223" title="Download PDF" id="pdf-2411.16223" aria-labelledby="pdf-2411.16223">pdf</a>, <a href="https://arxiv.org/html/2411.16223v1" title="View HTML" id="html-2411.16223" aria-labelledby="html-2411.16223" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16223" title="Other formats" id="oth-2411.16223" aria-labelledby="oth-2411.16223">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Numerical investigation of the effect of macro control measures on epidemics transport via a coupled PDE crowd flow - epidemics spreading dynamics model </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Delis,+A">A.I. Delis</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Bekiaris-Liberis,+N">N. Bekiaris-Liberis</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 34 pages, 24 figures, Submitted to Elsevier </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Populations and Evolution (q-bio.PE)</span>; Numerical Analysis (math.NA) </div> </div> </dd> <dt> <a name='item8'>[8]</a> <a href ="/abs/2411.16084" title="Abstract" id="2411.16084"> arXiv:2411.16084 </a> [<a href="/pdf/2411.16084" title="Download PDF" id="pdf-2411.16084" aria-labelledby="pdf-2411.16084">pdf</a>, <a href="https://arxiv.org/html/2411.16084v1" title="View HTML" id="html-2411.16084" aria-labelledby="html-2411.16084" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16084" title="Other formats" id="oth-2411.16084" aria-labelledby="oth-2411.16084">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Deciphering genomic codes using advanced NLP techniques: a scoping review </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Cheng,+S">Shuyan Cheng</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Wei,+Y">Yishu Wei</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Zhou,+Y">Yiliang Zhou</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Xu,+Z">Zihan Xu</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Wright,+D+N">Drew N Wright</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Liu,+J">Jinze Liu</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Peng,+Y">Yifan Peng</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Genomics (q-bio.GN)</span>; Artificial Intelligence (cs.AI) </div> </div> </dd> <dt> <a name='item9'>[9]</a> <a href ="/abs/2411.16075" title="Abstract" id="2411.16075"> arXiv:2411.16075 </a> [<a href="/pdf/2411.16075" title="Download PDF" id="pdf-2411.16075" aria-labelledby="pdf-2411.16075">pdf</a>, <a href="/format/2411.16075" title="Other formats" id="oth-2411.16075" aria-labelledby="oth-2411.16075">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> The brain versus AI: World-model-based versatile circuit computation underlying diverse functions in the neocortex and cerebellum </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Ohmae,+S">Shogo Ohmae</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Ohmae,+K">Keiko Ohmae</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Neurons and Cognition (q-bio.NC)</span>; Artificial Intelligence (cs.AI) </div> </div> </dd> <dt> <a name='item10'>[10]</a> <a href ="/abs/2411.15900" title="Abstract" id="2411.15900"> arXiv:2411.15900 </a> [<a href="/pdf/2411.15900" title="Download PDF" id="pdf-2411.15900" aria-labelledby="pdf-2411.15900">pdf</a>, <a href="https://arxiv.org/html/2411.15900v1" title="View HTML" id="html-2411.15900" aria-labelledby="html-2411.15900" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15900" title="Other formats" id="oth-2411.15900" aria-labelledby="oth-2411.15900">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Finding Thermodynamically Favorable Pathways in Reaction Networks using Flows in Hypergraphs and Mixed Integer Linear Programming </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Pal,+A">Adittya Pal</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Fagerberg,+R">Rolf Fagerberg</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Andersen,+J+L">Jakob Lykke Andersen</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Flamm,+C">Christoph Flamm</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Dittrich,+P">Peter Dittrich</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Merkle,+D">Daniel Merkle</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 36 pages, 9 figures, 6 tables </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Molecular Networks (q-bio.MN)</span>; Systems and Control (eess.SY); Chemical Physics (physics.chem-ph) </div> </div> </dd> <dt> <a name='item11'>[11]</a> <a href ="/abs/2411.15859" title="Abstract" id="2411.15859"> arXiv:2411.15859 </a> [<a href="/pdf/2411.15859" title="Download PDF" id="pdf-2411.15859" aria-labelledby="pdf-2411.15859">pdf</a>, <a href="https://arxiv.org/html/2411.15859v1" title="View HTML" id="html-2411.15859" aria-labelledby="html-2411.15859" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15859" title="Other formats" id="oth-2411.15859" aria-labelledby="oth-2411.15859">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Equilibrium Analysis of Discrete Stochastic Population Models with Gamma Distribution </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Wang,+H">Haiyan Wang</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Populations and Evolution (q-bio.PE)</span> </div> </div> </dd> <dt> <a name='item12'>[12]</a> <a href ="/abs/2411.15709" title="Abstract" id="2411.15709"> arXiv:2411.15709 </a> [<a href="/pdf/2411.15709" title="Download PDF" id="pdf-2411.15709" aria-labelledby="pdf-2411.15709">pdf</a>, <a href="/format/2411.15709" title="Other formats" id="oth-2411.15709" aria-labelledby="oth-2411.15709">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Optimization of Bloch-Siegert B1 Mapping Sequence for Maximum Signal to Noise </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Khalighi,+M+M">M. Mehdi Khalighi</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Kelley,+D">Doug Kelley</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Su,+J+H">Jason H. Su</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Rutt,+B+K">Brian K. Rutt</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Kerr,+A+B">Adam B. Kerr</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Quantitative Methods (q-bio.QM)</span> </div> </div> </dd> <dt> <a name='item13'>[13]</a> <a href ="/abs/2411.15684" title="Abstract" id="2411.15684"> arXiv:2411.15684 </a> [<a href="/pdf/2411.15684" title="Download PDF" id="pdf-2411.15684" aria-labelledby="pdf-2411.15684">pdf</a>, <a href="https://arxiv.org/html/2411.15684v1" title="View HTML" id="html-2411.15684" aria-labelledby="html-2411.15684" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15684" title="Other formats" id="oth-2411.15684" aria-labelledby="oth-2411.15684">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Disentangling the Complex Multiplexed DIA Spectra in De Novo Peptide Sequencing </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Ma,+Z">Zheng Ma</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Mao,+Z">Zeping Mao</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Zhang,+R">Ruixue Zhang</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Chen,+J">Jiazhen Chen</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Xin,+L">Lei Xin</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Shan,+P">Paul Shan</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Ghodsi,+A">Ali Ghodsi</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Li,+M">Ming Li</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Biomolecules (q-bio.BM)</span>; Machine Learning (cs.LG) </div> </div> </dd> <dt> <a name='item14'>[14]</a> <a href ="/abs/2411.15647" title="Abstract" id="2411.15647"> arXiv:2411.15647 </a> [<a href="/pdf/2411.15647" title="Download PDF" id="pdf-2411.15647" aria-labelledby="pdf-2411.15647">pdf</a>, <a href="/format/2411.15647" title="Other formats" id="oth-2411.15647" aria-labelledby="oth-2411.15647">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Circuit design in biology and machine learning. II. Anomaly detection </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Frank,+S+A">Steven A. Frank</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Populations and Evolution (q-bio.PE)</span>; Machine Learning (cs.LG) </div> </div> </dd> <dt> <a name='item15'>[15]</a> <a href ="/abs/2411.15618" title="Abstract" id="2411.15618"> arXiv:2411.15618 </a> [<a href="/pdf/2411.15618" title="Download PDF" id="pdf-2411.15618" aria-labelledby="pdf-2411.15618">pdf</a>, <a href="https://arxiv.org/html/2411.15618v1" title="View HTML" id="html-2411.15618" aria-labelledby="html-2411.15618" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15618" title="Other formats" id="oth-2411.15618" aria-labelledby="oth-2411.15618">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Accelerated Hydration Site Localization and Thermodynamic Profiling </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Hinz,+F+B">Florian B. Hinz</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Masters,+M+R">Matthew R. Masters</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Kieu,+J+N">Julia N. Kieu</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Mahmoud,+A+H">Amr H. Mahmoud</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Lill,+M+A">Markus A. Lill</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Biomolecules (q-bio.BM)</span>; Machine Learning (cs.LG) </div> </div> </dd> <dt> <a name='item16'>[16]</a> <a href ="/abs/2411.15467" title="Abstract" id="2411.15467"> arXiv:2411.15467 </a> [<a href="/pdf/2411.15467" title="Download PDF" id="pdf-2411.15467" aria-labelledby="pdf-2411.15467">pdf</a>, <a href="/format/2411.15467" title="Other formats" id="oth-2411.15467" aria-labelledby="oth-2411.15467">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Ma,+Y">Yingke Ma</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Zhao,+X">Xuetong Zhao</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Jia,+Y">Yaokai Jia</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Han,+Z">Zhenxian Han</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Yu,+C">Caixia Yu</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Fan,+Z">Zhuojing Fan</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Zhang,+Z">Zhang Zhang</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Xiao,+J">Jingfa Xiao</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Zhao,+W">Wenming Zhao</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Bao,+Y">Yiming Bao</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Chen,+M">Meili Chen</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 17 pages, 2 figures </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Genomics (q-bio.GN)</span> </div> </div> </dd> <dt> <a name='item17'>[17]</a> <a href ="/abs/2411.15418" title="Abstract" id="2411.15418"> arXiv:2411.15418 </a> [<a href="/pdf/2411.15418" title="Download PDF" id="pdf-2411.15418" aria-labelledby="pdf-2411.15418">pdf</a>, <a href="https://arxiv.org/html/2411.15418v1" title="View HTML" id="html-2411.15418" aria-labelledby="html-2411.15418" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15418" title="Other formats" id="oth-2411.15418" aria-labelledby="oth-2411.15418">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> SPRINT Enables Interpretable and Ultra-Fast Virtual Screening against Thousands of Proteomes </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=McNutt,+A+T">Andrew T. McNutt</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Adduri,+A+K">Abhinav K. Adduri</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Ellington,+C+N">Caleb N. Ellington</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Dayao,+M+T">Monica T. Dayao</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Xing,+E+P">Eric P. Xing</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Mohimani,+H">Hosein Mohimani</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Koes,+D+R">David R. Koes</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> Machine Learning for Structural Biology Workshop, NeurIPS 2024 </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Biomolecules (q-bio.BM)</span>; Machine Learning (cs.LG) </div> </div> </dd> <dt> <a name='item18'>[18]</a> <a href ="/abs/2411.15400" title="Abstract" id="2411.15400"> arXiv:2411.15400 </a> [<a href="/pdf/2411.15400" title="Download PDF" id="pdf-2411.15400" aria-labelledby="pdf-2411.15400">pdf</a>, <a href="https://arxiv.org/html/2411.15400v1" title="View HTML" id="html-2411.15400" aria-labelledby="html-2411.15400" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15400" title="Other formats" id="oth-2411.15400" aria-labelledby="oth-2411.15400">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Group-wise normalization in differential abundance analysis of microbiome samples </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Clark-Boucher,+D">Dylan Clark-Boucher</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Coull,+B+A">Brent A Coull</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Reeder,+H+T">Harrison T Reeder</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Wang,+F">Fenglei Wang</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Sun,+Q">Qi Sun</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Starr,+J+R">Jacqueline R Starr</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Lee,+K+H">Kyu Ha Lee</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Genomics (q-bio.GN)</span> </div> </div> </dd> <dt> <a name='item19'>[19]</a> <a href ="/abs/2411.15309" title="Abstract" id="2411.15309"> arXiv:2411.15309 </a> [<a href="/pdf/2411.15309" title="Download PDF" id="pdf-2411.15309" aria-labelledby="pdf-2411.15309">pdf</a>, <a href="/format/2411.15309" title="Other formats" id="oth-2411.15309" aria-labelledby="oth-2411.15309">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> An improved, high yield method for isolating nuclei from individual zebrafish embryos for single-nucleus RNA sequencing </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Rostomily,+C">Clifford Rostomily</a> (1 and 2), <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Lee,+H">Heidi Lee</a> (1 and 2), <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Tresenrider,+A">Amy Tresenrider</a> (1 and 2), <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Daza,+R">Riza Daza</a> (1 and 2), <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Mullen,+A">Andrew Mullen</a> (1 and 2), <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Shendure,+J">Jay Shendure</a> (1 and 2), <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Kimelman,+D">David Kimelman</a> (1 and 2), <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Trapnell,+C">Cole Trapnell</a> (1 and 2) ((1) University of Washington, Department of Genome Sciences, Seattle, WA, USA, (2) Seattle Hub for Synthetic Biology, Seattle, WA, USA)</div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> Clifford Rostomily and Heidi Lee contributed equally to this work </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Genomics (q-bio.GN)</span> </div> </div> </dd> <dt> <a name='item20'>[20]</a> <a href ="/abs/2411.15293" title="Abstract" id="2411.15293"> arXiv:2411.15293 </a> [<a href="/pdf/2411.15293" title="Download PDF" id="pdf-2411.15293" aria-labelledby="pdf-2411.15293">pdf</a>, <a href="https://arxiv.org/html/2411.15293v1" title="View HTML" id="html-2411.15293" aria-labelledby="html-2411.15293" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15293" title="Other formats" id="oth-2411.15293" aria-labelledby="oth-2411.15293">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> The Mean-Field Survival Model for Stripe Formation in Zebrafish Exhibits Turing Instability </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Jencks,+R">Robert Jencks</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 44 pages, 9 figures, submitted to Mathematical Biosciences </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Tissues and Organs (q-bio.TO)</span>; Dynamical Systems (math.DS); Populations and Evolution (q-bio.PE) </div> </div> </dd> <dt> <a name='item21'>[21]</a> <a href ="/abs/2411.15243" title="Abstract" id="2411.15243"> arXiv:2411.15243 </a> [<a href="/pdf/2411.15243" title="Download PDF" id="pdf-2411.15243" aria-labelledby="pdf-2411.15243">pdf</a>, <a href="https://arxiv.org/html/2411.15243v1" title="View HTML" id="html-2411.15243" aria-labelledby="html-2411.15243" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15243" title="Other formats" id="oth-2411.15243" aria-labelledby="oth-2411.15243">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Bio-inspired AI: Integrating Biological Complexity into Artificial Intelligence </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Dehghani,+N">Nima Dehghani</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Levin,+M">Michael Levin</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Neurons and Cognition (q-bio.NC)</span>; Artificial Intelligence (cs.AI); Computation and Language (cs.CL); Computer Vision and Pattern Recognition (cs.CV); Neural and Evolutionary Computing (cs.NE); Symbolic Computation (cs.SC) </div> </div> </dd> <dt> <a name='item22'>[22]</a> <a href ="/abs/2411.15234" title="Abstract" id="2411.15234"> arXiv:2411.15234 </a> [<a href="/pdf/2411.15234" title="Download PDF" id="pdf-2411.15234" aria-labelledby="pdf-2411.15234">pdf</a>, <a href="https://arxiv.org/html/2411.15234v1" title="View HTML" id="html-2411.15234" aria-labelledby="html-2411.15234" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15234" title="Other formats" id="oth-2411.15234" aria-labelledby="oth-2411.15234">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Adaptive Intelligence: leveraging insights from adaptive behavior in animals to build flexible AI systems </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Mathis,+M+W">Mackenzie Weygandt Mathis</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 10 pages, 4 figures </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Neurons and Cognition (q-bio.NC)</span>; Artificial Intelligence (cs.AI) </div> </div> </dd> <dt> <a name='item23'>[23]</a> <a href ="/abs/2411.15167" title="Abstract" id="2411.15167"> arXiv:2411.15167 </a> [<a href="/pdf/2411.15167" title="Download PDF" id="pdf-2411.15167" aria-labelledby="pdf-2411.15167">pdf</a>, <a href="/format/2411.15167" title="Other formats" id="oth-2411.15167" aria-labelledby="oth-2411.15167">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Novel Cisplatin-Magnetoliposome Complex Shows Enhanced Antitumor Activity via Hyperthermia </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Jim%C3%A9nez-L%C3%B3pez,+M+C">M. Carmen Jim茅nez-L贸pez</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Moreno-Maldonado,+A+C">Ana Carolina Moreno-Maldonado</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Mart%C3%ADn-Morales,+N">Natividad Mart铆n-Morales</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=OValle,+F">Francisco OValle</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Ibarra,+M+R">M. Ricardo Ibarra</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Goya,+G+F">Gerardo F. Goya</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Molina,+I+J">Ignacio J. Molina</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 35 pages, 7 figures </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Tissues and Organs (q-bio.TO)</span>; Soft Condensed Matter (cond-mat.soft) </div> </div> </dd> <dt> <a name='item24'>[24]</a> <a href ="/abs/2411.15163" title="Abstract" id="2411.15163"> arXiv:2411.15163 </a> [<a href="/pdf/2411.15163" title="Download PDF" id="pdf-2411.15163" aria-labelledby="pdf-2411.15163">pdf</a>, <a href="/format/2411.15163" title="Other formats" id="oth-2411.15163" aria-labelledby="oth-2411.15163">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Skin Sympathetic Nerve Activity Driver Extraction through Non-Negative Sparse Decomposition </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Baghestani,+F">Farnoush Baghestani</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Kong,+Y">Youngsun Kong</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Chon,+K+H">Ki H. Chon</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 4 pages, 2 figures, 2 tables, the 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2024) </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Neurons and Cognition (q-bio.NC)</span> </div> </div> </dd> <dt> <a name='item25'>[25]</a> <a href ="/abs/2411.16682" title="Abstract" id="2411.16682"> arXiv:2411.16682 </a> (cross-list from physics.soc-ph) [<a href="/pdf/2411.16682" title="Download PDF" id="pdf-2411.16682" aria-labelledby="pdf-2411.16682">pdf</a>, <a href="https://arxiv.org/html/2411.16682v1" title="View HTML" id="html-2411.16682" aria-labelledby="html-2411.16682" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16682" title="Other formats" id="oth-2411.16682" aria-labelledby="oth-2411.16682">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Contrasting and comparing the efficacy of non-pharmaceutical interventions on air-borne and vector-borne diseases </div> <div class='list-authors'><a href="https://arxiv.org/search/physics?searchtype=author&query=Poudyal,+B">Bibandhan Poudyal</a>, <a href="https://arxiv.org/search/physics?searchtype=author&query=Pan%C3%B5s,+D+S">David Soriano Pan玫s</a>, <a href="https://arxiv.org/search/physics?searchtype=author&query=Ghoshal,+G">Gourab Ghoshal</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 25 pages, 5 figures, 63 references. Supplementary material included </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Physics and Society (physics.soc-ph)</span>; Populations and Evolution (q-bio.PE) </div> </div> </dd> <dt> <a name='item26'>[26]</a> <a href ="/abs/2411.16644" title="Abstract" id="2411.16644"> arXiv:2411.16644 </a> (cross-list from cs.LG) [<a href="/pdf/2411.16644" title="Download PDF" id="pdf-2411.16644" aria-labelledby="pdf-2411.16644">pdf</a>, <a href="https://arxiv.org/html/2411.16644v1" title="View HTML" id="html-2411.16644" aria-labelledby="html-2411.16644" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16644" title="Other formats" id="oth-2411.16644" aria-labelledby="oth-2411.16644">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Exploring Discrete Flow Matching for 3D De Novo Molecule Generation </div> <div class='list-authors'><a href="https://arxiv.org/search/cs?searchtype=author&query=Dunn,+I">Ian Dunn</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Koes,+D+R">David R. Koes</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> Presented at the NeurIPS 2024 Machine Learning for Structural Biology Workshop </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Machine Learning (cs.LG)</span>; Biomolecules (q-bio.BM) </div> </div> </dd> <dt> <a name='item27'>[27]</a> <a href ="/abs/2411.16445" title="Abstract" id="2411.16445"> arXiv:2411.16445 </a> (cross-list from cs.CE) [<a href="/pdf/2411.16445" title="Download PDF" id="pdf-2411.16445" aria-labelledby="pdf-2411.16445">pdf</a>, <a href="https://arxiv.org/html/2411.16445v1" title="View HTML" id="html-2411.16445" aria-labelledby="html-2411.16445" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16445" title="Other formats" id="oth-2411.16445" aria-labelledby="oth-2411.16445">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Plastic Arbor: a modern simulation framework for synaptic plasticity $\unicode{x2013}$ from single synapses to networks of morphological neurons </div> <div class='list-authors'><a href="https://arxiv.org/search/cs?searchtype=author&query=Luboeinski,+J">Jannik Luboeinski</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Schmitt,+S">Sebastian Schmitt</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Kamalabad,+S+S">Shirin Shafiee Kamalabad</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Hater,+T">Thorsten Hater</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=B%C3%B6sch,+F">Fabian B枚sch</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Tetzlaff,+C">Christian Tetzlaff</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Computational Engineering, Finance, and Science (cs.CE)</span>; Neural and Evolutionary Computing (cs.NE); Neurons and Cognition (q-bio.NC) </div> </div> </dd> <dt> <a name='item28'>[28]</a> <a href ="/abs/2411.16400" title="Abstract" id="2411.16400"> arXiv:2411.16400 </a> (cross-list from math.DS) [<a href="/pdf/2411.16400" title="Download PDF" id="pdf-2411.16400" aria-labelledby="pdf-2411.16400">pdf</a>, <a href="/format/2411.16400" title="Other formats" id="oth-2411.16400" aria-labelledby="oth-2411.16400">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Pitchfork Bifurcation In A Coupled Cell System </div> <div class='list-authors'><a href="https://arxiv.org/search/math?searchtype=author&query=Raj,+S">Shikhar Raj</a>, <a href="https://arxiv.org/search/math?searchtype=author&query=Bose,+B">Biplab Bose</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 32 pages, 5 figures </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Dynamical Systems (math.DS)</span>; Chaotic Dynamics (nlin.CD); Cell Behavior (q-bio.CB) </div> </div> </dd> <dt> <a name='item29'>[29]</a> <a href ="/abs/2411.16373" title="Abstract" id="2411.16373"> arXiv:2411.16373 </a> (cross-list from physics.bio-ph) [<a href="/pdf/2411.16373" title="Download PDF" id="pdf-2411.16373" aria-labelledby="pdf-2411.16373">pdf</a>, <a href="https://arxiv.org/html/2411.16373v1" title="View HTML" id="html-2411.16373" aria-labelledby="html-2411.16373" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16373" title="Other formats" id="oth-2411.16373" aria-labelledby="oth-2411.16373">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Devil's staircase inside shrimps reveals periodicity of plateau spikes and bursts </div> <div class='list-authors'><a href="https://arxiv.org/search/physics?searchtype=author&query=Caixeta,+L+F+B">Luiz F. B. Caixeta</a>, <a href="https://arxiv.org/search/physics?searchtype=author&query=Gon%C3%A7alves,+M+H+P">Matheus H. P. Gon莽alves</a>, <a href="https://arxiv.org/search/physics?searchtype=author&query=Tragtenberg,+M+H+R">M. H. R. Tragtenberg</a>, <a href="https://arxiv.org/search/physics?searchtype=author&query=Girardi-Schappo,+M">Mauricio Girardi-Schappo</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 10 pages, 7 figures, simulations available at <a href="https://github.com/mgirardis/ktz-phasediag" rel="external noopener nofollow" class="link-external link-https">this https URL</a> </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Biological Physics (physics.bio-ph)</span>; Statistical Mechanics (cond-mat.stat-mech); Adaptation and Self-Organizing Systems (nlin.AO); Chaotic Dynamics (nlin.CD); Cell Behavior (q-bio.CB) </div> </div> </dd> <dt> <a name='item30'>[30]</a> <a href ="/abs/2411.16366" title="Abstract" id="2411.16366"> arXiv:2411.16366 </a> (cross-list from math.PR) [<a href="/pdf/2411.16366" title="Download PDF" id="pdf-2411.16366" aria-labelledby="pdf-2411.16366">pdf</a>, <a href="/format/2411.16366" title="Other formats" id="oth-2411.16366" aria-labelledby="oth-2411.16366">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Connections between sequential Bayesian inference and evolutionary dynamics </div> <div class='list-authors'><a href="https://arxiv.org/search/math?searchtype=author&query=Pathiraja,+S">Sahani Pathiraja</a>, <a href="https://arxiv.org/search/math?searchtype=author&query=Wacker,+P">Philipp Wacker</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 51 pages </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Probability (math.PR)</span>; Populations and Evolution (q-bio.PE); Methodology (stat.ME); Machine Learning (stat.ML) </div> </div> </dd> <dt> <a name='item31'>[31]</a> <a href ="/abs/2411.16349" title="Abstract" id="2411.16349"> arXiv:2411.16349 </a> (cross-list from cs.LG) [<a href="/pdf/2411.16349" title="Download PDF" id="pdf-2411.16349" aria-labelledby="pdf-2411.16349">pdf</a>, <a href="https://arxiv.org/html/2411.16349v1" title="View HTML" id="html-2411.16349" aria-labelledby="html-2411.16349" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16349" title="Other formats" id="oth-2411.16349" aria-labelledby="oth-2411.16349">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Machine learning for cerebral blood vessels' malformations </div> <div class='list-authors'><a href="https://arxiv.org/search/cs?searchtype=author&query=Topal,+I">Irem Topal</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Cherevko,+A">Alexander Cherevko</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Bugay,+Y">Yuri Bugay</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Shishlenin,+M">Maxim Shishlenin</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Barbier,+J">Jean Barbier</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Eroglu,+D">Deniz Eroglu</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Rold%C3%A1n,+%C3%89">脡dgar Rold谩n</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Belousov,+R">Roman Belousov</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 14 pages, 6 main figures, 5 supplementary figures, 2 supplementary tables </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Machine Learning (cs.LG)</span>; Statistical Mechanics (cond-mat.stat-mech); Quantitative Methods (q-bio.QM) </div> </div> </dd> <dt> <a name='item32'>[32]</a> <a href ="/abs/2411.16262" title="Abstract" id="2411.16262"> arXiv:2411.16262 </a> (cross-list from cs.AI) [<a href="/pdf/2411.16262" title="Download PDF" id="pdf-2411.16262" aria-labelledby="pdf-2411.16262">pdf</a>, <a href="https://arxiv.org/html/2411.16262v1" title="View HTML" id="html-2411.16262" aria-labelledby="html-2411.16262" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.16262" title="Other formats" id="oth-2411.16262" aria-labelledby="oth-2411.16262">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Probing for Consciousness in Machines </div> <div class='list-authors'><a href="https://arxiv.org/search/cs?searchtype=author&query=Immertreu,+M">Mathis Immertreu</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Schilling,+A">Achim Schilling</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Maier,+A">Andreas Maier</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Krauss,+P">Patrick Krauss</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Artificial Intelligence (cs.AI)</span>; Neurons and Cognition (q-bio.NC) </div> </div> </dd> <dt> <a name='item33'>[33]</a> <a href ="/abs/2411.15398" title="Abstract" id="2411.15398"> arXiv:2411.15398 </a> (cross-list from stat.ME) [<a href="/pdf/2411.15398" title="Download PDF" id="pdf-2411.15398" aria-labelledby="pdf-2411.15398">pdf</a>, <a href="https://arxiv.org/html/2411.15398v1" title="View HTML" id="html-2411.15398" aria-labelledby="html-2411.15398" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15398" title="Other formats" id="oth-2411.15398" aria-labelledby="oth-2411.15398">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> The ultimate issue error: mistaking parameters for hypotheses </div> <div class='list-authors'><a href="https://arxiv.org/search/stat?searchtype=author&query=Lazic,+S+E">Stanley E. Lazic</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Methodology (stat.ME)</span>; Quantitative Methods (q-bio.QM); Applications (stat.AP) </div> </div> </dd> <dt> <a name='item34'>[34]</a> <a href ="/abs/2411.15331" title="Abstract" id="2411.15331"> arXiv:2411.15331 </a> (cross-list from cs.LG) [<a href="/pdf/2411.15331" title="Download PDF" id="pdf-2411.15331" aria-labelledby="pdf-2411.15331">pdf</a>, <a href="https://arxiv.org/html/2411.15331v1" title="View HTML" id="html-2411.15331" aria-labelledby="html-2411.15331" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15331" title="Other formats" id="oth-2411.15331" aria-labelledby="oth-2411.15331">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> GeoScatt-GNN: A Geometric Scattering Transform-Based Graph Neural Network Model for Ames Mutagenicity Prediction </div> <div class='list-authors'><a href="https://arxiv.org/search/cs?searchtype=author&query=Zoubir,+A">Abdeljalil Zoubir</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Missaoui,+B">Badr Missaoui</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Machine Learning (cs.LG)</span>; Artificial Intelligence (cs.AI); Image and Video Processing (eess.IV); Quantitative Methods (q-bio.QM) </div> </div> </dd> <dt> <a name='item35'>[35]</a> <a href ="/abs/2411.15240" title="Abstract" id="2411.15240"> arXiv:2411.15240 </a> (cross-list from cs.LG) [<a href="/pdf/2411.15240" title="Download PDF" id="pdf-2411.15240" aria-labelledby="pdf-2411.15240">pdf</a>, <a href="/format/2411.15240" title="Other formats" id="oth-2411.15240" aria-labelledby="oth-2411.15240">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Is Attention All You Need For Actigraphy? Foundation Models of Wearable Accelerometer Data for Mental Health Research </div> <div class='list-authors'><a href="https://arxiv.org/search/cs?searchtype=author&query=Ruan,+F+Y">Franklin Y. Ruan</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Zhang,+A">Aiwei Zhang</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Oh,+J+Y">Jenny Y. Oh</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Jin,+S">SouYoung Jin</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Jacobson,+N+C">Nicholas C Jacobson</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> Supplementary material can be found at the end of the document </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Machine Learning (cs.LG)</span>; Artificial Intelligence (cs.AI); Human-Computer Interaction (cs.HC); Quantitative Methods (q-bio.QM) </div> </div> </dd> <dt> <a name='item36'>[36]</a> <a href ="/abs/2411.15215" title="Abstract" id="2411.15215"> arXiv:2411.15215 </a> (cross-list from cs.LG) [<a href="/pdf/2411.15215" title="Download PDF" id="pdf-2411.15215" aria-labelledby="pdf-2411.15215">pdf</a>, <a href="https://arxiv.org/html/2411.15215v1" title="View HTML" id="html-2411.15215" aria-labelledby="html-2411.15215" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15215" title="Other formats" id="oth-2411.15215" aria-labelledby="oth-2411.15215">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> S$^2$ALM: Sequence-Structure Pre-trained Large Language Model for Comprehensive Antibody Representation Learning </div> <div class='list-authors'><a href="https://arxiv.org/search/cs?searchtype=author&query=Yin,+M">Mingze Yin</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Zhou,+H">Hanjing Zhou</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Wu,+J">Jialu Wu</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Zhu,+Y">Yiheng Zhu</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Zhan,+Y">Yuxuan Zhan</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Kong,+Z">Zitai Kong</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Xu,+H">Hongxia Xu</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Hsieh,+C">Chang-Yu Hsieh</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Chen,+J">Jintai Chen</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Hou,+T">Tingjun Hou</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Wu,+J">Jian Wu</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Machine Learning (cs.LG)</span>; Artificial Intelligence (cs.AI); Biomolecules (q-bio.BM) </div> </div> </dd> <dt> <a name='item37'>[37]</a> <a href ="/abs/2411.15208" title="Abstract" id="2411.15208"> arXiv:2411.15208 </a> (cross-list from cs.LG) [<a href="/pdf/2411.15208" title="Download PDF" id="pdf-2411.15208" aria-labelledby="pdf-2411.15208">pdf</a>, <a href="https://arxiv.org/html/2411.15208v1" title="View HTML" id="html-2411.15208" aria-labelledby="html-2411.15208" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15208" title="Other formats" id="oth-2411.15208" aria-labelledby="oth-2411.15208">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> M2oE: Multimodal Collaborative Expert Peptide Model </div> <div class='list-authors'><a href="https://arxiv.org/search/cs?searchtype=author&query=Guo,+Z">Zengzhu Guo</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Ma,+Z">Zhiqi Ma</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> accepted by bibm 2024 </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Machine Learning (cs.LG)</span>; Artificial Intelligence (cs.AI); Biomolecules (q-bio.BM) </div> </div> </dd> <dt> <a name='item38'>[38]</a> <a href ="/abs/2411.15183" title="Abstract" id="2411.15183"> arXiv:2411.15183 </a> (cross-list from physics.chem-ph) [<a href="/pdf/2411.15183" title="Download PDF" id="pdf-2411.15183" aria-labelledby="pdf-2411.15183">pdf</a>, <a href="https://arxiv.org/html/2411.15183v1" title="View HTML" id="html-2411.15183" aria-labelledby="html-2411.15183" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15183" title="Other formats" id="oth-2411.15183" aria-labelledby="oth-2411.15183">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Balancing property optimization and constraint satisfaction for constrained multi-property molecular optimization </div> <div class='list-authors'><a href="https://arxiv.org/search/physics?searchtype=author&query=Xia,+X">Xin Xia</a>, <a href="https://arxiv.org/search/physics?searchtype=author&query=Zhang,+Y">Yajie Zhang</a>, <a href="https://arxiv.org/search/physics?searchtype=author&query=Zeng,+X">Xiangxiang Zeng</a>, <a href="https://arxiv.org/search/physics?searchtype=author&query=Zhang,+X">Xingyi Zhang</a>, <a href="https://arxiv.org/search/physics?searchtype=author&query=Zheng,+C">Chunhou Zheng</a>, <a href="https://arxiv.org/search/physics?searchtype=author&query=Su,+Y">Yansen Su</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Chemical Physics (physics.chem-ph)</span>; Artificial Intelligence (cs.AI); Biomolecules (q-bio.BM) </div> </div> </dd> <dt> <a name='item39'>[39]</a> <a href ="/abs/2411.15180" title="Abstract" id="2411.15180"> arXiv:2411.15180 </a> (cross-list from cs.LG) [<a href="/pdf/2411.15180" title="Download PDF" id="pdf-2411.15180" aria-labelledby="pdf-2411.15180">pdf</a>, <a href="https://arxiv.org/html/2411.15180v1" title="View HTML" id="html-2411.15180" aria-labelledby="html-2411.15180" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.15180" title="Other formats" id="oth-2411.15180" aria-labelledby="oth-2411.15180">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Multi-layer matrix factorization for cancer subtyping using full and partial multi-omics dataset </div> <div class='list-authors'><a href="https://arxiv.org/search/cs?searchtype=author&query=Ren,+Y">Yingxuan Ren</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Ren,+F">Fengtao Ren</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Yang,+B">Bo Yang</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Machine Learning (cs.LG)</span>; Artificial Intelligence (cs.AI); Quantitative Methods (q-bio.QM) </div> </div> </dd> </dl> <dl id='articles'> <h3>Mon, 25 Nov 2024 (showing first 11 of 22 entries )</h3> <dt> <a name='item40'>[40]</a> <a href ="/abs/2411.15105" title="Abstract" id="2411.15105"> arXiv:2411.15105 </a> [<a href="/pdf/2411.15105" title="Download PDF" id="pdf-2411.15105" aria-labelledby="pdf-2411.15105">pdf</a>, <a href="/format/2411.15105" title="Other formats" id="oth-2411.15105" aria-labelledby="oth-2411.15105">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Is there a robust effect of mainland mutualism rates on species richness of oceanic islands? </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Pichler,+M">Maximilian Pichler</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Hartig,+F">Florian Hartig</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 7 pages </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Populations and Evolution (q-bio.PE)</span>; Applications (stat.AP) </div> </div> </dd> <dt> <a name='item41'>[41]</a> <a href ="/abs/2411.15078" title="Abstract" id="2411.15078"> arXiv:2411.15078 </a> [<a href="/pdf/2411.15078" title="Download PDF" id="pdf-2411.15078" aria-labelledby="pdf-2411.15078">pdf</a>, <a href="/format/2411.15078" title="Other formats" id="oth-2411.15078" aria-labelledby="oth-2411.15078">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Functional dissociations versus post-hoc selection: Moving beyond the Stockart et al. (2024) compromise </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Schmidt,+T">Thomas Schmidt</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Lee,+X+Y">Xin Ying Lee</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Wolkersdorfer,+M+P">Maximilian P. Wolkersdorfer</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 30 pages, 3 figures. In this version, we updated the title page to include the full reference to the paper. No other changes were made </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Neurons and Cognition (q-bio.NC)</span> </div> </div> </dd> <dt> <a name='item42'>[42]</a> <a href ="/abs/2411.14969" title="Abstract" id="2411.14969"> arXiv:2411.14969 </a> [<a href="/pdf/2411.14969" title="Download PDF" id="pdf-2411.14969" aria-labelledby="pdf-2411.14969">pdf</a>, <a href="https://arxiv.org/html/2411.14969v1" title="View HTML" id="html-2411.14969" aria-labelledby="html-2411.14969" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.14969" title="Other formats" id="oth-2411.14969" aria-labelledby="oth-2411.14969">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Stabilization of macroscopic dynamics by fine-grained disorder in many-species ecosystems </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Mart%C3%ADnez,+J+G">Juan Giral Mart铆nez</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=de+Monte,+S">Silvia de Monte</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Barbier,+M">Matthieu Barbier</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 8 pages, 4 figures, 5 supplementary figures </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Populations and Evolution (q-bio.PE)</span>; Disordered Systems and Neural Networks (cond-mat.dis-nn) </div> </div> </dd> <dt> <a name='item43'>[43]</a> <a href ="/abs/2411.14801" title="Abstract" id="2411.14801"> arXiv:2411.14801 </a> [<a href="/pdf/2411.14801" title="Download PDF" id="pdf-2411.14801" aria-labelledby="pdf-2411.14801">pdf</a>, <a href="https://arxiv.org/html/2411.14801v1" title="View HTML" id="html-2411.14801" aria-labelledby="html-2411.14801" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.14801" title="Other formats" id="oth-2411.14801" aria-labelledby="oth-2411.14801">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Minimizing information loss reduces spiking neuronal networks to differential equations </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Chang,+J">Jie Chang</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Li,+Z">Zhuoran Li</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Wang,+Z">Zhongyi Wang</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Tao,+L">Louis Tao</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Xiao,+Z">Zhuo-Cheng Xiao</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 36 pages, 11 figures </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Neurons and Cognition (q-bio.NC)</span>; Dynamical Systems (math.DS) </div> </div> </dd> <dt> <a name='item44'>[44]</a> <a href ="/abs/2411.14633" title="Abstract" id="2411.14633"> arXiv:2411.14633 </a> [<a href="/pdf/2411.14633" title="Download PDF" id="pdf-2411.14633" aria-labelledby="pdf-2411.14633">pdf</a>, <a href="https://arxiv.org/html/2411.14633v1" title="View HTML" id="html-2411.14633" aria-labelledby="html-2411.14633" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.14633" title="Other formats" id="oth-2411.14633" aria-labelledby="oth-2411.14633">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Evaluating Representational Similarity Measures from the Lens of Functional Correspondence </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Bo,+Y">Yiqing Bo</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Soni,+A">Ansh Soni</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Sudhanshu">Sudhanshu Srivastava</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Khosla,+M">Meenakshi Khosla</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Neurons and Cognition (q-bio.NC)</span>; Artificial Intelligence (cs.AI); Computer Vision and Pattern Recognition (cs.CV) </div> </div> </dd> <dt> <a name='item45'>[45]</a> <a href ="/abs/2411.14603" title="Abstract" id="2411.14603"> arXiv:2411.14603 </a> [<a href="/pdf/2411.14603" title="Download PDF" id="pdf-2411.14603" aria-labelledby="pdf-2411.14603">pdf</a>, <a href="https://arxiv.org/html/2411.14603v1" title="View HTML" id="html-2411.14603" aria-labelledby="html-2411.14603" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.14603" title="Other formats" id="oth-2411.14603" aria-labelledby="oth-2411.14603">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Dynamics of an LPAA model for Tribolium Growth: Insights into Population Chaos </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Brozak,+S+J">Samantha J. Brozak</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Peralta,+S">Sophia Peralta</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Phan,+T">Tin Phan</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Nagy,+J+D">John D. Nagy</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Kuang,+Y">Yang Kuang</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 22 pages, 10 figures </div> <div class='list-journal-ref'><span class='descriptor'>Journal-ref:</span> SIAM Journal on Applied Mathematics 84(6), 2300-2320 (2024) </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Populations and Evolution (q-bio.PE)</span>; Dynamical Systems (math.DS) </div> </div> </dd> <dt> <a name='item46'>[46]</a> <a href ="/abs/2411.14602" title="Abstract" id="2411.14602"> arXiv:2411.14602 </a> [<a href="/pdf/2411.14602" title="Download PDF" id="pdf-2411.14602" aria-labelledby="pdf-2411.14602">pdf</a>, <a href="/format/2411.14602" title="Other formats" id="oth-2411.14602" aria-labelledby="oth-2411.14602">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Complexity synchronization analysis of neurophysiological data: Theory and methods </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Schizas,+I">Ioannis Schizas</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Sullivan,+S">Sabrina Sullivan</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Kerick,+S+E">Scott E. Kerick</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Mahmoodi,+K">Korosh Mahmoodi</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Bradford,+J+C">J. Cortney Bradford</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Boothe,+D+L">David L. Boothe</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Franaszczuk,+P+J">Piotr J. Franaszczuk</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Grigolini,+P">Paolo Grigolini</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=West,+B+J">Bruce J. West</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Neurons and Cognition (q-bio.NC)</span>; Adaptation and Self-Organizing Systems (nlin.AO) </div> </div> </dd> <dt> <a name='item47'>[47]</a> <a href ="/abs/2411.14588" title="Abstract" id="2411.14588"> arXiv:2411.14588 </a> [<a href="/pdf/2411.14588" title="Download PDF" id="pdf-2411.14588" aria-labelledby="pdf-2411.14588">pdf</a>, <a href="https://arxiv.org/html/2411.14588v1" title="View HTML" id="html-2411.14588" aria-labelledby="html-2411.14588" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.14588" title="Other formats" id="oth-2411.14588" aria-labelledby="oth-2411.14588">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Population dynamics of multiple ecDNA types </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Scanu,+E">Elisa Scanu</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Werner,+B">Benjamin Werner</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Huang,+W">Weini Huang</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 32 pages, 5 main figures, 7 supplementary figures </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Populations and Evolution (q-bio.PE)</span>; Quantitative Methods (q-bio.QM) </div> </div> </dd> <dt> <a name='item48'>[48]</a> <a href ="/abs/2411.14471" title="Abstract" id="2411.14471"> arXiv:2411.14471 </a> [<a href="/pdf/2411.14471" title="Download PDF" id="pdf-2411.14471" aria-labelledby="pdf-2411.14471">pdf</a>, <a href="https://arxiv.org/html/2411.14471v1" title="View HTML" id="html-2411.14471" aria-labelledby="html-2411.14471" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.14471" title="Other formats" id="oth-2411.14471" aria-labelledby="oth-2411.14471">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Leveraging Gene Expression Data and Explainable Machine Learning for Enhanced Early Detection of Type 2 Diabetes </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Roy,+A+L">Aurora Lithe Roy</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Siam,+M+K">Md Kamrul Siam</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Prova,+N+N+I">Nuzhat Noor Islam Prova</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Jahan,+S">Sumaiya Jahan</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Maruf,+A+A">Abdullah Al Maruf</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 8 pages </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Genomics (q-bio.GN)</span>; Artificial Intelligence (cs.AI) </div> </div> </dd> <dt> <a name='item49'>[49]</a> <a href ="/abs/2411.14467" title="Abstract" id="2411.14467"> arXiv:2411.14467 </a> [<a href="/pdf/2411.14467" title="Download PDF" id="pdf-2411.14467" aria-labelledby="pdf-2411.14467">pdf</a>, <a href="https://arxiv.org/html/2411.14467v1" title="View HTML" id="html-2411.14467" aria-labelledby="html-2411.14467" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.14467" title="Other formats" id="oth-2411.14467" aria-labelledby="oth-2411.14467">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Towards Scalable Insect Monitoring: Ultra-Lightweight CNNs as On-Device Triggers for Insect Camera Traps </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Gardiner,+R">Ross Gardiner</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Rowands,+S">Sareh Rowands</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Simmons,+B+I">Benno I. Simmons</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Quantitative Methods (q-bio.QM)</span>; Computer Vision and Pattern Recognition (cs.CV); Machine Learning (cs.LG); Image and Video Processing (eess.IV) </div> </div> </dd> <dt> <a name='item50'>[50]</a> <a href ="/abs/2411.14464" title="Abstract" id="2411.14464"> arXiv:2411.14464 </a> [<a href="/pdf/2411.14464" title="Download PDF" id="pdf-2411.14464" aria-labelledby="pdf-2411.14464">pdf</a>, <a href="https://arxiv.org/html/2411.14464v1" title="View HTML" id="html-2411.14464" aria-labelledby="html-2411.14464" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.14464" title="Other formats" id="oth-2411.14464" aria-labelledby="oth-2411.14464">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> JESTR: Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Kalia,+A">Apurva Kalia</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Krishnan,+D">Dilip Krishnan</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Hassoun,+S">Soha Hassoun</a></div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> 7 pages, 5 figures, 2 tables </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Quantitative Methods (q-bio.QM)</span>; Artificial Intelligence (cs.AI); Machine Learning (cs.LG); Biomolecules (q-bio.BM) </div> </div> </dd> </dl> <div class='paging'>Total of 104 entries : <span>1-50</span> <a href=/list/q-bio/recent?skip=50&show=50>51-100</a> <a href=/list/q-bio/recent?skip=100&show=50>101-104</a> </div> <div class='morefewer'>Showing up to 50 entries per page: <a href=/list/q-bio/recent?skip=0&show=25 rel="nofollow"> fewer</a> | <a href=/list/q-bio/recent?skip=0&show=100 rel="nofollow"> more</a> | <a href=/list/q-bio/recent?skip=0&show=2000 rel="nofollow"> all</a> </div> </div> </div> </div> </main> <footer style="clear: both;"> <div class="columns is-desktop" role="navigation" aria-label="Secondary" style="margin: -0.75em -0.75em 0.75em -0.75em">  <div class="column" style="padding: 0;"> <div class="columns"> <div class="column"> <ul style="list-style: none; line-height: 2;"> <li><a href="https://info.arxiv.org/about">About</a></li> <li><a href="https://info.arxiv.org/help">Help</a></li> </ul> </div> <div class="column"> <ul style="list-style: none; 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