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WA Proteomics Facility | CMCA | UWA

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role="presentation"></span> </li> <li class="breadcrumb-item last"> <a title="WA Proteomics Facility" href="/cmca/wa-proteomics-facility">WA Proteomics Facility</a> <span class="separator" role="presentation"></span> </li> </ol> </nav> </div> </div> </div> </header> <!-- /#header --> <!-- #content --> <main> <div id="content" class="grid-container full"> <div class="component promo small-12 cell"> <div class="component-content"> <div class="hero"><div class="hero-bkg"> <div class="hero-image"> <img src="/cmca/-/media/project/uwa/uwa/cmca/proteomics---hero_1920x432.png?w=1440&hash=450D01CAB365A95300E03807C4C020FE" alt="Proteomics team" sizes="(max-width: 320px) 320px, (max-width: 480px) 480px, 1440px" srcset="/cmca/-/media/project/uwa/uwa/cmca/proteomics---hero_1920x432.png?w=320&amp;hash=13B78C912C8AB8E7CA1E9B84FC30AE1B 320w,/cmca/-/media/project/uwa/uwa/cmca/proteomics---hero_1920x432.png?w=480&amp;hash=0C1BE753F38EAF76056DB78B6EE6F248 480w,/cmca/-/media/project/uwa/uwa/cmca/proteomics---hero_1920x432.png?w=1440&amp;hash=450D01CAB365A95300E03807C4C020FE 1440w" /> </div> </div><div class="hero-grid-container"><div class="hero-content-panel"><div class="hero-content"><div class="hero-copy"><h1 class="hero-title"><span class="hero-subheading">WA Proteomics Facility</span></h1><div class="hero-description field-hero-description"><p>Cutting edge proteomics services delivered through our world class expertise and state of the art instrumentation.</p></div><div class="hero-btn-container"></div></div></div></div></div></div> </div> </div> <div class="component container grid-container small-12 cell component-margin-bottom--small" > <div class="component-content grid-x grid-padding-x"> <div class="component component-heading component-heading--section small-12 cell container-padding--bottom-small"> <div class="component-content"> <h2 class="section-title field-title">About us</h2> </div> </div> <div class="component rich-text small-12 cell"> <div class="component-content"> <p>The WA Proteomics Facility is a node of Proteomics Australia based at CMCA. Services are delivered through a joint venture between The University of Western Australia and Proteomics International.</p> <p>Proteins lie at the heart of all biology. We offer cutting edge services for the analysis, identification and quantitation of proteins as well as specialist services in measuring protein synthesis and degradation rates. At Proteomics Western Australia we offer both deep expertise and a user friendly environment to help you design and execute your studies successfully while we deliver world class data and analysis on WA's state of the art infrastructure. Our enduring aim is to build successful collaborations with the life sciences sector to contribute to Australia&rsquo;s health, environmental, economic and social wellbeing.</p> <p>We can also offer support to researchers in the form of grant writing assistance and utilisation of the facility generally qualifies as an in-kind contribution from NCRIS and Bio Platforms Australia, helping your grant applications be the most competitive they can.</p> </div> </div> </div> </div> <div class="component container grid-container initial-12 cell component-margin-bottom--small" > <div class="component-content grid-x grid-padding-x"> <div class="component rich-text small-12 cell"> <div class="component-content"> <img alt="NCRIS and Bioplatforms Australia logos" src="/cmca/-/media/project/uwa/uwa/cmca/logos/ncris-and-bio.png" /> </div> </div> </div> </div> <div class="component container grid-container small-12 cell container-padding--bottom-small" > <div class="component-content grid-x grid-padding-x"> <div class="component image-liftout image-liftout--overlap small-12 cell component-margin-bottom--none"> <div class="component-content"> <div class="image-liftout-container"><figure class="image-liftout__column image-liftout__column--left"><div class="image-liftout__image-container"><div class="image-liftout__image-asset field-promoicon"><img src="/cmca/-/media/project/uwa/uwa/cmca/rich-text/wa-proteomics-facility/proteomics---our-sevices_800x535.png?h=534&amp;iar=0&amp;w=800&amp;hash=015FD313D2D3FD913E99C4C9990A1D5A" alt="Female staff member of Proteomics" width="800" height="534" loading="lazy" data-variantitemid="{8912A5B6-626C-45B9-A32F-90D934606854}" data-variantfieldname="PromoIcon" /></div></div></figure><div class="image-liftout__column image-liftout__column--right"><div class="image-liftout__content-container grid-x"><h2 class="image-liftout__content-heading">Our services</h2><div class="image-liftout__content-asset field-promotext2"><p>The services offered by the WA Proteomics Facility focus on:</p> <ul> <li>Protein identification to provide evidence to link protein to the gene that encodes it</li> <li>Label free quantitation to reveal the identity and abundance of proteins in a complex sample</li> <li>Targeted proteomics to selectively quantitate specific proteins of interest</li> <li>Flux proteomics to measure the synthesis and degradation rates of proteins</li> </ul></div><div class="btn btn--primary field-promolink"><a data-variantfieldname="PromoLink" href="/cdn-cgi/l/email-protection#6515170a11000a080c0616251012044b0001104b0410" data-variantitemid="{8912A5B6-626C-45B9-A32F-90D934606854}">Contact us</a></div></div></div></div> </div> </div> </div> </div> <div class="component container grid-container small-12 cell component-margin-bottom--none" > <div class="component-content grid-x grid-padding-x"> <div class="component tabs small-12 cell tabs--default js-tabs-scroll"> <div class="component-content"> <div class="tabs-inner"> <ul role="tablist" class="tabs-heading" aria-label=""> <li style="order:1" > <button tabindex="-1" role="tab" class="tab__button" aria-controls="panel-0F029030-1B88-438D-92FE-611BBEF2116F" aria-selected="false" id="tab-0F029030-1B88-438D-92FE-611BBEF2116F" > Label Free Quantitative Proteomics <div style="font-weight: 700; height: 0; overflow: hidden;" aria-hidden="true"> Label Free Quantitative Proteomics</div> </button> </li> <li style="order:3" > <button tabindex="-1" role="tab" class="tab__button" aria-controls="panel-56C7AC42-F7D6-4AD4-A13F-5795634C5BD5" aria-selected="false" id="tab-56C7AC42-F7D6-4AD4-A13F-5795634C5BD5" > Protein Identification <div style="font-weight: 700; height: 0; overflow: hidden;" aria-hidden="true"> Protein Identification</div> </button> </li> <li style="order:5" > <button tabindex="-1" role="tab" class="tab__button" aria-controls="panel-F7F2AEC5-A579-4EB0-8B96-DAC883C52955" aria-selected="false" id="tab-F7F2AEC5-A579-4EB0-8B96-DAC883C52955" > Targeted Proteomics <div style="font-weight: 700; height: 0; overflow: hidden;" aria-hidden="true"> Targeted Proteomics</div> </button> </li> <li style="order:7" > <button tabindex="-1" role="tab" class="tab__button" aria-controls="panel-CA797D61-7D71-436D-AC05-F90D939485F8" aria-selected="false" id="tab-CA797D61-7D71-436D-AC05-F90D939485F8" > Flux Proteomics <div style="font-weight: 700; height: 0; overflow: hidden;" aria-hidden="true"> Flux Proteomics</div> </button> </li> </ul> <div class="tabs-container"> <div tabindex="0" role="tabpanel" class="tab" id="panel-0F029030-1B88-438D-92FE-611BBEF2116F" aria-labelledby="tab-0F029030-1B88-438D-92FE-611BBEF2116F" aria-hidden="false" style="order:2" > <div class="field-content"><p>Label free relative quantitation of protein abundances offers a simple and accurate means to compare the abundance of thousands of proteins between samples. This affordable methodology is suitable for both large and small sample numbers and serves to both identify the proteins present in a sample and to measure their relative abundance. Proteins present in each sample are subjected to tryptic digestion followed by individual injection onto our state-of-the-art Orbitap instruments.</p> <p>We offer two gradient lengths with more complex samples such as whole tissue lysates being ideally suited to longer analysis to allow greater depth of coverage of proteins present and a shorter gradient for less complex samples such as immunoprecipitations and subcellular fractions.</p> <p>This service includes:</p> <ul> <li>Sample digestion</li> <li>Cleanup</li> <li>Mass spec analysis</li> <li>Followed by data processing to supply a spreadsheet of proteins present</li> <li>Their normalised relative abundances across samples</li> </ul> <p>This service can be extended to include a detailed statistical analysis of the data generated along with data visualisation.</p></div> </div> <div tabindex="0" role="tabpanel" class="tab" id="panel-56C7AC42-F7D6-4AD4-A13F-5795634C5BD5" aria-labelledby="tab-56C7AC42-F7D6-4AD4-A13F-5795634C5BD5" aria-hidden="false" style="order:4" > <div class="field-content"><p>Our protein identification service offers a cut price entry to the world of proteomics and is suitable for routine protein identification and sample quality control tasks. Analysed on a short gradient on one of our Orbitrap instruments, this service can provide an extensive list of the protein(s) present in a sample and make estimates as to the relative proportion each protein constitutes of the total sample.</p></div> </div> <div tabindex="0" role="tabpanel" class="tab" id="panel-F7F2AEC5-A579-4EB0-8B96-DAC883C52955" aria-labelledby="tab-F7F2AEC5-A579-4EB0-8B96-DAC883C52955" aria-hidden="false" style="order:6" > <div class="field-content"><p>Our targeted proteomics service allows researchers to track the abundance of a smaller number of specific proteins across multiple samples. This analysis has the advantage of allowing the highest confidence measurements of relative abundance available in proteomics as well as the ability to show that the specified proteins are absent (below the limit of detection of the instrumentation). This technique is commonly described as a mass Western but is much faster, more quantitative, not prone to cross reactivity and can generally be tailored to specific isoforms of proteins.</p> <p>This service includes:</p> <ul> <li>Sample digestion</li> <li>Cleanup</li> <li>Mass spec analysis&nbsp;</li> <li>Followed by data processing to supply a spreadsheet of proteins present</li> <li>Their normalised relative abundances across samples</li> </ul></div> </div> <div tabindex="0" role="tabpanel" class="tab" id="panel-CA797D61-7D71-436D-AC05-F90D939485F8" aria-labelledby="tab-CA797D61-7D71-436D-AC05-F90D939485F8" aria-hidden="false" style="order:8" > <div class="field-content"><p>Protein flux analysis offers the opportunity to understand how much of which proteins are being translated and degraded in your experimental system. These measurements allow a much more detailed understanding of the dynamics of protein biology than simple abundance measurements. In this methodology a pulse of stable isotope labelled substrate is fed into the experimental system which is metabolically incorporated into the amino acid pool and subsequently into newly synthesised protein. By tracking the rate of accumulation of protein with incorporated stable isotopes relative to the pre-existing unlabelled protein, both the rate of translation and degradation can be derived from a set of samples.</p></div> </div> </div> </div> </div> </div> </div> </div> <div class="component container grid-container small-12 cell" > <div class="component-content grid-x grid-padding-x"> <div class="component text-liftout text-liftout--column-single small-12 cell bkg-clr--grey full-width"> <div class="component-content"> <div class="text-liftout__column"> <div class="text-liftout__content"> <h2 class="text-liftout__heading"> <span class="text-liftout__heading--font-01"></span> <span class="text-liftout__heading--font-02">Interested in our services?</span> </h2> <div class="text-liftout__synopsis"><p>Please submit an online sample information form and one of our team members will get back to you.</p></div> <div class="btn text-liftout__btn"> <a href="https://forms.office.com/Pages/ResponsePage.aspx?id=8EqJBSjL2EaHFnTNtG4iJldKJNXvhRRJp4gA7BgfgSNUNDlLV1FJQUFaUlJBVE4yNk5NNkZYTlU0VS4u" rel="noopener noreferrer" class="" target="_self">Submit sample</a> </div> </div> </div> </div> </div> </div> </div> <div class="component container grid-container small-12 cell component-margin-bottom--small" > <div class="component-content grid-x grid-padding-x"> <div class="component image-liftout image-liftout--overlap small-12 cell component-margin-bottom--none image-liftout--alt"> <div class="component-content"> <div class="image-liftout-container"><figure class="image-liftout__column image-liftout__column--left"><div class="image-liftout__image-container"><div class="image-liftout__image-asset field-promoicon"><img src="/cmca/-/media/project/uwa/uwa/cmca/proteomics---team_cropped2.png?h=536&amp;iar=0&amp;w=800&amp;hash=B50C0197906006AC4E379AB91F3B0105" alt="Proteomics Team" width="800" height="536" loading="lazy" data-variantitemid="{7217CF43-9337-4837-9958-0C10BD24DCAB}" data-variantfieldname="PromoIcon" /></div></div></figure><div class="image-liftout__column image-liftout__column--right"><div class="image-liftout__content-container grid-x"><h2 class="image-liftout__content-heading">Our team</h2><div class="image-liftout__content-asset field-promotext2"><p>With several decades of dedicated proteomics research combined, our scientists can help you get the most out of your experiment.</p> <p>The WA proteomics team at UWA:</p> <ul> <li style="margin-top: 0.5rem;">Ritu Mehta, Research Assistant</li> <li><a rel="noopener noreferrer" href="https://research-repository.uwa.edu.au/en/persons/elke-stroeher" target="_blank">Dr Elke Stroeher</a>,聽our Facility Manager</li> <li><a rel="noopener noreferrer" href="https://research-repository.uwa.edu.au/en/persons/owen-duncan" target="_blank" style="outline-width: 0px;">Dr Owen Duncan</a>, our Scientific Lead</li> <li><a href="https://research-repository.uwa.edu.au/en/persons/harvey-millar">Professor Harvey Millar</a>, our Platform Lead</li> </ul></div></div></div></div> </div> </div> <div class="component image-liftout image-liftout--overlap small-12 cell component-margin-bottom--none"> <div class="component-content"> <div class="image-liftout-container"><figure class="image-liftout__column image-liftout__column--left"><div class="image-liftout__image-container"><div class="image-liftout__image-asset field-promoicon"><img src="/cmca/-/media/project/uwa/uwa/cmca/proteomics---instruments_800x534.png?h=534&amp;iar=0&amp;w=800&amp;hash=9FFD914954C90E1A4DCB554920D15341" alt="Proteomics staff member using Proteomics equipment" width="800" height="534" loading="lazy" data-variantitemid="{BBDEC66E-025B-46FE-BD30-9FA6D94AA302}" data-variantfieldname="PromoIcon" /></div></div></figure><div class="image-liftout__column image-liftout__column--right"><div class="image-liftout__content-container grid-x"><h2 class="image-liftout__content-heading">Our instruments</h2><div class="image-liftout__content-asset field-promotext2"><p>The Proteomics Facility house some of the most powerful instruments available for delivering quantitative proteomics and flux proteomics services.</p> <ul> <li>Thermo Fisher Orbitrap Fusion</li> <li>Exploris 480</li> <li>Triple quadrupole instruments</li> </ul> <p>If you want to understand more about proteomics and how it can relate to your biological questions, contact <a href="/cdn-cgi/l/email-protection#7f0f0d100b1a1012161c0c3f0a081e511a1b0a511e0a"><span class="__cf_email__" data-cfemail="364644594253595b5f55457643415718535243185743">[email&#160;protected]</span></a>.</p></div></div></div></div> </div> </div> </div> </div> <div class="component container grid-container small-12 cell" > <div class="component-content grid-x grid-padding-x"> <div class="component component-heading component-heading--section small-12 cell container-padding--bottom-small"> <div class="component-content"> <h2 class="section-title field-title">FAQ</h2> </div> </div> <div class="component accordion small-12 cell" data-properties='{&quot;expandOnHover&quot;:false,&quot;expandedByDefault&quot;:false,&quot;speed&quot;:500,&quot;easing&quot;:&quot;swing&quot;,&quot;canOpenMultiple&quot;:true,&quot;canToggle&quot;:true,&quot;isControlEditable&quot;:false}'> <div class="component-content"> <div> <ul class="items"> <li class="item"> <a href="#" class="toggle-header"> <div class="label"> How much sample do I need to submit? </div> </a> <div class="toggle-content"> <div class="field-content"><p>Our sample requirements vary depending on what is needed from the analysis and how expensive it is to generate. 1x10^6 for most mammalian cell types is a good starting point but we can generate good data with tens of thousands of cells if that's what is available. For other sample types, we typically ask for 100ug of protein for complex (contains many different proteins) samples such as cell lysates or a few micrograms for simple samples such as immuno-precipitations.</p></div> </div> </li> <li class="item"> <a href="#" class="toggle-header"> <div class="label"> How should I prepare my samples? </div> </a> <div class="toggle-content"> <div class="field-content"><p>We typically like to receive cell pellets, supernatant removed, then snap frozen and dropped off to the Bayliss building foyer at a time arranged with staff. Where this is not applicable, please contact us so we can give specific advice.</p></div> </div> </li> <li class="item"> <a href="#" class="toggle-header"> <div class="label"> How much does your service cost? </div> </a> <div class="toggle-content"> <div class="field-content"><p>A few examples of pricing for non-commercial research, label free quantitation runs would be:</p> <ul> <li>6 samples ~$1000</li> <li>24 samples ~$3000</li> </ul></div> </div> </li> <li class="item"> <a href="#" class="toggle-header"> <div class="label"> What does your service include? </div> </a> <div class="toggle-content"> <div class="field-content"><p>The standard label free quant service includes protein extraction, quantitation, digestion and sample prep then run on a 90 min LC gradient on one of our orbitraps. Results are provided as a spreadsheet with rows being proteins identified and columns being the samples provided. We can also analyse and provide differential expression results though a bioinformatics fee may be invoked if it's an involved analysis.</p></div> </div> </li> <li class="item"> <a href="#" class="toggle-header"> <div class="label"> Can I ask other questions? </div> </a> <div class="toggle-content"> <div class="field-content">Of course! email <a href="/cdn-cgi/l/email-protection#a5d5d7cad1c0cac8ccc6d6e5d0d2c48bc0c1d08bc4d0"><span class="__cf_email__" data-cfemail="1e6e6c716a7b7173777d6d5e6b697f307b7a6b307f6b">[email&#160;protected]</span></a> and we will endeavour to answer swiftly.</div> </div> </li> </ul> </div> </div> </div> <div class="component component-heading component-heading--section small-12 cell container-padding--bottom-small"> <div class="component-content"> <h2 class="section-title field-title">Location and contact</h2> </div> </div> <div class="component rich-text small-12 medium-6 cell"> <div class="component-content"> <strong>Email:</strong><br /> <a 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