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</div> </div><div class="element-hidden"><div class="form-item form-item-label-before form-type-checkboxes form-item-flag"> <label for="edit-flag">Include Only: </label> <div id="edit-flag" class="form-checkboxes element-hidden"><div class="form-item form-item-label-after form-type-checkbox form-item-flag-OPENACCESS"> <input class="element-hidden form-checkbox" type="checkbox" id="edit-flag-openaccess" name="flag[OPENACCESS]" value="OPENACCESS" /> <label class="option" for="edit-flag-openaccess"> Open Access Articles </label> </div> <div class="form-item form-item-label-after form-type-checkbox form-item-flag-HWREVIEW"> <input class="element-hidden form-checkbox" type="checkbox" id="edit-flag-hwreview" name="flag[HWREVIEW]" value="HWREVIEW" /> <label class="option" for="edit-flag-hwreview"> Review Articles </label> </div> </div> </div> </div></div></fieldset> <fieldset class="collapsible form-wrapper" id="edit-keywords"><legend><span class="fieldset-legend">Authors, Keywords</span></legend><div class="fieldset-wrapper"><div class="fieldset-description">Search for specific authors and/or words and phrases.</div><div class="form-item form-item-label-before form-type-textfield form-item-author1"> <label for="edit-author1">Author </label> <input type="text" id="edit-author1" name="author1" value="Fajie Yuan" size="60" maxlength="128" class="form-text" /> <div class="description">e.g., Smith, JS</div> </div> <div class="form-item form-item-label-before form-type-textfield form-item-author2"> <label for="edit-author2">Author </label> <input type="text" id="edit-author2" name="author2" value="" size="60" maxlength="128" class="form-text" /> <div class="description">e.g., Smith, JS</div> </div> <div class="form-item form-item-label-before form-type-textfield form-item-title"> <label for="edit-title">Title </label> <input type="text" id="edit-title" name="title" value="" size="60" maxlength="128" class="form-text" /> <div class="description">Type any phrase that appears in the article title</div> </div> <div class="form-item form-item-label-before form-type-radios form-item-title-flags"> <label for="edit-title-flags">words </label> <div id="edit-title-flags" class="form-radios"><div class="form-item form-item-label-after form-type-radio form-item-title-flags"> <input type="radio" id="edit-title-flags-match-any" name="title_flags" value="match-any" class="form-radio" /> <label class="option" for="edit-title-flags-match-any">any </label> </div> <div class="form-item form-item-label-after form-type-radio form-item-title-flags"> <input type="radio" id="edit-title-flags-match-all" name="title_flags" value="match-all" checked="checked" class="form-radio" /> <label class="option" for="edit-title-flags-match-all">all </label> </div> <div class="form-item form-item-label-after form-type-radio form-item-title-flags"> <input type="radio" id="edit-title-flags-match-phrase" name="title_flags" value="match-phrase" class="form-radio" /> <label 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form-item-label-after form-type-radio form-item-abstract-title-flags"> <input type="radio" id="edit-abstract-title-flags-match-all" name="abstract_title_flags" value="match-all" checked="checked" class="form-radio" /> <label class="option" for="edit-abstract-title-flags-match-all">all </label> </div> <div class="form-item form-item-label-after form-type-radio form-item-abstract-title-flags"> <input type="radio" id="edit-abstract-title-flags-match-phrase" name="abstract_title_flags" value="match-phrase" class="form-radio" /> <label class="option" for="edit-abstract-title-flags-match-phrase">phrase </label> </div> </div> </div> <div class="form-item form-item-label-before form-type-textfield form-item-text-abstract-title"> <label for="edit-text-abstract-title">Full Text or Abstract or Title </label> <input type="text" id="edit-text-abstract-title" name="text_abstract_title" value="" size="60" maxlength="128" class="form-text" /> <div class="description">Type any phrase that appears within article body, title or abstract</div> </div> <div class="form-item form-item-label-before form-type-radios form-item-text-abstract-title-flags"> <label for="edit-text-abstract-title-flags">words </label> <div id="edit-text-abstract-title-flags" class="form-radios"><div class="form-item form-item-label-after form-type-radio form-item-text-abstract-title-flags"> <input type="radio" id="edit-text-abstract-title-flags-match-any" name="text_abstract_title_flags" value="match-any" class="form-radio" /> <label class="option" for="edit-text-abstract-title-flags-match-any">any </label> </div> <div class="form-item form-item-label-after form-type-radio form-item-text-abstract-title-flags"> <input type="radio" id="edit-text-abstract-title-flags-match-all" name="text_abstract_title_flags" value="match-all" checked="checked" class="form-radio" /> <label class="option" for="edit-text-abstract-title-flags-match-all">all </label> </div> <div class="form-item form-item-label-after form-type-radio form-item-text-abstract-title-flags"> <input type="radio" id="edit-text-abstract-title-flags-match-phrase" name="text_abstract_title_flags" value="match-phrase" class="form-radio" /> <label class="option" for="edit-text-abstract-title-flags-match-phrase">phrase </label> </div> </div> </div> <div class="element-hidden"><div class="form-item form-item-label-before form-type-textfield form-item-references"> <label for="edit-references">Bibliography </label> <input class="element-hidden form-text" type="text" id="edit-references" name="references" value="" size="60" maxlength="128" /> <div class="description">e.g., Smith, JS</div> </div> </div><div class="element-hidden"><div class="form-item form-item-label-before form-type-radios form-item-references-flags"> <label for="edit-references-flags">words </label> <div id="edit-references-flags" class="form-radios element-hidden"><div class="form-item form-item-label-after form-type-radio form-item-references-flags"> <input 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for="edit-publisher">Publisher </label> <select class="element-hidden form-select" id="edit-publisher" name="publisher"><option value="" selected="selected"> - All Publishers - </option></select> <div class="description">Book publisher name</div> </div> </div></div></fieldset> <fieldset class="collapsible form-wrapper" id="edit-citation"><legend><span class="fieldset-legend">Citation</span></legend><div class="fieldset-wrapper"><div class="fieldset-description">Citation-specific search information</div><div class="element-hidden"><div class="form-item form-item-label-before form-type-textfield form-item-pubyear"> <label for="edit-pubyear">Year </label> <input class="element-hidden form-text" type="text" id="edit-pubyear" name="pubyear" value="" size="60" maxlength="128" /> <div class="description">e.g., 2009</div> </div> </div><div class="element-hidden"><div class="form-item form-item-label-before form-type-textfield form-item-volume"> <label for="edit-volume">Volume </label> <input class="element-hidden form-text" type="text" id="edit-volume" name="volume" value="" size="60" maxlength="128" /> <div class="description">e.g., 20</div> </div> </div><div class="element-hidden"><div class="form-item form-item-label-before form-type-textfield form-item-issue"> <label for="edit-issue">Issue </label> <input class="element-hidden form-text" type="text" id="edit-issue" name="issue" value="" size="60" maxlength="128" /> <div class="description">e.g., 3</div> </div> </div><div class="element-hidden"><div class="form-item form-item-label-before form-type-textfield form-item-firstpage"> <label for="edit-firstpage">First page </label> <input class="element-hidden form-text" type="text" id="edit-firstpage" name="firstpage" value="" size="60" maxlength="128" /> <div class="description">e.g., 29</div> </div> </div><div class="form-item form-item-label-before form-type-textfield form-item-doi"> <label for="edit-doi">DOI </label> <input type="text" id="edit-doi" name="doi" value="" 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search-result-highwire-citation"><div class="highwire-article-citation highwire-citation-type-highwire-article node-biorxiv-early-2024-11-06-20241104621604" data-pisa="biorxiv;2024.11.04.621604v1" data-pisa-master="biorxiv;2024.11.04.621604" data-apath="/biorxiv/early/2024/11/06/2024.11.04.621604.atom" id="node-biorxivearly2024110620241104621604atom1455376398"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2024.11.04.621604v1" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">A comprehensive foundation model for cryo-EM image processing</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Yang</span> <span class="nlm-surname">Yan</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Shiqi</span> <span class="nlm-surname">Fan</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Fajie</span> <span class="nlm-surname">Yuan</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Huaizong</span> <span class="nlm-surname">Shen</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">bioRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2024.11.04.621604; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2024.11.04.621604 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-0" class = "hw-make-citation" data-encoded-apath=";biorxiv;early;2024;11;06;2024.11.04.621604.atom" data-seqnum="0"><a href="/highwire-save-citation/saveapath/%3Bbiorxiv%3Bearly%3B2024%3B11%3B06%3B2024.11.04.621604.atom/nojs/0" id="link-save-citation-toggle-0" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="even search-result result-jcode-biorxiv search-result-highwire-citation"><div class="highwire-article-citation highwire-citation-type-highwire-article node-biorxiv-early-2024-09-11-20240530596740" data-pisa="biorxiv;2024.05.30.596740v2" data-pisa-master="biorxiv;2024.05.30.596740" data-seqnum="1" data-apath="/biorxiv/early/2024/09/11/2024.05.30.596740.atom" id="node-biorxivearly2024091120240530596740atom1737004002"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2024.05.30.596740v2" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Jin</span> <span class="nlm-surname">Su</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Xibin</span> <span class="nlm-surname">Zhou</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Xuting</span> <span class="nlm-surname">Zhang</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Fajie</span> <span class="nlm-surname">Yuan</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">bioRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2024.05.30.596740; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2024.05.30.596740 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-1" class = "hw-make-citation" data-encoded-apath=";biorxiv;early;2024;09;11;2024.05.30.596740.atom" data-seqnum="1"><a href="/highwire-save-citation/saveapath/%3Bbiorxiv%3Bearly%3B2024%3B09%3B11%3B2024.05.30.596740.atom/nojs/1" id="link-save-citation-toggle-1" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="odd search-result result-jcode-biorxiv search-result-highwire-citation"><div class="highwire-article-citation highwire-citation-type-highwire-article node-biorxiv-early-2024-09-11-20240524595648" data-pisa="biorxiv;2024.05.24.595648v4" data-pisa-master="biorxiv;2024.05.24.595648" data-seqnum="2" data-apath="/biorxiv/early/2024/09/11/2024.05.24.595648.atom" id="node-biorxivearly2024091120240524595648atom1038285140"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2024.05.24.595648v4" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">SaprotHub: Making Protein Modeling Accessible to All Biologists</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Jin</span> <span class="nlm-surname">Su</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Zhikai</span> <span class="nlm-surname">Li</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Chenchen</span> <span class="nlm-surname">Han</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Yuyang</span> <span class="nlm-surname">Zhou</span></span>, <span class="highwire-citation-author" data-delta="4"><span class="nlm-given-names">Yan</span> <span class="nlm-surname">He</span></span>, <span class="highwire-citation-author" data-delta="5"><span class="nlm-given-names">Junjie</span> <span class="nlm-surname">Shan</span></span>, <span class="highwire-citation-author" data-delta="6"><span class="nlm-given-names">Xibin</span> <span class="nlm-surname">Zhou</span></span>, <span class="highwire-citation-author" data-delta="7"><span class="nlm-given-names">Xing</span> <span class="nlm-surname">Chang</span></span>, <span class="highwire-citation-author" data-delta="8"><span class="nlm-given-names">Dacheng</span> <span class="nlm-surname">Ma</span></span>, <span class="highwire-citation-author" data-delta="9"><span class="nlm-collab" data-hwp-id="collab-1">The OPMC</span></span>, <span class="highwire-citation-author" data-delta="10"><span class="nlm-given-names">Martin</span> <span class="nlm-surname">Steinegger</span></span>, <span class="highwire-citation-author" data-delta="11"><span class="nlm-given-names">Sergey</span> <span class="nlm-surname">Ovchinnikov</span></span>, <span class="highwire-citation-author" data-delta="12"><span class="nlm-given-names">Fajie</span> <span class="nlm-surname">Yuan</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">bioRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2024.05.24.595648; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2024.05.24.595648 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-2" class = "hw-make-citation" data-encoded-apath=";biorxiv;early;2024;09;11;2024.05.24.595648.atom" data-seqnum="2"><a href="/highwire-save-citation/saveapath/%3Bbiorxiv%3Bearly%3B2024%3B09%3B11%3B2024.05.24.595648.atom/nojs/2" id="link-save-citation-toggle-2" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="even search-result result-jcode-biorxiv search-result-highwire-citation"><div class="highwire-article-citation highwire-citation-type-highwire-article node-biorxiv-early-2024-08-02-20240801606258" data-pisa="biorxiv;2024.08.01.606258v1" data-pisa-master="biorxiv;2024.08.01.606258" data-seqnum="3" data-apath="/biorxiv/early/2024/08/02/2024.08.01.606258.atom" id="node-biorxivearly2024080220240801606258atom1325313578"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2024.08.01.606258v1" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">Toward <em>De Novo</em> Protein Design from Natural Language</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Fengyuan</span> <span class="nlm-surname">Dai</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Yuliang</span> <span class="nlm-surname">Fan</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Jin</span> <span class="nlm-surname">Su</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Chentong</span> <span class="nlm-surname">Wang</span></span>, <span 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<span class="highwire-citation-author" data-delta="11"><span class="nlm-given-names">Fajie</span> <span class="nlm-surname">Yuan</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">bioRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2024.08.01.606258; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2024.08.01.606258 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-3" class = "hw-make-citation" data-encoded-apath=";biorxiv;early;2024;08;02;2024.08.01.606258.atom" data-seqnum="3"><a href="/highwire-save-citation/saveapath/%3Bbiorxiv%3Bearly%3B2024%3B08%3B02%3B2024.08.01.606258.atom/nojs/3" id="link-save-citation-toggle-3" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="odd search-result result-jcode-biorxiv search-result-highwire-citation"><div class="highwire-article-citation highwire-citation-type-highwire-article node-biorxiv-early-2024-04-19-20231001560349" data-pisa="biorxiv;2023.10.01.560349v5" data-pisa-master="biorxiv;2023.10.01.560349" data-seqnum="4" data-apath="/biorxiv/early/2024/04/19/2023.10.01.560349.atom" id="node-biorxivearly2024041920231001560349atom766015373"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2023.10.01.560349v5" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">SaProt: Protein Language Modeling with Structure-aware Vocabulary</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Jin</span> <span class="nlm-surname">Su</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Chenchen</span> <span class="nlm-surname">Han</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Yuyang</span> <span class="nlm-surname">Zhou</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Junjie</span> <span class="nlm-surname">Shan</span></span>, <span class="highwire-citation-author" data-delta="4"><span class="nlm-given-names">Xibin</span> <span class="nlm-surname">Zhou</span></span>, <span class="highwire-citation-author" data-delta="5"><span class="nlm-given-names">Fajie</span> <span class="nlm-surname">Yuan</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">bioRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2023.10.01.560349; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2023.10.01.560349 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-4" class = "hw-make-citation" data-encoded-apath=";biorxiv;early;2024;04;19;2023.10.01.560349.atom" data-seqnum="4"><a href="/highwire-save-citation/saveapath/%3Bbiorxiv%3Bearly%3B2024%3B04%3B19%3B2023.10.01.560349.atom/nojs/4" id="link-save-citation-toggle-4" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="even search-result result-jcode-biorxiv search-result-highwire-citation"><div class="highwire-article-citation highwire-citation-type-highwire-article node-biorxiv-early-2023-10-29-20231029564583" data-pisa="biorxiv;2023.10.29.564583v1" data-pisa-master="biorxiv;2023.10.29.564583" data-seqnum="5" data-apath="/biorxiv/early/2023/10/29/2023.10.29.564583.atom" id="node-biorxivearly2023102920231029564583atom1682011471"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2023.10.29.564583v1" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">Protein language models-assisted engineering of Uracil-N glycosylase enables programmable T-to-G and T-to-C base editing</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Yan</span> <span class="nlm-surname">He</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Xibin</span> <span class="nlm-surname">Zhou</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Chong</span> <span class="nlm-surname">Chang</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Ge</span> <span class="nlm-surname">Chen</span></span>, <span class="highwire-citation-author" data-delta="4"><span class="nlm-given-names">Weikuan</span> <span class="nlm-surname">Liu</span></span>, <span class="highwire-citation-author" data-delta="5"><span class="nlm-given-names">Geng</span> <span class="nlm-surname">Li</span></span>, <span class="highwire-citation-author" data-delta="6"><span class="nlm-given-names">Xiaoqi</span> <span class="nlm-surname">Fan</span></span>, <span class="highwire-citation-author" data-delta="7"><span class="nlm-given-names">Yunqing</span> <span class="nlm-surname">Ma</span></span>, <span class="highwire-citation-author" data-delta="8"><span class="nlm-given-names">Fajie</span> <span class="nlm-surname">Yuan</span></span>, <span class="highwire-citation-author" data-delta="9"><span class="nlm-given-names">Xing</span> <span class="nlm-surname">Chang</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">bioRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2023.10.29.564583; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2023.10.29.564583 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-5" class = "hw-make-citation" data-encoded-apath=";biorxiv;early;2023;10;29;2023.10.29.564583.atom" data-seqnum="5"><a href="/highwire-save-citation/saveapath/%3Bbiorxiv%3Bearly%3B2023%3B10%3B29%3B2023.10.29.564583.atom/nojs/5" id="link-save-citation-toggle-5" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="odd search-result result-jcode-biorxiv search-result-highwire-citation"><div class="highwire-article-citation highwire-citation-type-highwire-article node-biorxiv-early-2023-09-26-20230925559190" data-pisa="biorxiv;2023.09.25.559190v1" data-pisa-master="biorxiv;2023.09.25.559190" data-seqnum="6" data-apath="/biorxiv/early/2023/09/26/2023.09.25.559190.atom" id="node-biorxivearly2023092620230925559190atom186446646"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2023.09.25.559190v1" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">Generative Diffusion Models for Antibody Design, Docking, and Optimization</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Zhangzhi</span> <span class="nlm-surname">Peng</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Chenchen</span> <span class="nlm-surname">Han</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Xiaohan</span> <span class="nlm-surname">Wang</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Dapeng</span> <span class="nlm-surname">Li</span></span>, <span class="highwire-citation-author" data-delta="4"><span class="nlm-given-names">Fajie</span> <span class="nlm-surname">Yuan</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">bioRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2023.09.25.559190; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2023.09.25.559190 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-6" class = "hw-make-citation" data-encoded-apath=";biorxiv;early;2023;09;26;2023.09.25.559190.atom" data-seqnum="6"><a href="/highwire-save-citation/saveapath/%3Bbiorxiv%3Bearly%3B2023%3B09%3B26%3B2023.09.25.559190.atom/nojs/6" id="link-save-citation-toggle-6" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="even search-result result-jcode-biorxiv search-result-highwire-citation"><div class="highwire-article-citation highwire-citation-type-highwire-article node-biorxiv-early-2023-04-04-20230402534383" data-pisa="biorxiv;2023.04.02.534383v1" data-pisa-master="biorxiv;2023.04.02.534383" data-seqnum="7" data-apath="/biorxiv/early/2023/04/04/2023.04.02.534383.atom" id="node-biorxivearly2023040420230402534383atom1912336949"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2023.04.02.534383v1" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">SEQUENCE VS. STRUCTURE: DELVING DEEP INTO DATA-DRIVEN PROTEIN FUNCTION PREDICTION</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Xiaochen</span> <span class="nlm-surname">Tian</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Ziyin</span> <span class="nlm-surname">Wang</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Kevin K.</span> <span class="nlm-surname">Yang</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Jin</span> <span class="nlm-surname">Su</span></span>, <span class="highwire-citation-author" data-delta="4"><span class="nlm-given-names">Hanwen</span> <span class="nlm-surname">Du</span></span>, <span class="highwire-citation-author" data-delta="5"><span class="nlm-given-names">Qiuguo</span> <span class="nlm-surname">Zheng</span></span>, <span class="highwire-citation-author" data-delta="6"><span class="nlm-given-names">Guibing</span> <span class="nlm-surname">Guo</span></span>, <span class="highwire-citation-author" data-delta="7"><span class="nlm-given-names">Min</span> <span class="nlm-surname">Yang</span></span>, <span class="highwire-citation-author" data-delta="8"><span class="nlm-given-names">Fei</span> <span class="nlm-surname">Yang</span></span>, <span class="highwire-citation-author" data-delta="9"><span class="nlm-given-names">Fajie</span> <span class="nlm-surname">Yuan</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">bioRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2023.04.02.534383; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2023.04.02.534383 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-7" class = "hw-make-citation" data-encoded-apath=";biorxiv;early;2023;04;04;2023.04.02.534383.atom" data-seqnum="7"><a href="/highwire-save-citation/saveapath/%3Bbiorxiv%3Bearly%3B2023%3B04%3B04%3B2023.04.02.534383.atom/nojs/7" id="link-save-citation-toggle-7" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="odd search-result result-jcode-biorxiv search-result-highwire-citation"><div class="highwire-article-citation highwire-citation-type-highwire-article node-biorxiv-early-2023-03-23-20221228522150" data-pisa="biorxiv;2022.12.28.522150v2" data-pisa-master="biorxiv;2022.12.28.522150" data-seqnum="8" data-apath="/biorxiv/early/2023/03/23/2022.12.28.522150.atom" id="node-biorxivearly2023032320221228522150atom621075423"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2022.12.28.522150v2" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">Ultra-Accurate Classification and Discovery of Functional Protein-Coding Genes from Microbiomes Using FunGeneTyper: An Expandable Deep Learning-Based Framework</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Guoqing</span> <span class="nlm-surname">Zhang</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Hui</span> <span class="nlm-surname">Wang</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Zhiguo</span> <span class="nlm-surname">Zhang</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Lu</span> <span class="nlm-surname">Zhang</span></span>, <span class="highwire-citation-author" data-delta="4"><span class="nlm-given-names">Guibing</span> <span class="nlm-surname">Guo</span></span>, <span class="highwire-citation-author" data-delta="5"><span class="nlm-given-names">Jian</span> <span class="nlm-surname">Yang</span></span>, <span class="highwire-citation-author" data-delta="6"><span class="nlm-given-names">Fajie</span> <span class="nlm-surname">Yuan</span></span>, <span class="highwire-citation-author" data-delta="7"><span class="nlm-given-names">Feng</span> <span class="nlm-surname">Ju</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">bioRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2022.12.28.522150; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2022.12.28.522150 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-8" class = "hw-make-citation" data-encoded-apath=";biorxiv;early;2023;03;23;2022.12.28.522150.atom" data-seqnum="8"><a href="/highwire-save-citation/saveapath/%3Bbiorxiv%3Bearly%3B2023%3B03%3B23%3B2022.12.28.522150.atom/nojs/8" id="link-save-citation-toggle-8" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="last even search-result result-jcode-biorxiv search-result-highwire-citation"><div class="highwire-article-citation highwire-citation-type-highwire-article node-biorxiv-early-2022-11-20-20220930510294" data-pisa="biorxiv;2022.09.30.510294v3" data-pisa-master="biorxiv;2022.09.30.510294" data-seqnum="9" data-apath="/biorxiv/early/2022/11/20/2022.09.30.510294.atom" id="node-biorxivearly2022112020220930510294atom1330793959"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2022.09.30.510294v3" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">Protein Language Model Predicts Mutation Pathogenicity and Clinical Prognosis</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Xiangling</span> <span class="nlm-surname">Liu</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Xinyu</span> <span class="nlm-surname">Yang</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Linkun</span> <span class="nlm-surname">Ouyang</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Guibing</span> <span class="nlm-surname">Guo</span></span>, <span class="highwire-citation-author" data-delta="4"><span class="nlm-given-names">Jin</span> <span class="nlm-surname">Su</span></span>, <span class="highwire-citation-author" data-delta="5"><span class="nlm-given-names">Ruibin</span> <span class="nlm-surname">Xi</span></span>, <span class="highwire-citation-author" data-delta="6"><span class="nlm-given-names">Ke</span> <span class="nlm-surname">Yuan</span></span>, <span class="highwire-citation-author" data-delta="7"><span class="nlm-given-names">Fajie</span> <span class="nlm-surname">Yuan</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">bioRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2022.09.30.510294; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span 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