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ITIS - TWB File Format

<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> <html lang="en-US"> <head> <title>ITIS - TWB File Format</title> <link rel="shortcut icon" type="image/jpg" href="/Static/images/favicon.ico" /> <meta http-equiv="Content-Type" content="text/html;"> <link rel="stylesheet" href="/Static/css/itisstyle.css" type="text/css"> <!-- menu support --> <!--- upgrade to most recent version of JQuery and third party jquery menu libraries--> <!-- dev jquery libraries --> <!-- <script type="text/javascript" src="/Static/javascript/jquery-3.5.1.js"></script> <script type="text/javascript" src="/Static/javascript/jquery-migrate-3.3.2.js"></script> --> <!--prod jquery libraries --> <script type="text/javascript" src="/Static/javascript/jquery-3.5.1.min.js"></script> <script type="text/javascript" src="/Static/javascript/jquery-migrate-3.3.2.min.js"></script> <script type="text/javascript" src="/Static/javascript/superfish-2013.js"></script> <script type="text/javascript" src="/Static/javascript/supersubs-2013.js"></script> <script type="text/javascript" src="/Static/javascript/hoverIntent.js"></script> <link rel="stylesheet" type="text/css" href="/Static/css/superfish-2013.css" media="screen"> <link rel="stylesheet" type="text/css" href="/Static/css/superfish-vertical-2013.css" media="screen"> <script type="text/javascript"> var winPath = window.location.pathname.substring(1); var operation = winPath.toLowerCase().substr(8, 6); // initialise plugins $(document).ready(function(){ $("ul.sf-menu").supersubs({ minWidth: 5, // minimum width of sub-menus in em units maxWidth: 15, // maximum width of sub-menus in em units extraWidth: 1 // extra width can ensure lines don't sometimes turn over // due to slight rounding differences and font-family }).superfish({ animation: {height:'show'}, // slide-down effect without fade-in delay: 1200 // 1.2 second delay on mouseout }); // call supersubs first, then superfish, so that subs are // not display:none when measuring. 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"> </head> <body bgcolor="#ffffff" class="subpage" leftmargin="0" topmargin="0" marginheight="0" marginwidth="0"> <table border="0" cellpadding="0" cellspacing="0" role="presentation"> <tbody> <tr> <td colspan="3" valign="bottom"> <img name="toplogo" src="/Static/images/ITIS-Logo.jpg" class="itis-logo" alt="The ITIS Logo" border="0" hspace="0" vspace="0"> <h1 class="itis-title">Integrated Taxonomic Information System - TWB File Format</h1> </td> </tr> <tr> <td width="115" valign="top"> <!-- menu --> <ul class="sf-menu sf-vertical"> <li class="current"> <a href="/">Home</a> </li> <li class="current"> <a href="#">About</a> <ul> <li> <a href="/about_itis.html">Mission</a> </li> <li> <a href="/whatsnew.html">What's New</a> </li> <li><a href="#">Organizational Information</a> <ul> <li> <a href="/info.html">History</a> </li> <li> <a href="/organ.html">Organization and Partners</a> </li> <li> <a href="/mou.html">Memorandum of Understanding</a> </li> <li> <a href="/itis_primer.html">Data Development History</a> </li> </ul> </li> <li> <a href="#">Data Definition and Standards</a> <ul> <li> <a href="/standard.html">Standards</a> </li> <li> <a href="/data_definition.html">Data Definition</a> </li> </ul> </li> <li> <a href="#">Frequently Asked Questions</a> <ul> <li> <a href="/pdf/faq_itis_tsn.pdf">What is an ITIS TSN?</a> </li> <li> <a href="/citation.html">How Do I Cite ITIS?</a> </li> <li> <a href="/standard_report_link.html">How Do I Link to ITIS?</a> </li> <li> <a href="/download_format.html">What is the format of a download file?</a> </li> </ul> </li> <li> <a href="/comments.html">Contact Us</a> </li> </ul> </li> <li> <a href="#">Data Access and Tools</a> <ul> <li> <a href="/access.html">Data Access Information</a> </li> <li> <a href="/tools.html">ITIS Tools</a> </li> <li> <a href="/advanced_search.html">Advanced Search</a> </li> <li> <a href="#">Web Services</a> <ul> <li> <a href="/web_service.html">Web Service Information</a> </li> <li> <a href="/ws_description.html">Description of ITIS Web Services</a> </li> <li> <a href="/ws_develop.html">Developing a Client</a> </li> <li> <a href="/solr_documentation.html">ITIS Solr Web Services</a> </li> <li> <a href="/solr_examples.html">ITIS Solr WS Examples</a> </li> </ul> </li> <li> <a href="/hierarchy.html">Hierarchical Report</a> </li> <li> <a href="/taxmatch.html">Compare Names</a> </li> </ul> </li> <li> <a href="#">Get ITIS Data</a> <ul> <li> <a href="#">Full Database Download</a> <ul> <li> <a href="/ftp_download.html">Instructions</a> </li> <li> <a href="/downloads/index.html">Database Files</a> </li> </ul> </li> <li> <a href="/download.html">Download Data in TWB Format</a> </li> </ul> </li> <li> <a href="#">Become a Data Partner</a> <ul> <li> <a href="/contribute.html">Contribute</a> </li> <li> <a href="/twb.html">Taxonomic Workbench Help</a> </li> </ul> </li> </ul> </td> <td><img src="/Static/images/spacer.gif" width="1" height="230" border="0" alt="spacer image"></td> <td bgcolor="#ffffff" valign="top"> <!-- #BeginEditable "subtext" --> <div style="body;width:600px"> <h3>ITIS TWB File Format</h3> <p>The file you download from <a href="/download.html">Download a Specific Taxonomic Group in TWB format</a> is meant as an input file to our <a href="/twb.html">Taxonomic Workbench tool</a>. As such, it is formatted for that tool in sections that represent database tables as they would be used in the workbench.</p> <p>You'll notice each line begins with a two letter code (e.g. TU, SY, TA). These codes represent the type of data; for the examples above, TU is Taxonomic Unit data, SY is for synonyms and TA is for Taxon Authors.</p> <p>After this table identifier, the data fields are shown with a vertical pipe character (|) between each field. </p> <p>The definition of these fields can be found in the ITIS Data Models section of the <a href="/standard.html">Standards and Database Documentation page</a>. </p> <p>There can be many types of data contained in this single file. The format of each section is:</p> <p><b>Comment Links</b><br> [CL] || tsn | comment_id | </p> <p><b>Comments</b><br> [CM] | comment_id | commentator | comment_detail | comment_time_stamp |</p> <p><b>Experts</b><br> [EX]expert_id_prefix | expert_id | expert | exp_comment | </p> <p><b>Geographic Division</b> <br> [GD] | geographic_value | tsn |</p> <p><b>Jurisdiction</b> <br> [JR] | jurisdiction_value | origin | tsn |</p> <p><b>NODC IDs</b> <br> [NO]nodc_id | tsn || </p> <p><b>Other Sources</b> <br> [OS] source_id_prefix || source_id | source_type | source | version | acquisition_date | source_comment | </p> <p><b>Publications</b> <br> [PB] publication_id_prefix || publication_id | reference_author | title | publication_name | listed_pub_date | actual_pub_date | publisher | pub_place | isbn | issn | pages | pub_comment | </p> <p><b>Reference Links</b> <br> [RF] ||| tsn | doc_id_prefix | documentation_id | original_desc_ind | initial_itis_desc_ind | change_track_id | vernacular_name | </p> <p><b>Synonym Links</b> <br> [SY] || tsn | tsn_accepted | </p> <p><b>Taxonomic Authors Lookup</b> <br> [TA] | taxon_author_id | taxon_author | kingdom_id | </p> <p><b>Taxonomic Units</b> <br> [TU] | tsn | unit_ind1 | unit_name1 | unit_ind2 | unit_name2 | unit_ind3 | unit_name3 | unit_ind4 | unit_name4 | unnamed_taxon_ind | usage | unacceptability_reason | taxonomic_credibility_rating | taxonomic_completeness_rating | currency_rating | phylo_sort_sequence | initial_time_stamp | parent_tsn || taxon_author_id || hybrid_author_id | kingdom_id | rank_id | uncertain_parent_ind | </p> <p><b>VernacularReferenceLinks</b> <br> [VL] | | vern_id | | | tsn | doc_id_prefix | documentation_id | <p><b>Vernaculars</b> <br> [VR] || tsn | vernacular_name | vern_id | language | approved_ind | </p> </div> <!-- #EndEditable --> </td> <td><img src="/Static/images/spacer.gif" width="1" height="230" border="0" alt="spacer image"></td> </tr> <tr> <td><img src="/Static/images/spacer.gif" width="115" height="50" border="0" alt="spacing image"></td> <td><img src="/Static/images/spacer.gif" width="22" height="1" border="0" alt="spacing image"></td> <td><img src="/Static/images/spacer.gif" width="531" height="1" border="0" alt="spacing image"></td> <td><img src="/Static/images/spacer.gif" width="1" height="1" border="0" alt="spacing image"></td> </tr> </tbody> </table> <div id="footer_div"></div> <script> $( "#footer_div" ).load( "Static/include/footer.html" ); </script> </body> </html>

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