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href="https://www.ddbj.nig.ac.jp/ddbj/index-e.html">ddbj</a> </li> <li><a>CON</a></li> </ul> </nav> <h1 class="title">CON</h1> </header> <main class="md-content"> <p><span class="red"><strong>[Caution] DDBJ currently terminated accepting new submissions.</strong> </span><br /></p> <p>Many genome projects submitting a lot of <a href="/ddbj/htg-e.html">HTG</a> or <a href="/ddbj/wgs-e.html">WGS</a> entries can often provide the information to assemble a series of their entries and reconstruct a genome structure.<br /> An accession number would be assigned for such contig tiling path, and call it “CON entry”, which is classified into CON division.</p> <p>CON entries have CONTIG lines that indicate accession numbers of citation sequences (piece entries) and their tiling order to construct the contig.<br /> The nucleotide sequence of CON entry is not shown on DDBJ flat file.</p> <p>We can NOT directly accept the submission of CON entry.<br /> At you have to submit all piece entries to construct the contig, then a CON entry will be constructed.</p> <p><a href="/ddbj/file-format-e.html#agp">AGP File</a> is required to submit CON entries.</p> <p>You can submit CON data to DDBJ via <a href="/ddbj/mss-e.html">Mass Submission System (MSS)</a>.</p> <h2 id="flat-file">Sample flat file</h2> <pre><code><a id="LocusA" href="/ddbj/flat-file-e#LocusB">LOCUS</a> <a id="LocusNameA" href="/ddbj/flat-file-e#LocusNameB">BA001000</a> <a id="SequenceLengthA" href="/ddbj/flat-file-e#SequenceLengthB">5631 bp</a> <a id="MoleculeTypeA" href="/ddbj/flat-file-e#MoleculeTypeB">DNA</a> <a id="MoleculeTypeA" href="/ddbj/flat-file-e#MoleculeTypeB">linear</a> <a id="DivisionA" href="/ddbj/flat-file-e#DivisionB">CON</a> <a id="ModificationDateA" href="/ddbj/flat-file-e#ModificationDateB">06-DEC-2008</a> <a id="DefinitionA" href="/ddbj/flat-file-e#DefinitionB">DEFINITION</a> Homo sapiens DNA, chromosome 7, scaffold_ASE1. <a id="AccessionA" href="/ddbj/flat-file-e#AccessionB">ACCESSION</a> BA001000 BZZZ01000000 <a id="VersionA" href="/ddbj/flat-file-e#VersionB">VERSION</a> BA001000.1 <a id="DblinkA" href="/ddbj/flat-file-e#DblinkB">DBLINK</a> BioProject:PRJDA12345 <a id="KeywordsA" href="/ddbj/flat-file-e#KeywordsB">KEYWORDS</a> WGS. <a id="SourceA" href="/ddbj/flat-file-e#SourceB">SOURCE</a> Homo sapiens (human) <a id="OrganismA" href="/ddbj/flat-file-e#OrganismB">ORGANISM</a> Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. <a id="Reference1A" href="/ddbj/flat-file-e#Reference1B">REFERENCE 1</a> (bases 1 to 5631) <a id="AuthorsA" href="/ddbj/flat-file-e#AuthorsB">AUTHORS</a> Mishima,H. and Shizuoka,T. <a id="TitleA" href="/ddbj/flat-file-e#TitleB">TITLE</a> Direct Submission <a id="JournalA" href="/ddbj/flat-file-e#JournalB">JOURNAL</a> Submitted (01-APR-2003) to the DDBJ/EMBL/GenBank databases. Contact:Hanako Mishima National Institute of Genetics, DNA Data Bank of Japan; Yata 1111, Mishima, Shizuoka 411-8540, Japan <a id="Reference2A" href="/ddbj/flat-file-e#Reference2B">REFERENCE 2</a> AUTHORS Mishima,H., Shizuoka,T. and Fuji,I. TITLE Human WGS scaffold CON JOURNAL Unpublished (2003) <a id="CommentA" href="/ddbj/flat-file-e#CommentB">COMMENT</a> Whole genome shotgun sequencing project. Please visit our web site URL:http://www.ddbj.nig.ac.jp/ <a id="FeaturesA" href="/ddbj/flat-file-e#FeaturesB">FEATURES</a> Location/Qualifiers <a id="FeaturesSourceA" href="/ddbj/flat-file-e#FeaturesSourceB">source</a> <a href="/ddbj/location-e.html">1..5631</a> /<a href="/ddbj/qualifiers-e.html#db_xref">db_xref</a>="taxon:9606" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Homo sapiens" /<a href="/ddbj/qualifiers-e.html#submitter_seqid">submitter_seqid</a>="scaffold_ASE1" <a href="/ddbj/features.html#assembly_gap">assembly_gap</a> <a href="/ddbj/location-e.html">1346..2845</a> /<a href="/ddbj/qualifiers-e.html#estimated_length">estimated_length</a>=1500 /<a href="/ddbj/qualifiers-e.html#gap_type">gap_type</a>="within scaffold" /<a href="/ddbj/qualifiers-e.html#linkage_evidence">linkage_evidence</a>="paired-ends" <a href="/ddbj/features.html#assembly_gap">assembly_gap</a> <a href="/ddbj/location-e.html">4302..4401</a> /<a href="/ddbj/qualifiers-e.html#estimated_length">estimated_length</a>=unknown /<a href="/ddbj/qualifiers-e.html#gap_type">gap_type</a>="within scaffold" /<a href="/ddbj/qualifiers-e.html#linkage_evidence">linkage_evidence</a>="align trnscpt" <a id="ContigA" href="#ContigB">CONTIG</a> join(BZZZ01123456.1:1..1345,gap(1500),BZZZ01123457.1:1..1456, gap(unk100),complement(BZZZ01123458.1:1..1230)) <a id="EndA" href="/ddbj/flat-file-e#EndB">//</a></code></pre> </main> <aside class="related-pages"> <h2 class="caption">Related pages</h2> <div class="navigation"> <nav> <ul> <li> <a href="/ddbj/genome-e.html">Data Submission from Genome Project</a> </li> <li> <a href="/ddbj/environmental-e.html">Submission of environmental sequences</a> </li> <li> <a href="/ddbj/transcriptome-e.html">Data Submission from Transcriptome Project</a> </li> <li> <a href="/ddbj/tpa-e.html">Third Party Data (TPA)</a> </li> </ul> </nav> </div> </aside> </section> </div> </section> </div> <footer></footer> <div id="back-top"></div> </body> </html>