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PDBsum - Wikipedia

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.infobox .navbar{font-size:100%}@media screen{html.skin-theme-clientpref-night .mw-parser-output .infobox-full-data:not(.notheme)>div:not(.notheme)[style]{background:#1f1f23!important;color:#f8f9fa}}@media screen and (prefers-color-scheme:dark){html.skin-theme-clientpref-os .mw-parser-output .infobox-full-data:not(.notheme) div:not(.notheme){background:#1f1f23!important;color:#f8f9fa}}@media(min-width:640px){body.skin--responsive .mw-parser-output .infobox-table{display:table!important}body.skin--responsive .mw-parser-output .infobox-table>caption{display:table-caption!important}body.skin--responsive .mw-parser-output .infobox-table>tbody{display:table-row-group}body.skin--responsive .mw-parser-output .infobox-table tr{display:table-row!important}body.skin--responsive .mw-parser-output .infobox-table th,body.skin--responsive .mw-parser-output .infobox-table td{padding-left:inherit;padding-right:inherit}}</style><table class="infobox vevent" style="width:"><caption class="infobox-title summary">PDBSum</caption><tbody><tr><td colspan="2" class="infobox-image"><span class="mw-default-size" typeof="mw:File"><a href="/wiki/File:Pdbsum_logo.gif" class="mw-file-description"><img src="//upload.wikimedia.org/wikipedia/en/f/f7/Pdbsum_logo.gif" decoding="async" width="113" height="75" class="mw-file-element" data-file-width="113" data-file-height="75" /></a></span></td></tr><tr><th colspan="2" class="infobox-header" style="background-color: lavender">Content</th></tr><tr><th scope="row" class="infobox-label" style="white-space: nowrap">Description</th><td class="infobox-data">Overview of the structures contained within the <a href="/wiki/Protein_Data_Bank" title="Protein Data Bank">Protein Data Bank</a>.</td></tr><tr><th scope="row" class="infobox-label" style="white-space: nowrap">Data types<br />captured</th><td class="infobox-data"><a href="/wiki/Protein_structures" class="mw-redirect" title="Protein structures">Protein structures</a></td></tr><tr><th scope="row" class="infobox-label" style="white-space: nowrap"><a href="/wiki/Organism" title="Organism">Organisms</a></th><td class="infobox-data">all</td></tr><tr><th colspan="2" class="infobox-header" style="background-color: lavender">Contact</th></tr><tr><th scope="row" class="infobox-label" style="white-space: nowrap"><a href="/wiki/Research_center" class="mw-redirect" title="Research center">Research center</a></th><td class="infobox-data"><a href="/wiki/European_Bioinformatics_Institute" title="European Bioinformatics Institute">European Bioinformatics Institute</a> (EBI)</td></tr><tr><th scope="row" class="infobox-label" style="white-space: nowrap">Authors</th><td class="infobox-data">Roman Laskowski &amp; al. (1997)</td></tr><tr><th scope="row" class="infobox-label" style="white-space: nowrap">Primary citation</th><td class="infobox-data"><style data-mw-deduplicate="TemplateStyles:r1238218222">.mw-parser-output cite.citation{font-style:inherit;word-wrap:break-word}.mw-parser-output .citation q{quotes:"\"""\"""'""'"}.mw-parser-output .citation:target{background-color:rgba(0,127,255,0.133)}.mw-parser-output .id-lock-free.id-lock-free a{background:url("//upload.wikimedia.org/wikipedia/commons/6/65/Lock-green.svg")right 0.1em center/9px no-repeat}.mw-parser-output .id-lock-limited.id-lock-limited a,.mw-parser-output .id-lock-registration.id-lock-registration a{background:url("//upload.wikimedia.org/wikipedia/commons/d/d6/Lock-gray-alt-2.svg")right 0.1em center/9px no-repeat}.mw-parser-output .id-lock-subscription.id-lock-subscription a{background:url("//upload.wikimedia.org/wikipedia/commons/a/aa/Lock-red-alt-2.svg")right 0.1em center/9px no-repeat}.mw-parser-output .cs1-ws-icon a{background:url("//upload.wikimedia.org/wikipedia/commons/4/4c/Wikisource-logo.svg")right 0.1em center/12px no-repeat}body:not(.skin-timeless):not(.skin-minerva) .mw-parser-output .id-lock-free a,body:not(.skin-timeless):not(.skin-minerva) .mw-parser-output .id-lock-limited a,body:not(.skin-timeless):not(.skin-minerva) .mw-parser-output .id-lock-registration a,body:not(.skin-timeless):not(.skin-minerva) .mw-parser-output .id-lock-subscription a,body:not(.skin-timeless):not(.skin-minerva) .mw-parser-output .cs1-ws-icon a{background-size:contain;padding:0 1em 0 0}.mw-parser-output .cs1-code{color:inherit;background:inherit;border:none;padding:inherit}.mw-parser-output .cs1-hidden-error{display:none;color:var(--color-error,#d33)}.mw-parser-output .cs1-visible-error{color:var(--color-error,#d33)}.mw-parser-output .cs1-maint{display:none;color:#085;margin-left:0.3em}.mw-parser-output .cs1-kern-left{padding-left:0.2em}.mw-parser-output .cs1-kern-right{padding-right:0.2em}.mw-parser-output .citation .mw-selflink{font-weight:inherit}@media screen{.mw-parser-output .cs1-format{font-size:95%}html.skin-theme-clientpref-night .mw-parser-output .cs1-maint{color:#18911f}}@media screen and (prefers-color-scheme:dark){html.skin-theme-clientpref-os .mw-parser-output .cs1-maint{color:#18911f}}</style><a href="/wiki/PMID_(identifier)" class="mw-redirect" title="PMID (identifier)">PMID</a>&#160;<a rel="nofollow" class="external text" href="https://pubmed.ncbi.nlm.nih.gov/9433130">9433130</a></td></tr><tr><th colspan="2" class="infobox-header" style="background-color: lavender">Access</th></tr><tr><th scope="row" class="infobox-label" style="white-space: nowrap">Website</th><td class="infobox-data"><span class="url"><a rel="nofollow" class="external text" href="http://www.ebi.ac.uk/pdbsum/">www<wbr />.ebi<wbr />.ac<wbr />.uk<wbr />/pdbsum<wbr />/</a></span></td></tr><tr><th colspan="2" class="infobox-header" style="background-color: lavender">Miscellaneous</th></tr><tr><th scope="row" class="infobox-label" style="white-space: nowrap">Bookmarkable<br />entities</th><td class="infobox-data">yes</td></tr></tbody></table> <p><b>PDBsum</b> is a database that provides an overview of the contents of each 3D <a href="/wiki/Macromolecule" title="Macromolecule">macromolecular</a> structure deposited in the <a href="/wiki/Protein_Data_Bank" title="Protein Data Bank">Protein Data Bank</a> (PDB).<sup id="cite_ref-pmid9433130_1-0" class="reference"><a href="#cite_note-pmid9433130-1"><span class="cite-bracket">&#91;</span>1<span class="cite-bracket">&#93;</span></a></sup><sup id="cite_ref-pmid11125097_2-0" class="reference"><a href="#cite_note-pmid11125097-2"><span class="cite-bracket">&#91;</span>2<span class="cite-bracket">&#93;</span></a></sup><sup id="cite_ref-pmid15608193_3-0" class="reference"><a href="#cite_note-pmid15608193-3"><span class="cite-bracket">&#91;</span>3<span class="cite-bracket">&#93;</span></a></sup><sup id="cite_ref-pmid18996896_4-0" class="reference"><a href="#cite_note-pmid18996896-4"><span class="cite-bracket">&#91;</span>4<span class="cite-bracket">&#93;</span></a></sup> </p> <meta property="mw:PageProp/toc" /> <div class="mw-heading mw-heading2"><h2 id="Database">Database</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=PDBsum&amp;action=edit&amp;section=1" title="Edit section: Database"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <p>The original version of the database was developed around 1995 by Roman Laskowski and collaborators at <a href="/wiki/University_College_London" title="University College London">University College London</a>.<sup id="cite_ref-about-pdbsum_5-0" class="reference"><a href="#cite_note-about-pdbsum-5"><span class="cite-bracket">&#91;</span>5<span class="cite-bracket">&#93;</span></a></sup> As of 2014, PDBsum is maintained by Laskowski and collaborators in the laboratory of <a href="/wiki/Janet_Thornton" title="Janet Thornton">Janet Thornton</a> at the <a href="/wiki/European_Bioinformatics_Institute" title="European Bioinformatics Institute">European Bioinformatics Institute</a> (EBI). </p><p>Each structure in the PDBsum database includes an image of structure (main view, Bottom view and right view), molecular components contained in the complex(structure), enzyme reaction diagram if appropriate, <a href="/wiki/Gene_ontology" class="mw-redirect" title="Gene ontology">Gene ontology</a> functional assignments, a 1D sequence annotated by <a href="/wiki/Pfam" title="Pfam">Pfam</a> and <a href="/wiki/InterPro" title="InterPro">InterPro</a> domain assignments, description of bound molecules and graphic showing interactions between protein and secondary structure, schematic diagrams of <a href="/wiki/Protein%E2%80%93protein_interaction" title="Protein–protein interaction">protein–protein interactions</a>, analysis of clefts contained within the structure and links to external databases.<sup id="cite_ref-pmid24153109_6-0" class="reference"><a href="#cite_note-pmid24153109-6"><span class="cite-bracket">&#91;</span>6<span class="cite-bracket">&#93;</span></a></sup> The <a href="/wiki/RasMol" title="RasMol">RasMol</a> and <a href="/wiki/Jmol" title="Jmol">Jmol</a> molecular graphics software are used to provide a 3D view of molecules and their interactions within PDBsum.<sup id="cite_ref-about-pdbsum_5-1" class="reference"><a href="#cite_note-about-pdbsum-5"><span class="cite-bracket">&#91;</span>5<span class="cite-bracket">&#93;</span></a></sup> </p><p>Since the release of the <a href="/wiki/1000_Genomes_Project" title="1000 Genomes Project">1000 Genomes Project</a> in October 2012, all single amino acid variants identified by the project have been mapped to the corresponding protein sequences in the Protein Data Bank. These variants are also displayed within PDBsum, cross-referenced to the relevant <a href="/wiki/UniProt" title="UniProt">UniProt</a> identifier.<sup id="cite_ref-pmid24153109_6-1" class="reference"><a href="#cite_note-pmid24153109-6"><span class="cite-bracket">&#91;</span>6<span class="cite-bracket">&#93;</span></a></sup> PDBsum contains a number of <a href="/wiki/Protein_structures" class="mw-redirect" title="Protein structures">protein structures</a> that may be of interest in <a href="/wiki/Drug_design#Structure-based" title="Drug design">structure-based drug design</a>. One branch of PDBsum, known as DrugPort, focuses on these models and is linked with the <a href="/wiki/DrugBank" title="DrugBank">DrugBank</a> drug target database.<sup id="cite_ref-pmid24153109_6-2" class="reference"><a href="#cite_note-pmid24153109-6"><span class="cite-bracket">&#91;</span>6<span class="cite-bracket">&#93;</span></a></sup><sup id="cite_ref-drugbank_7-0" class="reference"><a href="#cite_note-drugbank-7"><span class="cite-bracket">&#91;</span>7<span class="cite-bracket">&#93;</span></a></sup> </p> <div class="mw-heading mw-heading2"><h2 id="See_also">See also</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=PDBsum&amp;action=edit&amp;section=2" title="Edit section: See also"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <ul><li><a href="/wiki/Crystallographic_database" title="Crystallographic database">Crystallographic database</a></li> <li><a href="/wiki/Protein_structure_database" title="Protein structure database">Protein structure database</a></li></ul> <div class="mw-heading mw-heading2"><h2 id="References">References</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=PDBsum&amp;action=edit&amp;section=3" title="Edit section: References"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <style data-mw-deduplicate="TemplateStyles:r1239543626">.mw-parser-output .reflist{margin-bottom:0.5em;list-style-type:decimal}@media screen{.mw-parser-output .reflist{font-size:90%}}.mw-parser-output .reflist .references{font-size:100%;margin-bottom:0;list-style-type:inherit}.mw-parser-output .reflist-columns-2{column-width:30em}.mw-parser-output .reflist-columns-3{column-width:25em}.mw-parser-output .reflist-columns{margin-top:0.3em}.mw-parser-output .reflist-columns ol{margin-top:0}.mw-parser-output .reflist-columns li{page-break-inside:avoid;break-inside:avoid-column}.mw-parser-output .reflist-upper-alpha{list-style-type:upper-alpha}.mw-parser-output .reflist-upper-roman{list-style-type:upper-roman}.mw-parser-output .reflist-lower-alpha{list-style-type:lower-alpha}.mw-parser-output .reflist-lower-greek{list-style-type:lower-greek}.mw-parser-output .reflist-lower-roman{list-style-type:lower-roman}</style><div class="reflist"> <div class="mw-references-wrap"><ol class="references"> <li id="cite_note-pmid9433130-1"><span class="mw-cite-backlink"><b><a href="#cite_ref-pmid9433130_1-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1238218222"><cite id="CITEREFLaskowskiHutchinsonMichieWallace1997" class="citation journal cs1">Laskowski RA, Hutchinson EG, Michie AD, Wallace AC, Jones ML, Thornton JM (Dec 1997). "PDBsum: a Web-based database of summaries and analyses of all PDB structures". <i>Trends in Biochemical Sciences</i>. <b>22</b> (12): 488–90. <a href="/wiki/Doi_(identifier)" class="mw-redirect" title="Doi (identifier)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1016%2FS0968-0004%2897%2901140-7">10.1016/S0968-0004(97)01140-7</a>. <a href="/wiki/PMID_(identifier)" class="mw-redirect" title="PMID (identifier)">PMID</a>&#160;<a rel="nofollow" class="external text" href="https://pubmed.ncbi.nlm.nih.gov/9433130">9433130</a>.</cite><span title="ctx_ver=Z39.88-2004&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&amp;rft.genre=article&amp;rft.jtitle=Trends+in+Biochemical+Sciences&amp;rft.atitle=PDBsum%3A+a+Web-based+database+of+summaries+and+analyses+of+all+PDB+structures&amp;rft.volume=22&amp;rft.issue=12&amp;rft.pages=488-90&amp;rft.date=1997-12&amp;rft_id=info%3Adoi%2F10.1016%2FS0968-0004%2897%2901140-7&amp;rft_id=info%3Apmid%2F9433130&amp;rft.aulast=Laskowski&amp;rft.aufirst=RA&amp;rft.au=Hutchinson%2C+EG&amp;rft.au=Michie%2C+AD&amp;rft.au=Wallace%2C+AC&amp;rft.au=Jones%2C+ML&amp;rft.au=Thornton%2C+JM&amp;rfr_id=info%3Asid%2Fen.wikipedia.org%3APDBsum" class="Z3988"></span></span> </li> <li id="cite_note-pmid11125097-2"><span class="mw-cite-backlink"><b><a href="#cite_ref-pmid11125097_2-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1238218222"><cite id="CITEREFLaskowski2001" class="citation journal cs1">Laskowski RA (Jan 2001). <a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC29784">"PDBsum: summaries and analyses of PDB structures"</a>. <i>Nucleic Acids Research</i>. <b>29</b> (1): 221–2. <a href="/wiki/Doi_(identifier)" class="mw-redirect" title="Doi (identifier)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fnar%2F29.1.221">10.1093/nar/29.1.221</a>. <a href="/wiki/PMC_(identifier)" class="mw-redirect" title="PMC (identifier)">PMC</a>&#160;<span class="id-lock-free" title="Freely accessible"><a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC29784">29784</a></span>. <a href="/wiki/PMID_(identifier)" class="mw-redirect" title="PMID (identifier)">PMID</a>&#160;<a rel="nofollow" class="external text" href="https://pubmed.ncbi.nlm.nih.gov/11125097">11125097</a>.</cite><span title="ctx_ver=Z39.88-2004&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&amp;rft.genre=article&amp;rft.jtitle=Nucleic+Acids+Research&amp;rft.atitle=PDBsum%3A+summaries+and+analyses+of+PDB+structures&amp;rft.volume=29&amp;rft.issue=1&amp;rft.pages=221-2&amp;rft.date=2001-01&amp;rft_id=https%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC29784%23id-name%3DPMC&amp;rft_id=info%3Apmid%2F11125097&amp;rft_id=info%3Adoi%2F10.1093%2Fnar%2F29.1.221&amp;rft.aulast=Laskowski&amp;rft.aufirst=RA&amp;rft_id=https%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC29784&amp;rfr_id=info%3Asid%2Fen.wikipedia.org%3APDBsum" class="Z3988"></span></span> </li> <li id="cite_note-pmid15608193-3"><span class="mw-cite-backlink"><b><a href="#cite_ref-pmid15608193_3-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1238218222"><cite id="CITEREFLaskowskiChistyakovThornton2005" class="citation journal cs1">Laskowski RA, Chistyakov VV, Thornton JM (Jan 2005). <a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC539955">"PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids"</a>. <i>Nucleic Acids Research</i>. <b>33</b> (Database issue): D266-8. <a href="/wiki/Doi_(identifier)" class="mw-redirect" title="Doi (identifier)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fnar%2Fgki001">10.1093/nar/gki001</a>. <a href="/wiki/PMC_(identifier)" class="mw-redirect" title="PMC (identifier)">PMC</a>&#160;<span class="id-lock-free" title="Freely accessible"><a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC539955">539955</a></span>. <a href="/wiki/PMID_(identifier)" class="mw-redirect" title="PMID (identifier)">PMID</a>&#160;<a rel="nofollow" class="external text" href="https://pubmed.ncbi.nlm.nih.gov/15608193">15608193</a>.</cite><span title="ctx_ver=Z39.88-2004&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&amp;rft.genre=article&amp;rft.jtitle=Nucleic+Acids+Research&amp;rft.atitle=PDBsum+more%3A+new+summaries+and+analyses+of+the+known+3D+structures+of+proteins+and+nucleic+acids&amp;rft.volume=33&amp;rft.issue=Database+issue&amp;rft.pages=D266-8&amp;rft.date=2005-01&amp;rft_id=https%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC539955%23id-name%3DPMC&amp;rft_id=info%3Apmid%2F15608193&amp;rft_id=info%3Adoi%2F10.1093%2Fnar%2Fgki001&amp;rft.aulast=Laskowski&amp;rft.aufirst=RA&amp;rft.au=Chistyakov%2C+VV&amp;rft.au=Thornton%2C+JM&amp;rft_id=https%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC539955&amp;rfr_id=info%3Asid%2Fen.wikipedia.org%3APDBsum" class="Z3988"></span></span> </li> <li id="cite_note-pmid18996896-4"><span class="mw-cite-backlink"><b><a href="#cite_ref-pmid18996896_4-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1238218222"><cite id="CITEREFLaskowski2009" class="citation journal cs1">Laskowski RA (Jan 2009). <a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686501">"PDBsum new things"</a>. <i>Nucleic Acids Research</i>. <b>37</b> (Database issue): D355-9. <a href="/wiki/Doi_(identifier)" class="mw-redirect" title="Doi (identifier)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fnar%2Fgkn860">10.1093/nar/gkn860</a>. <a href="/wiki/PMC_(identifier)" class="mw-redirect" title="PMC (identifier)">PMC</a>&#160;<span class="id-lock-free" title="Freely accessible"><a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686501">2686501</a></span>. <a href="/wiki/PMID_(identifier)" class="mw-redirect" title="PMID (identifier)">PMID</a>&#160;<a rel="nofollow" class="external text" href="https://pubmed.ncbi.nlm.nih.gov/18996896">18996896</a>.</cite><span title="ctx_ver=Z39.88-2004&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&amp;rft.genre=article&amp;rft.jtitle=Nucleic+Acids+Research&amp;rft.atitle=PDBsum+new+things&amp;rft.volume=37&amp;rft.issue=Database+issue&amp;rft.pages=D355-9&amp;rft.date=2009-01&amp;rft_id=https%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC2686501%23id-name%3DPMC&amp;rft_id=info%3Apmid%2F18996896&amp;rft_id=info%3Adoi%2F10.1093%2Fnar%2Fgkn860&amp;rft.aulast=Laskowski&amp;rft.aufirst=RA&amp;rft_id=https%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC2686501&amp;rfr_id=info%3Asid%2Fen.wikipedia.org%3APDBsum" class="Z3988"></span></span> </li> <li id="cite_note-about-pdbsum-5"><span class="mw-cite-backlink">^ <a href="#cite_ref-about-pdbsum_5-0"><sup><i><b>a</b></i></sup></a> <a href="#cite_ref-about-pdbsum_5-1"><sup><i><b>b</b></i></sup></a></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1238218222"><cite class="citation web cs1"><a rel="nofollow" class="external text" href="https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?pdbcode=n/a&amp;template=doc_about.html">"PDBsum documentation: About PDBsum"</a>. European Molecular Biology Laboratory – The European Bioinformatics Institute<span class="reference-accessdate">. Retrieved <span class="nowrap">9 September</span> 2014</span>.</cite><span title="ctx_ver=Z39.88-2004&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook&amp;rft.genre=unknown&amp;rft.btitle=PDBsum+documentation%3A+About+PDBsum&amp;rft.pub=European+Molecular+Biology+Laboratory+%E2%80%93+The+European+Bioinformatics+Institute&amp;rft_id=https%3A%2F%2Fwww.ebi.ac.uk%2Fthornton-srv%2Fdatabases%2Fcgi-bin%2Fpdbsum%2FGetPage.pl%3Fpdbcode%3Dn%2Fa%26template%3Ddoc_about.html&amp;rfr_id=info%3Asid%2Fen.wikipedia.org%3APDBsum" class="Z3988"></span></span> </li> <li id="cite_note-pmid24153109-6"><span class="mw-cite-backlink">^ <a href="#cite_ref-pmid24153109_6-0"><sup><i><b>a</b></i></sup></a> <a href="#cite_ref-pmid24153109_6-1"><sup><i><b>b</b></i></sup></a> <a href="#cite_ref-pmid24153109_6-2"><sup><i><b>c</b></i></sup></a></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1238218222"><cite id="CITEREFde_BeerBerkaThorntonLaskowski2014" class="citation journal cs1">de Beer TA, Berka K, Thornton JM, Laskowski RA (Jan 2014). <a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965036">"PDBsum additions"</a>. <i>Nucleic Acids Research</i>. <b>42</b> (Database issue): D292-6. <a href="/wiki/Doi_(identifier)" class="mw-redirect" title="Doi (identifier)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fnar%2Fgkt940">10.1093/nar/gkt940</a>. <a href="/wiki/PMC_(identifier)" class="mw-redirect" title="PMC (identifier)">PMC</a>&#160;<span class="id-lock-free" title="Freely accessible"><a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965036">3965036</a></span>. <a href="/wiki/PMID_(identifier)" class="mw-redirect" title="PMID (identifier)">PMID</a>&#160;<a rel="nofollow" class="external text" href="https://pubmed.ncbi.nlm.nih.gov/24153109">24153109</a>.</cite><span title="ctx_ver=Z39.88-2004&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&amp;rft.genre=article&amp;rft.jtitle=Nucleic+Acids+Research&amp;rft.atitle=PDBsum+additions&amp;rft.volume=42&amp;rft.issue=Database+issue&amp;rft.pages=D292-6&amp;rft.date=2014-01&amp;rft_id=https%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC3965036%23id-name%3DPMC&amp;rft_id=info%3Apmid%2F24153109&amp;rft_id=info%3Adoi%2F10.1093%2Fnar%2Fgkt940&amp;rft.aulast=de+Beer&amp;rft.aufirst=TA&amp;rft.au=Berka%2C+K&amp;rft.au=Thornton%2C+JM&amp;rft.au=Laskowski%2C+RA&amp;rft_id=https%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC3965036&amp;rfr_id=info%3Asid%2Fen.wikipedia.org%3APDBsum" class="Z3988"></span></span> </li> <li id="cite_note-drugbank-7"><span class="mw-cite-backlink"><b><a href="#cite_ref-drugbank_7-0">^</a></b></span> <span class="reference-text"><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1238218222"><cite id="CITEREFKnoxLawJewisonLiu2011" class="citation journal cs1">Knox C, Law V, Jewison T, Liu P, Ly S, Frolkis A, Pon A, Banco K, Mak C, Neveu V, Djoumbou Y, Eisner R, Guo AC, <a href="/wiki/David_S._Wishart" title="David S. Wishart">Wishart DS</a> (Jan 2011). <a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013709">"DrugBank 3.0: a comprehensive resource for 'omics' research on drugs"</a>. <i>Nucleic Acids Research</i>. <b>39</b> (Database issue): D1035-41. <a href="/wiki/Doi_(identifier)" class="mw-redirect" title="Doi (identifier)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fnar%2Fgkq1126">10.1093/nar/gkq1126</a>. <a href="/wiki/PMC_(identifier)" class="mw-redirect" title="PMC (identifier)">PMC</a>&#160;<span class="id-lock-free" title="Freely accessible"><a rel="nofollow" class="external text" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013709">3013709</a></span>. <a href="/wiki/PMID_(identifier)" class="mw-redirect" title="PMID (identifier)">PMID</a>&#160;<a rel="nofollow" class="external text" href="https://pubmed.ncbi.nlm.nih.gov/21059682">21059682</a>.</cite><span title="ctx_ver=Z39.88-2004&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&amp;rft.genre=article&amp;rft.jtitle=Nucleic+Acids+Research&amp;rft.atitle=DrugBank+3.0%3A+a+comprehensive+resource+for+%27omics%27+research+on+drugs&amp;rft.volume=39&amp;rft.issue=Database+issue&amp;rft.pages=D1035-41&amp;rft.date=2011-01&amp;rft_id=https%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC3013709%23id-name%3DPMC&amp;rft_id=info%3Apmid%2F21059682&amp;rft_id=info%3Adoi%2F10.1093%2Fnar%2Fgkq1126&amp;rft.aulast=Knox&amp;rft.aufirst=C&amp;rft.au=Law%2C+V&amp;rft.au=Jewison%2C+T&amp;rft.au=Liu%2C+P&amp;rft.au=Ly%2C+S&amp;rft.au=Frolkis%2C+A&amp;rft.au=Pon%2C+A&amp;rft.au=Banco%2C+K&amp;rft.au=Mak%2C+C&amp;rft.au=Neveu%2C+V&amp;rft.au=Djoumbou%2C+Y&amp;rft.au=Eisner%2C+R&amp;rft.au=Guo%2C+AC&amp;rft.au=Wishart%2C+DS&amp;rft_id=https%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC3013709&amp;rfr_id=info%3Asid%2Fen.wikipedia.org%3APDBsum" class="Z3988"></span></span> </li> </ol></div></div> <div class="mw-heading mw-heading2"><h2 id="External_links">External links</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=PDBsum&amp;action=edit&amp;section=4" title="Edit section: External links"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <ul><li><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r1238218222"><cite id="CITEREFLaskowski_RA,_Thornton_JM" class="citation web cs1">Laskowski RA, Thornton JM. <a rel="nofollow" class="external text" href="http://www.ebi.ac.uk/pdbsum/">"PDBsum home page"</a>. European Bioinformatics Institute.</cite><span title="ctx_ver=Z39.88-2004&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook&amp;rft.genre=unknown&amp;rft.btitle=PDBsum+home+page&amp;rft.pub=European+Bioinformatics+Institute&amp;rft.au=Laskowski+RA%2C+Thornton+JM&amp;rft_id=http%3A%2F%2Fwww.ebi.ac.uk%2Fpdbsum%2F&amp;rfr_id=info%3Asid%2Fen.wikipedia.org%3APDBsum" class="Z3988"></span></li></ul> <!-- NewPP limit report Parsed by mw‐api‐ext.eqiad.main‐6696b4cc84‐4q7dj Cached time: 20241122183355 Cache expiry: 2592000 Reduced expiry: false Complications: [vary‐revision‐sha1, show‐toc] CPU time usage: 0.241 seconds Real time usage: 0.312 seconds Preprocessor visited node count: 1097/1000000 Post‐expand include size: 27897/2097152 bytes Template argument size: 1686/2097152 bytes Highest expansion depth: 23/100 Expensive parser function count: 1/500 Unstrip recursion depth: 1/20 Unstrip post‐expand size: 35473/5000000 bytes Lua time usage: 0.144/10.000 seconds Lua memory usage: 4771357/52428800 bytes Number of Wikibase entities loaded: 0/400 --> <!-- Transclusion expansion time report (%,ms,calls,template) 100.00% 284.531 1 -total 39.66% 112.842 1 Template:Reflist 31.75% 90.326 1 Template:Infobox_biodatabase 30.75% 87.506 6 Template:Cite_journal 30.27% 86.130 1 Template:Infobox 24.88% 70.798 1 Template:Short_description 16.40% 46.657 2 Template:If_empty 14.59% 41.525 1 Template:Ifnumber 14.57% 41.447 2 Template:Pagetype 13.91% 39.566 1 Template:PMID --> <!-- Saved in parser cache with key enwiki:pcache:idhash:31070840-0!canonical and timestamp 20241122183355 and revision id 1240687017. 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