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RRID | Searching in Community Resources
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Many functions will not work if you continue with JavaScript disabled. </div> </noscript> <div id="loading" class="page-overlay"> <div class="center-style-1"> <div class="center-style-2"> <div class="center-style-3"> <center> <h2>Searching across hundreds of databases <i class="fa fa-cog fa-spin"></i></h2> <img src="/images/scicrunch.png" style="height: 100px" /> </center> </div> </div> </div> </div> <div id="restarting-warning" class="page-overlay"> <div class="center-style-1"> <div class="center-style-2"> <div class="center-style-3"> <center> <h2>Our searching services are busy right now. Your search will reload in five seconds.</h2> </center> </div> </div> </div> </div> <div id="try-again-later-warning" class="alert alert-warning" role="alert"> Our searching services are busy right now. 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</script> <li><a href="#" class="btn-login">Login</a></li> <li><a class="referer-link" href="/resources/join">Register</a></li> <!-- <li><i class="search2 fa fa-info-circle tutorial-header-btn" style="cursor:pointer"></i></li> --> </ul> </div> </div> </div> </div> </div> <div class="header "> <!-- Topbar --> <div class="topbar"> <div class="container"> <!-- Topbar Navigation --> <!-- End Topbar Navigation --> </div> </div> <!-- End Topbar --> <!-- Navbar --> <div class="navbar navbar-default" role="navigation" style="margin-bottom: 20px;"> <div class="container"> <!-- Brand and toggle get grouped for better mobile display --> <div class="navbar-header"> <a class="navbar-brand" href="/resources"> <img class="community-logo" src="/upload/community-logo/rin-resources_69984.png"/> <span class="community-name">RRID Portal</span> </a> </div> <!-- Collect the nav links, forms, and other content for toggling --> <div> <ul class="nav navbar-nav"> <!-- Home --> <li class="active dropdown"> <a href="javascript:void(0)" class="dropdown-toggle joyride-about" data-toggle="dropdown">About</a> <ul class="dropdown-menu"> <li><a href="/resources/about/Getting Started" target="_blank">Getting Started</a></li><li><a href="/resources/about/tips" target="_blank">Search Features and Tips</a></li><li><a href="/resources/about/community_authorities" target="_blank">Community Standard Authorities</a></li><li><a href="/resources/about/faqs" target="_blank">FAQs and Tutorials</a></li><li><a href="/resources/about/scibot" target="_blank">SciBot</a></li><li><a href="/resources/about/guidelines" target="_blank">Resource Citation Guidelines</a></li> <li ><a href="/resources/about/resource">Add a Resource</a></li> </ul> </li> <!-- End Home --> <!-- Job Pages --> <!-- End Job Pages --> </ul> </div> <!--/navbar-collapse--> </div> </div> <!-- End Navbar --> </div> <!--=== End Header ===--> <div class="container login-backing" style="display:none;position: fixed;left:0;top:0;width:100%;height:100%;z-index: 20000;background: rgba(0,0,0,.8)"> <!--Reg Block--> <form method="post" action="/forms/login.php?cid=510"> <div class="reg-block login-box"> <div class="login-backing close dark">X</div> <div class="reg-block-header"> <h2>Log in</h2> </div> <div class="input-group margin-bottom-20"> <span class="input-group-addon"><i class="fa fa-envelope"></i></span> <input type="text" class="form-control" name="email" placeholder="Email"> </div> <div class="input-group margin-bottom-20"> <span class="input-group-addon"><i class="fa fa-lock"></i></span> <input type="password" class="form-control" name="password" placeholder="Password"> </div> <a class="referer-link" href="/resources/join">Create an account</a><br/> <span class="simple-toggle login-backing" modal=".forgot-password" style="cursor:pointer;color:#72c02c" title="Forgot Password">Forgot password?</span><br/> <hr> <div class="row"> <div class="col-md-10 col-md-offset-1"> <button type="submit" class="btn-u btn-block">Log In</button> </div> </div> </div> </form> <!--End Reg Block--> </div><!--/container--> <div class="back-hide forgot-password no-padding"> <div class="close dark less-right">X</div> <div id="sky-form4" class="sky-form" novalidate="novalidate"> <header>Forgot Password</header> <fieldset> <p> If you have forgotten your password you can enter your email here and get a temporary password sent to your email. <div class="forgot-pw-container"> <form class="forgot-pw-form"> <div class="input-group"> <input type="text" class="form-control forgot-email" name="query" placeholder="Account Email"/> <span class="input-group-btn"> <button class="btn-u" type="submit">Send</button> </span> </div> </form> </div> </p> </fieldset> </div> </div> <div class="large-modal back-hide leave-comm"> <div class="close dark less-right">X</div> <h2>Leaving Community</h2> <p style="margin:20px 0"> Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community. </p> <div class="btn-u btn-u-default close-btn">No</div> <a class="btn-u btn-u-red" href="/forms/leave.php?cid=510">Yes</a> </div> <ol id="joyRideHeaderContent" style="display:none"> <li data-class="joyride-about" data-text="Next" data-options="tipLocation:bottom;tipAnimation:fade"> <h2>About</h2> <p> Find out information about this community and visit other pages within it. You can also add a resource to the community here. </p> </li> <li data-class="joyride-community-resources" data-text="Next" data-options="tipLocation:bottom;tipAnimation:fade"> <h2>Community Resources</h2> <p> Search through data specific to this community </p> </li> <li data-class="joyride-more-resources" data-text="Next" data-options="tipLocation:bottom;tipAnimation:fade"> <h2>More Resources</h2> <p> Search through all of SciCrunch's data. </p> </li> <li data-class="joyride-literature" data-text="Next" data-options="tipLocation:bottom;tipAnimation:fade"> <h2>Literature</h2> <p> Search through literature data. </p> </li> </ol> <script type="text/javascript"> $(function() { $(".tutorial-header-btn").click(function () { $("body").joyride(); $("body").joyride("destroy"); // joyride bug, when multiple joyrides on a page $(".joyride-next-tip").show(); $("#joyRideHeaderContent").joyride( { "postStepCallback": function(index, tip) { }, "startOffset": 0, "tip_class": false, } ); }); }); </script> <div class="container login-backing" style="display:none;position: fixed;left:0;top:0;width:100%;height:100%;z-index: 20000;background: rgba(0,0,0,.8)"> <!--Reg Block--> <form method="post" action="/forms/login.php?cid=510"> <div class="reg-block login-box"> <div class="login-backing close dark">X</div> <div class="reg-block-header"> <h2>Log in</h2> </div> <div class="input-group margin-bottom-20"> <span class="input-group-addon"><i class="fa fa-envelope"></i></span> <input type="text" class="form-control" name="email" placeholder="Email"> </div> <div class="input-group margin-bottom-20"> <span class="input-group-addon"><i class="fa fa-lock"></i></span> <input type="password" class="form-control" name="password" placeholder="Password"> </div> <a class="referer-link" href="/resources/join">Create an account</a><br/> <span class="simple-toggle login-backing" modal=".forgot-password" style="cursor:pointer;color:#72c02c" title="Forgot Password">Forgot password?</span><br/> <hr> <div class="row"> <div class="col-md-10 col-md-offset-1"> <button type="submit" class="btn-u btn-block">Log In</button> </div> </div> </div> </form> <!--End Reg Block--> </div><!--/container--> <div class="back-hide forgot-password no-padding"> <div class="close dark less-right">X</div> <div id="sky-form4" class="sky-form" novalidate="novalidate"> <header>Forgot Password</header> <fieldset> <p> If you have forgotten your password you can enter your email here and get a temporary password sent to your email. <div class="forgot-pw-container"> <form class="forgot-pw-form"> <div class="input-group"> <input type="text" class="form-control forgot-email" name="query" placeholder="Account Email"/> <span class="input-group-btn"> <button class="btn-u" type="submit">Send</button> </span> </div> </form> </div> </p> </fieldset> </div> </div> <script type="text/javascript" src="/js/facets-wordcloud30.js"></script> <script> document.categoryGraphData = null; </script> <link href="/css/rin.css" rel="stylesheet" /> <div class="rin"> <div class="report"> <div class="header-scicrunch"> <div class="container"> <div class="row"> <div> <h1 style="margin-top:10px"> Tools <a target='_self' href='https://rrid.site/rin/rrids' class='btn btn-primary'><i class='fa fa-bars'></i> Select Another Resource Report Type</a> </h1> <ol class="breadcrumb"> <li> <a class="color-white " target="_self" href="https://rrid.site" > Home </a> </li> <li> <a class="color-white " target="_self" href="https://rrid.site/rin/rrids" > Resource Reports </a> </li> <li> <a class="color-white active" target="_self" > Tools </a> </li> </ol> </div> </div> </div> </div> <div class="header-background-resolver"></div> <div class="row"> <div class="container"> <div class="wrapper"> <div class="row"> <div class="col-md-12"> <div> <div class="row"> <div class="col-md-12"> <p style="margin-bottom: 0px" class="truncate-medium" id="sc-descr"><a href="https://scicrunch.org/scicrunch/about/sources/nlx_144509-1">SciCrunch Registry</a> is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to <a href="https://scicrunch.org/create/resource">register your resource</a>.</p> </div> <div class="col-md-12 results-number" style="margin-top:10px;"> <style> .search-block-v2 h2 { color: #585f69; 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(36) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="data%20processing%20software" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Adata%20analysis%20software" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="31" title="data analysis software"> data analysis softwa... (31) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="data%20analysis%20software" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Aservice%20resource" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="25" title="service resource"> service resource (25) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="service%20resource" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Aaccess%20service%20resource" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="15" title="access service resource"> access service resou... (15) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="access%20service%20resource" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Acore%20facility" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="15" title="core facility"> core facility (15) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="core%20facility" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Asequence%20analysis%20software" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="11" title="sequence analysis software"> sequence analysis so... (11) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="sequence%20analysis%20software" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Adata%20or%20information%20resource" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="10" title="data or information resource"> data or information ... (10) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="data%20or%20information%20resource" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Asoftware%20toolkit" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="10" title="software toolkit"> software toolkit (10) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="software%20toolkit" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Aanalysis%20service%20resource" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="9" title="analysis service resource"> analysis service res... (9) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="analysis%20service%20resource" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Aproduction%20service%20resource" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="9" title="production service resource"> production service r... (9) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="production%20service%20resource" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Adata%20analysis%20service" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="6" title="data analysis service"> data analysis servic... (6) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="data%20analysis%20service" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Aimage%20analysis%20software" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="6" title="image analysis software"> image analysis softw... (6) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="image%20analysis%20software" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Adata%20access%20protocol" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="5" title="data access protocol"> data access protocol (5) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="data%20access%20protocol" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Adatabase" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="5" title="database"> database (5) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="database" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Aportal" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="5" title="portal"> portal (5) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="portal" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Aweb%20service" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="5" title="web service"> web service (5) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="web%20service" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Aalignment%20software" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="4" title="alignment software"> alignment software (4) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="alignment%20software" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Resource%20Type%3Adisease-related%20portal" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="3" title="disease-related portal"> disease-related port... (3) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Resource%20Type" facet="disease-related%20portal" /> </div> </div> </li> </ul> </li> <li class="list-group-item list-toggle" data-toggle="collapse" data-parent="#sidebar-nav" href="#collapse-Keywords"> <a href="javascript:void(0)">Keywords</a> <ul id="collapse-Keywords" class="collapse"> <li style="border-top: 1px solid #ddd"> <a> analysis (72) </a> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Keywords%3Adata" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="31" title="data"> data (31) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Keywords" facet="data" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a href="https://rrid.site/data/source/nlx_144509-1/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&facet[]=Keywords%3Abio.tools" style="width:90%;padding-right:30px;display:inline-block;border:0" data-count="22" title="bio.tools"> bio.tools (22) </a> <div class="pull-right"> <div class="checkbox"> <input type="checkbox" class="facet-checkbox" style="margin-top: 9px" column="Keywords" facet="bio.tools" /> </div> </div> </li> <li style="border-top: 1px solid #ddd"> <a 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Bowtie is short read aligner.</p> <p></p> <p> <strong>Proper citation:</strong> Bowtie (RRID:SCR_005476) <a href="javascript:void(0)" onclick="copyTextToClipboard('Bowtie (RRID:SCR_005476)', 'rrid:scr_005476')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_005476" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_010881/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_010881">HOMER <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_010881 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1000+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_010881&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 4400 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://homer.ucsd.edu/">http://homer.ucsd.edu/ <i class='fa fa-external-link'></i></a></p> <p>Software tools for Motif Discovery and next-gen sequencing analysis. Used for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets. Collection of command line programs for unix style operating systems written in Perl and C++.</p> <p></p> <p> <strong>Proper citation:</strong> HOMER (RRID:SCR_010881) <a href="javascript:void(0)" onclick="copyTextToClipboard('HOMER (RRID:SCR_010881)', 'rrid:scr_010881')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_010881" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_016294/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_016294">star-for-criu <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_016294 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_016294&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 1 time. --> </ul> </div> <!-- --> <p><a target="_blank" href="https://hub.docker.com/r/biodepot/star-for-criu/">https://hub.docker.com/r/biodepot/star-for-criu/ <i class='fa fa-external-link'></i></a></p> <p>Software as an Hot Start software container for STAR alignment using CRIU (Checkpoint Restore in Userspace) tool to freeze the running container. Can be deployed to align RNA sequencing data. Used in the processing of biomedical big data for better reproducibility and reliability.</p> <p></p> <p> <strong>Proper citation:</strong> star-for-criu (RRID:SCR_016294) <a href="javascript:void(0)" onclick="copyTextToClipboard('star-for-criu (RRID:SCR_016294)', 'rrid:scr_016294')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_016294" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_016559/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_016559">Sleep Heart Health Study <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_016559 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 50+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_016559&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 60 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://sleepdata.org/datasets/shhs">https://sleepdata.org/datasets/shhs <i class='fa fa-external-link'></i></a></p> <p>Portal for a multi-cohort study focused on sleep-disordered breathing and cardiovascular outcomes implemented by the National Heart Lung and Blood Institute. Recorded signals are: EEG, ECG, EOG, SaO2, HR, EOG, EMG, respiratory inductance plethysmography, respiration (thermistor), position, light.</p> <p></p> <p> <strong>Proper citation:</strong> Sleep Heart Health Study (RRID:SCR_016559) <a href="javascript:void(0)" onclick="copyTextToClipboard('Sleep Heart Health Study (RRID:SCR_016559)', 'rrid:scr_016559')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_016559" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_016563/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_016563">SINCERA Pipeline <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_016563 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_016563&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 4 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://github.com/xu-lab/SINCERA">https://github.com/xu-lab/SINCERA <i class='fa fa-external-link'></i></a></p> <p>Software tool implemented in R S4 as an analytic pipeline for processing single-cell RNA-seq data from a whole organ or sorted cells. Used for Single Cell RNA-Seq profiling analysis.</p> <p></p> <p> <strong>Proper citation:</strong> SINCERA Pipeline (RRID:SCR_016563) <a href="javascript:void(0)" onclick="copyTextToClipboard('SINCERA Pipeline (RRID:SCR_016563)', 'rrid:scr_016563')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_016563" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_016583/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_016583">Best Apnea Interventions for Research (BestAIR) sleep study <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_016583 </h4> </ul> </div> <!-- --> <p><a target="_blank" href="https://sleepdata.org/datasets/bestair/">https://sleepdata.org/datasets/bestair/ <i class='fa fa-external-link'></i></a></p> <p>Portal for sleep study to address challenges in conducting future large-scale trials of sleep apnea treatment. Includes data from sleep apnea patients with cardiovascular disease or risk factors. Signals included in the polysomnography (PSG) montage are ECG, SpO2, airflow, nasal pressure, position, pulse, respiratory effort, snore, tidal volume.</p> <p></p> <p> <strong>Proper citation:</strong> Best Apnea Interventions for Research (BestAIR) sleep study (RRID:SCR_016583) <a href="javascript:void(0)" onclick="copyTextToClipboard('Best Apnea Interventions for Research (BestAIR) sleep study (RRID:SCR_016583)', 'rrid:scr_016583')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_016583" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_016679/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_016679">Pavian <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_016679 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 10+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_016679&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 16 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://github.com/fbreitwieser/pavian">https://github.com/fbreitwieser/pavian <i class='fa fa-external-link'></i></a></p> <p>Software R package for interactive analysis of metagenomics classification results with a special focus on infectious disease diagnosis. Used for analyzing and visualization of metagenomics classification results from classifiers such as Kraken, Centrifuge and MetaPhlAn. Provides an alignment viewer for validation of matches to a particular genome.</p> <p></p> <p> <strong>Proper citation:</strong> Pavian (RRID:SCR_016679) <a href="javascript:void(0)" onclick="copyTextToClipboard('Pavian (RRID:SCR_016679)', 'rrid:scr_016679')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_016679" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_016652/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_016652">fermi <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_016652 </h4> </ul> </div> <!-- --> <p><a target="_blank" href="https://github.com/lh3/fermi">https://github.com/lh3/fermi <i class='fa fa-external-link'></i></a></p> <p>Software assembler and analysis tool for whole-genome short-gun sequencing for Illumina reads. Provides tools for error correction, sequence-to-read alignment and comparison between read sets. Used for large genomes.</p> <p></p> <p> <strong>Proper citation:</strong> fermi (RRID:SCR_016652) <a href="javascript:void(0)" onclick="copyTextToClipboard('fermi (RRID:SCR_016652)', 'rrid:scr_016652')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_016652" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_016665/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_016665">Centrifuge Classifier <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_016665 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_016665&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 7 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://www.ccb.jhu.edu/software/centrifuge/">http://www.ccb.jhu.edu/software/centrifuge/ <i class='fa fa-external-link'></i></a></p> <p>Software for rapid and sensitive classification of metagenomic sequences. Used for the classification of DNA sequences from microbial samples and analysis of large metagenomics data sets on conventional desktop computers.</p> <p></p> <p> <strong>Proper citation:</strong> Centrifuge Classifier (RRID:SCR_016665) <a href="javascript:void(0)" onclick="copyTextToClipboard('Centrifuge Classifier (RRID:SCR_016665)', 'rrid:scr_016665')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_016665" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_016964/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_016964">TopDom <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_016964 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_016964&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 9 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://zhoulab.usc.edu/TopDom/">http://zhoulab.usc.edu/TopDom/ <i class='fa fa-external-link'></i></a></p> <p>Software tool to identify Topological Domains, which are basic builiding blocks of genome structure. Detects topological domains in a linear time.</p> <p></p> <p> <strong>Proper citation:</strong> TopDom (RRID:SCR_016964) <a href="javascript:void(0)" onclick="copyTextToClipboard('TopDom (RRID:SCR_016964)', 'rrid:scr_016964')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_016964" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_016919/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_016919">Phenograph <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_016919 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 100+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_016919&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 153 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://github.com/dpeerlab/phenograph">https://github.com/dpeerlab/phenograph <i class='fa fa-external-link'></i></a></p> <p>Software tool as clustering method designed for high dimensional single cell data. Algorithmically defines phenotypes in high dimensional single cell data. Used for large scale analysis of single cell heterogeneity.</p> <p></p> <p> <strong>Proper citation:</strong> Phenograph (RRID:SCR_016919) <a href="javascript:void(0)" onclick="copyTextToClipboard('Phenograph (RRID:SCR_016919)', 'rrid:scr_016919')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_016919" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_017125/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_017125">ImmuneDB <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_017125 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_017125&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 7 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://immunedb.readthedocs.io/en/latest/">https://immunedb.readthedocs.io/en/latest/ <i class='fa fa-external-link'></i></a></p> <p>Software system for storing and analyzing high throughput B and T cell immune receptor sequencing data. Comprised of web interface and of Python analysis tools to process raw reads for gene usage, infer clones, aggregate data, and run downstream analyses, or in conjunction with other AIRR tools using its import and export features.</p> <p></p> <p> <strong>Proper citation:</strong> ImmuneDB (RRID:SCR_017125) <a href="javascript:void(0)" onclick="copyTextToClipboard('ImmuneDB (RRID:SCR_017125)', 'rrid:scr_017125')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_017125" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_013035/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_013035">TopHat <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_013035 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 5000+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_013035&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 9165 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://ccb.jhu.edu/software/tophat/index.shtml">http://ccb.jhu.edu/software/tophat/index.shtml <i class='fa fa-external-link'></i></a></p> <p>Software tool for fast and high throughput alignment of shotgun cDNA sequencing reads generated by transcriptomics technologies. Fast splice junction mapper for RNA-Seq reads. Aligns RNA-Seq reads to mammalian-sized genomes using ultra high-throughput short read aligner Bowtie, and then analyzes mapping results to identify splice junctions between exons.TopHat2 is accurate alignment of transcriptomes in presence of insertions, deletions and gene fusions.</p> <p></p> <p> <strong>Proper citation:</strong> TopHat (RRID:SCR_013035) <a href="javascript:void(0)" onclick="copyTextToClipboard('TopHat (RRID:SCR_013035)', 'rrid:scr_013035')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_013035" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_018141/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_018141">ChromHMM <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_018141 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 10+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_018141&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 41 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://compbio.mit.edu/ChromHMM/">http://compbio.mit.edu/ChromHMM/ <i class='fa fa-external-link'></i></a></p> <p>Software tool for chromatin state discovery and characterization. Used for chromatin state discovery and genome annotation of non coding genome using epigenomic information across one or multiple cell types. Combines multiple genome wide epigenomic maps, and uses combinatorial and spatial mark patterns to infer complete annotation for each cell type. Provides automated enrichment analysis of resulting annotations.</p> <p></p> <p> <strong>Proper citation:</strong> ChromHMM (RRID:SCR_018141) <a href="javascript:void(0)" onclick="copyTextToClipboard('ChromHMM (RRID:SCR_018141)', 'rrid:scr_018141')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_018141" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_018693/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_018693">piNET <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_018693 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_018693&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 4 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://pinet-server.org">http://pinet-server.org <i class='fa fa-external-link'></i></a></p> <p>Web platform for downstream analysis and visualization of proteomics data. Server that facilitates integrated annotation, analysis and visualization of quantitative proteomics data, with emphasis on PTM networks and integration with LINCS library of chemical and genetic perturbation signatures in order to provide further mechanistic and functional insights. Primary input for server consists of set of peptides or proteins, optionally with PTM sites, and their corresponding abundance values.</p> <p></p> <p> <strong>Proper citation:</strong> piNET (RRID:SCR_018693) <a href="javascript:void(0)" onclick="copyTextToClipboard('piNET (RRID:SCR_018693)', 'rrid:scr_018693')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_018693" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_018737/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_018737">TIMER <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_018737 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1000+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_018737&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 1663 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://cistrome.shinyapps.io/timer/">https://cistrome.shinyapps.io/timer/ <i class='fa fa-external-link'></i></a></p> <p>Web server for comprehensive analysis of tumor infiltrating immune cells. Web tool for systematical analysis of immune infiltrates across diverse cancer types. Allows users to input function specific parameters, with resulting figures dynamically displayed to access tumor immunological, clinical, and genomic features.</p> <p></p> <p> <strong>Proper citation:</strong> TIMER (RRID:SCR_018737) <a href="javascript:void(0)" onclick="copyTextToClipboard('TIMER (RRID:SCR_018737)', 'rrid:scr_018737')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_018737" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_018665/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_018665">QoRTs <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_018665 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 10+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_018665&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 23 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://hartleys.github.io/QoRTs/">https://hartleys.github.io/QoRTs/ <i class='fa fa-external-link'></i></a></p> <p>Software package for quality control and data processing of RNA-Seq experiments. Software portable multifunction toolkit for assisting in analysis, quality control, and data management of RNA-Seq and DNA-Seq datasets. Used for detection and identification of errors, biases, and artifacts produced by high throughput sequencing technology. Can be used in operating system that supports Java and R.</p> <p></p> <p> <strong>Proper citation:</strong> QoRTs (RRID:SCR_018665) <a href="javascript:void(0)" onclick="copyTextToClipboard('QoRTs (RRID:SCR_018665)', 'rrid:scr_018665')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_018665" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_018977/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_018977">GOnet <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_018977 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 1+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_018977&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 3 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://tools.dice-database.org/GOnet/)">http://tools.dice-database.org/GOnet/) <i class='fa fa-external-link'></i></a></p> <p>Web tool for interactive Gene Ontology analysis of any biological data sources resulting in gene or protein lists.</p> <p></p> <p> <strong>Proper citation:</strong> GOnet (RRID:SCR_018977) <a href="javascript:void(0)" onclick="copyTextToClipboard('GOnet (RRID:SCR_018977)', 'rrid:scr_018977')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_018977" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_003293/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_003293">SEER Datasets and Software <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_003293 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 10+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_003293&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 22 times --> </ul> </div> <!-- --> <p><a target="_blank" href="http://seer.cancer.gov/resources/">http://seer.cancer.gov/resources/ <i class='fa fa-external-link'></i></a></p> <p>Portal provides SEER research data and software SEER*Stat and SEER*Prep. SEER incidence and population data associated by age, sex, race, year of diagnosis, and geographic areas can be used to examine stage at diagnosis by race/ethnicity, calculate survival by stage at diagnosis, age at diagnosis, and tumor grade or size, determine trends and incidence rates for various cancer sites over time. SEER releases new research data every Spring based on the previous November鈥檚 submission of data.</p> <p></p> <p> <strong>Proper citation:</strong> SEER Datasets and Software (RRID:SCR_003293) <a href="javascript:void(0)" onclick="copyTextToClipboard('SEER Datasets and Software (RRID:SCR_003293)', 'rrid:scr_003293')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_003293" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="inner-results"> <div class="the-title"> <ul class="list-inline up-ul" style="margin:7px 0"> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> <i title="Log In to Use Collections" class="icon-sm fa fa-square-o btn-login" style="cursor:pointer"></i> </span> </li> <h3 style="display:inline-block; text-transform:none"> <div><a href="https://rrid.site/data/record/nlx_144509-1/SCR_016752/resolver?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20&i=rrid:scr_016752">tximport <i class="fa fa-file-o"></i></a></div> </h3> <li class="body-hide"> <style> .in-collection { color: green; } </style> <span class="coll-li"> </span> </li> <h4> RRID:SCR_016752 </h4> <span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> This resource has 50+ mentions. <a target="_self" href="/php/download-rin-rrid-mentions.php?viewid=nlx_144509-1&rrid=RRID:SCR_016752&tab=mentions&mode=all"><i class="fa fa-download" title="Download Mentions"></i></a> <span class="help-tooltip" data-name="mention-definition.html"></span> <!-- This resource was mentioned 65 times --> </ul> </div> <!-- --> <p><a target="_blank" href="https://github.com/mikelove/tximport">https://github.com/mikelove/tximport <i class='fa fa-external-link'></i></a></p> <p>Software R package for importing pseudoaligned reads into R for use with downstream differential expression analysis. Used for import and summarize transcript level estimates for transcript and gene level analysis.</p> <p></p> <p> <strong>Proper citation:</strong> tximport (RRID:SCR_016752) <a href="javascript:void(0)" onclick="copyTextToClipboard('tximport (RRID:SCR_016752)', 'rrid:scr_016752')"> <i class="fa fa-clipboard"></i> Copy </a> <span id="rrid:scr_016752" class="copy-alert" style="text-align: center; width:120px; display:none"></span> </p> <ul class="list-inline up-ul"> <li> <i class="fa fa-info"></i> Source: <a href='https://rrid.site/rin/sources/SCR_005400' target='_blank'>SciCrunch Registry</a> </li> </ul> </div> <hr/> <div class="margin-bottom-30"></div> <div class="text-left"> <div class="text-left"><ul class="pagination"><li><a href="javascript:void(0)">芦</a></li><li class="active"><a class="not-rin" href="javascript:void(0)">1</a></li><li><a class="not-rin" href="https://rrid.site/data/source/nlx_144509-1/page/2/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20">2</a></li><li><a class="not-rin" href="https://rrid.site/data/source/nlx_144509-1/page/3/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20">3</a></li><li><a class="not-rin" href="https://rrid.site/data/source/nlx_144509-1/page/4/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20">4</a></li><li><a class="not-rin" href="https://rrid.site/data/source/nlx_144509-1/page/2/search?q=%2A&l=&facet[]=Keywords%3Aanalysis&facet[]=Funding%20Agency%3Anhgri%20&facet[]=Funding%20Agency%3Abergen%20research%20foundation%20&facet[]=Funding%20Agency%3Anhlbi%20&facet[]=Funding%20Agency%3Anci%20">禄</a></li></ul></div> </div> <hr/> <div class="rin"> <div id="cant-find-rrid"> <div class="panel"> <div class="panel-body"> <p>Can't find your Tool?</p> <p>We recommend that you click <span class="btn btn-info help-tooltip-btn" data-name="rin-search-tips.html"><i class="fa fa-question-circle"></i></span> next to the search bar to check some helpful tips on searches and refine your search firstly. 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