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Cross-Organism Search
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> <HTML lang='en'><HEAD> <TITLE>Cross-Organism Search</TITLE> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"> <script src="https://code.jquery.com/jquery-3.5.1.min.js"></script> <script src="https://code.jquery.com/jquery-migrate-3.3.2.min.js"></script> <script> var $j = jQuery.noConflict(); </script> <!-- <link rel="stylesheet" type="text/css" href="/yui/build/assets/skins/sam/skin.css"> <link rel="stylesheet" type="text/css" href="/style.css" > User web site style sheet customization should use the following file: <link rel="stylesheet" type="text/css" href="/userWebsiteCustomization.css"> The previous 4 .css files are combined at web start up time by the Lisp fn publish-combined-static-files generating the following combined.css file. --> <!-- <link rel="stylesheet" href="/pure/pure.css" type="text/css"> --> <link rel="stylesheet" href="https://unpkg.com/purecss@2.0.6/build/base-min.css"> <link rel="stylesheet" href="https://unpkg.com/purecss@2.0.6/build/grids-min.css"> <link rel="stylesheet" href="https://unpkg.com/purecss@2.0.6/build/grids-responsive-min.css"> <link rel="stylesheet" type="text/css" href="https://cdnjs.cloudflare.com/ajax/libs/jstree/3.3.11/themes/default/style.min.css"> <link rel="stylesheet" type="text/css" href="/jstree-themes/proton/style.css"> <link rel="stylesheet" href="/css/BioCyc_Extra.css?v=28.5" type="text/css"> <link rel="stylesheet" type="text/css" href="/combined/combined.css?v=28.5"> <link rel="stylesheet" type="text/css" href="//cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css"> <!-- this has to go early --> <script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/yui/3.17.2/yui/yui-min.js"></script> <!-- <script src="https://cdnjs.cloudflare.com/ajax/libs/prototype/1.7.3/prototype.min.js"></script> --> <script type="text/javascript" src="/combined/combined-early.js?v=28.5"></script> <!-- Google tag (gtag.js) For a GA4 property--> <!-- Google tag (gtag.js) --> <script async src="https://www.googletagmanager.com/gtag/js?id=G-NVK8K9ZK0V"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'G-NVK8K9ZK0V'); </script> <!-- Google Tag Manager - Also needs to go early midford: I think this is for BioCyc2 property--> <script>(function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start': new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0], j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src= 'https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f); })(window,document,'script','dataLayer','GTM-W5T5DF7');</script> <!-- End Google Tag Manager --> <!-- Global site tag (gtag.js) - Google Analytics --> <!-- paley:Jun-15-2017 Comment these out, let them be autoloaded from the cdn: <script type="text/javascript" src="/yui3/build/yui-base/yui-base-min.js"></script> <script type="text/javascript" src="/yui3/build/base-build/base-build-min.js"></script> <script type="text/javascript" src="/yui3/build/event-custom-base/event-custom-base-min.js"></script> This file is not in the cloudflare cdn, so we need to load it from our own site. They're in the combined-early file <script type="text/javascript" src="/yui3/build/gallery-timer/gallery-timer-min.js"></script> These are bundled into the combined-early.js file: <script type="text/javascript" src="/yui/build/utilities/utilities.js"></script> LOADED SEPARATELY (see above) <script TYPE="text/javascript" SRC="/wupub/prototype.js"></script> <script TYPE="text/javascript" SRC="/image-map-resizer-master/js/imageMapResizer.min.js"></script> --> <!-- next 3 css for webgraphics --> <link rel="stylesheet" type="text/css" href="/yui/build/fonts/fonts-min.css" /> <!-- paley:Sep-10-2018 These are not found, and don't seem to be necessary. <link rel="stylesheet" type="text/css" href="/yui/build/button/assets/skins/sam/button.css" /> <link rel="stylesheet" type="text/css" href="/yui/build/container/assets/skins/sam/container.css" /> --> <script type="text/javascript" src="/webgraphics.js?v=28.5"></script> <script TYPE="text/javascript" > var onMenuBarReady = new YAHOO.util.CustomEvent("onMenuBarReady"); /* This event fires when we change the current organism using the organism * selector, so that subscribers can update the page accordingly. */ var organismChangedEvent = new YAHOO.util.CustomEvent("organismChanged"); /* If you update the version number here, make sure you also update it in pathwayTools.js (and the minified file)!!! */ document.addEventListener("DOMContentLoaded", function() { if (typeof(ptoolsJsVersion) == 'undefined' || ptoolsJsVersion !== '28.5') { console.log('reloading because of outdated javascript file'); window.location.reload(true); } }); </script> <script> </script> <script src="https://code.jquery.com/ui/1.11.4/jquery-ui.min.js"></script> <link rel="stylesheet" href="https://code.jquery.com/ui/1.11.4/themes/smoothness/jquery-ui.css"> <script src="https://unpkg.com/@popperjs/core@2"></script> <script src="https://unpkg.com/tippy.js@6"></script> <!-- Base Pathway Tools JavaScript code --> <script type="text/javascript" src="/pathwayTools-min.js?v=28.5"></script> <template id="sri-footer"> <footer class="footer-wide-margin-border-alt-color"> <div class="footer"> <div> <a> ©2024 SRI International, 333 Ravenswood Avenue, Menlo Park, CA 94025-3493 SRI International is an independent, nonprofit corporation. </a> <br> <a href="https://biocyc.org/subscription-terms.txt">Terms of Service</a> | <a href="https://www.sri.com/privacy-policy/">Privacy policy</a> | <a href="/disclaimer.shtml">Disclaimer</a> </div> <img src="/SRI-new-logo.png" height="35px" width="100px" alt='SRI International' style="margin-left: 173px" > </div> </footer> </template> <template id="changedb-and-quicksearch-template"> <!-- begin group db and search --> <!-- Database name and change link --> <div style="display:flex;flex-flow:row wrap;align-items:center;gap:6px 11px;"> <button class="changeDBBtn" id="changeDBBtn" onclick="showChooser(false);" > Change Current Database </button> <div style="line-height:20px"> <span style="vertical-align: middle;font-size: 16px;">Current Database: </span><i class="searchMenuDatabaseName"><a id="currentDatabaseName" class="dynDBName banner"></a> </i> </div> </div> <!-- End Database name and change link --> <!-- Quick Search --> <b style="font-size:16px;line-height:20px">Search in Current Database: </b> <form class="lgSearchMenu" id="qsform" action='/' name=substring onSubmit="if (this.elements[1].value != '') {this.action= '/'+orgID()+'/substring-search?type=NIL&object='+this.elements[1].value } else { return(false)};"> <input id="QSType" name=type type=hidden value="NIL"> <span id="QSContainer"> <input id="QSTextBox" class="inputQuickSearch" name="object" size="47" spellcheck="false" placeholder="Enter a gene, protein, metabolite or pathway..." aria-label="Search in Current Database: Enter a gene, protein, metabolite or pathway" title="Enter one of the following (all searches conducted only within the selected organism, unless otherwise indicated): A name or synonym for a compound, gene, protein or pathway. Spaces, punctuation and case are ignored. E.g. pyruvate, trpA Any substring of one of the above names, length >= 3. E.g. kinase, pyr A full or partial EC number. E.g. 1.2.1.4, 1.3.1 A full or partial InChI-key. E.g. CKLJMWTZIZZHCS An internal id (case-sensitive) for any compound, gene, protein, pathway, reaction or transcription-unit. E.g. CPLX0-3661, HEMN-RXN An id (case-sensitive) from another database to which this database contains links, e.g. UniProt, KEGG, ChEBI. Note that our set of links is not complete; even if an external id search returns no result the object may still be in our database. E.g. P00561, NP_414543, C00047 A locus id for any gene of any organism on the BioCyc website. E.g. FTU_0031, YPA_0017 (MetaCyc only) An organism or taxon name, to find pathways curated to that taxon. E.g. Bacillus, Shigella flexneri" > <button onclick="qsSubmitFn();" title="Search" class="searchButton"> <span class='screen-reader-only'>Search</span> <i class="fa fa-search" id='qsIcon'></i> </button> </span> </form> <!-- End Quick Search --> <!-- end group db and search --> </template> <script> templateToWebComponent("sri-footer"); //templateToCustomElement("sri-footer"); </script> <SCRIPT type='text/javascript'> <!-- multiorg_maxOrgs = 70; multiorg_initiallySelected = []; CrossOrgSearchOrgids = multiorg_initiallySelected; YAHOO.util.Event.onDOMReady(function() {outputSelectedOrgsforCrossOrgSearch(CrossOrgSearchOrgids, document.getElementById("selectedOrgs"), false);onMultiorgSelectorOK.subscribe(function(a) { CrossOrgSearchOrgids = a;outputSelectedOrgsforCrossOrgSearch(CrossOrgSearchOrgids, document.getElementById("selectedOrgs"), false);}); }); function toggleTypes(source) { var checkboxes = document.getElementsByName('types'); for(var i=0; i < checkboxes.length;i++) { checkboxes[i].checked = source.checked; } } function checkForm () { // var numOrgids=CrossOrgSearchOrgids.length; var types=document.orgselect.types; var numTypes=0; for (var i=0;i<types.length;i++) { if (types[i].checked) { numTypes++; } } var fields=document.orgselect.SearchFields; numFields=0; for (var i=0;i<fields.length;i++) { if (fields[i].checked) { numFields++; } } if ((numTypes>0)&&(numFields>0)) { return(true); } else { alert ('You must specify at least one Search Field, and at least one Type to restrict search to!'); return (false); } } function clearForm () { document.orgselect.terms.value=""; types=document.orgselect.types; document.orgselect.toggle.checked = false; for (i=0;i<types.length;i++) { types[i].checked = false; } fields=document.orgselect.SearchFields; for (i=0;i<fields.length;i++) { fields[i].checked = true; } CrossOrgSearchOrgids = []; document.orgselect.orgids.value = ""; clearMultiorgSelector(); } function combineOrgIDs () { document.orgselect.orgids.value = getOrglistStr(CrossOrgSearchOrgids); } //--> </SCRIPT> <!-- Text, Cite includes from Preferences --> <style type="text/css"> @import url(/looks/cite-mnemonic.css); </style> <!-- End Text, Cite includes from Preferences --> </HEAD> <BODY ID="body" CLASS="yui-skin-sam yui3-skin-sam"> <a class="skipLink" href="#mainContent">Skip to main content</a> <!--next line is used for determining text size for sizing window, tooltips, buttons, etc billingt:Jul-7-2014 --> <!-- NEW-LINE from RAB --> <!-- display: none is necessary or space will be left on the screen for this invisible area --> <span id='textSizeTestArea' style='visibility: hidden; display: none'></span> <!-- The top banner, we are in a body --> <!-- We need this div to have position:relative in order for the z-index of the menu stacking to work --> <div id="topBannerMenu" role='banner'> <div class="top-menubar-cell"> <TITLE></TITLE> <!-- ajaxUpdater defined in pathwayTools.js --> <div id='ilogin'> </div> <script type='text/javascript'> ajaxUpdater('ilogin', '/login-area'); </script> <!-- Begininng temporary message. See file temporary-message-help.txt in this directory for instructions on how to insert a temporary message --> <!-- The set of BioCyc temporary messages must all be inside the following div --> <div id=biocycTmpMessages> <div class=temporaryMsg> </div> </div> <!-- The set of EcoCyc temporary messages must all be inside the following div --> <div id=ecocycTmpMessages> <div class=temporaryMsg> </div> </div> <!-- The set of MetaCyc temporary messages must all be inside the following div --> <div id=metacycTmpMessages> <div class=temporaryMsg> </div> </div> <!-- The set of HumanCyc temporary messages must all be inside the following div --> <div id=humancycTmpMessages> <div class=temporaryMsg> </div> </div> <!-- The set of BsubCyc temporary messages must all be inside the following div --> <div id=bsubcycTmpMessages> <div class=temporaryMsg> </div> </div> <!-- The set of CyanoCyc temporary messages must all be inside the following div --> <div id=cyanocycTmpMessages> <div class=temporaryMsg> </div> </div> <script> YAHOO.util.Event.onContentReady("body", function() { if (typeof(defaultTypeObjectPage) == 'undefined') { console.log('reloading'); window.location.reload(true); } }); </script> <div class="menubar-wide-margin-border" role="menubar"> <div class="pure-g" style="margin-left:auto; margin-right:auto; max-width:1200px;"> <div class="pure-u-lg-5-12 pure-u-md-5-12 pure-u-sm-1-1"> <!-- BEGIN TOOLS MEGA MENU --> <div class="toolbar-dropdown" role="menuitem"> <button class="toolbar-dropbtn">Tools <i class="fa fa-caret-down"></i> </button> <div class="toolbar-dropdown-content" role="menu"> <div class="mega-row"> <div class="mega-column" id="MegaSearch" role="group"> <h3>Search</h3> <div class="vl" id="MegaSearchList"> <hr> <a href="/gene-search.shtml" role="menuitem">Search Genes, Proteins or RNAs</a> <a href="/pwy-search.shtml" role="menuitem">Search Pathways</a> <a href="/cpd-search.shtml" role="menuitem">Search Compounds</a> <a href="/rxn-search.shtml" role="menuitem">Search Reactions</a> <a id="growthMediaMenuItem" href="/gm-search.shtml" role="menuitem">Search Growth Media</a> <a href="/query.shtml" role="menuitem">Advanced Search</a> <a id="crossOrgSearch" href="/cross-org-search" role="menuitem">Cross Organism Search</a> <a id="blastMenuItem" class="orgspecific" href="/[ORGID]/blast.html" role="menuitem">BLAST Search Selected Databases</a> <a id="blastAllMenuItem" class="orgspecific" href="/[ORGID]/blast.html?refdb=ALL" role="menuitem"> BLAST All BioCyc</a> <a href="/full-text-search.shtml" role="menuitem">Google Search of this Site</a> </div> <!-- close vl --> </div> <div class="mega-column" id="MegaGenome" role="group"> <h3>Genome</h3> <div class="vl"> <hr> <a href="/[ORGID]/select-gen-el" class="orgspecific disable_for_multiorg" role="menuitem">Genome Browser<img src="/new.png"/ height=12 width=31></a> <a href="/[ORGID]/select-gen-el?classic=on" class="orgspecific disable_for_multiorg" role="menuitem">Genome Browser (Old)</a> <a href="/overviewsWeb/genOv.shtml" class="disable_for_multiorg" role="menuitem">Genome Overview</a> <a href="/cgweb" class="disable_for_multiorg" role="menuitem">Circular Genome Viewer</a> <a href="/overviewsWeb/regOv.shtml" class="disable_for_multiorg" role="menuitem">Regulatory Overview</a> <a class="orgspecific" href='/[ORGID]/class-tree?object=Gene-Ontology-Terms' role="menuitem">Browse Gene Ontology</a> <a href="/[ORGID]/select-gen-el?type=MAP-SEQ-COORDS" class="orgspecific disable_for_multiorg" role="menuitem">Map Sequence Coordinates</a> <h3 style="padding-top: 10px">SmartTables</h3> <hr> <a class="orgspecific requiresLogin" id="myFavoritesST" href="/group?id=FAVORITES" role="menuitem">My Favorites</a> <a class="orgspecific requiresLogin" href="/groups?orgid=[ORGID]" role="menuitem">My SmartTables</a> <a class="orgspecific" href="/groups?tab=PUBLIC&orgid=[ORGID]" role="menuitem">Public SmartTables</a> <a class="orgspecific" href="/groups?tab=SPECIAL&orgid=[ORGID]" role="menuitem">Special SmartTables</a> </div> <!-- close vl --> </div> <div class="mega-column" id="MegaMetabolism" role="group"> <h3>Metabolism</h3> <div class="vl"> <hr> <a class="orgspecific disable_for_multiorg" href="/overviewsWeb/celOv.shtml?orgid=[ORGID]" role="menuitem">Cellular Overview</a> <a href="/fba.shtml" class="disable_for_multiorg" role="menuitem">Run Metabolic Model</a> <a href="/dead-end-form.shtml" role="menuitem">Dead-end Metabolites</a> <a href="/chokepoint-form.shtml" role="menuitem">Chokepoint Reactions</a> <a class="orgspecific disable_for_multiorg" href="/meteng?organism=[ORGID]" role="menuitem">Metabolic Route Search</a> <a class="orgspecific" href="/MetNetExplorer.shtml?orgid=[ORGID]" role="menuitem">Metabolic Network Explorer</a> <a href="/metabolite-translation-service.shtml" role="menuitem">Metabolite Translation Service</a> <a href="/pathway-collage-info" role="menuitem">Pathway Collages</a> <a class="orgspecific" href='/[ORGID]/class-tree?object=Pathways' role="menuitem">Browse Pathway Ontology</a> <a class="orgspecific" href="/[ORGID]/class-tree?object=EC-Reactions" role="menuitem">Browse Enzyme Commission Ontology</a> <a class="orgspecific" href="/[ORGID]/class-tree?object=Compounds" role="menuitem">Browse Compound Ontology</a> <a class="orgspecific disable_for_multiorg" href="/poster-cellov?orgid=[ORGID]" role="menuitem">Generate Metabolic Map Poster</a> </div> <!-- close vl --> </div> <div class="mega-column" id="MegaAnalysis" role="group"> <h3>Analysis</h3> <hr> <a href="/comp-genomics" role="menuitem">Comparative Analysis</a> <a href="/dashboard/genome-dashboard-compare.shtml" role="menuitem">Comparative Genome Dashboard<img src="/new.png"/ height=12 width=31></a> <a href="/PToolsWebsiteHowto.shtml#omicsDataAnalysis" role="menuitem">Omics Data Analysis</a> <a class="orgspecific" href="/dashboard/dashboard-intro.shtml?orgid=[ORGID]" role="menuitem">Omics Dashboard</a> <a class="orgspecific" href="/[ORGID]/organism-summary" role="menuitem">Summary Statistics</a> <a class="orgspecific" href="/dashboard/genome-dashboard.shtml?orgid=[ORGID]" role="menuitem">Genome Dashboard</a> <a href="/cmpd-pwy-coverage.shtml" role="menuitem">Metabolomics Pathway Coverage</a> <a class="orgspecific" id="WCMBioCyc" href="/wcm-summary?orgid=[ORGID]" role="menuitem">Whole-Cell Model Summary</a> <a class="orgspecific" id="FuncGeneClusters" href="/[ORGID]/genome-context" role="menuitem">List Functional Gene Clusters</a> <a class="orgspecific" href="/msa.shtml?organism=[ORGID]&seq=s.gff" role="menuitem"> Multiple Sequence Alignment </a> <a href="/user-subscriptions.shtml" role="menuitem">Update Notifications</a> <div class="sub-toolbar-dropdown" role="menuitem"> <button class="sub-toolbar-dropbtn" style="color: black;">Reports <i class="fa fa-caret-down"></i> </button> <div class="sub-toolbar-dropdown-content" role="menu"> <div class="sub-vl"> <a class="orgspecific" href="/[ORGID]/release-notes" role="menuitem">History of updates</a> <a class="orgspecific disable_for_multiorg" href="/[ORGID]/sort-by-score.html" role="menuitem">Pathway evidence (sorted by score)</a> <a class="orgspecific disable_for_multiorg" href="/[ORGID]/hierarchical.html" role="menuitem">Pathway evidence (sorted by class)</a> <a class="orgspecific disable_for_multiorg" href="/[ORGID]/missing-rxns.html" role="menuitem">Pathway holes</a> </div> </div> </div> </div> </div> </div> </div> <!-- END OF TOOLS MEGA MENU --> <div class="toolbar-dropdown" role="menuitem"> <button class="toolbar-dropbtn">Sites <i class="fa fa-caret-down"></i></button> <div class="toolbar-dropdown-content" role="menu"> <a href="https://biocyc.org" role="menuitem">BioCyc</a> <a href="https://metacyc.org" role="menuitem">MetaCyc</a> <a href="https://ecocyc.org" role="menuitem">EcoCyc</a> <a href="https://humancyc.org" role="menuitem">HumanCyc</a> <a href="https://bsubcyc.org" role="menuitem">BsubCyc</a> <a 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class="toolbar-dropdown-content" role="menu"> <p> Desktop Application<br> Bring the power of BioCyc.org securely in-house, with the abilities to create and<br> edit PGDBs, perform metabolic modeling, and query/update using APIs. </p> <a href="https://pathwaytools.com" role="menuitem">More Information<br></a> <a href="https://biocyc.org/download-bundle.shtml" role="menuitem">Academic Licenses</a> <a href="https://share.hsforms.com/1qZSgeFYGSVqqSTKohHQITA3ipje" role="menuitem">Commercial Licenses</a> <!---- <a href="https://share.hsforms.com/13fwJvezjSDyUXl8BRPpkkQ3ipje" role="menuitem">Commercial Licenses</a>---> </div> </div> <div class="toolbar-dropdown" role="menuitem"> <button class="toolbar-dropbtn">Help <i class="fa fa-caret-down"></i> </button> <div class="toolbar-dropdown-content" role="menu"> <a href="/login-help.shtml" role="menuitem">Login/Subscription Problems</a> <div class="sub-toolbar-dropdown" role="menuitem"> <button class="sub-toolbar-dropbtn" style="color: black;">New Users <i class="fa fa-caret-down"></i> </button> <div class="sub-toolbar-dropdown-content" role="menu"> <a href="/quickstart.shtml" role="menuitem">BioCyc Quick Start Guide</a> <a href="/intro.shtml" role="menuitem">What is BioCyc?</a> <a href="/webinar.shtml" role="menuitem">BioCyc Video Tutorials</a> </div> </div> <div class="sub-toolbar-dropdown" role="menuitem"> <button class="sub-toolbar-dropbtn" style="color: black;">In-Depth Guides <i class="fa fa-caret-down"></i> </button> <div class="sub-toolbar-dropdown-content" role="menu"> <a href="/PToolsWebsiteHowto.shtml" role="menuitem">BioCyc Website User Guide</a> <a href="/BioCycUserGuide.shtml" role="UserGuide" role="menuitem">Guide to BioCyc Data Content</a> <a href="/metacyc/MetaCycUserGuide.shtml" role="UserGuide" role="menuitem">Guide to MetaCyc Data Content</a> <a href="/glossary.shtml" role="menuitem">Glossary</a> </div> </div> <a href="/publications.shtml" role="menuitem">How to Cite </a> <a href="/contact.shtml" role="menuitem">Contact Us/Licensing/Support</a> </div> </div> </div> <div class="pure-u-lg-7-12 pure-u-md-7-12 pure-u-sm-1-1" style="height: 49px"> <div class="login pure-g" id="loginMenuBar"> <!-- ajaxUpdater defined in pathwayTools.js --> <div id='subscriptionBanner' style="display:flex;flex-direction:row;justify-content: space-around;width:100%"> </div> <script type='text/javascript'> ajaxUpdater('subscriptionBanner', '/subscription-banner'); </script> </div> </div> <!-- Beginning of hidden/visible login overlay --> <div style="text-align: left; float: right; position: relative; left: 0;"> </div> </div> </div> </div> <div> <div class="whitespace-wide-margin-border" style="max-width: 1200px; margin-left: auto; margin-right: auto;display:flex;flex-flow:row wrap;align-items:center;justify-content:space-around"> <div id="small-logo"> <!-- was commented out, restored midford:Apr-20-2023 --> <img src="/graphics2021/BioCyc.svg" alt="BioCyc" onclick="window.location.href='https://biocyc.org'" > </div> <div> <div style="margin: 20px 0 0 10px;" id="changeDBAndQuickSearch"> </div> </div> </div> </div> <!-- The top menu bar --> </div> <!-- end topBannerMenu --> <!-- Begin template-require-login-overlay.shtml --> <!-- End template-require-login-overlay.shtml --> <!-- Placeholder for popup messages --> <div id="msgPopup"></div> <!--Fixed Navigation Box--> <div class="navBox" id="navBox" style="display:none" role="navigation" aria-label="Operations"> <div class='navBoxExpansion'> <a href="#" onclick='toggleNavBox()' aria-controls="navBoxBody" aria-expanded=true role="button"> <span id="navBoxHide"> <img src='/navbox-hide.png' alt='' width='9' height='9'> hide </span> <span id="navBoxShow"> <img src='/navbox-show.png' alt='' width='9' height='9'> show operations </span> </a> </div> <div id='navBoxBody'> <br> <div id='navBoxTitle'> <div class="navBoxItem"><i><a href="organism-summary" class="dynDBName" ></a></i></div> <div class="navBoxLabel" id='objtypeNavBox'></div> <div class='navBoxItem' id='objnameNavBox'></div> </div> <span class='section1'>OPERATIONS</span> <div id="navBoxOps"> </div> </div> </div> <!--End Fixed Navigation Box--> <div class="pageContentDynamic" role='main' id="mainContent"> <h1>Cross Organism Search</h1> This page allows you to perform searches across multiple databases within this server.<br>Please enter: <ol> <li> The term(s) or partial term(s) to search for, separated by spaces <li> The type(s) of objects to search <li> The field(s) within those objects to search <li> The organism databases to search within </ol> <p> Note that for metabolites, reactions, and pathways, the same identifier is used consistently across PGDBs, e.g., <br>to search for all organisms containing L-tryptophan biosynthesis, search for identifier TRPSYN-PWY. <p> <form name=orgselect action=cross-org-search> <h3>Search for Terms or Database Identifiers:</h3> <input type=text name=terms autocomplete=off autocorrect=off autocapitalize=off spellcheck=false value=""> <p style="font-size:11px">Example search terms:<br> pyruvate kinase<br> bilirubin<br><br>Example database identifier:<br>  CPD-3609</p> <div> <input type=radio name=disjunctp id=or value=or checked> Select items having <i>any</i> of the above Terms<br> <input type=radio name=disjunctp id=and value=and > Select items having <i>all</i> of the above Terms<br> </div> <div> <p> <h3>Fields to Search:</h3> <input type=checkbox name=SearchFields id=names value=names checked=true> Names<br><input type=checkbox name=SearchFields id=summary value=summary checked=true> Summary<br><div style='margin-top: 12px'></div><input type=checkbox name=SearchFields id=database identifier value=database identifier checked=true> Database Identifier<br> </p> </div> <div> <p> <h3>Types to Restrict Search to:</h3> <input type=checkbox name=toggle id="mainResToggleAll" checked=false onchange="toggleTypes(this)"> <b>Toggle All</b> <div style='margin: 0px 0px 0px 7px' id="mainResWrapper"> <input type=checkbox name=types id=proteins checked=false value=proteins> Proteins<br><input type=checkbox name=types id=enzymaticReactions checked=false value=enzymaticReactions> Enzymatic Reactions<br><input type=checkbox name=types id=compounds checked=false value=compounds> Compounds<br><input type=checkbox name=types id=reactions checked=false value=reactions> Reactions<br><input type=checkbox name=types id=pathways checked=false value=pathways> Pathways<br><input type=checkbox name=types id=allGenes checked=false value=allGenes> Genes<br><input type=checkbox name=types id=rnas checked=false value=rnas> RNAs<br> </p> </div> <div> <h3>Number of Results Per Page (between 1 and 1000):</h3> <input type="number" value="50" name="resultsCount" min="1" max="1000"> </div> <h3>Select One or More Organism Databases:</h3> <input type='button' value='Choose Organisms' onclick='showMultiorgChooser({allowClasses: true, allowSelectAll: true})'> <p>Current selections:<br> <div id='selectedOrgs' style='padding-left:40px'></div> <input type=hidden name=orgids> <input type=hidden name=sort value="score desc"> <p><input type=button value="Submit" onClick="if (checkForm()) {makePopup('Your search has been submitted.');combineOrgIDs();this.form.submit()}"> <input type=button value="Clear All" onClick="clearForm()"> </form> <script> let frameId = jQuery(`input[name='SearchFields']`).eq(2); let frameSel = '#' + frameId.attr('id'); jQuery(document).ready(function() { jQuery(frameSel).prop('checked', false); if (jQuery('#mainResToggleAll').prop('checked') === true) { jQuery('#mainResToggleAll').trigger('click'); } }); jQuery(document).on('click', frameSel, function() { if (jQuery(frameSel).prop('checked') === true) { jQuery('#names').prop('checked', false); jQuery('#summary').prop('checked', false); } }); jQuery(document).on('click', '#names', function() { if (jQuery('#names').prop('checked') === true && jQuery(frameSel).prop('checked') === true) { jQuery(frameSel).prop('checked', false); } }); jQuery(document).on('click', '#summary', function() { if (jQuery('#summary').prop('checked') === true && jQuery(frameSel).prop('checked') === true) { jQuery(frameSel).prop('checked', false); } }); jQuery(`#mainResWrapper input[type='checkbox']`).change(function() { for (let i = 0; i != jQuery(this).length; i++) { if (jQuery(this).eq(i).prop("checked") == false) jQuery('#mainResToggleAll').prop("indeterminate", true); } }); function makePopup (message) { if (jQuery('#confirm-popup-wrap').length == 0) { jQuery('#body').append(` <div id='confirm-popup-wrap'> <div id='confirm-popup'>${message}</div> </div> <style> #confirm-popup { display: none; position: fixed; left: 50%; padding: 10px; top: 156px; z-index: 999; padding: 10px; border-radius: 90px; background: orange; color: white; filter: drop-shadow(0 0 0.75rem rgba(0, 0, 0, 0.15)); } </style> </div> `); } if (jQuery('#confirm-popup')) { jQuery('#confirm-popup').fadeIn(800, function() { //$(this).show(); setTimeout(function() { jQuery('#confirm-popup').fadeOut('fast', function() { jQuery(this).hide(); }); }, 1500); }); } } </script> <hr><a href='#' onclick="window.open('/feedback.html?' + encodeURIComponent(location), 'bugreport', 'toolbar=no,dependent=yes,height=640,width=620,menubar=no,location=no,scrollbars=yes')" style="padding-left: 15px">Report Errors or Provide Feedback</a> <br><font size=-1 style="padding-left: 15px">Page generated by <a href="http://pathwaytools.org/" target=_top>Pathway Tools version 28.5</a> (software by SRI International) on Wed Apr 9, 2025, BIOCYC16B.<br><span style="padding-left: 15px;">HumanCyc version 28.5.</span></font><p> <!-- end pageContentDynamic --> <!-- This is stuff that used to go in the head and now should go towards the end of pages for efficiency --> <!-- <script type="text/javascript" src="/yui/build/container/container-min.js"></script> --> <!-- <script type="text/javascript" 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href="https://ecocyc.org/advisors.shtml">Advisory Board</a> <br> <a href="https://biocyc.org/credits.shtml">Contributors</a> <br> <a href="/credits.shtml">BioCyc Credits</a> <a href="/funding.shtml">BioCyc Funding Sources</a> </p> </div> </div> <div class="pure-u-lg-1-4 pure-u-md-1-2 pure-u-sm-1-1"> <div class="l-box"> <h4 class="content-footer-subhead">Follow Us</h4> <p class="whitespace-none"> <!-- <a href="https://www.facebook.com/BioCyc">Facebook</a><br> <a href="https://x.com/BioCyc">X</a><br> --> <a href="http://pathwaytools.blogspot.com">Pathway Tools Blog</a><br> <a href="/subscribe.shtml">Mailing List</a> <br><br> <a href="https://genomic.social/@biocyc" target="_blank"> <img src= "/mastodon-white.svg" alt="mastodon" rel="me" width="24" height="24"></a> <a href="https://twitter.com/BioCyc" target="_blank" onclick="this.href+='?url='+location.href"> <img src="/graphics2021/Xlogo.png" alt="twitter" width="29" height="24"></a> <a href="http://www.facebook.com/BioCyc" target="_blank"> <img src= "/graphics2021/f_logo_white.png" alt="facebook" width="24" height="24"></a> <br><br> <a href="https://biocyc.printify.me/products" target="_blank">Purchase BioCyc Mugs</a> </p> </div> </div> </div> </div> <sri-footer></sri-footer> <!-- End of BioCyc userFooterCustomization.shtml --> <div id='orgSelectorDialogCC'></div> <!-- Multi Organism Chooser Template --> <div id="multiorgSelectorDialog" style="display:none" class='resizableDialog' role='dialog' aria-modal='true' aria-labeled-by='multiorgSelectorDialogTitle'> <div class="hd"><b id='multiorgSelectorDialogTitle'>Specify List of Organism Databases</b></div> <div class="bd" id="multiorgSelectorBody"> <form id="multiorgSelectorForm" action='/'> <div id='legend' style="max-width:900px"></div> <div id='multiorg3columns'> <div> <h3>Select One or More Databases: <span id="multiorgMaxLabel"></span></h3> <div id="multiorgSelectorTabs" class="orgSelectorTabs" style='min-width:504px'> <ul> <li class="selected"><a href="#multiorgNameTab">By Name</a></li> <li><a href="#multiorgTaxTab">By Taxonomy</a></li> <li><a href="#multiorgMetadataTab">By Organism Properties</a></li> <li><a href="#multiorgSavedTab">My Lists</a></li> </ul> <div id="multiorgNameTab" class='multiorgselectorTab'> <div class='orgselectorByNameContents'> <div id="multiorgRightcontent" class='nameACColumn'> <label id="multiorgFilterOptions" style="display:block;text-align:right;font-size:smaller"> Organism Filter: <select id="multiorgFilter" onChange='updateMultiOrgFilter()'> </select> </label> <div id="multiorgselectorAutoComplete"> <input id="multiorgInput" type="text" aria-label="Start typing a genus, species and/or strain name" placeholder="Start typing a genus, species and/or strain name" spellcheck=false aria-autocomplete="list" > <div id="multiorgContainer" style="font-style:italic"></div> </div> <div id="multiorgnum"></div> </div> <div class="alphabetFilter"> <div class="screen-reader-only"> <h3>Filter organisms by first letter</h3> </div> <a href="javascript:alphabetClick('a')">A</a><br> <a href="javascript:alphabetClick('b')">B</a><br> <a href="javascript:alphabetClick('c')">C</a><br> <a href="javascript:alphabetClick('d')">D</a><br> <a href="javascript:alphabetClick('e')">E</a><br> <a href="javascript:alphabetClick('f')">F</a><br> <a href="javascript:alphabetClick('g')">G</a><br> <a href="javascript:alphabetClick('h')">H</a><br> <a href="javascript:alphabetClick('i')">I</a><br> <a href="javascript:alphabetClick('j')">J</a><br> <a href="javascript:alphabetClick('k')">K</a><br> <a href="javascript:alphabetClick('l')">L</a><br> <a href="javascript:alphabetClick('m')">M</a><br> <a href="javascript:alphabetClick('n')">N</a><br> <a href="javascript:alphabetClick('o')">O</a><br> <a href="javascript:alphabetClick('p')">P</a><br> <a href="javascript:alphabetClick('q')">Q</a><br> <a href="javascript:alphabetClick('r')">R</a><br> <a href="javascript:alphabetClick('s')">S</a><br> <a href="javascript:alphabetClick('t')">T</a><br> <a href="javascript:alphabetClick('u')">U</a><br> <a href="javascript:alphabetClick('v')">V</a><br> <a href="javascript:alphabetClick('w')">W</a><br> <a href="javascript:alphabetClick('x')">X</a><br> <a href="javascript:alphabetClick('y')">Y</a><br> <a href="javascript:alphabetClick('z')">Z</a><br> </div> </div> </div> <div id="multiorgTaxTab" class='multiorgselectorTab'> <label id="multiorgTaxAutoComplete"> <span style="padding-right:5px">Search for taxon in taxonomy tree: </span> <input id="multiorgTaxName" type="text" style="width:360px" /> <div id="multiorgTaxContainer"></div> </label> <div id="multiorgTaxTreeContainer" style="min-width:489px;overflow-y:auto;margin-top:12px"> <div id="multiorgSelectorTaxTree" class="ygtv-checkbox"></div> </div> </div> <div id="multiorgMetadataTab" style="min-width:489px;overflow-y:auto" class='multiorgselectorTab' > Find organism databases according to: <ul style="line-height:118%;margin-top:4px"> <li>Organism characteristics, e.g. pathogenicity = human <li>Collection metadata, e.g. human microbiome body site = blood <li>Database properties, e.g. # (number) of Genes < 500 </ul> <div id="mclause0" class="flexRowWrap"> <select id="mmdSlot0" onChange='updateMetadataSlot(0, "m")' aria-label='Property for constraint 1'> <option value=false selected>Select Property</option> </select> <select id="mmdConstraint0" onChange='updateMetadataSlot(0, "m")' aria-label='Operator for constraint 1'> <option value="c" selected>is</option> <option value="nc">is not</option> <option value="a">has any value</option> <option value="n">has no value</option> </select> <div id="mkeywordInput0" style="display:none" class="flexRow"> <select id="mmdKeywordOp0" onchange="updateForOp(0, 'mmdKeywordOp0', 'mmdSubstringAC0', 'm')" aria-label='Operator for constraint 1'> <option value="enum" selected>Exact Match</option> <option value="substr">Substring Match</option> </select> <div class = "mdSubstringInput" id="mmdSubstringAC0"> <input id="mmdKeyword0" type="text" aria-label='Value for constraint 1'> <div id="mmdKWContainer0"></div> </div> </div> <div id="mnumericInput0" style="display:none" class="flexRow"> <select id="mmdNumOp0" onchange="updateForOp(0, 'mmdNumOp0', 'mmdNum0', 'm')" aria-label='Numeric operator for constraint 1'> <option value="e" selected>= (approx.)</option> <option value="lt"><</option> <option value="lte">≤</option> <option value="gt">></option> <option value="gte">≥</option> <option value="enum">Select Values</option> </select> <input id="mmdNum0" type="text" aria-label='Value for constraint 1'> </div> <div id="mmdEnumContainer0" style="display:none"> <select id="mmdEnum0" multiple aria-label='Value for constraint 1'> </select> </div> </div> <div id="mclause1" style="display:none"> <select id="mconnector1" aria-label='Connector for constraint 2'> <option value='AND' selected>AND</option> <option value='OR'>OR</option> </select> <input id="mmdDelete1" type="button" value ="Remove Constraint" onclick='mdRemoveClause(1, "m")' aria-label='Remove Constraint 2'> <br> <div class="flexRowWrap"> <select id="mmdSlot1" onChange='updateMetadataSlot(1, "m")' aria-label='Property for constraint 2'> <option value=false selected>Select Property</option> </select> <select id="mmdConstraint1" onChange='updateMetadataSlot(1, "m")' aria-label='Operator for constraint 2'> <option value="c" selected>is</option> <option value="nc">is not</option> <option value="a">has any value</option> <option value="n">has no value</option> </select> <div id="mkeywordInput1" style="display:none" class="flexRow"> <select id="mmdKeywordOp1" onchange="updateForOp(1, 'mmdKeywordOp1', 'mmdSubstringAC1', 'm')" aria-label='Operator for constraint 2'> <option value="enum" selected>Exact Match</option> <option value="substr">Substring Match</option> </select> <div class = "mdSubstringInput" id="mmdSubstringAC1"> <input id="mmdKeyword1" type="text" aria-label='Value for constraint 2'> <div id="mmdKWContainer1"></div> </div> </div> <div id="mnumericInput1" style="display:none" class="flexRow"> <select id="mmdNumOp1" onchange="updateForOp(1, 'mmdNumOp1', 'mmdNum1', 'm')" aria-label='Numeric operator for constraint 2'> <option value="e" selected>= (approx.)</option> <option value="lt"><</option> <option value="lte">≤</option> <option value="gt">></option> <option value="gte">≥</option> <option value="enum">Select Values</option> </select> <input id="mmdNum1" type="text" aria-label='Value for constraint 2'> </div> <div id="mmdEnumContainer1" style="display:none"> <select id="mmdEnum1" multiple aria-label='Value for constraint 2'> </select> </div> </div> </div> <div id="mclause2" style="display:none"> <select id="mconnector2" aria-label='Connector for constraint 3'> <option value='and' selected>AND</option> <option value='or'>OR</option> </select> <input id="mmdDelete2" type="button" value="Remove Constraint" onclick='mdRemoveClause(2, "m")' aria-label='Remove Constraint 3'> <br> <div class="flexRowWrap"> <select id="mmdSlot2" onChange='updateMetadataSlot(2, "m")' aria-label='Property for constraint 3'> <option value=false selected>Select Property</option> </select> <select id="mmdConstraint2" onChange='updateMetadataSlot(2, "m")' aria-label='Operator for constraint 3'> <option value="c" selected>is</option> <option value="nc">is not</option> <option value="a">has any value</option> <option value="n">has no value</option> </select> <div id="mkeywordInput2" style="display:none" class="flexRow"> <select id="mmdKeywordOp2" onchange="updateForOp(2, 'mmdKeywordOp2', 'mmdSubstringAC', 'm')" aria-label='Operator for constraint 3'> <option value="enum" selected>Exact Match</option> <option value="substr">Substring Match</option> </select> <div class = "mdSubstringInput" id="mmdSubstringAC2"> <input id="mmdKeyword2" type="text" aria-label='Value for constraint 3'> <div id="mmdKWContainer2"></div> </div> </div> <div id="mnumericInput2" style="display:none" class="flexRow"> <select id="mmdNumOp2" onchange="updateForOp(2, 'mmdNumOp2', 'mmdNum2', 'm')" aria-label='Numeric operator for constraint 3'> <option value="e" selected>= (approx.)</option> <option value="lt"><</option> <option value="lte">≤</option> <option value="gt">></option> <option value="gte">≥</option> <option value="enum">Select Values</option> </select> <input id="mmdNum2" type="text" aria-label='Value for constraint 3'> </div> <div id="mmdEnumContainer2" style="display:none"> <select id="mmdEnum2" multiple aria-label='Value for constraint 3'> </select> </div> </div> </div> <div id="mclause3" style="display:none"> <select id="mconnector3" aria-label='Connector for constraint 4'> <option value='and' selected>AND</option> <option value='or'>OR</option> </select> <input id="mmdDelete3" type="button" value="Remove Constraint" onclick='mdRemoveClause(3, "m")' aria-label='Remove Constraint 4'> <br> <div class="flexRowWrap"> <select id="mmdSlot3" onChange='updateMetadataSlot(3, "m")' aria-label='Property for constraint 4'> <option value=false selected>Select Property</option> </select> <select id="mmdConstraint3" onChange='updateMetadataSlot(3, "m")' aria-label='Operator for constraint 4'> <option value="c" selected>is</option> <option value="nc">is not</option> <option value="a">has any value</option> <option value="n">has no value</option> </select> <div id="mkeywordInput3" style="display:none" class="flexRow"> <select id="mmdKeywordOp3" onchange="updateForOp(3, 'mmdKeywordOp3', 'mmdSubstringAC3', 'm')" aria-label='Operator for constraint 4'> <option value="enum" selected>Exact Match</option> <option value="substr">Substring Match</option> </select> <div class = "mdSubstringInput" id="mmdSubstringAC3"> <input id="mmdKeyword3" type="text" aria-label='Value for constraint 4'> <div id="mmdKWContainer3"></div> </div> </div> <div id="mnumericInput3" style="display:none" class="flexRow"> <select id="mmdNumOp3" onchange="updateForOp(3, 'mmdNumOp3', 'mmdNum3', 'm')" aria-label='Numeric operator for constraint 4'> <option value="e" selected>= (approx.)</option> <option value="lt"><</option> <option value="lte">≤</option> <option value="gt">></option> <option value="gte">≥</option> <option value="enum">Select Values</option> </select> <input id="mmdNum3" type="text" aria-label='Value for constraint 4'> </div> <div id="mmdEnumContainer3" style="display:none"> <select id="mmdEnum3" multiple aria-label='Value for constraint 4'> </select> </div> </div> </div> <div id="mclause4" style="display:none"> <select id="mconnector4" aria-label='Connector for constraint 5'> <option value='and' selected>AND</option> <option value='or'>OR</option> </select> <input id="mmdDelete4" type="button" value = "Remove Constraint" onclick='mdRemoveClause(4, "m")' aria-label='Remove Constraint 5'> <br> <div class="flexRowWrap"> <select id="mmdSlot4" onChange='updateMetadataSlot(4, "m")' aria-label='Property for constraint 5'> <option value=false selected>Select Property</option> </select> <select id="mmdConstraint4" onChange='updateMetadataSlot(4, "m")' aria-label='Operator for constraint 5'> <option value="c" selected>is</option> <option value="nc">is not</option> <option value="a">has any value</option> <option value="n">has no value</option> </select> <div id="mkeywordInput4" style="display:none" class="flexRow"> <select id="mmdKeywordOp4" onchange="updateForOp(4, 'mmdKeywordOp4', 'mmdSubstringAC4', 'm')" aria-label='Operator for constraint 5'> <option value="enum" selected>Exact Match</option> <option value="substr">Substring Match</option> </select> <div class = "mdSubstringInput" id="mmdSubstringAC4"> <input id="mmdKeyword4" type="text" aria-label='Value for constraint 5'> <div id="mmdKWContainer4"></div> </div> </div> <div id="mnumericInput4" style="display:none"> <select id="mmdNumOp4" onchange="updateForOp(4, 'mmdNumOp4', 'mmdNum4', 'm')" aria-label='Numeric operator for constraint 5'> <option value="e" selected>= (approx.)</option> <option value="lt"><</option> <option value="lte">≤</option> <option value="gt">></option> <option value="gte">≥</option> <option value="enum">Select Values</option> </select> <input id="mmdNum4" type="text" aria-label='Value for constraint 5'> </div> <div id="mmdEnumContainer4" style="display:none"> <select id="mmdEnum4" multiple aria-label='Value for constraint 5'> </select> </div> </div> </div> <div id="mclause5" style="display:none"> <select id="mconnector5" aria-label='Connector for constraint 6'> <option value='and' selected>AND</option> <option value='or'>OR</option> </select> <input id="mmdDelete5" type="button" value="Remove Constraint" onclick='mdRemoveClause(5, "m")' aria-label='Remove Constraint 6'> <br> <div class="flexRowWrap"> <select id="mmdSlot5" onChange='updateMetadataSlot(5, "m")' aria-label='Property for constraint 6'> <option value=false selected>Select Property</option> </select> <select id="mmdConstraint5" onChange='updateMetadataSlot(5, "m")' aria-label='Operator for constraint 6'> <option value="c" selected>is</option> <option value="nc">is not</option> <option value="a">has any value</option> <option value="n">has no value</option> </select> <div id="mkeywordInput5" style="display:none" class="flexRow"> <select id="mmdKeywordOp5" onchange="updateForOp(5, 'mmdKeywordOp5', 'mmdSubstringAC5', 'm')" aria-label='Operator for constraint 6'> <option value="enum" selected>Exact Match</option> <option value="substr">Substring Match</option> </select> <div class = "mdSubstringInput" id="mmdSubstringAC5"> <input id="mmdKeyword5" type="text" aria-label='Value for constraint 6'> <div id="mmdKWContainer5"></div> </div> </div> <div id="mnumericInput5" style="display:none" class="flexRow"> <select id="mmdNumOp5" onchange="updateForOp(5, 'mmdNumOp5', 'mmdNum5', 'm')" aria-label='Numeric operator for constraint 6'> <option value="e" selected>= (approx.)</option> <option value="lt"><</option> <option value="lte">≤</option> <option value="gt">></option> <option value="gte">≥</option> <option value="enum">Select Values</option> </select> <input id="mmdNum5" type="text" aria-label='Value for constraint 6'> </div> <div id="mmdEnumContainer5" style="display:none"> <select id="mmdEnum5" multiple aria-label='Value for constraint 6'> </select> </div> </div> </div> <br> <div class="flexRow"> <input id="maddClause" type="button" value = "Add Constraint" onclick='mdAddClause("m")' style="display:none"> <input id="mmdSearch" type="button" value = "Find Organisms" onclick = 'processMdQuery(true, "m")'> </div> <div id="mmdResults" class='yui3-skin-sam'></div> </div> <div id="multiorgSavedTab" class='multiorgselectorTab' style="overflow-y:auto"> <div style="padding-bottom:20px"> <span>Database lists include both predefined lists and lists that are saved as SmartTables that you can edit from your <a href="/smarttables" target="new.window">My SmartTables</a> page. To add all organisms from a saved list, check the box next to the list name and then click the "Add" button. </span> </div> <div id="multiorgSavedTree" class="ygtv-checkbox"></div> <div class="requiresLogin" style="padding-top:50px"> <span class="requiresNoSavedOrglist requiresLogin"> You have no saved database lists </span> </div> <div class="requiresNotLoggedIn" style="padding-top:50px"> Log in and reload this page to access your saved database lists. </div> </div> </div> <div id="tierKey" style="padding-top:3px"> <span class="tier1">Tier 1</span> and <span class="tier2">Tier 2</span> databases are displayed with orange and blue backgrounds, respectively. </div> </div> <div class='buttons flexCol' style="gap:4px;margin:3px;"> <div id="multiorgSelectAllRow"> <input type="button" id="multiorgSelectAllBtn" class="disableWhenAllSelected" value="Select All" onclick="multiorgSelectAll()"> </div> <input type="button" id="multiorgAddToList" class="disableWhenAllSelected" value="Add →" onclick="addNewSelections()"> <input type="button" id="multiorgDeleteFromList" class="disableWhenAllSelected" value="Remove ←" onclick="deleteMultiorgOptions(false)"> <input type="button" id="multiorgClearAll" value="Clear All" onclick="deleteMultiorgOptions(true)"> <input type="button" id="moveup" value="Up ↑" onclick="moveUpOption()"> <input type="button" id="movedown" value="Down ↓" onclick="moveDownOption()"> </div> <div> <label for="multiorgSelection"><h3>Current Selection</h3></label> <span id="multiNumSelected">0</span> databases or taxa currently selected. <p> <div id='multiorgSelectionDiv'> <select multiple id="multiorgSelection"> </select> </div> <div class="requiresLogin" id="rememberAsST"> <fieldset style="border:none;padding:0"> <legend style="padding-top:3px"> Remember Selection as SmartTable:</legend> <label> <input type="radio" name="stSave" value="new" checked> Create New </label> <label> <input type="radio" name="stSave" value="old"> Update Existing </label> <div style="padding-top:3px"> <input type="text" id="orglistname" style="width:200px" placeholder="Enter SmartTable Name"> <select id="savedOrglistUpdate" class="savedOrglistSelectEl" aria-label="Select an organism SmartTable to update" style="display:none"> </select> <input type="button" value="Save" title="Clicking this button will save or update the specified organism SmartTable to refer to the currently selected databases. It will not close this dialog or submit your choices. If no databases are currently selected, clicking this button will cause the named SmartTable to be deleted. SmartTables saved here can be accessed from the My Lists tab."> </div> </fieldset> </div> <div class="requiresNotLoggedIn" style="padding-top:3px"> Note: if you create a user account and log in, you can save your database lists for next time. </div> </div> </div> </form> </div> </div> <script type="text/javascript"> multiorg_maxOrgs = 70 </script> <!-- End Multi Organism Chooser Template --> <script type="text/javascript"> if (forceOrgID && forceOrgID != "DEFAULT") setOrganism(forceOrgID); </script> <script src="https://unpkg.com/@popperjs/core@2"></script> <script src="https://unpkg.com/tippy.js@6"></script> <script> /* following relates to tooltips for template-top-menubar */ var subTipContent; subTipContent = "You are not connected to a paid subscription, which limits your access to BioCyc. The EcoCyc database is free."; var accelTipContent = "Create a free account and receive one month of free access to BioCyc. Even if your institution already subscribes to BioCyc, you still need to create an account for ongoing access."; if (subTipContent) { tippy('#subscribe', { content: subTipContent, theme: 'biocyc', placement: 'bottom', plugins: [hideOnEsc] }); } tippy('#account', { content: accelTipContent, theme: 'biocyc', placement: 'bottom', plugins: [hideOnEsc] }); /* following relates to tooltip for MetaCyc */ tippy('#metacycRef', { theme: 'biocyc', content: "MetaCyc is a curated database of metabolic enzymes and pathways from all domains of life.", placement: 'right', plugins: [hideOnEsc] }); </script> </BODY> </HTML>