PDB/EMDB/SASBDB browser

<!DOCTYPE HTML><meta http-equiv="content-type" content="text/html; charset=UTF-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width,initial-scale=1.0,user-scalable=yes"><meta name="theme-color" content="#377"><title>PDB/EMDB/SASBDB browser - Yorodumi</title><link rel="icon" href="img/lk-miru.gif"><link href="//netdna.bootstrapcdn.com/font-awesome/4.7.0/css/font-awesome.min.css" rel="stylesheet"><script src="//code.jquery.com/jquery-3.4.1.min.js"></script><script src="js/jquery-ui.min.1.12.1.js"></script><style> :root{--col-dark:#377;--col-medium:#8bb;--col-bright:#dee;}html,body{height:100%;}button{font-size:medium}button img,button{vertical-align:middle}button,a,select,label,.lk,.clickable{cursor:pointer}.clickable:hover{color:blue;}li{margin:0.3em 0 0.3em 1em;padding:0}p{margin:0.3em 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class="lkicon">Movie</h2><div id="oc_div_page_menu" class="oc_div lev2"><ul id="movlist"></ul><span onclick="_pop.up(this)" data-pop="<ul><li>Size: <button onclick="_pmov.size(-50)"><</button><button class="sizebtn" onclick="_pmov.size(0)"><div class="sizebox_ss"></div></button><button class="sizebtn" onclick="_pmov.size(1)"><div class="sizebox_s"></div></button><button class="sizebtn" onclick="_pmov.size(2)"><div class="sizebox_m"></div></button><button class="sizebtn" onclick="_pmov.size(3)"><div class="sizebox_l"></div></button><button class="sizebtn" onclick="_pmov.size(4)"><div class="sizebox_ll"></div></button><button onclick="_pmov.size(50)">></button><li><button onclick="_pmov.tile()">tile</button><li><button onclick="_pmov.play(1)"><img src="img/lk-play.gif" class="lkicon">Play</button><button onclick="_pmov.play()"><img src="img/lk-pause.gif" class="lkicon">Pause</button><li>Orientation:<table class="noborder"><tr><td><td><button onclick="_pmov.ori2('top')"><img src="img/top.gif" decoding="async"></button><td><tr><td><button onclick="_pmov.ori2('left')"><img src="img/left.gif" decoding="async"></button><td><button onclick="_pmov.ori2('front')"><img src="img/front.gif" decoding="async"></button><td><button onclick="_pmov.ori2('right')"><img src="img/right.gif" decoding="async"></button><tr><td><button onclick="_pmov.ori2('back')"><img src="img/back.gif" decoding="async"></button><td><button onclick="_pmov.ori2('bottom')"><img src="img/bottom.gif" decoding="async"></button><td><button onclick="_pmov.ori2('cut')"><img src="img/cut.gif" decoding="async"></button></table></ul>" class="poptrg"><img src="img/lk-opt.gif" class="lkicon">Controller</span></div></div><div id="vwctrl" class="hide"><h2 id="h_page_menu" onclick="_hdiv.oc('page_menu')"><div id="oc_btn_page_menu" class="oc_btn">-</div><img src="img/lk-view.gif" class="lkicon">Structure viewers</h2><div id="oc_div_page_menu" class="oc_div lev2"><ul id="vwlist"></ul></div><h2 id="h_i12" onclick="_hdiv.oc('i12')"><div id="oc_btn_i12" class="oc_btn">+</div>Viewer log</h2><div id="oc_div_i12" class="oc_div lev2 hide"><div id="cmdhist"></div></div></div><h2 id="h_page_menu" onclick="_hdiv.oc('page_menu')"><div id="oc_btn_page_menu" class="oc_btn">-</div>This page</h2><div id="oc_div_page_menu" class="oc_div lev2"><button onclick="_hdiv.all()">Show/hide all</button><span class="nw"><input type="checkbox" id="hdiv_exc"><label for="hdiv_exc">Exclusive</label></span><ul><li class="clickable" onclick="_hdiv.focus('open')"><img src="img/lk-open.gif" class="lkicon">Open data</li><li class="clickable" onclick="_hdiv.focus('about')"><img src="img/lk-help.gif" class="lkicon">About Yorodumi</li></ul></div><h2 id="h_i13" onclick="_hdiv.oc('i13')"><div id="oc_btn_i13" class="oc_btn">-</div>This web site</h2><div id="oc_div_i13" class="oc_div lev2"><ul><nav><li itemscope="itemscope" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="https://pdbj.org" itemprop="url" target="_blank"><img src="img/lk-pdbj.gif" class="lkicon"><span itemprop="title">PDBj</span></a></li><ul class="pankuzu"><li><img src="img/lk-miru.gif" decoding="async"><span itemprop="title">Yorodumi</span></li></ul></nav><li><form class="topline" method="get" action="ysearch.php"><a href="ysearch.php" itemprop="url"><img src="img/lk-search.gif" class="lkicon"><span itemprop="title">Cross-search</span></a>: <input type="search" class="acomp" name="kw" list="acomp_kw" size="15"></form><li><a href="." itemprop="url"><img src="img/lk-emn.gif" class="lkicon"><span itemprop="title">EM Navigator</span></a> <span onclick="_pop.up(this)" data-pop="<ul><li><a href="esearch.php" itemprop="url"><img src="img/lk-search.gif" class="lkicon"><span itemprop="title">EMN Search</span></a><li><a href="stat.php" itemprop="url"><img src="img/lk-statistics.gif" class="lkicon"><span itemprop="title">EMN Statistics</span></a><li><a href="gallery.php" itemprop="url"><img src="img/lk-gallery.gif" class="lkicon"><span itemprop="title">EMN Gallery</span></a><li><a href="pap.php?em=1" itemprop="url"><img src="img/lk-article.gif" class="lkicon"><span itemprop="title">EMN Papers</span></a><li><a href="covid19.php" itemprop="url"><img src="img/lk-link.gif" class="lkicon"><span itemprop="title">Covid-19 info</span></a><li><a href="doc.php?tag=emn" itemprop="url"><img src="img/lk-help.gif" class="lkicon"><span itemprop="title">About EM Navigator</span></a></ul>" class="poptrg"><i class="fa fa-plus-square large"></i></span><li><a href="quick.php" itemprop="url"><img src="img/lk-miru.gif" class="lkicon"><span itemprop="title">Yorodumi</span></a> <span onclick="_pop.up(this)" data-pop="<ul><li><a href="ysearch.php" itemprop="url"><img src="img/lk-search.gif" class="lkicon"><span itemprop="title">Yorodumi Search</span></a><li><a href="pap.php" itemprop="url"><img src="img/lk-article.gif" class="lkicon"><span itemprop="title">Yorodumi Papers</span></a><li><a href="taxo.php" 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Major update of PDB</h3><div id="oc_div_i9" class="oc_div hide"><p class="bld">Major update of PDB</p><ul class="doc_ul"><li>wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.</li><li>This is a major update changing the version number from 4 to 5, and with <i>Remediation</i>, in which all the entries are updated.</li><li>In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).</li><li>Now, EM Navigator and Yorodumi are based on the updated data.</li></ul><p class="small"><b>External links</b>:<a href="https://www.wwpdb.org/documentation/remediation" target="_blank"><img src="img/lk-link.gif" class="lkicon">wwPDB Remediation</a><span class="sep"> / </span><a href="https://www.wwpdb.org/news/news?year=2017#5963997661fd3d50915a4af7" target="_blank"><img src="img/lk-link.gif" class="lkicon">Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive</a></p></div><p><a href="doc.php?type=news" itemprop="url"><img src="img/lk-help.gif" class="lkicon"><span itemprop="title">Read more</span></a></p></div><h2 id="h_i11" onclick="_hdiv.oc('i11')"><div id="oc_btn_i11" class="oc_btn">-</div>Yorodumi</h2><div id="oc_div_i11" class="oc_div lev2"><p class="bld">Thousand views of thousand structures</p><ul class="doc_ul"><li>Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.</li><li>This page is also the successor to <b>EM Navigator detail page</b>, and also detail information page/front-end page for <i>Omokage search</i>.</li><li>The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". 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New EM Navigator & Yorodumi</span><span class="sep"> / </span><span onclick="_pop.up(this)" data-pop="<span class="loadingbar"><img src="img/loading.gif" decoding="async"></span>" data-url="ajax.php?mode=doc&id=about_pap&ajax=1" class="poptrg"><img src="img/lk-help.gif" class="lkicon">Yorodumi Papers</span><span class="sep"> / </span><span onclick="_pop.up(this)" data-pop="<span class="loadingbar"><img src="img/loading.gif" decoding="async"></span>" data-url="ajax.php?mode=doc&id=jmol&ajax=1" class="poptrg"><img src="img/lk-help.gif" class="lkicon">Jmol/JSmol</span><span class="sep"> / </span><span onclick="_pop.up(this)" data-pop="<span class="loadingbar"><img src="img/loading.gif" decoding="async"></span>" data-url="ajax.php?mode=doc&id=func_homology&ajax=1" class="poptrg"><img src="img/lk-help.gif" class="lkicon">Function and homology information</span><span class="sep"> / </span><span onclick="_pop.up(this)" data-pop="<span class="loadingbar"><img src="img/loading.gif" decoding="async"></span>" data-url="ajax.php?mode=doc&id=new_emn_changes&ajax=1" class="poptrg"><img src="img/lk-help.gif" class="lkicon">Changes in new EM Navigator and Yorodumi</span></p></div><p><a href="doc.php?tag=ym" target="_blank">Read more</a></p></div></div><footer><div id="simple_bottom"><a href="." itemprop="url"><img src="img/lk-emn.gif" class="lkicon"><span itemprop="title">EM Navigator</span></a> <span onclick="_pop.up(this)" data-pop="<ul><li><a href="esearch.php" itemprop="url"><img src="img/lk-search.gif" class="lkicon"><span itemprop="title">EMN Search</span></a><li><a href="stat.php" itemprop="url"><img src="img/lk-statistics.gif" class="lkicon"><span itemprop="title">EMN Statistics</span></a><li><a href="gallery.php" itemprop="url"><img src="img/lk-gallery.gif" class="lkicon"><span itemprop="title">EMN Gallery</span></a><li><a href="pap.php?em=1" itemprop="url"><img src="img/lk-article.gif" class="lkicon"><span itemprop="title">EMN Papers</span></a><li><a href="covid19.php" itemprop="url"><img src="img/lk-link.gif" class="lkicon"><span itemprop="title">Covid-19 info</span></a><li><a href="doc.php?tag=emn" itemprop="url"><img src="img/lk-help.gif" class="lkicon"><span itemprop="title">About EM Navigator</span></a></ul>" class="poptrg"><i class="fa fa-plus-square large"></i></span> <a href="quick.php" itemprop="url"><img src="img/lk-miru.gif" class="lkicon"><span itemprop="title">Yorodumi</span></a> <span onclick="_pop.up(this)" data-pop="<ul><li><a href="ysearch.php" itemprop="url"><img src="img/lk-search.gif" class="lkicon"><span itemprop="title">Yorodumi Search</span></a><li><a href="pap.php" itemprop="url"><img src="img/lk-article.gif" class="lkicon"><span itemprop="title">Yorodumi Papers</span></a><li><a href="taxo.php" itemprop="url"><img src="img/lk-taxo.gif" class="lkicon"><span itemprop="title">Yorodumi Species</span></a><li><a href="doc.php?tag=ym" itemprop="url"><img src="img/lk-help.gif" class="lkicon"><span itemprop="title">About Yorodumi</span></a></ul>" class="poptrg"><i class="fa fa-plus-square large"></i></span> <a href="omo-search.php" itemprop="url"><img src="img/lk-omokage.gif" class="lkicon"><span itemprop="title">Omokage search</span></a> <span onclick="_pop.up(this)" data-pop="<ul><li><a href="doc.php?tag=omos" itemprop="url"><img src="img/lk-help.gif" class="lkicon"><span itemprop="title">About Omokage search</span></a></ul>" class="poptrg"><i class="fa fa-plus-square large"></i></span> <a href="doc.php" itemprop="url"><img src="img/lk-help.gif" class="lkicon"><span itemprop="title"></span></a> <span onclick="_pop.up(this)" data-pop="<ul><li><a href="doc.php?type=info" itemprop="url"><img src="img/lk-help.gif" class="lkicon"><span itemprop="title">Help</span></a><li><a href="doc.php?type=faq" itemprop="url"><img src="img/lk-help.gif" class="lkicon"><span itemprop="title">FAQ</span></a><li><a href="doc.php?type=news" itemprop="url"><img src="img/lk-help.gif" class="lkicon"><span itemprop="title">News</span></a><li><a href="doc.php?tag=about" itemprop="url"><img src="img/lk-help.gif" class="lkicon"><span itemprop="title">Pages</span></a></ul>" class="poptrg"><i class="fa fa-plus-square large"></i></span><br><a href="https://pdbj.org" itemprop="url" target="_blank"><img src="img/lk-pdbj.gif" class="lkicon"><span itemprop="title">Protein Databank Japan (PDBj)</span></a> <a href="https://pdbj.org/help/" itemprop="url" target="_blank"><img src="img/lk-help.gif" class="lkicon"><span itemprop="title">PDBj help</span></a> <a href="https://pdbj.org/contact/" itemprop="url" target="_blank"><img src="img/lk-contact.gif" class="lkicon"><span itemprop="title">Contact us</span></a><br><a href="doc.php?id=developer">Developed by <img src="img/face.jpg" decoding="async"> H. 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this.$menu_apps.mol.val(this.conf.apps.mol)},select_defvw:function(type,domobj){var v=$(domobj).val();if(v==this.conf.apps[type])return;this.conf.apps[type]=v;_localstr.set("viewer.apps."+type,v);this.init_vwmenu()},open:function(did,param){var o={};var viewer_appli=this.conf.apps[param&&param.map?"map":"mol"];var win_id=viewer_appli+"-"+did;this.$menuctrl.slideDown("fast");if(param){if(param.obj)o=$(param.obj).data(viewer_appli);if(param.cmd&&param.cmd[viewer_appli])o=param.cmd[viewer_appli];if(o){o.trg_obj= param.obj;this.que(win_id,o,viewer_appli)}}if(this.wins[win_id]&&!this.wins[win_id].closed){this.wins[win_id].focus();return false}$(_entitem("mol",did)).appendTo("#vwlist").attr("id","vwidx_"+win_id).data("wid",win_id).slideDown("medium");this.wins[win_id]=window.open(phpvar.vwurl[viewer_appli]+did,win_id,"menubar=no,location=no,scrollbars=0,"+"width="+this.conf.winsize[0]+",height="+this.conf.winsize[1]);return true},que:function(win_id,que,vapp){if(!que)return;vapp=vapp||"viewer";this.ques[win_id]= this.ques[win_id]||[];this.ques[win_id].push(que);clearInterval(this.qtimer[win_id]);this.qloopcnt[win_id]=0;this.qtimer[win_id]=setInterval(function(){++this.qloopcnt[win_id];if(this.qloopcnt[win_id]>50){this.msg_que(win_id,"timeout");this.clear_que(win_id);return}if(this.wins[win_id]&&this.wins[win_id].closed){this.clear_que(win_id);delete this.wins[win_id];this.msg_que(win_id,"window is closed");return}if(!this.wins[win_id]||!this.wins[win_id]._popvw||!this.wins[win_id]._popvw.ready){this.msg_que(win_id, "not ready");return}clearInterval(this.qtimer[win_id]);this.wins[win_id].focus();this.wins[win_id]._popvw.que_exe(this.ques[win_id]);this.clear_que(win_id);this.msg_que(win_id,"ok")}.bind(this),500)},clear_que:function(win_id){this.ques[win_id]=[];clearInterval(this.qtimer[win_id])},msg_que:function(win_id,str){this.cmdhist(win_id,"que of "+win_id+": "+str)},win:function(flg,domobj){var wid=$(domobj).parent().data("wid");var o=this.wins[wid];if(!o||o.closed)this.closed(wid);if(flg){window.blur(); o.focus()}else o.close()},winsized:function(wh){_localstr.setjson("viewer.winsize",wh);this.conf.winsize=[wh[0],wh[1]]},close_all:function(){$.each(this.wins,function(win_id,o_win){if(o_win.closed)return;o_win.close()});this.$menuctrl.slideUp("fast")},closed:function(win_id){delete this.wins[win_id];this.cmdhist(win_id,"Window closed","green");$("#vwidx_"+win_id).hide("medium",function(){$(this).detach()});if(Object.keys(this.wins).length==0){this.cmdhist("","All closed","green");this.$menuctrl.slideUp("fast")}}, cmdhist:function(win_id,str,col){if(!str)return;if(this.cmdhist_lastmsg==win_id+str)return;this.cmdhist_lastmsg=win_id+str;if(win_id!=this.cmdhist_lastid){this.$cmdhist_box.append('<p class="green bld">['+win_id+"]</p>");this.cmdhist_lastid=win_id}this.$cmdhist_box.append("<p></p>");this.$cmdhist_box.children("p:last").text(str).addClass(col);if(this.$cmdhist_box.children("p").length>100)this.$cmdhist_box.children("p:first").remove();this.$cmdhist_box.scrollTop(1E4)},mousepick:function(wn,str){var a= str.replace(/^.*?\[(.+?)\](.+?):(.+?)\.(.+?) #(.*?) .+$/,"$1,$2,$3,$4,$5").split(",");this.$pick_id.text(wn.replace("jmol-",""));this.$pick_chain.text(a[2]);this.$pick_res.text(a[0]+"-"+a[1]);this.$pick_atom.text(a[3]+"-"+a[4]);var o=this.$pick_img;$.get(phpvar.idservadr+a[0],function(data){if(data=="")o.slideUp("fast");else o.html(data).slideDown("fast")})}}; function _entitem(type,data_id,movnum){var id=data_id.replace(/^.+-/,"");var db=data_id.substr(0,1).toLowerCase();return type=="mol"?phpvar.vwidx_bar.replace("__imgurl__",phpvar.imgurl.vw[db].replace("__id__",id)).replace("__str__",id):phpvar.movidx_bar.replace("__imgurl__",phpvar.imgurl.mov[db].replace("__id__",id).replace("__num__",movnum||(db=="e"?2:"dep"))).replace("__str__",id+(movnum?" #"+movnum:""))}; $(function(){$(".asymbar_box").click(function(){$(this).children(".asymbar_tx").toggle()});$(".chemsvg").click(function(){var o=$(this);var s=o.width()==100?500:100;o.animate({width:s,height:s},"medium")});$("#valrep_img").click(function(){var o=$(this);o.animate({width:o.width()>300?300:600},"medium")});$(".svgimg").click(function(){var $o=$(this);var flg_large=$o.height()>300;$o.animate({height:flg_large?100:500},"medium",function(){flg_large?_pop.hide():""})});$(".eqimg").click(function(){var $t= $(this);$t.hasClass("eqimgl")?$t.removeClass("eqimgl"):$t.addClass("eqimgl")});if(phpvar.entinfo&&phpvar.entinfo.id){var id=(phpvar.entinfo.db=="emdb"?"e":"")+phpvar.entinfo.id,ids_old=_localstr.getjson("hist_ids")||[],ids=[];for(i in ids_old){if(ids_old[i]==id)continue;ids.unshift(ids_old[i])}ids.unshift(id);_localstr.setjson("hist_ids",ids.slice(0,50))}_randimg.init();_slcimg.init()}); var _randimg={$box:$("#randimg"),$btns:$(".randimgbtn"),$histbox:$("#histimgbox"),flg:{rand:false,hist:false},init:function(){this.$box.is(":visible")&&this.ckget()},rep:function(mode,obj){this.$btns.removeClass("shine");obj&&$(obj).addClass("shine");this.$box._loadex({u:"ajax.php",v:{mode:"randimg",rmode:mode,t:Date()},func:function(){_localstr.set("randimg_ids",$("#randimg_ids").data("ids"))}})},ckget:function(){if(this.$box.html())return;var ids=_localstr.get("randimg_ids");if(!ids){this.rep(); return}this.$box._loadex({u:"ajax.php",v:{mode:"randimgck",ids:_localstr.get("randimg_ids"),t:Date()}})},hist:function(){if(this.$histbox.html())return;this.$histbox._loadex({u:"ajax.php",v:{mode:"randimghist",t:Date(),ids:_localstr.get("hist_ids")}})},hist_clr:function(){_localstr.set("hist_ids","");this.$histbox.hide("medium")}}; var _dettab={get:function(mode,eid){var $o=$("#box"+mode+eid);if($o.html())return;$o.load("quick-ajax.php",{ajax:mode,id:phpvar.entinfo.did,eid:eid},function(){$(this).prev().hide()})},get_chemlink:function(chemid){$o=$("#chemlink_"+chemid);if($o.html())return;$o.load("ajax.php",{mode:"chemlinks",id:chemid},function(){$(this).prev().hide()})},reget:function(mode,eid,aid){$("#box"+mode+eid).load("quick-ajax.php",{ajax:mode,id:phpvar.entinfo.did,eid:eid,aid:aid})}}; var _slcimg={sizing:false,line_reset:true,$lines:$(".l_slc"),$imgs:$("#pstable td img"),$resizebtns:$(".pssize"),$xbtn:$("#pstable tr th button.xbtn"),$td:$("#pstable td"),init:function(){var that=this;$(".slc").hover(function(){that.hov_in(this)},function(){that.hov_out()});this.$lines.mouseover(function(){$(this).stop().hide()})},hov_in:function(domobj){if(this.sizing)return;var i=$(domobj).attr("id"),hov={ang:i.substr(4,1),lev:i.substr(5,1)},angs=["z","y","x"],levs=["a","b","c","_","s"],lev,cur= {},$img,img={},$line,ani1,ani2,i,j;this.$lines.stop(1,1).fadeOut(0.5);for(i in angs)for(j in levs){cur={ang:angs[i],lev:levs[j]};if(cur.ang==hov.ang)continue;$img=$("#slc_"+cur.ang+cur.lev);if($img.length===0||!$img.is(":visible"))continue;img={wid:$img.width(),hei:$img.height(),top:$img.offset().top,lef:$img.offset().left};$line=$("#l_slc_"+cur.ang+cur.lev);if(hov.ang=="z"||hov.ang=="y"&&cur.ang=="z"){lev=phpvar.lv2r[0][cur.ang][hov.lev];lev=Math.round(img.hei*(this.flg_yflip?1-lev:lev));ani1={opacity:1, top:img.top+lev+1,left:img.lef+2,width:img.wid-2,height:0}}else{lev=Math.round(img.wid*phpvar.lv2r[1][cur.ang][hov.lev]);ani1={opacity:1,top:img.top+2,left:img.lef+lev+1,width:0,height:img.hei-2}}ani2={top:img.top+2,left:img.lef+2,width:img.wid-2,height:img.hei-2};if(this.line_reset)$line.stop(1,1).css(ani2);if(hov.lev=="s"||hov.lev=="_")$line.stop(1,1).animate(ani1,10).animate(ani2,800).animate(ani1,10).fadeTo(2E3,0.6);else $line.stop(1,1).show().animate(ani1,"fast").fadeTo(2E3,0.6)}this.line_reset= false},hov_out:function(s){this.$lines.stop(1,1).fadeOut(s==undefined?2E3:s)},$sld_size:$("#sld_size"),sldsize:function(){_timer.do_after_busy(function(){this.size(this.$sld_size.val())}.bind(this),"sldsize",200)},size:function(size,obj){this.line_reset=true;this.sizing=true;this.hov_out(100);this.$imgs.each(function(){var o=$(this),w=o.width,h=o.height,src=o.attr("src"),sizeto=w>h?{width:"auto",height:size}:{width:size,height:"auto"},src=size==100?src.replace("png","jpg"):src.replace("jpg","png"); o.stop(0,0).animate(sizeto,"medium",function(){_slcimg.sizing=false}).attr("src",src)});this.$resizebtns.prop("disabled",false);obj&&$(obj).prop("disabled",true);$("#t_Map").css({position:"relative",zIndex:size>100?200:0});if(size>100)this.$xbtn.show("medium");else{this.$xbtn.hide("medium").attr("onclick","_slcimg.hide(this)").text("X");this.$td.show("medium")}},hide:function(o,flg){var o=$(o),p=o.parent("th");this.line_reset=true;o.attr("onclick","_slcimg.show(this)").text(" + ");p.children("p").hide("medium"); p.nextAll("td").hide("medium")},show:function(o){var o=$(o),p=o.parent("th");this.line_reset=true;o.attr("onclick","_slcimg.hide(this)").text("X");p.children("p").show("medium");p.nextAll("td").show("medium")},$sld_brgt:$("#sld_brgt"),$sld_cont:$("#sld_cont"),$chkb_invt:$("#chkb_invt"),filter:function(){_timer.do_after_busy(function(){this.$imgs.css("filter","brightness("+this.$sld_brgt.val()+"%) "+"contrast("+this.$sld_cont.val()+"%) "+"invert("+(this.$chkb_invt.prop("checked")?100:0)+"%)")}.bind(this), "sldfilter",50)},flg_yflip:false,$chkb_yflip:$("#chkb_yflip"),yflip:function(){this.flg_yflip=this.$chkb_yflip.prop("checked");this.$imgs.css("transform","scaleY("+(this.flg_yflip?"-":"")+"1)")},reset:function(){this.$sld_brgt.val(100);this.$sld_cont.val(100);this.$sld_size.val(100);this.$chkb_invt.prop("checked",false);this.$chkb_yflip.prop("checked",false);this.sldsize();this.filter()}}; function _get_simlist(mode,id,obj){var $o=$(obj);if($o.html())return;$o.load(mode=="omokage"?"ajax.php":"fh-search.php?ajax=small",{id:id,type:mode=="omokage"?"":mode,mode:mode=="omokage"?"omokage":null},function(){$(this).prev().hide()})} var _qvw={seqsel:function(odom){var seq,$o=$(odom);if(window.getSelection)seq=window.getSelection().toString();else if(document.selection)seq=document.selection.createRange().text;seq=seq.replace(/[^A-Za-z]/g,"").toUpperCase();if(seq.length==0)return;_vw.open(phpvar.entinfo.did,{obj:$o,cmd:{"molmil":{cmd:"focus_seq",param:{seq:seq,aid:$o.data("aid")}}}})}};function _jmolq(que){_pjmol.que("jmol-main",que)} function _btn_deco(mode,obj){if(mode=="select")$(".select_btn").removeClass("act").removeClass("failed");else if(mode=="asb")$(".asb_btn").removeClass("act");obj&&$(obj).addClass("act")}function _datareloaded(){_btn_deco("select");_btn_deco("asb")}function _selected_count(num){if(num=="0")$(".select_btn.act").addClass("failed")}var _uicom={menu:function(o){_uicom.ex($(o).children("option:selected").data())},btn:function(o){_uicom.ex($(o).data())},ex:function(d){d.jmolc&&_jmolq(d.jmolc);d.js&&eval(d.js)}}; var _vwcmd={quality:function(trg_obj){var f=$(trg_obj).prop("checked");_jmolq(f?"hq":"lq");_cookie("jmol_hq",f?1:0)},blackbg:function(trg_obj){_jmolq($(trg_obj).prop("checked")?"bgblack":"bgwhite")},reset_view:function(){$(".menu_view").val("d");$(".chk_view").prop("checked",false);_jmolq("bgwhite");_jmolq("lq");_jmolq("boundbox off; stereo off; reset;")}}; </script>

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