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KEGG PATHWAY: Nitrogen metabolism - Reference pathway
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} //--> </script> </head> <body> <!-- header logo start --> <h1 class="page-title"> <a href="/kegg/pathway.html"><img alt="KEGG" border="0" src="/Fig/bget/kegg3.gif" /></a> Nitrogen metabolism - Reference pathway </h1> <!-- header logo end --> <!-- page navigation start --> <div class="nav"> [ <a href="/brite/query=00910&htext=br08901.keg&option=-a&node_proc=br08901_org&proc_enabled=map&panel=collapse" id="navPathwayMenu">Pathway menu</a> | <a href="/brite/htext=br08611&zoomout=E&brel=off&hier=10&pruning=join_brite&func=org2pathway-s-lp2~_3+00910" id="navOrganismMenu">Organism menu</a> | <a href="/entry/pathway+map00910" id="navPathwayEntry">Pathway entry</a> | <a id="descLink" href="#description">Show description</a> | <a id="downloadMenu" href="#">Download</a> | <a href="javascript:void(window.open('/kegg/document/help_pathway.html','KEGG_Help','width=720,height=640'))">Help</a> ] <div id="description" class="hidden"> The biological process of the nitrogen cycle is a complex interplay among many microorganisms catalyzing different reactions, where nitrogen is found in various oxidation states ranging from +5 in nitrate to -3 in ammonia. The core nitrogen cycle involves four reduction pathways and two oxidation pathways. Nitrogen fixation [MD:<a href="/module/M00175">M00175</a>] is the process of reducing atmospheric molecular nitrogen to ammonia, a biologically useful reduced form incorporated into amino acids and other vital compounds. The ability of fixing atmospheric nitrogen by the nitrogenase enzyme complex is present in restricted prokaryotes (diazotrophs). The other reduction pathways are assimilatory nitrate reduction [MD:<a href="/module/M00531">M00531</a>] and dissimilatory nitrate reduction [MD:<a href="/module/M00530">M00530</a>] both for conversion to ammonia, and denitrification [MD:<a href="/module/M00529">M00529</a>]. Denitrification is a respiration in which nitrate or nitrite is reduced as a terminal electron acceptor under low oxygen or anoxic conditions, producing gaseous nitrogen compounds (N2, NO and N2O) to the atmosphere. The two oxidation pathways are nitrification [MD:<a href="/module/M00528">M00528</a>] and anaerobic ammonium oxidation (anammox) [MD:<a href="/module/M00973">M00973</a>]. Nitrification is the oxidation of ammonia (NH3) with oxygen into nitrite followed by the oxidation of nitrite into nitrate. The first step is performed by ammonia-oxidizing microorganisms (e.g., Nitrosomonas and Nitrosococcus) and the second step by nitrite-oxidizing microorganisms (e.g., Nitrobacter). Anammox is a biochemical process of oxidizing ammonium (NH4+) into dinitrogen gas (N2) using nitrite as an electron acceptor. It occurs in the anammoxosome, a membrane bound compartment inside the cytoplasm, of anammox bacteria (e.g., Planctomycetes). </div> <!-- organism list start --> <form name="selmenu" method="get"> <input type="button" id="changePathwayTypeButton" value="Change pathway type"> <input type="text" class="hidden" name="mapno" value="00910" /> <input type="text" class="hidden" id="scale" name="scale" value="1" /> <input type="text" class="hidden" id="displayNoColoringImage" name="nocolor" value="0" /> <input type="text" class="hidden" id="displayDescription" name="show_description" value="hide" /> <input type="text" class="hidden" id="displayControlPanel" name="show_module_list" value="show" /> <input type="text" class="hidden" id="clickableMode" name="clickable_mode" value="" /> <input type="text" class="hidden" name="module" value="" /> </form> <!-- organism list end --> </div> <!-- page navigation end --> <!-- pathway image start --> <div class="image-block" style="position:static;"> <img 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<!-- pathway image end --> <!-- control panel start --> <div id="controlPanel"> <div class="controller"> <div class="feature option"> <h5>Option</h5> <div> <div class="row scale"> <span class="title">Scale:</span> <span class="content"> <input type="range" min="0.1" max="1" step="0.05" value="1"> <span class="label">100%</span> </span> </div> <div class="row image-resolution hidden"> <span class="title">Image resolution:</span> <span class="content"> <label> <input type="checkbox" value="high"> High </label> </span> </div> </div> </div> <div class="feature search"> <h5>Search</h5> <div> <div class="row query"> <form> <input type="text" name="query" style="width:130px;" autocomplete="off" value=""> <input type="submit" value="Go"> <span class="ui-icon button ui-icon-close clear-query hidden"></span> </form> </div> <div class="row result"> </div> </div> </div> <div class="feature search-pathway"> <h5>ID search <span class="ui-icon ui-icon-plus"></span> </h5> <div> <form> <div class="row" style="display:grid; grid-template-columns:135px 1fr; column-gap:5px;"> <div> <textarea class="query" rows="2" style="width:130px; resize:none;">C00887</textarea> </div> <div> <input type="submit" class="submit" value="Go"> <span class="ui-icon button ui-icon-close clear-query hidden"></span> </div> </div> </form> <div class="row personal hidden"> <ul class="mappers"></ul> </div> </div> </div> <div class="feature color-pathway"> <h5>Color <span class="ui-icon ui-icon-plus"></span> </h5> <div> <div class="row personal hidden"> <ul class="mappers"></ul> </div> </div> </div> <div class="feature color-module"> <h5>Module</h5> <div> <div class="row"> <ul class="tree module-tree"> <li class="classification class-A "> <span> <input type="checkbox" > Pathway modules </span> <ul> <li class="classification class-B "> <span> <input type="checkbox" > Energy metabolism </span> <ul> <li class="classification class-C "> <span> <input type="checkbox" > Nitrogen metabolism </span> <ul> <li class="entry class-D module complete"> <span> <input type="checkbox" > <a href="/module/M00175" data-entry="M00175" target="_blank" >M00175</a> Nitrogen fixation </span> </li> <li class="entry class-D module complete"> <span> <input type="checkbox" > <a href="/module/M00531" data-entry="M00531" target="_blank" >M00531</a> Assimilatory nitrate reduction </span> </li> <li class="entry class-D module complete"> <span> <input type="checkbox" > <a href="/module/M00530" data-entry="M00530" target="_blank" >M00530</a> Dissimilatory nitrate reduction </span> </li> <li class="entry class-D module complete"> <span> <input type="checkbox" > <a href="/module/M00529" data-entry="M00529" target="_blank" >M00529</a> Denitrification </span> </li> <li class="entry class-D module complete"> <span> <input type="checkbox" > <a href="/module/M00528" data-entry="M00528" target="_blank" >M00528</a> Nitrification </span> </li> <li class="entry class-D module complete"> <span> <input type="checkbox" > <a href="/module/M00804" data-entry="M00804" target="_blank" >M00804</a> Complete nitrification, comammox </span> </li> <li class="entry class-D module complete"> <span> <input type="checkbox" > <a href="/module/M00973" data-entry="M00973" target="_blank" >M00973</a> Anammox </span> </li> </ul> </li> </ul> </li> </ul> </li> </ul> </div> </div> </div> </div> <button class="close"> <img src="/Fig/left_triangle_12x12.png"> </button> <button class="open"> <img src="/Fig/right_triangle_12x12.png"> </button> </div> <!-- control panel end --> <form id="downloadForm" action="/kegg-bin/download" method="post"> <input type="hidden" name="name" value="map00910.png" /> <input type="hidden" name="content" /> <input type="hidden" name="dpi" /> <input type="hidden" name="decode" value="base64" /> </form> <div id="waiting-circle"> <img src="/Fig/waiting-circle-small.gif"> </div> <!-- pathway image url start --> <form class="imageset" data-name=""> <input type="hidden" name="image_normal" value="/kegg/pathway/map/map00910.png 1x" data-src="/kegg/pathway/map/map00910.png" data-situation="1x"> <input type="hidden" name="image_grayscale" value="/kegg/pathway/map/map00910.png 1x" data-src="/kegg/pathway/map/map00910.png" data-situation="1x"> <input type="hidden" name="image_grayscale" value="/kegg/pathway/map/map00910@2x.png 2x" data-src="/kegg/pathway/map/map00910@2x.png" data-situation="2x"> </form> <!-- pathway image url end --> <div id="download-menu" style="display:none;"> <div><a class="downloadImageNx" data-scale="1" href="#downloadImage1x">Image (png) file 1x</a></div> <div><a class="downloadImageNx" data-scale="2" href="#downloadImage2x">Image (png) file 2x</a></div> </div> </body> </html>