NIES collection MICROBIAL CULTURE COLLECTION | National Institute for Environmental Studies

<!DOCTYPE html> <html lang="ja"> <head> <title>NIES collection MICROBIAL CULTURE COLLECTION | National Institute for Environmental Studies</title> <meta charset="utf-8"> <meta name="viewport" content="width=1024, user-scalable=1"> <meta name="format-detection" content="telephone=no"> <meta property="og:site_name" content="NIES collection CULTURE COLLECTION | National Institute for Environmental Studies"> <meta property="og:image" content="./OGP_en.png"> <meta property="og:type" content="website"> <meta property="og:locale" content="ja_JP"> <meta name="description" content=""> <meta name="keywords" content=""> <link rel="icon" href="favicon.ico"> <link rel="apple-touch-icon" href="icon.png"> <script src="js/jquery-3.7.1.min.js"></script>  <script src="_common/js/jquery.easing.1.4.min.js"></script> <script src="_common/js/common.js"></script> <script src="_common/js/analytics.js"></script> <script src="js/jquery.pagetop.js"></script>  <script src="js/jquery.strains.accordion.js"></script> <link rel="stylesheet" href="_common/css/reset.css"> <link rel="stylesheet" href="_common/css/font.css"> <link rel="stylesheet" href="_common/css/layout.css"> <link rel="stylesheet" href="_common/css/style.css"> <script type="text/javascript">  var TRANSLATED_FILE_PATH = 'topics-j.html';  $(function(){ $("meta").load("_common/_commonEn.jsp"); }); </script> </head> <body id="page" class="english">  <div id="header_wrapper"></div>   <div id="contents_wrapper">  <div id="topic_path"> <ul class="floatclear" itemscope itemtype="http://data-vocabulary.org/Breadcrumb"> <li><a href="./" itemprop="url"><span itemprop="title">HOME</span></a></li> <li>Genome information</li> </ul> </div>   <section id="page_contents">  <div id="page_header"> <div id="page_header_wrapper" class="floatclear"> <h1 class="center">Genome information</h1> </div> </div>   <nav id="anchor_link"> <ul class="floatclear"> <li><a href="#section01">Genome information</a></li> </ul> </nav>  <section id="section01"> <h1>1. Genome information</h1> <ul class="list_disc"> <li> <b><i>Acaryochloris tomasi</i></b>   <a href="strainList.do?strainId=3838" target="_blank"><b>NIES-3840</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/PQWO00000000" target="_blank">PQWO00000000</a>) <br/> <a href="https://doi.org/10.1038/s41598-018-27542-7" target="_blank">Partensky, F., Six, C., Ratin, M., Garczarek, L., Vaulot, D., Probert, I., Calteau, A., Gourvil, P., Marie, D., Grébert, T., Bouchier, C., Le Panse, S., Gachenot, M., Rodríguez, F., Garrido, J. L. 2018 A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle. Sci Rep, 8, 9142 (article ID). </a> </div> </li> <li> <b><i>Annamina dubia</i></b>   <a href="strainList.do?strainId=4381" target="_blank"><b>NIES-4383</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/AP025630" target="_blank">AP025630</a>) <br/> <a href="https://doi.org/10.7150/jgen.87678" target="_blank">Tuji, A. et al. 2024. Complete genome sequence of <i>Annamia dubia</i>, filamentous colony-making Chroococcales with the analysis of FraC gene influencing filament integrity.</a> </div> </li> <li> <b><i>Astrephomene gubernaculifera</i></b>   <a href="strainList.do?strainId=4015" target="_blank"><b>NIES-4017</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BMAR00000000" target="_blank">BMAR00000000</a>) <br/> <a href="https://doi.org/10.1038/s41598-021-01521-x" target="_blank">Yamashita, S. et al. 2021 Genome sequencing of the multicellular alga <i>Astrephomene provides</i> insights into convergent evolution of germ-soma differentiation. Sci Rep, 11, 22231 (article ID). </a> </div> </li> <li> <b><i>Anabaena cylindrica</i></b>   <a href="strainList.do?strainId=7" target="_blank"><b>NIES-19</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018166" target="_blank">Whole-genome</a> </li> <li> <b><i>Anabaena variabilis</i></b>   <a href="strainList.do?strainId=17" target="_blank"><b>NIES-23</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018216" target="_blank">Whole-genome</a> </li> <li> <b><i>Anabaenopsis circularis</i></b>   <a href="strainList.do?strainId=18" target="_blank"><b>NIES-21</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018174" target="_blank">Whole-genome</a> </li> <li> <b><i>Aphanizomenon flos-aquae</i></b>   <a href="strainList.do?strainId=19" target="_blank"><b>NIES-81</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/AZYY00000000" target="_blank">AZYY00000000</a>) <br/> <a href="https://doi.org/10.1128/genomeA.00044-14" target="_blank">Cao, H. et al. 2014. Draft genome sequence of the toxic bloom-forming cyanobacterium <i>Aphanizomenon ﬂos-aquae</i> NIES-81. GenomeA, 2, e00044-14.</a> </div> </li> <li> <b><i>Aulosira laxa</i></b>   <a href="strainList.do?strainId=25" target="_blank"><b>NIES-50</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018307" target="_blank">Whole-genome</a> </li> <li> <b><i>Arthrospira platensis</i></b>   <a href="strainList.do?strainId=37" target="_blank"><b>NIES-39</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> <a href="http://www.bio.nite.go.jp/dogan/project/view/SP2" target="_blank">NITE DOGAN</a> <br/> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/AP011615" target="_blank">AP011615</a>) <br/><br/> <a href="https://doi.org/10.1093/dnares/dsq004" target="_blank">Fujisawa, T. et al. 2010. Genomic structure of an economically important cyanobacterium, <i>Arthrospira</i>(<i>Spirulina</i>) <i>platensis</i> NIES-39. DNA Res., 17:85-103.</a> </div> </li> <li> <b><i>Calothrix brevissima</i></b>   <a href="strainList.do?strainId=27" target="_blank"><b>NIES-22</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018207" target="_blank">Whole-genome</a> </li> <li> <b><i>Calothrix parasitica</i></b>   <a href="strainList.do?strainId=29" target="_blank"><b>NIES-267</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018227" target="_blank">Whole-genome</a> </li> <li> <b><i>Calothrix</i> sp.</b>   <a href="strainList.do?strainId=2490" target="_blank"><b>NIES-2098</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018172" target="_blank">Whole-genome</a> </li> <li> <b><i>Calothrix</i> sp.</b>   <a href="strainList.do?strainId=2492" target="_blank"><b>NIES-2100</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018178" target="_blank">Whole-genome</a> </li> <li> <b><i>Calothrix</i> sp.</b>   <a href="strainList.do?strainId=2493" target="_blank"><b>NIES-2101</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MRCD00000000" target="_blank">MRCD00000000</a>) <br/> <a href="https://doi.org/10.1128/genomeA.01676-16" target="_blank">Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).</a> </div> </li> <li> <b><i>Calothrix</i> sp.</b>   <a href="strainList.do?strainId=3972" target="_blank"><b>NIES-3974</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018254" target="_blank">Whole-genome</a> </li> <li> <b><i>Calothrix</i> sp.</b>   <a href="strainList.do?strainId=4099" target="_blank"><b>NIES-4101</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018280" target="_blank">Whole-genome</a> </li> <li> <b><i>Calothrix</i> sp.</b>   <a href="strainList.do?strainId=4103" target="_blank"><b>NIES-4105</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018290" target="_blank">Whole-genome</a> </li> <li> <b><i>Carteria cerasiformis</i></b>   <a href="strainList.do?strainId=549" target="_blank"><b>NIES-425</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/KT625415" target="_blank">KT625415</a>) <br/><br/> <a href="https://doi.org/10.1186/s12862-015-0544-5" target="_blank">Lemieux, C., Vincent, A. T., Labarre, A., Otis, C., Turmel M. 2015 Chloroplast phylogenomic analysis of chlorophyte green algae identifies a novel lineage sister to the Sphaeropleales (Chlorophyceae). BMC Evol. Biol., 15, 264 (article ID).</a> </div> </li> <li> <b><i>Chlamydomonas applanata</i></b>   <a href="strainList.do?strainId=2594" target="_blank"><b>NIES-2202</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BDCZ00000000" target="_blank">BDCZ00000000</a>) <br/><br/> <a href="https://doi.org/10.1128/genomeA.01070-16 " target="_blank">Hirashima, T., Tajima, N., Sato, N. 2016 Draft genome sequences of four species of Chlamydomonas containing phosphatidylcholine. GenomeA, 4, e01070-16 (article ID).</a> </div> </li> <li> <b><i>Chlamydomonas asymmetrica</i></b>   <a href="strainList.do?strainId=2599" target="_blank"><b>NIES-2207</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BDDA00000000" target="_blank">BDDA00000000</a>) <br/><br/> <a href="https://doi.org/10.1128/genomeA.01070-16 " target="_blank">Hirashima, T., Tajima, N., Sato, N. 2016 Draft genome sequences of four species of Chlamydomonas containing phosphatidylcholine. GenomeA, 4, e01070-16 (article ID).</a> </div> </li> <li> <b><i>Chlamydomonas debaryana</i></b>   <a href="strainList.do?strainId=2604" target="_blank"><b>NIES-2212</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BDDB00000000" target="_blank">BDDB00000000</a>) <br/><br/> <a href="https://doi.org/10.1128/genomeA.01070-16 " target="_blank">Hirashima, T., Tajima, N., Sato, N. 2016 Draft genome sequences of four species of Chlamydomonas containing phosphatidylcholine. GenomeA, 4, e01070-16 (article ID).</a> </div> </li> <li> <b><i>Chlamydomonas eustigma</i></b>   <a href="strainList.do?strainId=2809" target="_blank"><b>NIES-2499</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/BEGY00000000" target="_blank">Whole-genome</a> </li> <li> <b><i>Chlamydomonas reinhardtii</i></b>   <a href="strainList.do?strainId=2627" target="_blank"><b>NIES-2235</b></a>   <a class="showOrHide">EST information</a> <div class="accordionContent" style="display:none;"> This green, unicellular flagellate is famous as an experimental material for genetics and photosynthesis. This strain was transferred to the NIES-Collection from the IAM Collection, in which it was known as C-9, which has been widely used and deposited as a descendant of the original pair derived from a single zygospore isolated in Massachusetts in 1945, through Professors Sager and then Tsubo to the IAM Collection. Kazusa DNA Research Institute and Kyoto University have conducted EST analyses of the strain. <br/> <a href="http://est.kazusa.or.jp/en/plant/chlamy/EST/index.html" target="_blank"> <i>Chlamydomonas reinhardtii</i>  EST index </a> <br/> <a href="http://chlamy.pmb.lif.kyoto-u.ac.jp/chlamybase" target="_blank">ChlamyBase</a> </div> </li> <li> <b><i>Chlamydomonas sphaeroides</i></b>   <a href="strainList.do?strainId=2634" target="_blank"><b>NIES-2242</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BDDC00000000" target="_blank">BDDC00000000</a>) <br/><br/> <a href="https://doi.org/10.1128/genomeA.01070-16 " target="_blank">Hirashima, T., Tajima, N., Sato, N. 2016 Draft genome sequences of four species of Chlamydomonas containing phosphatidylcholine. GenomeA, 4, e01070-16 (article ID).</a> </div> </li> <li> <b><i>Chlorella vulgaris</i></b>   <a href="strainList.do?strainId=2562" target="_blank"><b>NIES-2170</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Plastid DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/AB001684" target="_blank">AB001684</a>) <br/><br/> <a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=Complete+nucleotide+sequence+of+the+chloroplast+genome+from+the+green+alga+Chlorella+vulgaris%3A+the+existence+of+genes+possibly+involved+in+chloroplast+division" target="_blank">Wakasugi,T. et al. 1997. Complete nucleotide sequence of the chloroplast genome from the green alga <i>Chlorella vulgaris</i>: the existence of genes possibly involved in chloroplast division. Proc. Natl. Acad. Sci. U.S.A. 94, 5967-5972.</a> </div> </li> <li> <b><i>Chloropicon roscoffensis</i></b>   <a href="strainList.do?strainId=3148" target="_blank"><b>NIES-2755</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MK086006" target="_blank">MK086006</a>) <br/> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MK085992" target="_blank">MK085992</a>) <br/> <a href="https://doi.org/10.1093/gbe/evz074" target="_blank">Turmel, M., Lopes Dos Santos, A., Otis, C., Sergerie, R., Lemieux, C. 2019 Tracing the evolution of the plastome and mitogenome in the Chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biol. Evol., 11, 1275–1292.</a> </div> </li> <li> <b><i>Chloroparvula japonica</i></b>   <a href="strainList.do?strainId=3151" target="_blank"><b>NIES-2758</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MK086007" target="_blank">MK086007</a>) <br/> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MK085993" target="_blank">MK085993</a>) <br/> <a href="https://doi.org/10.1093/gbe/evz074" target="_blank">Turmel, M., Lopes Dos Santos, A., Otis, C., Sergerie, R., Lemieux, C. 2019 Tracing the evolution of the plastome and mitogenome in the Chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biol. Evol., 11, 1275–1292.</a> </div> </li> <li> <b><i>Chloroparvula pacifica</i></b>   <a href="strainList.do?strainId=3667" target="_blank"><b>NIES-3669</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MK086011" target="_blank">MK086011</a>) <br/> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MK085995" target="_blank">MK085995</a>) <br/> <a href="https://doi.org/10.1093/gbe/evz074" target="_blank">Turmel, M., Lopes Dos Santos, A., Otis, C., Sergerie, R., Lemieux, C. 2019 Tracing the evolution of the plastome and mitogenome in the Chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biol. Evol., 11, 1275–1292.</a> </div> </li> <li> <b><i>Chondrocystis</i> sp.</b>   <a href="strainList.do?strainId=4100" target="_blank"><b>NIES-4102</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018281" target="_blank">Whole-genome</a> </li> <li> <b><i>Chroogloeocystis siderophila</i></b>   <a href="strainList.do?strainId=1504" target="_blank"><b>NIES-1031</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MRCC00000000" target="_blank">MRCC00000000</a>) <br/> <a href="https://doi.org/10.1128/genomeA.01676-16" target="_blank">Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).</a> </div> </li> <li> <b><i>Chroomonas collegionis</i></b>   <a href="strainList.do?strainId=864" target="_blank"><b>NIES-703</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648955" target="_blank">Plastid genome</a> </li> <li> <b><i>Chroomonas borealis</i></b>   <a href="strainList.do?strainId=188" target="_blank"><b>NIES-276</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648950" target="_blank">Plastid genome</a> </li> <li> <b><i>Chroomonas debatzensis</i></b>   <a href="strainList.do?strainId=653" target="_blank"><b>NIES-2331</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648962" target="_blank">Plastid genome</a> </li> <li> <b><i>Chrysochromulina</i> sp.</b>   <a href="strainList.do?strainId=1607" target="_blank"><b>NIES-1333</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondrial DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/AB930144" target="_blank">AB930144</a>) <br/><br/> <a href="https://doi.org/10.4161/mge.29384" target="_blank">Nishimura, Y., Kamikawa, R., Hashimoto, T., Inagaki, Y. 2014. An intronic open reading frame was released from one of group II introns in the mitochondrial genome of the haptophyte <i>Chrysochromulina</i> sp. NIES-1333. Mobile Genetic Elements, 4, e29384 (article ID). </a> </div> </li> <li> <b><i>Chrysophaeum taylorii</i></b>   <a href="strainList.do?strainId=1796" target="_blank"><b>NIES-1699</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/JAQMWT000000000.1" target="_blank">JAQMWT000000000</a>) <br/> <a href="https://doi.org/10.1038/s41598-023-38042-8" target="_blank">Davison, J. R. et al. 2023 The genome of antibiotic-producing colonies of the Pelagophyte alga <i>Chrysophaeum taylorii</i> reveals a diverse and non-canonical capacity for secondary metabolism. Sci Rep, 13, 11944 (article ID).</a> </div> </li> <li> <b><i>Cladocopium</i> sp.</b>   <a href="strainList.do?strainId=4075" target="_blank"><b>NIES-4077</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/1408267393" target="_blank">BGPT00000000</a>) <br/> <a href="https://doi.org/10.1186/s12864-018-4857-9" target="_blank">Shoguchi, E., Beedessee, G., Tada, I., Hisata, K., Kawashima, T., Takeuchi, T., Arakaki, N., Fujie, M., Koyanagi, R., Roy, M. C., Kawachi, M., Hidaka, M., Satoh, N., Shinzato, C. 2018 Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. BMC Genomics, 19, 458 (article ID).</a> </div> </li> <li> <b><i>Closterium peracerosum-strigosum-littorale</i> complex</b>   <a href="strainList.do?strainId=243" target="_blank"><b>NIES-67</b></a>   <a class="showOrHide">Whole-genome, Organella Genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BQMB00000000" target="_blank">BQMB00000000</a>) <br/> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/LC704716" target="_blank">LC704716</a>) <br/> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/LC704717" target="_blank">LC704717</a>) <br/><br/> <a href="https://doi.org/10.1111/nph.17763" target="_blank">Kawai, J., Kanazawa, M., Suzuki, R., Kikuchi, N., Hayakawa, Y., Sekimoto, H. 2022. Highly efficient transformation of the model zygnematophycean alga <i>Closterium peracerosum-strigosum-littorale</i> complex by square-pulse electroporation. New Phytol., 233, 569-578.</a> </div> </li> <li> <b><i>Closterium peracerosum-strigosum-littorale</i> complex</b>   <a href="strainList.do?strainId=244" target="_blank"><b>NIES-68</b></a>   <a class="showOrHide">Whole-genome, Organella Genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BQMA00000000" target="_blank">BQMA00000000</a>) <br/> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/LC704714" target="_blank">LC704714</a>) <br/> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/LC704715" target="_blank">LC704715</a>) <br/><br/> <a href="https://doi.org/10.1111/nph.17763" target="_blank">Kawai, J., Kanazawa, M., Suzuki, R., Kikuchi, N., Hayakawa, Y., Sekimoto, H. 2022. Highly efficient transformation of the model zygnematophycean alga <i>Closterium peracerosum-strigosum-littorale</i> complex by square-pulse electroporation. New Phytol., 233, 569-578.</a> </div> </li> <li> <b><i>Coccomyxa subellipsoidea</i></b>   <a href="strainList.do?strainId=2558" target="_blank"><b>NIES-2166</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> <a href="http://www.ncbi.nlm.nih.gov/bioproject/32657" target="_blank"> <i>Coccomyxa subellipsoidea</i> C-169 Genome sequencing project </a> </div> </li> <li> <b><i>Cryptomonas curvata</i></b>   <a href="strainList.do?strainId=198" target="_blank"><b>NIES-281</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648951" target="_blank">Plastid genome</a> </li> <li> <b><i>Cryptomonas irregularis</i></b>   <a href="strainList.do?strainId=859" target="_blank"><b>NIES-698</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648954" target="_blank">Plastid genome</a> </li> <li> <b><i>Cryptomonas paramaecium</i></b>   <a href="strainList.do?strainId=878" target="_blank"><b>NIES-715</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648956" target="_blank">Plastid genome</a> </li> <li> <b><i>Cryptomonas tetrapyrenoidosa</i></b>   <a href="strainList.do?strainId=185" target="_blank"><b>NIES-348</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648953" target="_blank">Plastid genome</a> </li> <li> <b><i>Cryptomonas</i> sp.</b>   <a href="strainList.do?strainId=190" target="_blank"><b>NIES-345</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648952" target="_blank">Plastid genome</a> </li> <li> <b><i>Cryptomonas</i> sp.</b>   <a href="strainList.do?strainId=1601" target="_blank"><b>NIES-1327</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648959" target="_blank">Plastid genome</a> </li> <li> <b><i>Cryptomonas</i> sp.</b>   <a href="strainList.do?strainId=3950" target="_blank"><b>NIES-3952</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648965" target="_blank">Plastid genome</a> </li> <li> <b><i>Cyanidioschyzon merolae</i></b>   <a href="strainList.do?strainId=3374" target="_blank"><b>NIES-3377</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> <i>C. merolae</i> is a tiny unicellular red alga isolated from high temperature (45-50°C) and acidic (pH=1.0-3.0) environment, with simple organization containing each one organelle such as nucleus, mitochondrion, chloroplast, microbody and Golgi apparatus. Whole genome analyses (including nuclear, mitochondrioal and chloroplast genomes) were completed until 2004 as the strain 10D by the research team of Prof. Kuroiwa. <br/> The genome size of <i>C. merolae</i> is ca. 16 Mbp. The genome includes 20 chromosomes and comprises 4,775 protein-encoding proteins. The genome lacks introns in almost all genes and contains only three copies of ribosomal DNA units. <br/> <a href="http://merolae.biol.s.u-tokyo.ac.jp/" target="_blank">Cyanidioschyzon merolae Genome Project</a> </div> </li> <li> <b><i>Cyanobium</i> sp.</b>   <a href="strainList.do?strainId=1184" target="_blank"><b>NIES-981</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/1034210027" target="_blank">LT578417</a>) <br/> <a href="https://doi.org/10.1128/genomeA.00736-16" target="_blank">Yamaguchi, H., Shimura, Y., Suzuki, S., Yamagishi, T., Tatarazako, N., Kawachi, M. 2016 Complete genome sequence of Cyanobium sp. NIES-981, a marine strain potentially useful for ecotoxicological bioassays. GenomeA, 4, e00736-16 (article ID).</a> </div> </li> <li> <b><i>Cyanophora kugrensii</i></b>   <a href="strainList.do?strainId=853" target="_blank"><b>NIES-763</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/KM198930" target="_blank">KM198930</a>) <br/> <a href="https://doi.org/10.1128/genomeA.00736-16" target="_blank">Smith, D. R. et al. 2014 Nucleotide substitution analyses of the glaucophyte <i>Cyanophora</i> suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida. Mol. Phylogenet. Evol., 79, 380-384.</a> </div> </li> <li> <b><i>Cyanophora sudae</i></b>   <a href="strainList.do?strainId=854" target="_blank"><b>NIES-764</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MT919637" target="_blank">MT919637</a>) <br/> <a href="https://doi.org/10.1111/jeu.12831" target="_blank">Russell, S. et al. 2021 High sequence divergence but limited architectural rearrangements in organelle genomes of <i>Cyanophora</i> (Glaucophyta) species. J. Eukaryot. Microbiol., 68, e12831 (article ID).</a> <br/><br/> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MG601102" target="_blank">MG601102</a>) <br/> <a href="https://doi.org/10.1016/bs.abr.2017.11.012" target="_blank">Reyes-Prieto, A. et al. 2018 Chapter Four - Comparative Plastid Genomics of Glaucophytes species. J. Eukaryot. Adv. Bot. Res. 85, 95-127.</a> </div> </li> <li> <b><i>Diphylleia rotans</i></b>   <a href="strainList.do?strainId=3762" target="_blank"><b>NIES-3764</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/AP015014" target="_blank">AP015014</a>) <br/> <a href="https://doi.org/10.1186/s12862-015-0544-5" target="_blank">Kamikawa, R., Shiratori, T., Ishida, K-I., Miyashita, H., Roger, A. J. 2016 Group II intron-mediated trans-splicing in the green-rich mitochondrial genome of an enigmatic eukaryote, Diphylleia rotans. Genome Biol. Evol., 8, 458-466.</a> </div> </li> <li> <b><i>Dolichospermum compactum</i></b>   <a href="strainList.do?strainId=979" target="_blank"><b>NIES-806</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018316" target="_blank">Whole-genome</a> </li> <li> <b><i>Dolichospermum planctonicum</i></b>   <a href="strainList.do?strainId=16" target="_blank"><b>NIES-80</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BJCF00000000" target="_blank">BJCF00000000</a>) <br/> <a href="https://doi.org/10.1128/MRA.00605-19" target="_blank">Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 Draft genome sequences of three filamentous cyanobacterial strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949. Microbiol Resour Announc., , e00605-19 (article ID).</a> </div> </li> <li> <b><i>Eudorina</i> sp.</b>   <a href="strainList.do?strainId=3982" target="_blank"><b>NIES-3984</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BDSI00000000.1" target="_blank">BDSI00000000</a>) <br/> <a href="https://doi.org/10.1038/s42003-018-0019-5" target="_blank">Hamaji, T., Kawai-Toyooka, H., Uchimura, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Miyagishima, S., Umen, J. G., Nozaki, H. 2018 Anisogamy evolved with a reduced sexdetermining region in volvocine green algae. Communications Biology, 17</a> <br/><br/> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/KY442294" target="_blank">KY442294</a>) <br/> <a href="https://doi.org/10.1093/gbe/evx060" target="_blank">Hamaji, T., Kawai-Toyooka, H., Toyoda, A., Minakuchi, Y., Suzuki, M., Fujiyama, A., Nozaki, H., Smith, D. R. 2017 Multiple independent changes in mitochondrial genome conformation in chlamydomonadalean algae. Genome Biol. Evol., 9, 993-999.</a> </div> </li> <li> <b><i>Eudorina</i> sp.</b>   <a href="strainList.do?strainId=3983" target="_blank"><b>NIES-3985</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BDSJ00000000.1" target="_blank">BDSJ00000000</a>) <br/> <a href="https://doi.org/10.1038/s42003-018-0019-5" target="_blank">Hamaji, T., Kawai-Toyooka, H., Uchimura, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Miyagishima, S., Umen, J. G., Nozaki, H. 2018 Anisogamy evolved with a reduced sexdetermining region in volvocine green algae. Communications Biology, 17</a> </div> </li> <li> <b><i>Eutreptiella gymnastica</i></b>   <a href="strainList.do?strainId=128" target="_blank"><b>NIES-381</b></a>   <a href="https://www.ncbi.nlm.nih.gov/sra/SRR1294408" target="_blank">transcriptome</a> </li> <li> <b><i>Fremyella diplosiphon</i></b>   <a href="strainList.do?strainId=2723" target="_blank"><b>NIES-3275</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018233" target="_blank">Whole-genome</a> </li> <li> <b><i>Geminocystis</i> sp.</b>   <a href="strainList.do?strainId=3706" target="_blank"><b>NIES-3708</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/AP014815" target="_blank">AP014815</a> - <a href="http://www.ncbi.nlm.nih.gov/nuccore/AP014820" target="_blank">AP014820</a>) <br/> <a href="https://doi.org/0.1128/genomeA.00357-15" target="_blank">Hirose, Y. et al. 2015. Complete genome sequence of cyanobacterium <i>Geminocystis</i> sp. strain NIES-3708, which performs type II complementary chromatic acclimation. GenomeA, 3, e00357-15.</a> </div> </li> <li> <b><i>Geminocystis</i> sp.</b>   <a href="strainList.do?strainId=3707" target="_blank"><b>NIES-3709</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/AP014821" target="_blank">AP014821</a> - <a href="http://www.ncbi.nlm.nih.gov/nuccore/AP014832" target="_blank">AP014832</a>) <br/> <a href="https://doi.org/10.1128/genomeA.00385-15" target="_blank">Hirose, Y. et al. 2015. Complete genome sequence of cyanobacterium <i>Geminocystis</i> sp. strain NIES-3709, which harbors a phycoerythrin-rich phycobilisome. GenomeA, 3, e00385-15.</a> </div> </li> <li> <b><i>Glaucocystis nostochinearum</i></b>   <a href="strainList.do?strainId=2533" target="_blank"><b>NIES-2141</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondrial DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/HQ908425" target="_blank">HQ908425</a>) </div> </li> <li> <b><i>Gonium pectorale</i></b>   <a href="strainList.do?strainId=3249" target="_blank"><b>NIES-2863</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondorial DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/AP012493" target="_blank">AP012493</a>>) <br/> Plastid DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/AP012494" target="_blank">AP012494</a>) <br/><br/> <a href="https://doi.org/10.1371/journal.pone.0057177" target="_blank">Hamaji, T. et al. 2013. Mitochondrial and Plastid Genomes of the Colonial Green Alga, <i>Gonium pectorale</i> Give Insights into the Origins of Organelle DNA Architecture within the Volvocales. PLoS ONE, 8: e57177.</a> </div> </li> <li> <b><i>Haematococcus lacustris</i></b>   <a href="strainList.do?strainId=142" target="_blank"><b>NIES-144 </b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BLLF00000000" target="_blank">BLLF00000000</a>) <br/> <a href="https://doi.org/10.1128/MRA.00128-20" target="_blank">Morimoto, D., Yoshida, T., Sawayama, S. 2020 Draft genome sequence of the astaxanthin-producing microalga <i>Haematococcus lacustris</i> Strain NIES-144. Microbiol Resour Announc., 9, e00128-20 (article ID). </a> </div> </li> <li> <b><i>Hafniomonas laevis</i></b>   <a href="strainList.do?strainId=143" target="_blank"><b>NIES-257</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/KT625415" target="_blank">KT625415</a>) <br/><br/> <a href="https://doi.org/10.1186/s12862-015-0544-5" target="_blank">Lemieux, C., Vincent, A. T., Labarre, A., Otis, C., Turmel M. 2015 Chloroplast phylogenomic analysis of chlorophyte green algae identifies a novel lineage sister to the Sphaeropleales (Chlorophyceae). BMC Evol. Biol., 15, 264 (article ID).</a> </div> </li> <li> <b><i>Hemiselmis andersenii</i></b>   <a href="strainList.do?strainId=3178" target="_blank"><b>NIES-2716</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648964" target="_blank">Plastid genome</a> </li> <li> <b><i>Heterosigma akashiwo</i></b>   <a href="strainList.do?strainId=412" target="_blank"><b>NIES-293</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Plastid DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/EU168190" target="_blank">EU168190</a>) <br/><br/> <a href="https://doi.org/10.1186/1471-2164-9-211" target="_blank">Cattolico, R. A., Jacobs, M. A., Zhou, Y., Chang, J., Duplessis, M., Lybrand, T., McKay, J., Ong, H. C., Sims, E., Rocap, G. 2008. Chloroplast genome sequencing analysis of <i>Heterosigma akashiwo</i> CCAM452 (West Atlantic) and NIES293 (West Pacific) strains. BMC Genomics, 9, 211-230.</a> </div> </li> <li> <b><i>Hydrococcus rivularis</i></b>   <a href="strainList.do?strainId=749" target="_blank"><b>NIES-593</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MRCB00000000" target="_blank">MRCB00000000</a>) <br/> <a href="https://doi.org/10.1128/genomeA.01676-16" target="_blank">Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).</a> </div> </li> <li> <b><i>Kipferlia bialata</i></b>   <a href="strainList.do?strainId=2345" target="_blank"><b>NIES-1968</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BDIP00000000" target="_blank">BDIP00000000</a>) <br/><br/> <a href="https://doi.org/10.1371/journal.pone.0194487" target="_blank">Tanifuji, G. et al. 2018. The draft genome of <i>Kipferlia bialata</i> reveals reductive genome evolution in fornicate parasites. PLoS One, 13, e0194487.</a> </div> </li> <li> <b><i>Klebsormidium flaccidum</i></b>   <a href="strainList.do?strainId=2677" target="_blank"><b>NIES-2285</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> <a href="http://www.plantmorphogenesis.bio.titech.ac.jp/~algae_genome_project/klebsormidium/index.html" target="_blank"> <i>Klebsormidium flaccidum</i> genome project </a> <br/> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/BANV00000000" target="_blank">BANV00000000</a>) <br/> Mitochondrial DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/DF238763" target="_blank">DF238763</a>) <br/> Plastid DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/DF238762" target="_blank">DF238762</a>) <br/><br/> <a href="https://doi.org/10.1038/ncomms4978" target="_blank">Hori, K. et al. 2014. <i>Klebsormidium flaccidum</i> genome reveals primary factors for plant terrestrial adaptation. Nat. Commun.</a> </div> </li> <li> <b><i>Leptolyngbya boryana</i></b>   <a href="strainList.do?strainId=2527" target="_blank"><b>NIES-2135</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018203" target="_blank">Whole-genome</a> </li> <li> <b><i>Leptolyngbya</i> sp.</b>   <a href="strainList.do?strainId=307" target="_blank"><b>NIES-30</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MRCG00000000" target="_blank">MRCG00000000</a>) <br/> <a href="https://doi.org/10.1128/genomeA.01676-16" target="_blank">Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).</a> </div> </li> <li> <b><i>Leptolyngbya</i> sp.</b>   <a href="strainList.do?strainId=2496" target="_blank"><b>NIES-2104</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/BBWW00000000" target="_blank">BBWW00000000</a>) <br/> <a href="https://doi.org/10.1186/s12862-015-0544-5" target="_blank">Shimura, Y., Hirose, Y., Misawa, N., Osana, Y., Katoh, H., Yamaguchi, H., Kawachi, M. 2015 Comparison of the terrestrial cyanobacterium Leptolyngbya sp. NIES-2104 and the freshwater Leptolyngbya boryana PCC 6306 genomes. DNA Res., 22, 403-412.</a> </div> </li> <li> <b><i>Leptolyngbya</i> sp.</b>   <a href="strainList.do?strainId=3753" target="_blank"><b>NIES-3755</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/AP017308" target="_blank">AP017308</a>) <br/> <a href="https://doi.org/https://doi.org/10.1016/j.jbiotec.2016.01.011" target="_blank">Hirose, Y. et al. 2016. Complete genome sequence of cyanobacterium <i>Fischerella</i> sp. strain NIES-3754, providing thermoresistant optogenetic tools. J. Biotechnol., 220, 45-46.</a> </div> </li> <li> <b><i>Leucocryptos marina</i></b>   <a href="strainList.do?strainId=1609" target="_blank"><b>NIES-1335</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/LC515368" target="_blank">LC515368</a>) <br/> <a href="https://doi.org/10.3389/fevo.2020.00140" target="_blank">Nishimura. Y., Kume, K., Sonehara, K., Tanifuji, G., Shiratori, T., Ishida, K-I., Hashimoto, T., Inagaki, Y., Ohkuma, M. 2020 Mitochondrial genomes of <i>Hemiarma marina</i> and <i>Leucocryptos marina</i> revised the evolution of cytochrome <i>c</i> maturation in Cryptista. Front. Ecol. Evol., 8, 140 (article ID).</a> </div> </li> <li> <b><i>Marsupiomonas</i> sp.</b>   <a href="strainList.do?strainId=2055" target="_blank"><b>NIES-1824</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Plastid DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/KM462870" target="_blank">KM462870</a>) <br/> <a href="https://doi.org/10.1186/s12862-014-0211-2" target="_blank">Lemieux, C., Otis, C., Turmel, M. 2014 Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae. BMC Evol. Biol., 14, 211.</a> <br/> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MN782006" target="_blank">MN782006</a>) <br/> <a href="https://doi.org/10.1080/23802359.2019.1710283" target="_blank">Turmel, M., Otis, C., Lemieux, C. 2020 Complete mitogenome of the chlorophyte green alga <em>Marsupiomonas</em> sp. NIES 1824 (Pedinophyceae). Mitochondrial DNA Part B-Resour. 5, 548-550. </a> </div> </li> <li> <b><i>Mastigocladus</i> sp.</b>   <a href="strainList.do?strainId=748" target="_blank"><b>NIES-592</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MRCA00000000" target="_blank">MRCA00000000</a>) <br/> <a href="https://doi.org/10.1128/genomeA.01676-16" target="_blank">Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).</a> </div> </li> <li> <b><i>Mastigocladus</i> sp.</b>   <a href="strainList.do?strainId=3752" target="_blank"><b>NIES-3754</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/AP017305" target="_blank">AP017305</a>) <br/> <a href="https://doi.org/10.1016/j.jbiotec.2016.01.011" target="_blank">Hirose, Y. et al. 2016. Complete genome sequence of cyanobacterium <i>Fischerella</i> sp. strain NIES-3754, providing thermoresistant optogenetic tools. J. Biotechnol., 220, 45-46.</a> </div> </li> <li> <b><i>Mayamaea pseudoterrestris</i></b>   <a href="strainList.do?strainId=4278" target="_blank"><b>NIES-4280</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BROI00000000" target="_blank">BROI00000000</a>) <br/> <a href="https://doi.org/10.1093/dnares/dsac037" target="_blank">Suzuki, S. et al. 2022. Rapid transcriptomic and physiological changes in the freshwater pennate diatom <i>Mayamaea pseudoterrestris</i> in response to copper exposure. DNA Res., 29, dsac037 (article ID).</a> </div> </li> <li> <b><i>Medakamo hakoo</i></b>   <a href="strainList.do?strainId=3998" target="_blank"><b>NIES-4000</b></a>   <a class="showOrHide">Whole-genome, Organella Genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nucleotide?cmd=Search&term=CP089450%3ACP089465%5Baccn%5D" target="_blank">CP089450-CP089465</a>) <br/> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/LC604817" target="_blank">LC604817</a>) <br/> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/LC604816" target="_blank">LC604816</a>) <br/><br/> <a href="https://doi.org/10.1111/nph.17763" target="_blank">Kato, S. et al. 2023. Genomic analysis of an ultrasmall freshwater green alga, <i>Medakamo hakoo</i>. Commun. Biol., 6, 89 (article ID).</a> </div> </li> <li> <b><i>Mesostigma viride</i></b>   <a href="strainList.do?strainId=435" target="_blank"><b>NIES-296</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/RPFO00000000" target="_blank">RPFO00000000</a>) <br/> <a href="https://doi.org/10.1002/advs.201901850" target="_blank">Liang, Z., Geng, Y., Ji, C. et al. 2020 Mesostigma viride genome and transcriptome provide insights into the origin and evolution of Streptophyta. Adv. Sci., 7, 1901850 (article ID).</a> <br/> Mitochondorial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/AF353999" target="_blank">AF353999</a>) <br/> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/AF166114" target="_blank">AF166114</a>) </div> </li> <li> <b><i>Mesostigma viride</i></b>   <a href="strainList.do?strainId=521" target="_blank"><b>NIES-477</b></a>   <a class="showOrHide">Plastid genome</a>  <font color="#FF0000"><b>new</b></font> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/OR168112" target="_blank">OR168112</a>) <br/> <a href="http://dx.doi.org/10.1111/jpy.13359" target="_blank">Glass, S. E. et al. 2023. Chloroplast genome evolution and phylogeny of the early-diverging charophycean green algae with a focus on the Klebsormidiophyceae and <i>Streptofilum</i>.</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=42" target="_blank"><b>NIES-44</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/BBPA00000000" target="_blank">BBPA00000000</a>) <br/> <a href="https://doi.org/10.1128/genomeA.00135-15" target="_blank">Okano, K., Miyata, N., Ozaki, Y. 2015. Whole genome sequence of the non-microcystin-producing <i>Microcystis aeruginosa</i>strain NIES-44. GenomeA, 3, e00135-15.</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=43" target="_blank"><b>NIES-87</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/BFAC00000000" target="_blank">BFAC00000000</a>) <br/> <a href="https://doi.org/10.1128/genomeA.01596-17" target="_blank">Yamaguchi, H., Suzuki, S., Kawachi, M. 2018. Draft genome sequence of <i>Microcystis aeruginosa</i> NIES-87, a bloom-forming cyanobacterium from Lake Kasumigaura, Japan. GenomeA, 6, e01596-17.</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=44" target="_blank"><b>NIES-88</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/JXYX00000000/" target="_blank">JXYX00000000</a>) <br/> <a href="https://doi.org/10.1002/anie.201509920" target="_blank">Parajuli, A., Kwak, D. H., Dalponte, L., Leikoski, N., Galica, T., Umeobika, U., Trembleau, L., Bent, A., Sivonen, K., Wahlsten, M. 2016 A unique tryptophan c-prenyltransferase from the kawaguchipeptin biosynthetic pathway. Angew. Chem.-Int. Edit., 7, 3596-3599.</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=56" target="_blank"><b>NIES-98</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/MDZH01000000" target="_blank">Whole-genome</a> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=62" target="_blank"><b>NIES-102</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP019314" target="_blank">Whole-genome</a> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=426" target="_blank"><b>NIES-298</b></a>   <a class="showOrHide">Draft genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/bioproject/PRJNA91065/" target="_blank">PRJNA91065</a>) <br/> <a href="https://doi.org/10.4014/jmb.1112.12034" target="_blank">Rhee, JS. et al. 2012. Draft genome database construction from four strains (NIES-298, FCY-26, -27, and -28) of the Cyanobacterium <i>Microcystis aeruginosa</i>. J. Microbiol. Biotechnol., 22, 1208-1213.</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=1020" target="_blank"><b>NIES-843</b></a>   <a class="showOrHide"> Whole-genome</a> <div class="accordionContent" style="display:none;"> A typical bloom-forming unicellular cyanobacterium with gas vacuoles, which accumulates in the surface of lakes and reservoirs. Some strains produce hepatotoxins known as microcystins. Whole genome sequences were determined by the collaborative research group of Kazusa DNA Research Institute, University of Tsukuba and National Institute for Environmental Studies (NIES) in 2007. <br/> The genome of <i>M. aeruginosa</i> is a single, circular chromosome of ca. 6 Mbp, comprising 6,325 protein-encoding genes. The microcystin synthase gene cluster (<i>mcyA-J</i>) was also found. Transposons amount to ca. 12% of the entire genome, whereas the number of genes for histidine kinases and response regulators is small. <br/> <a href="http://bacteria.kazusa.or.jp/cyanobase/Microcystis" target="_blank">CyanoBase</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=1434" target="_blank"><b>NIES-1211</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BEIV00000000.1" target="_blank">BEIV00000000</a>) <br/> <a href="https://doi.org/10.3389/fmicb.2018.01150" target="_blank">Tanabe, Y., Hodoki, Y., Sano, T., Tada, K., Watanabe, MM. 2018a Adaptation of the freshwater bloom-forming cyanobacterium Microcystis aeruginosa to brackish water is driven by recent horizontal transfer of sucrose genes. Front. Microbiol., 9, 1150 (article ID).</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=2964" target="_blank"><b>NIES-2481</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/CP012375" target="_blank">CP012375</a>) <br/> <a href="https://doi.org/10.7150/jgen.24935 " target="_blank">Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M. 2018 Complete genome sequence of Microcystis aeruginosa NIES-2481 and common genomic features of group G M. aeruginosa. J. Genomics, 6, 30-33.</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=2985" target="_blank"><b>NIES-2549</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/CP011304" target="_blank">CP011304</a>) <br/> <a href="https://doi.org/10.1186/s12862-015-0544-5" target="_blank">Yamaguchi, H., Suzuki, S., Tanabe, Y., Osana, Y., Shimura, Y., Ishida, K-I., Kawachi, M. 2015 Complete genome sequence of Microcystis aeruginosa NIES-2549, a bloom-forming cyanobacterium from lake Kasumigaura, Japan. GenomeA, 3, e00551-15 (article ID).</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=3785" target="_blank"><b>NIES-3787</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BJCH00000000" target="_blank">BJCH00000000</a>) <br/> <a href="https://doi.org/10.1128/MRA.00052-20" target="_blank">Yamaguchi, H., Suzuki, S., Kawachi, M. 2020 Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan. Microbiol Resour Announc., 9, e00052-20 (article ID).</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=3802" target="_blank"><b>NIES-3804</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BJCI00000000" target="_blank">BJCI00000000</a>) <br/> <a href="https://doi.org/10.1128/MRA.00052-20" target="_blank">Yamaguchi, H., Suzuki, S., Kawachi, M. 2020 Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan. Microbiol Resour Announc., 9, e00052-20 (article ID).</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=3804" target="_blank"><b>NIES-3806</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BJCJ00000000" target="_blank">BJCJ00000000</a>) <br/> <a href="https://doi.org/10.1128/MRA.00052-20" target="_blank">Yamaguchi, H., Suzuki, S., Kawachi, M. 2020 Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan. Microbiol Resour Announc., 9, e00052-20 (article ID).</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=3805" target="_blank"><b>NIES-3807</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BJCK00000000" target="_blank">BJCK00000000</a>) <br/> <a href="https://doi.org/10.1128/MRA.00052-20" target="_blank">Yamaguchi, H., Suzuki, S., Kawachi, M. 2020 Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan. Microbiol Resour Announc., 9, e00052-20 (article ID).</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=4323" target="_blank"><b>NIES-4325</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BJKP00000000" target="_blank">BJKP00000000</a>) <br/> <a href="https://doi.org/10.1093/femsle/fnz190" target="_blank">Tanabe, Y., Yamaguchi, H., Sano, T., Kawachi, M. 2019 A novel salt-tolerant genotype illuminates the sucrose gene evolution in freshwater bloom-forming cyanobacterium Microcystis aeruginosa. FEMS Mircobiol. Lett., 366, fnz190 (article ID).</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=4232" target="_blank"><b>NIES-4234</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BDSG00000000" target="_blank">BDSG00000000</a>) <br/> <a href="https://doi.org/10.3389/fmicb.2018.01150" target="_blank">Tanabe, Y., Hodoki, Y., Sano, T., Tada, K., Watanabe, MM. 2018a Adaptation of the freshwater bloom-forming cyanobacterium Microcystis aeruginosa to brackish water is driven by recent horizontal transfer of sucrose genes. Front. Microbiol., 9, 1150 (article ID).</a> </div> </li> <li> <b><i>Microcystis aeruginosa</i></b>   <a href="strainList.do?strainId=4283" target="_blank"><b>NIES-4285</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BIFY00000000" target="_blank">BIFY00000000</a>) <br/> <a href="https://doi.org/10.1128/MRA.00001-19" target="_blank">Tanabe, Y. & Yamaguchi, H. 2019 Draft Genome Sequence of Microcystis aeruginosa NIES-4285, Isolated from Brackish Water (Lake Abashiri, Japan). Microbiol Resour Announc., 8, e00001-19 (article ID).</a> </div> </li> <li> <b><i>Micromonas pusilla</i></b>   <a href="strainList.do?strainId=3094" target="_blank"><b>NIES-2672</b></a>   <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA39769/" target="_blank">Whole-genome</a> </li> <li> <b><i>Nephroselmis astigmatica</i></b>   <a href="strainList.do?strainId=399" target="_blank"><b>NIES-252</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Plastid DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/NC_024829" target="_blank">NC_024829</a>, <a href="http://www.ncbi.nlm.nih.gov/nuccore/KJ746600" target="_blank">KJ746600</a>) <br/> <a href="https://doi.org/10.1186/1471-2164-15-857" target="_blank">Lemieux, C., Otis, C.,Turmel, M. 2014 Six newly sequenced chloroplast genomes from prasinophyte green algae provide insights into the relationships among prasinophyte lineages and the diversity of streamlined genome architecture in picoplanktonic species. BMC Evol. Biol., 14, 857.</a> </div> </li> <li> <b><i>Nephroselmis olivacea</i></b>   <a href="strainList.do?strainId=523" target="_blank"><b>NIES-484</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondoria DNA (<a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=nucleotide&cmd=Search&term=AF110138" target="_blank">AF110138</a>) <br/> Plastid DNA (<a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=nucleotide&cmd=Search&term=AF137379" target="_blank">AF137379</a>) </div> </li> <li> <b><i>Nitzschia palea</i></b>   <a href="strainList.do?strainId=3191" target="_blank"><b>NIES-2729</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018512" target="_blank">AP018512</a>) <br/> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018511" target="_blank">AP018511</a>) <br/><br/> <a href="https://doi.org/10.1016/j.protis.2018.04.009" target="_blank">Kamikawa, R., Azuma, T., Ishii, K-I., Matsuno, Y., Miyashita, H. 2018 Diversity of organellar genomes in non-photosynthetic diatoms. Protist, 169, 351-361.</a> </div> </li> <li> <b><i>Nitzschia putrida</i></b>   <a href="strainList.do?strainId=4237" target="_blank"><b>NIES-4239</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/BLYE00000000" target="_blank">Whole-genome</a> </li> <li> <b><i>Nitzschia</i> sp.</b>   <a href="strainList.do?strainId=3574" target="_blank"><b>NIES-3576</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018509" target="_blank">AP018509</a>) <br/> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018508" target="_blank">AP018508</a>) <br/> <a href="https://doi.org/10.1016/j.protis.2018.04.009" target="_blank">Kamikawa, R., Azuma, T., Ishii, K-I., Matsuno, Y., Miyashita, H. 2018 Diversity of organellar genomes in non-photosynthetic diatoms. Protist, 169, 351-361.</a> </div> </li> <li> <b><i>Nitzschia</i> sp.</b>   <a href="strainList.do?strainId=3579" target="_blank"><b>NIES-3581</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018510" target="_blank">AP018510</a>) <br/> <a href="https://doi.org/10.1016/j.protis.2018.04.009" target="_blank">Kamikawa, R., Azuma, T., Ishii, K-I., Matsuno, Y., Miyashita, H. 2018 Diversity of organellar genomes in non-photosynthetic diatoms. Protist, 169, 351-361.</a> </div> </li> <li> <b><i>Nodularia</i> sp.</b>   <a href="strainList.do?strainId=3583" target="_blank"><b>NIES-3585</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/BDUB01000000" target="_blank">Whole-genome</a> </li> <li> <b><i>Nostoc carneum</i></b>   <a href="strainList.do?strainId=2499" target="_blank"><b>NIES-2107</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018180" target="_blank">Whole-genome</a> </li> <li> <b><i>Nostoc linckia</i></b>   <a href="strainList.do?strainId=172" target="_blank"><b>NIES-25</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018222" target="_blank">Whole-genome</a> </li> <li> <b><i>Nostoc punctiforme</i></b>   <a href="strainList.do?strainId=2500" target="_blank"><b>NIES-2108</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LXQE00000000" target="_blank">Whole-genome</a> </li> <li> <b><i>Nostoc</i> sp.</b>   <a href="strainList.do?strainId=2501" target="_blank"><b>NIES-2109</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018318" target="_blank">Whole-genome</a> </li> <li> <b><i>Nostoc</i> sp.</b>   <a href="strainList.do?strainId=2503" target="_blank"><b>NIES-2111</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018184" target="_blank">Whole-genome</a> </li> <li> <b><i>Nostoc</i> sp.</b>   <a href="strainList.do?strainId=3754" target="_blank"><b>NIES-3756</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/AP017295" target="_blank">AP017295</a>) <br/><br/> <a href="https://doi.org/10.1016/j.jbiotec.2015.12.002" target="_blank">Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering. J. Biotechnol., 218, 51-52.</a> </div> </li> <li> <b><i>Nostoc</i> sp.</b>   <a href="strainList.do?strainId=4101" target="_blank"><b>NIES-4103</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018288" target="_blank">Whole-genome</a> </li> <li> <b><i>Oltmansiellopsis viridis</i></b>   <a href="strainList.do?strainId=414" target="_blank"><b>NIES-360</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Mitochondoria DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/DQ365900" target="_blank">DQ365900</a>) <br/> Plastid DNA (<a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=nucleotide&cmd=Search&term=DQ291132" target="_blank">DQ291132</a>) </div> </li> <li> <b><i>Oscillatoria rosea</i></b>   <a href="strainList.do?strainId=286" target="_blank"><b>NIES-208</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MRBY00000000" target="_blank">MRBY00000000</a>) <br/><br/> <a href="https://doi.org/10.1128/genomeA.01676-16" target="_blank">Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).</a> </div> </li> <li> <b><i>Parachlorella kessleri</i></b>   <a href="strainList.do?strainId=2544" target="_blank"><b>NIES-2152</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BBXU00000000" target="_blank">BBXU00000000</a>) <br/><br/> <a href="https://doi.org/10.1186/s13068-016-0424-2" target="_blank">Ota, S., Oshima, K., Yamazaki, T., Kim, S., Yu, Z., Yoshihara, M., Takeda, K., Takeshita, T., Hirata, A., Bišová, K., Zachleder, V., Hattori, M., Kawano, S. 2016 Highly efficient lipid production in the green alga Parachlorella kessleri: draft genome and transcriptome endorsed by whole-cell 3D ultrastructure. Biotechnol. Biofuels, 9, 13 (article ID).</a> </div> </li> <li> <b><i>Pelatocladus</i> sp.</b>   <a href="strainList.do?strainId=4104" target="_blank"><b>NIES-4106</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018300" target="_blank">Whole-genome</a> </li> <li> <b><i>Phormidium ambiguum</i></b>   <a href="strainList.do?strainId=2511" target="_blank"><b>NIES-2119</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MRCE00000000" target="_blank">MRCE00000000</a>) <br/><br/> <a href="https://doi.org/10.1128/genomeA.01676-16" target="_blank">Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).</a> </div> </li> <li> <b><i>Planktothrix agardhii</i></b>   <a href="strainList.do?strainId=280" target="_blank"><b>NIES-204</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nucleotide?cmd=Search&term=AP017991%3AAP017995%5Baccn%5D" target="_blank">AP017991-AP017995</a>) <br/> <a href="https://doi.org/10.1016/j.hal.2020.101942" target="_blank">Shimura, Y., Fujisawa, T., Hirose, Y., Misawa, N., Kanesaki, Y., Nakamura, Y., Kawachi, M. 2020 Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium <i>Planktothrix agardhii</i> NIES-204<sup>T</sup> and detailed analysis of secondary metabolite gene clusters. Harmful Algae, 101942 (article ID). </a> </div> </li> <li> <b><i>Planktothrix agardhii</i></b>   <a href="strainList.do?strainId=1029" target="_blank"><b>NIES-905</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BJCD00000000" target="_blank">BJCD00000000</a>) <br/> <a href="https://doi.org/10.1128/MRA.00605-19" target="_blank">Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 Draft genome sequences of three filamentous cyanobacterial strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949. Microbiol Resour Announc., , e00605-19 (article ID).</a> </div> </li> <li> <b><i>Pleodorina starrii</i></b>   <a href="strainList.do?strainId=1635" target="_blank"><b>NIES-1363</b></a>   <a class="showOrHide">Whole-genome, Organella Genome</a> <div class="accordionContent" style="display:none;"> <br/> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BRXT00000000.1" target="_blank">BRXT00000000</a>) <br/> Mitochondria DNA ( <a href="http://www.ncbi.nlm.nih.gov/nuccore/NC_021108" target="_blank">NC_021108</a>, <a href="http://www.ncbi.nlm.nih.gov/nuccore/JX977845" target="_blank">JX977845</a>) <br/> Plastid DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/NC_021109" target="_blank">NC_021109</a>, <a href="http://www.ncbi.nlm.nih.gov/nuccore/JX977846" target="_blank">JX977846</a>) <br/><br/> <a href="https://doi.org/10.1038/s42003-023-04949-1" target="_blank">Takahashi, K., Suzuki, S., Kawai-Toyooka, H., Yamamoto, K., Hamaji, T., Ootsuki, R., Yamaguchi, H., Kawachi, M., Higashiyama, T., Nozaki, H. 2023 Reorganization of the ancestral sex-determining regions during the evolution of trioecy in <i>Pleodorina starrii</i>. Commun. Biol., 6, 590 (article ID).</a> <br/> <a href="https://doi.org/10.1093/molbev/mst002" target="_blank">Smith, D. R., Hamaji, T., Olson, B. J., Durand, P. M., Ferris, P., Michod, R. E., Featherston, J., Nozaki, H., Keeling, P. J. 2013 Organelle genome complexity scales positively with organism size in volvocine green algae. Mol. Biol. Evol., 30, 793-797.</a> </div> </li> <li> <b><i>Pleodorina starrii</i></b>   <a href="strainList.do?strainId=4477" target="_blank"><b>NIES-4479</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BRXU00000000.1" target="_blank">BRXU00000000</a>) <br/> <a href="https://doi.org/10.1038/s42003-023-04949-1" target="_blank">Takahashi, K., Suzuki, S., Kawai-Toyooka, H., Yamamoto, K., Hamaji, T., Ootsuki, R., Yamaguchi, H., Kawachi, M., Higashiyama, T., Nozaki, H. 2023 Reorganization of the ancestral sex-determining regions during the evolution of trioecy in <i>Pleodorina starrii</i>. Commun. Biol., 6, 590 (article ID).</a> </div> </li> <li> <b><i>Pleodorina starrii</i></b>   <a href="strainList.do?strainId=4479" target="_blank"><b>NIES-4481</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BRXV00000000.1" target="_blank">BRXV00000000</a>) <br/> <a href="https://doi.org/10.1038/s42003-023-04949-1" target="_blank">Takahashi, K., Suzuki, S., Kawai-Toyooka, H., Yamamoto, K., Hamaji, T., Ootsuki, R., Yamaguchi, H., Kawachi, M., Higashiyama, T., Nozaki, H. 2023 Reorganization of the ancestral sex-determining regions during the evolution of trioecy in <i>Pleodorina starrii</i>. Commun. Biol., 6, 590 (article ID).</a> </div> </li> <li> <b><i>Porphyridium purpureum</i></b>   <a href="strainList.do?strainId=2532" target="_blank"><b>NIES-2140</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/AP012987" target="_blank">AP012987</a>) <br/><br/> <a href="https://doi.org/10.1007/s10265-014-0627-1" target="_blank">Tajima, N. et al. 2014. Analysis of the complete plastid genome of the unicellular red alga <i>Porphyridium purpureum</i>. J. Plant Res., 127:389-397.</a> </div> </li> <li> <b><i>Prochlorococcus marinus</i></b>   <a href="strainList.do?strainId=2479" target="_blank"><b>NIES-2087</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BX548174" target="_blank">BX548174</a>) <br/><br/> <a href="https://doi.org/10.1038/nature01947" target="_blank">Rocap, G. et al. 2003. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature, 424, 1042-1047.</a> </div> </li> <li> <b><i>Proteomonas</i> sp.</b>   <a href="strainList.do?strainId=1232" target="_blank"><b>NIES-1005</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648957" target="_blank">Plastid genome</a> </li> <li> <b><i>Proteomonas</i> sp.</b>   <a href="strainList.do?strainId=1649" target="_blank"><b>NIES-1375</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648960" target="_blank">Plastid genome</a> </li> <li> <b><i>Pycnococcus provasolii</i></b>   <a href="strainList.do?strainId=3324" target="_blank"><b>NIES-2893</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BNJQ00000000" target="_blank">BNJQ00000000</a>) <br/> <a href="https://doi.org/10.1038/s41467-021-23741-5" target="_blank">Makita, Y. et al. 2021 Identification of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton. Nat Commun 12, 3593 (article ID).</a> </div> </li> <li> <b><i>Raphidiopsis curvata</i></b>   <a href="strainList.do?strainId=1169" target="_blank"><b>NIES-932</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018317" target="_blank">Whole-genome</a> </li> <li> <b><i>Raphidocelis subcapitata</i></b>   <a href="strainList.do?strainId=26" target="_blank"><b>NIES-35</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BDRX00000000.1" target="_blank">BDRX00000000</a>) <br/> <a href="https://doi.org/10.1038/s41598-018-26331-6" target="_blank">Suzuki, S., Yamaguchi, H., Nakajima, N., Kawachi, M. 2018 Raphidocelis subcapitata (=Pseudokirchneriella subcapitata) provides an insight into genome evolution and environmental adaptations in the Sphaeropleales. Sci Rep, 8, 8058 (article ID).</a> </div> </li> <li> <b><i>Rhodomonas</i> sp.</b>   <a href="strainList.do?strainId=1233" target="_blank"><b>NIES-1006</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648958" target="_blank">Plastid genome</a> </li> <li> <b><i>Rhodomonas</i> sp.</b>   <a href="strainList.do?strainId=2011" target="_blank"><b>NIES-1730</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648961" target="_blank">Plastid genome</a> </li> <li> <b><i>Rhodomonas</i> sp.</b>   <a href="strainList.do?strainId=654" target="_blank"><b>NIES-2332</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/LC648963" target="_blank">Plastid genome</a> </li> <li> <b><i>Scenedesmus obliquus</i></b>   <a href="strainList.do?strainId=2671" target="_blank"><b>NIES-2279</b></a>   <a class="showOrHide">Organella Genome読</a> <div class="accordionContent" style="display:none;"> Plastid DNA (<a href="http://www.ncbi.nlm.nih.gov/nuccore/DQ396875" target="_blank">DQ396875</a>) <br/><br/> <a href="https://doi.org/10.1186/1471-2148-6-37" target="_blank">de Cambiaire, J.C., Otis, C., Lemieux, C., Turmel, M. 1997. The complete chloroplast genome sequence of the chlorophycean green alga <i>Scenedesmus obliquus</i> reveals a compact gene organization and a biased distribution of genes on the two DNA strands. Nucleic Acids Res. 25, 2610-2619.</a> </div> </li> <li> <b><i>Scytonema</i> sp.</b>   <a href="strainList.do?strainId=2522" target="_blank"><b>NIES-2130</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/MRCF00000000" target="_blank">MRCF00000000</a>) <br/><br/> <a href="https://doi.org/10.1128/genomeA.01676-16" target="_blank">Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).</a> </div> </li> <li> <b><i>Sphaerospermopsis kisseleviana</i></b>   <a href="strainList.do?strainId=8" target="_blank"><b>NIES-73</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018314" target="_blank">Whole-genome</a> </li> <li> <b><i>Sphaerospermopsis reniformis</i></b>   <a href="strainList.do?strainId=2320" target="_blank"><b>NIES-1949</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BJCE01000001" target="_blank">BJCE01000001</a>) <br/> <a href="https://doi.org/10.1128/MRA.00605-19" target="_blank">Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 Draft genome sequences of three filamentous cyanobacterial strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949. Microbiol Resour Announc., , e00605-19 (article ID).</a> </div> </li> <li> <b><i>Spumella</i> sp.</b>   <a href="strainList.do?strainId=1653" target="_blank"><b>NIES-1846</b></a>   <a class="showOrHide">Organella Genome</a> <div class="accordionContent" style="display:none;"> Plastid DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/AP019363" target="_blank">AP019363</a>) <br/> <a href="https://doi.org/10.1073/pnas.1819976116" target="_blank">Dorrell, R. G., Azuma, T., Nomura, M., Audren de Kerdrel, G., Paoli, L., Yang, S., Bowler, C., Ishii, K.-I., Miyashita, H., Gile, G. H., Kamikawa, R. 2019 Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes. Proc. Natl. Acad. Sci. U. S. A., 116, 6914-6923.</a> </div> </li> <li> <b><i>Stanieria</i> sp.</b>   <a href="strainList.do?strainId=3755" target="_blank"><b>NIES-3757</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP017375" target="_blank">Whole-genome</a> </li> <li> <b><i>Symbiodinium minutum</i></b>   <a href="strainList.do?strainId=3806" target="_blank"><b>NIES-3808</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="http://www.ncbi.nlm.nih.gov/nuccore/BASF00000000.1" target="_blank">BASF00000000</a>) <br/><br/> <a href="https://doi.org/10.1016/j.cub.2013.05.062" target="_blank">Shoguchi, E. et al. 2013. Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr. Biol., 23, 1399–1408.</a> </div> </li> <li> <b><i>Symbiodinium</i> sp.</b>   <a href="strainList.do?strainId=4074" target="_blank"><b>NIES-4076</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/1408283571" target="_blank">BGNK00000000</a>) <br/> <a href="https://doi.org/10.1186/s12864-018-4857-9" target="_blank">Shoguchi, E., Beedessee, G., Tada, I., Hisata, K., Kawashima, T., Takeuchi, T., Arakaki, N., Fujie, M., Koyanagi, R., Roy, M. C., Kawachi, M., Hidaka, M., Satoh, N., Shinzato, C. 2018 Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. BMC Genomics, 19, 458 (article ID).</a> </div> </li> <li> <b><i>Synechococcus leopoliensis</i></b>   <a href="strainList.do?strainId=2725" target="_blank"><b>NIES-3277</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP008231" target="_blank">Whole-genome</a> </li> <li> <b><i>Synechococcus</i> sp.</b>   <a href="strainList.do?strainId=1173" target="_blank"><b>NIES-970</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP017959" target="_blank">Whole-genome</a> </li> <li> <b><i>Tetrabaena socialis</i></b>   <a href="strainList.do?strainId=724" target="_blank"><b>NIES-571</b></a>   <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA393411/" target="_blank">Whole-genome</a> </li> <li> <b><i>Thermosynechococcus elongatus</i></b>   <a href="strainList.do?strainId=2525" target="_blank"><b>NIES-2133</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> <i>T. elongatus</i> is unicellular, non-nitrogen-fixing cyanobacterium isolated from a hot spring in Beppu, Japan. This alga is thermophilic and maximum growth is obtained at 57°C. <br/> Whole genome sequences were determined in 2002 as the strain BP-1. The genome of <i>T. elongatus</i> is a single circular chromosome of ca. 2.6 Mbp, comprising 2,475 protein-encoding genes. <br/> <a href="http://genome.microbedb.jp/cyanobase/Thermo" target="_blank">CyanoBase</a> </div> </li> <li> <b><i>Thermosynechococcus vulcanus</i></b>   <a href="strainList.do?strainId=2526" target="_blank"><b>NIES-2134</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018202" target="_blank">Whole-genome</a> </li> <li> <b><i>Tolypothrix tenuis</i></b>   <a href="strainList.do?strainId=349" target="_blank"><b>NIES-37</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/AP018248" target="_blank">Whole-genome</a> </li> <li> <b><i>Triparma laevis</i> f. <i>inornata</i></b>   <a href="strainList.do?strainId=3076" target="_blank"><b>NIES-2565</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BLQM00000000" target="_blank">BLQM00000000</a>) <br/> <a href="https://doi.org/10.1128/MRA.00367-20" target="_blank">Kuwata, A., Saitoh, K., Nakamura, Y., Ishinomiya, M., Sato, N. 2020 Draft whole-genome sequence of <i>Triparma laevis</i> f. <i>inornata</i> (Parmales, Bolidophyceae), isolated from the Oyashio region, Western North Pacific Ocean. Microbiol Resour Announc., 9, e00367-20 (article ID).</a> <br/> <a href="https://doi.org/10.1038/s42003-023-05002-x" target="_blank">Ban, H., Sato, S., Yoshikawa, S., Yamada, K., Nakamura, Y., Ichinomiya, M., Sato, N., Blanc-Mathieu, R., Endo, H., Kuwata, A., Ogata, H. 2023 Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Commun. Biol., 6, 697 (article ID).</a> </div> </li> <li> <b><i>Triparma laevis</i> f. <i>inornata</i></b>   <a href="strainList.do?strainId=3697" target="_blank"><b>NIES-3699</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BLQM00000000" target="_blank">BLQM00000000</a>) <br/> <a href="https://doi.org/10.1038/s42003-023-05002-x" target="_blank">Ban, H., Sato, S., Yoshikawa, S., Yamada, K., Nakamura, Y., Ichinomiya, M., Sato, N., Blanc-Mathieu, R., Endo, H., Kuwata, A., Ogata, H. 2023 Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Commun. Biol., 6, 697 (article ID).</a> </div> </li> <li> <b><i>Triparma strigata</i></b>   <a href="strainList.do?strainId=3699" target="_blank"><b>NIES-3701</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BRXY00000000.1" target="_blank">BRXY00000000</a>) <br/> <a href="https://doi.org/10.1038/s42003-023-05002-x" target="_blank">Ban, H., Sato, S., Yoshikawa, S., Yamada, K., Nakamura, Y., Ichinomiya, M., Sato, N., Blanc-Mathieu, R., Endo, H., Kuwata, A., Ogata, H. 2023 Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Commun. Biol., 6, 697 (article ID).</a> </div> </li> <li> <b><i>Triparma verrucosa</i></b>   <a href="strainList.do?strainId=3698" target="_blank"><b>NIES-3700</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BRXY00000000.1" target="_blank">BRXY00000000</a>) <br/> <a href="https://doi.org/10.1038/s42003-023-05002-x" target="_blank">Ban, H., Sato, S., Yoshikawa, S., Yamada, K., Nakamura, Y., Ichinomiya, M., Sato, N., Blanc-Mathieu, R., Endo, H., Kuwata, A., Ogata, H. 2023 Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Commun. Biol., 6, 697 (article ID).</a> </div> </li> <li> <b><i>Volvox africanus</i></b>   <a href="strainList.do?strainId=3778" target="_blank"><b>NIES-3780</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BNCO00000000.1" target="_blank">BNCO00000000</a>) <br/> <a href="https://doi.org/10.1016/j.hal.2020.101942" target="_blank">Yamamoto, K. et al. 2021 Three genomes in the algal genus <i>Volvox</i> reveal the fate of a haploid sex-determining region after a transition to homothallism. Proc. Natl. Acad. Sci. U. S. A., 118, e2100712118 (article ID).</a> </div> </li> <li> <b><i>Volvox reticuliferus</i></b>   <a href="strainList.do?strainId=3783" target="_blank"><b>NIES-3785</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BNCQ00000000.1" target="_blank">BNCQ01000000</a>) <br/> <a href="https://doi.org/10.1016/j.hal.2020.101942" target="_blank">Yamamoto, K. et al. 2021 Three genomes in the algal genus <i>Volvox</i> reveal the fate of a haploid sex-determining region after a transition to homothallism. Proc. Natl. Acad. Sci. U. S. A., 118, e2100712118 (article ID).</a> </div> </li> <li> <b><i>Volvox reticuliferus</i></b>   <a href="strainList.do?strainId=3784" target="_blank"><b>NIES-3786</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BNCP00000000.1" target="_blank">BNCP01000000</a>) <br/> <a href="https://doi.org/10.1016/j.hal.2020.101942" target="_blank">Yamamoto, K. et al. 2021 Three genomes in the algal genus <i>Volvox</i> reveal the fate of a haploid sex-determining region after a transition to homothallism. Proc. Natl. Acad. Sci. U. S. A., 118, e2100712118 (article ID).</a> </div> </li> <li> <b><i>Yamagishiella unicocca</i></b>   <a href="strainList.do?strainId=3980" target="_blank"><b>NIES-3982</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BDSL00000000.1" target="_blank">BDSL00000000</a>) <br/> <a href="https://doi.org/10.1038/s42003-018-0019-5" target="_blank">Hamaji, T., Kawai-Toyooka, H., Uchimura, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Miyagishima, S., Umen, J. G., Nozaki, H. 2018 Anisogamy evolved with a reduced sexdetermining region in volvocine green algae. Communications Biology, 17</a> <br/><br/> Mitochondrial DNA (<a href="https://www.ncbi.nlm.nih.gov/nuccore/KY442293" target="_blank">KY442293</a>) <br/> <a href="https://doi.org/10.1093/gbe/evx060" target="_blank">Hamaji, T., Kawai-Toyooka, H., Toyoda, A., Minakuchi, Y., Suzuki, M., Fujiyama, A., Nozaki, H., Smith, D. R. 2017 Multiple independent changes in mitochondrial genome conformation in chlamydomonadalean algae. Genome Biol. Evol., 9, 993-999.</a> </div> </li> <li> <b><i>Yamagishiella unicocca</i></b>   <a href="strainList.do?strainId=3981" target="_blank"><b>NIES-3983</b></a>   <a class="showOrHide">Whole-genome</a> <div class="accordionContent" style="display:none;"> Whole-genome (<a href="https://www.ncbi.nlm.nih.gov/nuccore/BDSK00000000.1" target="_blank">BDSK00000000</a>) <br/> <a href="https://doi.org/10.1038/s42003-018-0019-5" target="_blank">Hamaji, T., Kawai-Toyooka, H., Uchimura, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Miyagishima, S., Umen, J. G., Nozaki, H. 2018 Anisogamy evolved with a reduced sexdetermining region in volvocine green algae. Communications Biology, 17</a> </div> </li> <li> <b>Unidentified pedinophyte</b>   <a href="strainList.do?strainId=3042" target="_blank"><b>NIES-2566</b></a>   <a href="https://www.ncbi.nlm.nih.gov/nuccore/CAJZHL000000000.1" target="_blank">Whole-genome</a> </li> </ul> </section>  <div id="other_parts"> <hr> <div id="contents_policy_wrapper"></div> </div>  </section>  </div>  <div id="page-top" class="page_back"> <a href="#contents_wrapper"><img src="images/pagetop.png" alt="page-top" border="0" /></a> </div>  <div id="footer_wrapper"></div>  </body> </html>

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