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Escherichia coli BL21(DE3) - Wikipedia
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class="section-header" style="background:rgb(220,235,245);"><i>Escherichia coli</i> BL21(DE3) </th></tr> <tr> <th colspan="2" class="section-header" style="min-width:15em;text-align:center;background:rgb(220,235,245);"><a href="/wiki/Taxonomy_(biology)" title="Taxonomy (biology)">Scientific classification</a><span class="plainlinks" style="font-size:smaller; float:right; padding-right:0.4em; margin-left:-3em;"><span typeof="mw:File"><a href="/wiki/Template:Taxonomy/Escherichia" title="Edit this classification"><img alt="Edit this classification" src="//upload.wikimedia.org/wikipedia/commons/thumb/8/8a/OOjs_UI_icon_edit-ltr.svg/15px-OOjs_UI_icon_edit-ltr.svg.png" decoding="async" width="15" height="15" class="mw-file-element" srcset="//upload.wikimedia.org/wikipedia/commons/thumb/8/8a/OOjs_UI_icon_edit-ltr.svg/23px-OOjs_UI_icon_edit-ltr.svg.png 1.5x, //upload.wikimedia.org/wikipedia/commons/thumb/8/8a/OOjs_UI_icon_edit-ltr.svg/30px-OOjs_UI_icon_edit-ltr.svg.png 2x" data-file-width="20" data-file-height="20" /></a></span></span> </th></tr> <tr> <td>Domain: </td> <td><a href="/wiki/Bacteria" title="Bacteria">Bacteria</a> </td></tr> <tr> <td>Phylum: </td> <td><a href="/wiki/Pseudomonadota" title="Pseudomonadota">Pseudomonadota</a> </td></tr> <tr> <td>Class: </td> <td><a href="/wiki/Gammaproteobacteria" title="Gammaproteobacteria">Gammaproteobacteria</a> </td></tr> <tr> <td>Order: </td> <td><a href="/wiki/Enterobacterales" title="Enterobacterales">Enterobacterales</a> </td></tr> <tr> <td>Family: </td> <td><a href="/wiki/Enterobacteriaceae" title="Enterobacteriaceae">Enterobacteriaceae</a> </td></tr> <tr> <td>Genus: </td> <td><a href="/wiki/Escherichia" title="Escherichia"><i>Escherichia</i></a> </td></tr> <tr> <td>Species: </td> <td><span class="species"><i><a href="/wiki/Escherichia_coli" title="Escherichia coli">E. coli</a></i></span><br /><small></small> </td></tr> <tr> <td>Strain: </td> <td><span class="infraspecies_rank1"><b><i>E. c. </i> BL21(DE3)</b></span> </td></tr> <tr> <th colspan="2" class="section-header" style="background:rgb(220,235,245);"><a href="/wiki/Infraspecific_name_(botany)" class="mw-redirect" title="Infraspecific name (botany)">Trionomial name</a> </th></tr> <tr> <td colspan="2" class="taxon-section"><b><i>Escherichia coli</i> BL21(DE3)</b> </td></tr></tbody></table><style data-mw-deduplicate="TemplateStyles:r1227369696">.mw-parser-output table.biota-infobox{text-align:left;width:200px;font-size:100%}body.skin--responsive .mw-parser-output table.biota-infobox td:not(.image-section){padding:2px 10px}.mw-parser-output table.biota-infobox th.section-header{text-align:center}.mw-parser-output table.biota-infobox td.section-content{text-align:left;padding:0 0.25em}.mw-parser-output table.biota-infobox td.list-section{text-align:left;padding:0 0.25em}.mw-parser-output table.biota-infobox td.taxon-section{text-align:left;padding:0 0.25em}.mw-parser-output table.biota-infobox td.image-section{text-align:center;font-size:88%}.mw-parser-output table.biota-infobox table.taxonomy{margin:0 auto;text-align:left;background:transparent;padding:2px}.mw-parser-output table.biota-infobox table.taxonomy tr{vertical-align:top}.mw-parser-output table.biota-infobox table.taxonomy td{padding:1px}</style> <p><br /> <b><i><a href="/wiki/Escherichia_coli" title="Escherichia coli">Escherichia coli</a></i> BL21(DE3)</b> is a commonly used protein production strain. This strain combines several features that allow for excessive expression of heterologous <a href="/wiki/Protein" title="Protein">proteins</a>. It is derived from the B lineage of <i>E. coli</i>.<sup id="cite_ref-:0_1-0" class="reference"><a href="#cite_note-:0-1"><span class="cite-bracket">[</span>1<span class="cite-bracket">]</span></a></sup> </p> <meta property="mw:PageProp/toc" /> <div class="mw-heading mw-heading2"><h2 id="Naming">Naming</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Escherichia_coli_BL21(DE3)&action=edit&section=1" title="Edit section: Naming"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <p>The genotype of this strain is designated with <i>E. coli</i> B <i>F<sup>–</sup> ompT gal dcm lon hsdS<sub>B</sub>(r<sub>B</sub><sup>–</sup>m<sub>B</sub><sup>–</sup>) λ(DE3 [lacI lacUV5-T7p07 ind1 sam7 nin5]) [malB<sup>+</sup>]<sub>K-12</sub>(λ<sup>S</sup>)</i>.<sup id="cite_ref-2" class="reference"><a href="#cite_note-2"><span class="cite-bracket">[</span>2<span class="cite-bracket">]</span></a></sup> </p> <div class="mw-heading mw-heading2"><h2 id="Characteristics">Characteristics</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Escherichia_coli_BL21(DE3)&action=edit&section=2" title="Edit section: Characteristics"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <div class="mw-heading mw-heading3"><h3 id="Decreased_proteolysis">Decreased proteolysis</h3><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Escherichia_coli_BL21(DE3)&action=edit&section=3" title="Edit section: Decreased proteolysis"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <p>The <a href="/wiki/Proteolysis" title="Proteolysis">proteolysis</a> of heterologously expressed proteins is reduced due to the functional deficiency of two major <a href="/wiki/Protease" title="Protease">proteases</a>, Lon and OmpT.<sup id="cite_ref-3" class="reference"><a href="#cite_note-3"><span class="cite-bracket">[</span>3<span class="cite-bracket">]</span></a></sup> Lon is usually present in the <a href="/wiki/Cytoplasm" title="Cytoplasm">cytoplasm</a> of the <a href="/wiki/Cell_(biology)" title="Cell (biology)">cell</a>, but in all B strains its production is prevented by an insertion within the <a href="/wiki/Promoter_(genetics)" title="Promoter (genetics)">promoter</a> sequence. OmpT is located in the outer <a href="/wiki/Membrane" title="Membrane">membrane</a> but is absent in B strains due to <a href="/wiki/Deletion_(genetics)" title="Deletion (genetics)">deletion</a>.<sup id="cite_ref-:1_4-0" class="reference"><a href="#cite_note-:1-4"><span class="cite-bracket">[</span>4<span class="cite-bracket">]</span></a></sup> </p> <div class="mw-heading mw-heading3"><h3 id="Expression_induction">Expression induction</h3><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Escherichia_coli_BL21(DE3)&action=edit&section=4" title="Edit section: Expression induction"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <p>While <i>E. coli</i> BL21(DE3) supports the expression of <a href="/wiki/Gene" title="Gene">genes</a> under the control of constitutive promoters, it is specifically engineered for <a href="/wiki/Isopropyl_%CE%B2-D-1-thiogalactopyranoside" title="Isopropyl β-D-1-thiogalactopyranoside">IPTG</a> induction of recombinant genes under the control of a T7 promoter. The realized induction strength depends on several factors, including the IPTG concentration and the timing of its supplementation.<sup id="cite_ref-5" class="reference"><a href="#cite_note-5"><span class="cite-bracket">[</span>5<span class="cite-bracket">]</span></a></sup> </p><p>This function is enabled by the presence of a recombinant λ-<a href="/wiki/Prophage" title="Prophage">prophage</a> (DE3). DE3 carries a <a href="/wiki/T7_RNA_polymerase" title="T7 RNA polymerase">T7 RNA polymerase</a> (RNAP) gene under the control of a <a href="/wiki/LacUV5" title="LacUV5">lacUV5</a> promoter (<i>lacUV5-T7 gene 1</i>). T7-RNAP is highly specific to the T7 promoter and orthogonal to native <i>E. coli</i> promoters. Therefore the T7-RNAP only transcribes (exogenously introduced) genes that are regulated by a T7 promoter.<sup id="cite_ref-6" class="reference"><a href="#cite_note-6"><span class="cite-bracket">[</span>6<span class="cite-bracket">]</span></a></sup> The LacUV5 promoter is derived from the <i>E. coli</i> <a href="/wiki/Wild_type" title="Wild type">wildtype</a> <a href="/wiki/Lac_promoter" class="mw-redirect" title="Lac promoter">lac promoter</a> but exhibits an increased transcription strength due to two mutations that facilitate its interaction with a native <i>E. coli</i> RNAP <a href="/wiki/Sigma_factor" title="Sigma factor">σ-factor</a>.<sup id="cite_ref-7" class="reference"><a href="#cite_note-7"><span class="cite-bracket">[</span>7<span class="cite-bracket">]</span></a></sup> </p><p>In <i>E. coli</i> BL21(DE3) the expression of the T7-RNAP is suppressed by the constitutively expressed <a href="/wiki/Lac_repressor" title="Lac repressor">LacI repressor</a>. LacI binds the <a href="/wiki/Lac_operator" class="mw-redirect" title="Lac operator">lac operator</a>, which is located downstream of the LacUV5 promoter, preventing the production of the T7-RNAP. However, upon supplementation of IPTG, the LacI repressor dissociates from the lac operator, allowing for the expression of T7-RNAP. Subsequently, T7-RNAP can initiate the transcription of a recombinant gene under T7 promoter control.<sup id="cite_ref-:0_1-1" class="reference"><a href="#cite_note-:0-1"><span class="cite-bracket">[</span>1<span class="cite-bracket">]</span></a></sup> </p><p>Other DE3 modifications ensure stable integration of the prophage in the <a href="/wiki/Genome" title="Genome">genome</a> and prevent the prophage from entering the <a href="/wiki/Lytic_cycle" title="Lytic cycle">lytic cycle</a> (<i>ind1</i>, <i>sam7</i>, and <i>nin5</i>).<sup id="cite_ref-8" class="reference"><a href="#cite_note-8"><span class="cite-bracket">[</span>8<span class="cite-bracket">]</span></a></sup> </p> <div class="mw-heading mw-heading3"><h3 id="Facilitated_cloning">Facilitated cloning</h3><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Escherichia_coli_BL21(DE3)&action=edit&section=5" title="Edit section: Facilitated cloning"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <p><i>E. coli</i> BL21(DE3) lacks a functional type I <a href="/wiki/Restriction_modification_system" title="Restriction modification system">restriction-modification system</a>, indicated by <i>hsdS(r<sub>B</sub><sup>-</sup> m<sub>B</sub><sup>-</sup></i>). Specifically, both the <a href="/wiki/Restriction_enzyme" title="Restriction enzyme">restriction</a> (<i>hsdR</i>) and modification (<i>hsdM</i>) domains are inactive. This enhances <a href="/wiki/Transformation_(genetics)" class="mw-redirect" title="Transformation (genetics)">transformation</a> efficiency since exogenously introduced unmethylated <a href="/wiki/DNA" title="DNA">DNA</a> remains untargeted by the restriction-modification system.<sup id="cite_ref-9" class="reference"><a href="#cite_note-9"><span class="cite-bracket">[</span>9<span class="cite-bracket">]</span></a></sup> </p><p>The <i>dcm</i> gene is also rendered inactive, preventing the <a href="/wiki/Methylation" title="Methylation">methylation</a> of a <a href="/wiki/Cytosine" title="Cytosine">cytosine</a> on both strands within the <a href="/wiki/Recognition_sequence" title="Recognition sequence">recognition sequence</a> 5'-CC(A/T)GG-3'.<sup id="cite_ref-10" class="reference"><a href="#cite_note-10"><span class="cite-bracket">[</span>10<span class="cite-bracket">]</span></a></sup> This facilitates further processing of purified DNA as Dcm methylation prevents cleavage by certain restriction enzymes.<sup id="cite_ref-11" class="reference"><a href="#cite_note-11"><span class="cite-bracket">[</span>11<span class="cite-bracket">]</span></a></sup> </p> <div class="mw-heading mw-heading2"><h2 id="References">References</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Escherichia_coli_BL21(DE3)&action=edit&section=6" title="Edit section: References"><span>edit</span></a><span class="mw-editsection-bracket">]</span></span></div> <style data-mw-deduplicate="TemplateStyles:r1239543626">.mw-parser-output .reflist{margin-bottom:0.5em;list-style-type:decimal}@media screen{.mw-parser-output .reflist{font-size:90%}}.mw-parser-output .reflist .references{font-size:100%;margin-bottom:0;list-style-type:inherit}.mw-parser-output .reflist-columns-2{column-width:30em}.mw-parser-output .reflist-columns-3{column-width:25em}.mw-parser-output .reflist-columns{margin-top:0.3em}.mw-parser-output .reflist-columns ol{margin-top:0}.mw-parser-output .reflist-columns li{page-break-inside:avoid;break-inside:avoid-column}.mw-parser-output .reflist-upper-alpha{list-style-type:upper-alpha}.mw-parser-output .reflist-upper-roman{list-style-type:upper-roman}.mw-parser-output .reflist-lower-alpha{list-style-type:lower-alpha}.mw-parser-output .reflist-lower-greek{list-style-type:lower-greek}.mw-parser-output .reflist-lower-roman{list-style-type:lower-roman}</style><div class="reflist"> <div class="mw-references-wrap mw-references-columns"><ol class="references"> <li id="cite_note-:0-1"><span class="mw-cite-backlink">^ <a href="#cite_ref-:0_1-0"><sup><i><b>a</b></i></sup></a> <a href="#cite_ref-:0_1-1"><sup><i><b>b</b></i></sup></a></span> <span class="reference-text"><style data-mw-deduplicate="TemplateStyles:r1238218222">.mw-parser-output cite.citation{font-style:inherit;word-wrap:break-word}.mw-parser-output .citation q{quotes:"\"""\"""'""'"}.mw-parser-output .citation:target{background-color:rgba(0,127,255,0.133)}.mw-parser-output .id-lock-free.id-lock-free a{background:url("//upload.wikimedia.org/wikipedia/commons/6/65/Lock-green.svg")right 0.1em center/9px no-repeat}.mw-parser-output .id-lock-limited.id-lock-limited a,.mw-parser-output .id-lock-registration.id-lock-registration a{background:url("//upload.wikimedia.org/wikipedia/commons/d/d6/Lock-gray-alt-2.svg")right 0.1em center/9px no-repeat}.mw-parser-output .id-lock-subscription.id-lock-subscription a{background:url("//upload.wikimedia.org/wikipedia/commons/a/aa/Lock-red-alt-2.svg")right 0.1em center/9px no-repeat}.mw-parser-output .cs1-ws-icon a{background:url("//upload.wikimedia.org/wikipedia/commons/4/4c/Wikisource-logo.svg")right 0.1em center/12px no-repeat}body:not(.skin-timeless):not(.skin-minerva) .mw-parser-output .id-lock-free a,body:not(.skin-timeless):not(.skin-minerva) .mw-parser-output .id-lock-limited a,body:not(.skin-timeless):not(.skin-minerva) .mw-parser-output .id-lock-registration a,body:not(.skin-timeless):not(.skin-minerva) .mw-parser-output .id-lock-subscription a,body:not(.skin-timeless):not(.skin-minerva) .mw-parser-output .cs1-ws-icon a{background-size:contain;padding:0 1em 0 0}.mw-parser-output .cs1-code{color:inherit;background:inherit;border:none;padding:inherit}.mw-parser-output .cs1-hidden-error{display:none;color:var(--color-error,#d33)}.mw-parser-output .cs1-visible-error{color:var(--color-error,#d33)}.mw-parser-output .cs1-maint{display:none;color:#085;margin-left:0.3em}.mw-parser-output .cs1-kern-left{padding-left:0.2em}.mw-parser-output .cs1-kern-right{padding-right:0.2em}.mw-parser-output .citation .mw-selflink{font-weight:inherit}@media screen{.mw-parser-output .cs1-format{font-size:95%}html.skin-theme-clientpref-night .mw-parser-output .cs1-maint{color:#18911f}}@media screen and (prefers-color-scheme:dark){html.skin-theme-clientpref-os .mw-parser-output .cs1-maint{color:#18911f}}</style><cite class="citation web cs1"><a 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