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Custom Services – Ardigen.com
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animation: uk-animation-slide-top"> <div class="container"> <div class="subheader__wrapper"> <ul class="subheader__mainlist"> <li class="subheader__mainlist-item turquoise"> <span>Custom Services</span> </li> </ul> <ul class="subheader__list turquoise"> <li class="subheader__list-item"> <a href="#services" uk-scroll>Our services</a> </li> <li class="subheader__list-item"> <a href="#how-work" uk-scroll>How we work</a> </li> <li class="subheader__list-item"> <a href="#know-us" uk-scroll>Know us better</a> </li> <li class="subheader__list-item"> <a href="#contact" uk-scroll>Contact</a> </li> </ul> </div> </div> </div> <div class="platforms-header turquoise"> <div class="platforms-header__bg-image"> <picture> <source srcset="https://ardigen.com/wp-content/uploads/2023/01/2560x1093_okladka_1.jpg, https://ardigen.com/wp-content/uploads/2023/01/2560x1093_okladka_1.jpg 2x" media="(min-width: 1366px)"> <source srcset="https://ardigen.com/wp-content/uploads/2023/01/2560x1093_okladka_1-1920x0-c-default.jpg, https://ardigen.com/wp-content/uploads/2023/01/2560x1093_okladka_1-2560x0-c-default.jpg 2x" media="(min-width: 1281px)"> <source srcset="https://ardigen.com/wp-content/uploads/2023/01/2560x1093_okladka_1-1920x0-c-default.jpg, https://ardigen.com/wp-content/uploads/2023/01/2560x1093_okladka_1-2560x0-c-default.jpg 2x" media="(min-width: 1281px)"> <!-- 1920px image!--> <source srcset="https://ardigen.com/wp-content/uploads/2023/01/2560x1093_okladka_1-1280x0-c-default.jpg, https://ardigen.com/wp-content/uploads/2023/01/2560x1093_okladka_1-1920x0-c-default.jpg 2x" media="(min-width: 981px)"> <!-- 1280px !--> <source srcset="https://ardigen.com/wp-content/uploads/2023/01/2560x1093_okladka_1-980x1280-c-center.jpg, https://ardigen.com/wp-content/uploads/2023/01/2560x1093_okladka_1-1280x0-c-default.jpg 2x" media="(min-width: 415px)"> <!-- 980px image!--> <img srcset="https://ardigen.com/wp-content/uploads/2022/01/Mobile_Immunologia_400x1000.jpg" alt=""> <!-- 414px image!--> </picture> </div> <div class="container"> <div class="platforms-header__content"> <h1 class="title-with-underline" uk-scrollspy="cls:uk-animation-slide-top;">Custom Services</h1> <span class="platforms-header__subtitle" uk-scrollspy="cls:uk-animation-slide-top;delay: 100"><strong>Bioinformatics Analysis & Drug Discovery</strong> in the era of Artificial Intelligence</span> <div class="platforms-header__desc" uk-scrollspy="cls:uk-animation-slide-bottom;delay: 200"><p>Our team bring together scientists and engineers with diverse skill sets, ranging from biology and chemistry to statistics and machine learning. We work with both small startups and big pharmas to leverage digital power in order to enable the development of new therapies. We contribute to the entire drug discovery process, from target identification and validation, to compound design and clinical trials. We make bioinformatic workflows and software with human-readable code, as well as machine learning models that “understand” biological data and provide cutting-edge solutions for Precision Medicine.</p> </div> <span class="platforms-header__name" uk-scrollspy="cls:uk-animation-slide-bottom;delay: 500">Łukasz Nowak</span> <span class="platforms-header__position" uk-scrollspy="cls:uk-animation-slide-bottom;delay: 600">Chief Operating Officer</span> </div> </div> <div class="arrow-structure turquoise"> <span class="arrow-structure-left"> </span> <span class="arrow-structure-right"> </span> <a href="#identification" uk-scroll="duration: 400"> <img src="/wp-content/themes/ardigen/assets/svg/arrow_scroll_down.svg" alt="#"> </a> </div></div> <section id="identification" class="identification section-padding-top"> <div class="container identification__container"> <h2 class="title-with-underline violet-mint" uk-scrollspy="cls: uk-animation-slide-right;">Ardigen enhances <span>Drug Development</span></h2> <span class="subtitle violet-mint" uk-scrollspy="cls: uk-animation-slide-right;">From target identification to clinical trials</span> <div class="identification__wrapper"> <div class="identification__row"> <div class="identification__left-col" uk-scrollspy="cls: uk-animation-slide-bottom;"> <div class="identification__circle"> <img src="https://ardigen.com/wp-content/uploads/2021/05/Group-2495.svg" alt="" class="identification__circle-icon"> </div> <span class="identification__border"></span> </div> <div class="identification__right-col" uk-scrollspy="cls: uk-animation-slide-right;"> <p class="identification__row-title">Target identification</p> <div class="identification__row-desc"><ul> <li>Data mining for target identification</li> <li>Dimensionality reduction and clustering in single-cell analysis</li> <li>Identification of genetic and epigenetic variability</li> <li>Natural Language Processing for information retrieval</li> <li>Profiling of gene expression, protein, and metabolite abundances</li> <li>Computer Vision for medical image analysis</li> <li>Identification of protein-DNA interaction sites</li> <li>Identification of off-target binding sites</li> <li>Prediction of protein-protein interaction sites</li> <li>Prediction of similarities in drug effect and mode of action</li> <li>Machine Learning-based binding pocket search</li> </ul> </div> </div> </div> <div class="identification__row"> <div class="identification__left-col" uk-scrollspy="cls: uk-animation-slide-bottom;"> <div class="identification__circle"> <img src="https://ardigen.com/wp-content/uploads/2021/05/Group-2496.svg" alt="" class="identification__circle-icon"> </div> <span class="identification__border"></span> </div> <div class="identification__right-col" uk-scrollspy="cls: uk-animation-slide-right;"> <p class="identification__row-title">Target Validation</p> <div class="identification__row-desc"><ul> <li>Computational methods for the creation of KO/KD/KI</li> <li>Computational methods for the creation of disease models</li> <li><em>In silico</em> prediction of siRNA acting site</li> <li><em>In silico</em> prediction of sgRNA (CRISPR) acting site</li> <li>Genetic screen perturbation analysis</li> </ul> </div> </div> </div> <div class="identification__row"> <div class="identification__left-col" uk-scrollspy="cls: uk-animation-slide-bottom;"> <div class="identification__circle"> <img src="https://ardigen.com/wp-content/uploads/2021/05/Group-2497.svg" alt="" class="identification__circle-icon"> </div> <span class="identification__border"></span> </div> <div class="identification__right-col" uk-scrollspy="cls: uk-animation-slide-right;"> <p class="identification__row-title">Hit generation</p> <div class="identification__row-desc"><p> </p> <ul> <li>Machine Learning-based virtual screening</li> <li>Computer Vision for high-content screening</li> <li>Drug repurposing</li> <li>RNAi-based therapeutics</li> </ul> </div> </div> </div> <div class="identification__row"> <div class="identification__left-col" uk-scrollspy="cls: uk-animation-slide-bottom;"> <div class="identification__circle"> <img src="https://ardigen.com/wp-content/uploads/2021/05/Group-3040.svg" alt="" class="identification__circle-icon"> </div> <span class="identification__border"></span> </div> <div class="identification__right-col" uk-scrollspy="cls: uk-animation-slide-right;"> <p class="identification__row-title">Hit to Lead optimization</p> <div class="identification__row-desc"><ul> <li>Peptide structure modelling and optimization</li> <li>Prediction of druggability</li> <li>Deep learning generative models for compound design</li> <li>Machine Learning-based prioritization of molecules</li> <li>Property and affinity prediction</li> <li>Prediction of ADME/T properties</li> <li>Prediction of protein properties</li> <li>Protein optimization</li> </ul> </div> </div> </div> <div class="identification__row"> <div class="identification__left-col" uk-scrollspy="cls: uk-animation-slide-bottom;"> <div class="identification__circle"> <img src="https://ardigen.com/wp-content/uploads/2021/05/Group-2502.svg" alt="" class="identification__circle-icon"> </div> <span class="identification__border"></span> </div> <div class="identification__right-col" uk-scrollspy="cls: uk-animation-slide-right;"> <p class="identification__row-title">Preclinical</p> <div class="identification__row-desc"><ul> <li>Prediction of toxicity including immunotoxicity</li> <li>Design of CDx for clinical trials</li> <li>AI-based scoring of whole slide biopsies</li> <li>Evaluation of transcriptome profiles in preclinical models</li> <li>Multi-omic data integration from preclinical studies</li> </ul> </div> </div> </div> <div class="identification__row"> <div class="identification__left-col" uk-scrollspy="cls: uk-animation-slide-bottom;"> <div class="identification__circle"> <img src="https://ardigen.com/wp-content/uploads/2021/05/Group-2501.svg" alt="" class="identification__circle-icon"> </div> </div> <div class="identification__right-col" uk-scrollspy="cls: uk-animation-slide-right;"> <p class="identification__row-title">Clinical Trials</p> <div class="identification__row-desc"><ul> <li>Biomarker-based patient stratification <span style="font-weight: 400;">and survival analysis</span></li> <li>Statistical inference on experimental data</li> <li>Computer Vision for medical image analysis</li> <li><span style="font-weight: 400;">Prediction, monitoring, and analysis of treatment response</span></li> <li>Biomarker Discovery,<span style="font-weight: 400;"> including on multi-omics datasets</span></li> </ul> </div> </div> </div> </div> </div> </section> <section id="services" class="learn-more"> <picture class="learn-more__picture"> <source srcset="https://ardigen.com/wp-content/uploads/2022/01/Nowy-projekt-12-1920x0-c-default.png, https://ardigen.com/wp-content/uploads/2022/01/Nowy-projekt-12-2560x0-c-default.png 2x" media="(min-width: 1281px)"> <source srcset="https://ardigen.com/wp-content/uploads/2022/01/Nowy-projekt-12-1280x0-c-default.png, https://ardigen.com/wp-content/uploads/2022/01/Nowy-projekt-12-1920x0-c-default.png 2x" media="(min-width: 981px)"> <source srcset="https://ardigen.com/wp-content/uploads/2022/01/Nowy-projekt-12-980x1280-c-center.png, https://ardigen.com/wp-content/uploads/2022/01/Nowy-projekt-12-1280x0-c-default.png 2x" media="(min-width: 415px)"> <img class="learn-more__img" srcset="https://ardigen.com/wp-content/uploads/2022/01/Nowy-projekt-12-414x830-c-center.png, https://ardigen.com/wp-content/uploads/2022/01/Nowy-projekt-12-828x0-c-default.png 2x" alt="https://ardigen.com/wp-content/uploads/2022/01/Nowy-projekt-12.png"> </picture> <div class="container learn-more__container"> <div class="learn-more__content"> <h1 class="learn-more__title title-with-underline" uk-scrollspy="cls: uk-animation-slide-right;">Discover Our Cutting-Edge Services <span> </br> and Accelerate Your Drug Discovery Process</span> </h1> <div class="learn-more__desc" uk-scrollspy="cls: uk-animation-slide-right;"><p>Our power lies in the mix of three digital skills: bioinformatics, AI & Data Science and Software Engineering. Read more about our skills and projects.</p> </div> </div> <div class="learn-more__row" uk-scrollspy="cls: uk-animation-slide-bottom;"> <p class="learn-more__column-title learn-more__column-title--1"> </p> <div class="learn-more__item learn-more__item--1"> <button class="learn-more__box" data-hc-control="11"> <img src="https://ardigen.com/wp-content/uploads/2021/05/l-1.svg" alt="" class="learn-more__box-icon"> <span class="learn-more__box-title">Bioinformatics Services</span> <div class="learn-more__box-btn"> <span class="learn-more__box-btn--more">more</span> <span class="learn-more__box-btn--less">less</span> </div> </button> <div class="learn-more__accordion" data-hc-content="11"> <div class="learn-more__accordion-content"> <div class="container"> <p>Bioinformatics analyses share common workflow that allows to abstract from technicalities of raw data towards specific biological insights.</p> <p>At each step technical expertise, diligence and attention to quality is required. Depending on your data, we can conduct a variety of analyses at different levels of detail to suit your specific research needs.</p> <ul> <li> <h4>Apps and Reports</h4> </li> </ul> <p>An image is worth a thousand words, and relevant, explorable data can be worth billions. Explore your data, results and analyses in detailed reports and apps with revealing visualizations.</p> <ul> <li> <h4>AI Models</h4> </li> </ul> <p>Advanced machine learning models help to leverage the wealth of data in biology. Meaningful application of AI models in bioinformatics demands expertise you can find with us.</p> <ul> <li> <h4>Data Pipelines</h4> </li> </ul> <p>The majority of published scientific research is irreproducible in its full form. Data processing pipelines enable the requisite reproducibility application to large data.</p> <p><a class="btn btn__default" style="margin-top: 15px;" href="https://eu1.hubs.ly/H06NM6k0" type="button">See the brochure</a></p> </div> </div> </div> </div> <div class="learn-more__item learn-more__item--2"> <button class="learn-more__box" data-hc-control="12"> <img src="https://ardigen.com/wp-content/uploads/2021/05/l-2.svg" alt="" class="learn-more__box-icon"> <span class="learn-more__box-title">AI-integrated Cheminformatics</span> <div class="learn-more__box-btn"> <span class="learn-more__box-btn--more">more</span> <span class="learn-more__box-btn--less">less</span> </div> </button> <div class="learn-more__accordion" data-hc-content="12"> <div class="learn-more__accordion-content"> <div class="container"> <p>Ardigen’s services focused on small molecules integrate the power and efficiency of AI and ML with the accuracy and precision of Computer-Aided Drug Design (CADD) techniques. From computational chemistry and molecular modeling to rational drug design, we turn data into discoveries.</p> <p> </p> <p>Why partner with us:</p> <ul> <li>INTEGRATED EXPERTISE: We combine machine learning proficiency with biology and chemistry expertise and 9+ years of experience on the market to provide relevant scientific value.</li> <li>YOUR DATA, YOUR INSIGHTS: You gain complete ownership of delivered molecules proposed during our collaboration.</li> <li>TRANSPARENCY IN ANALYSIS: We prioritize clarity and interpretability of our models, providing you with the understanding necessary to make informed decisions.</li> </ul> <p><a class="btn btn__default" style="margin-top: 15px;" href="https://eu1.hubs.ly/H06NMck0" type="button">See the brochure</a></p> </div> </div> </div> </div> <p class="learn-more__column-title learn-more__column-title--2"> </p> <div class="learn-more__item learn-more__item--1"> <button class="learn-more__box" data-hc-control="21"> <img src="https://ardigen.com/wp-content/uploads/2021/05/l-8.svg" alt="" class="learn-more__box-icon"> <span class="learn-more__box-title">AI and ML Services</span> <div class="learn-more__box-btn"> <span class="learn-more__box-btn--more">more</span> <span class="learn-more__box-btn--less">less</span> </div> </button> <div class="learn-more__accordion" data-hc-content="21"> <div class="learn-more__accordion-content"> <div class="container"> <p>We help you to discover value in your data by applying our tailored AI methods, automate the workflow and make it usable at scale.</p> <ul> <li> <h4>Data</h4> </li> </ul> <p><span style="font-weight: 400;">We are experts with data modalities critical for life science, laying a robust foundation for model building and leveraging synergies.</span></p> <ul> <li> <h4>Model</h4> </li> </ul> <p><span style="font-weight: 400;">Our team designs, tunes, and validates algorithms, achieving remarkable improvements in pattern identification and predictive accuracy.</span></p> <ul> <li> <h4><strong>Use at scale</strong></h4> </li> </ul> <p><span style="font-weight: 400;">By implementing MLOps tools, we ensure that your models are practical and scalable solutions for real-world applications.</span></p> <p><a class="btn btn__default" style="margin-top: 15px;" href="https://eu1.hubs.ly/H06NM3W0" type="button">See the brochure</a></p> </div> </div> </div> </div> <div class="learn-more__item learn-more__item--2"> <button class="learn-more__box" data-hc-control="22"> <img src="https://ardigen.com/wp-content/uploads/2021/05/l-6.svg" alt="" class="learn-more__box-icon"> <span class="learn-more__box-title">Computer Vision</span> <div class="learn-more__box-btn"> <span class="learn-more__box-btn--more">more</span> <span class="learn-more__box-btn--less">less</span> </div> </button> <div class="learn-more__accordion" data-hc-content="22"> <div class="learn-more__accordion-content"> <div class="container"> <p>Our SA-AbMILP model transforms the way we assess disease activity, providing a detailed analysis of biopsy samples.</p> <p> </p> <h4>Histopathology Image Analysis:</h4> <ul> <li>assessment of histologic remission</li> <li>batch effects correction</li> <li>responder/non-responder classification</li> </ul> <h4>Radiology Image Analysis</h4> <ul> <li>segmentation</li> <li>radiomics</li> <li>biomarker discovery</li> </ul> <h4>Microscope Image Analysis:</h4> <ul> <li>custom microscopy image analysis</li> <li>cell segmentation and characterization</li> <li>quality evaluation</li> </ul> <h4>Microarrays Image Analysis:</h4> <ul> <li>image registration</li> <li>grid placement and feature extraction</li> <li>spot detection</li> </ul> <p><a class="btn btn__default" style="margin-top: 15px;" href="https://eu1.hubs.ly/H06NMdf0" type="button">See the brochure</a></p> </div> </div> </div> </div> <p class="learn-more__column-title learn-more__column-title--3"> </p> <div class="learn-more__item learn-more__item--1"> <button class="learn-more__box" data-hc-control="31"> <img src="https://ardigen.com/wp-content/uploads/2021/05/l-9.svg" alt="" class="learn-more__box-icon"> <span class="learn-more__box-title">Data Infrastructure Services</span> <div class="learn-more__box-btn"> <span class="learn-more__box-btn--more">more</span> <span class="learn-more__box-btn--less">less</span> </div> </button> <div class="learn-more__accordion" data-hc-content="31"> <div class="learn-more__accordion-content"> <div class="container"> <p><span style="font-weight: 400;">Drawing from our past experiences, we have developed a concept of reference architecture to visually guide and simplify discussions about this complex topic. It helps to assess the digital maturity of teams and serves as a reference map for planning new projects.</span></p> <ul> <li>Data Processing and Visualisation</li> <li>Data Governance and Management</li> <li>Cloud Services</li> </ul> <p><a class="btn btn__default" style="margin-top: 15px;" href="https://eu1.hubs.ly/H06NMdl0" type="button">See the brochure</a></p> </div> </div> </div> </div> <div class="learn-more__item learn-more__item--2"> <button class="learn-more__box" data-hc-control="32"> <img src="https://ardigen.com/wp-content/uploads/2021/05/l-10.svg" alt="" class="learn-more__box-icon"> <span class="learn-more__box-title">Bioinformatics Workflows</span> <div class="learn-more__box-btn"> <span class="learn-more__box-btn--more">more</span> <span class="learn-more__box-btn--less">less</span> </div> </button> <div class="learn-more__accordion" data-hc-content="32"> <div class="learn-more__accordion-content"> <div class="container"> <p><span style="font-weight: 400;">Harnessing the power of automation, scalability and customizability, we’re streamlining how you process and analyze your data. At any stage of your<br /> drug discovery process, we support the transformation of raw data into valuable scientific insights. With our knowledge and expertise, we follow a structured and efficient path from data acquisition to actionable knowledge in research and analysis.</span></p> <p>Why partner with us:</p> <p>INTERDISCIPLINARY EXPERTISE: Our cross-functional teams of software developers, bioinformaticians, and scientists deliver integrated solutions.<br /> GLOBAL COLLABORATIVE NETWORK: Extending capabilities through strategic partnerships with industry leaders like Seqera Labs (Nextflow creators and developers) and AWS.<br /> PROVEN EXCELLENCE: With 9+ years in the field, 400+ successful projects, and a growing team of 20+ Nextflow developers, we set the industry standard.<br /> COMMUNITY CONTRIBUTORS: Active participation in nf-core and OpenPipelines communities, demonstrating our commitment to the advancement of the field.</p> <p><a class="btn btn__default" style="margin-top: 15px;" href="https://eu1.hubs.ly/H06PnkK0" type="button">See the brochure</a></p> </div> </div> </div> </div> </div> <a href="https://eu1.hubs.ly/H06NMdD0" class="learn-more__btn" uk-scrollspy="cls: uk-animation-slide-bottom;"> <span class="learn-more__btn-name">Download our leaflet to learn more</span> <span class="learn-more__btn-link">Read more</span> </a> </div> </section> <section id="how-work" class="how-work section-padding-top"> <div class="container how-work__container"> <h2 class="title-with-underline violet-mint" uk-scrollspy="cls: uk-animation-slide-right;">Ardigen Flexible Engagement Models</h2> <span class="subtitle violet-mint" uk-scrollspy="cls: uk-animation-slide-right;">How do we work?</span> <div class="text-content" uk-scrollspy="cls: uk-animation-slide-right;"><ul> <li>We focus on partnering, have a collaborative attitude, and always aiming to establish long-term relationships with our clients</li> <li>Client satisfaction and quality of delivery are our priorities</li> <li>We use the Agile approach to projects, ensuring efficient, transparent, and flexible delivery</li> <li>Our delivery team is supported by Excellence Centers and leverages our tools and methodologies to accelerate delivery</li> </ul> </div> <div class="border-box mint"> <div class="border-box__container" uk-scrollspy="cls: uk-animation-slide-bottom;"> <h3 class="border-box__title violet-mint">How do we collaborate with clients?</h3> <img src="https://ardigen.com/wp-content/uploads/2023/01/A916bbpvc_is1nva_5iw-01.png" alt="img" class="how-work__below-img"/> </div> </div> <div class="how-work__below" uk-scrollspy="cls: uk-animation-slide-bottom;"> <img src="https://ardigen.com/wp-content/uploads/2023/01/A94iexjl_5wxjmr_988-01.png" alt="" class="how-work__below-img"> </div> </div> </section> <section class="trusted"> <div class="container trusted__container"> <h2 class="trusted__title">They trusted us</h2> <div class="main-map-content trusted__slider main-map"> <span class="main-map-quote" style="background-image: url('/wp-content/themes/ardigen/assets/svg/ico_quote.svg')"></span> <div class="slider-container"> <div class="slider uk-slider-items"> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="" alt=""> </div> <span class="slide-content-info-person">Adrianto Wirawan</span> <span class="slide-content-info-position"> <span class="text-turquoise">Director of Bioinformatics Engineering </span> <span class="slide-content-info-company">Genomics England</span> </span> <span class="slide-content-info-address">United Kingdom</span> </div> <div class="slide-content-desc"> <p><span style="font-weight: 400;">“Ardigen provided several teams of high-calibre, multi-disciplined, and proactive individuals to help Genomics England accelerate the transformation of population-scale bioinformatics pipelines. We are delighted with the collaboration and the outstanding results they have delivered. The bioinformatics and software engineering services they provided have helped us reduce project timelines and accelerate our development at a reasonable cost.” </span></p> </div> </div> </div> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="" alt=""> </div> <span class="slide-content-info-person">Martina Kluenemann, PhD</span> <span class="slide-content-info-position"> <span class="text-turquoise">Research Manager for Nutrition Immunology and Physiology</span> <span class="slide-content-info-company">Evonik Operations GmbH</span> </span> <span class="slide-content-info-address">Hanau, Germany</span> </div> <div class="slide-content-desc"> <p><span style="font-weight: 400;">“Ardigen was instrumental in streamlining our processes with microbiome custom software development. Their deep expertise and unwavering commitment to the project led to significant and measurable improvements in the efficiency and quality of our research efforts. We highly recommend Ardigen for their outstanding and collaborative partnership in facilitating our research project. We are thrilled with the results and are exploring ways to continue our partnership.”</span></p> </div> </div> </div> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="https://ardigen.com/wp-content/uploads/2021/03/New-Project-1-e1615284710890.png" alt=""> </div> <span class="slide-content-info-person">Gregg Espiritu Santo</span> <span class="slide-content-info-position"> <span class="text-turquoise">Sr. Director of Informatics Systems</span> <span class="slide-content-info-company">Atreca, Inc</span> </span> <span class="slide-content-info-address">South San Francisco, CA</span> </div> <div class="slide-content-desc"> <p>At Atreca, Ardigen has established themselves as a comprehensive service providing a multi-disciplined team that manages all aspects of our Informatics needs. We have been impressed with their flexibility to grow teams and add new specializations on-demand at a reasonable cost.</p> </div> </div> </div> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="" alt=""> </div> <span class="slide-content-info-person"> Martha Carlin</span> <span class="slide-content-info-position"> <span class="text-turquoise">CEO The BioCollective</span> <span class="slide-content-info-company">The BioCollective</span> </span> <span class="slide-content-info-address">Denver, CO, USA</span> </div> <div class="slide-content-desc"> <p>“Ardigen hit a grand slam for us! Their expertise and mastery of microbiome data mining and predictive analytics found important and unique biomarkers in our data where others had failed. The team was amazing and I would work with them again in a heartbeat.”</p> </div> </div> </div> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="" alt=""> </div> <span class="slide-content-info-person">Michael Schelle</span> <span class="slide-content-info-position"> <span class="text-turquoise">Vice President Research and Operations</span> <span class="slide-content-info-company">Acrigen Biosciences</span> </span> <span class="slide-content-info-address">Berkeley, CA, USA</span> </div> <div class="slide-content-desc"> <p><span style="font-weight: 400;">“Ardigen has been a great bioinformatics partner for Acrigen Biosciences. They were able to develop a custom bioinformatics workflow and wrap it in a web application, allowing easy access for our scientists.”</span></p> </div> </div> </div> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="https://ardigen.com/wp-content/uploads/2021/02/400CVC.png" alt=""> </div> <span class="slide-content-info-person">Robert Feldman</span> <span class="slide-content-info-position"> <span class="text-turquoise">CEO and Co-founder</span> <span class="slide-content-info-company">COVID-19 Vaccine Corporation (CVC)</span> </span> <span class="slide-content-info-address">Auckland City, New Zealand</span> </div> <div class="slide-content-desc"> <p><span style="font-weight: 400;">“CVC is excited to be working with Ardigen who are at the forefront of T-cell epitope design. The collaboration </span><span style="font-weight: 400;">gives us the best chance of our product inducing an effective T-cell response against SARS-Cov-2.”</span></p> </div> </div> </div> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="https://ardigen.com/wp-content/uploads/2021/02/400amidebio.png" alt=""> </div> <span class="slide-content-info-person">Pawel Fludzinski, PhD </span> <span class="slide-content-info-position"> <span class="text-turquoise">CEO</span> <span class="slide-content-info-company">AmideBio</span> </span> <span class="slide-content-info-address">Louisville, CO, USA</span> </div> <div class="slide-content-desc"> <p><span style="font-weight: 400;">“The PRISM pipeline has dramatically improved our discovery efforts and uncovered new unexpected lead candidates. In addition, the deployment on cloud computing resources has allowed our discovery team to explore possibilities that would be untenable under traditional settings.”</span></p> </div> </div> </div> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="https://ardigen.com/wp-content/uploads/2021/02/400corcept.png" alt=""> </div> <span class="slide-content-info-person">Andy Greenstein</span> <span class="slide-content-info-position"> <span class="text-turquoise">Director, Translational Science </span> <span class="slide-content-info-company">Corcept Therapeutics</span> </span> <span class="slide-content-info-address">Menlo Park, CA, USA</span> </div> <div class="slide-content-desc"> <p><span style="font-weight: 400;">“Working with Ardigen has enabled us to apply precision bioinformatics and machine learning to our most pressing problems.”</span></p> </div> </div> </div> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="https://ardigen.com/wp-content/uploads/2021/02/targovax1.png" alt=""> </div> <span class="slide-content-info-person">Lukasz Kuryk, PhD</span> <span class="slide-content-info-position"> <span class="text-turquoise">Director, Clinical Science </span> <span class="slide-content-info-company">Targovax</span> </span> <span class="slide-content-info-address">Oslo, Norway</span> </div> <div class="slide-content-desc"> <p><span style="font-weight: 400;">“We at Targovax have been impressed and delighted with Ardigen’s expertise, professional attitude, attention to details and flexibility. We also highly value their individual approach when working with clients, and last but not least, their result delivery is on time. Generated results represent a key component of our clinical pipeline readouts.”</span></p> </div> </div> </div> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="https://ardigen.com/wp-content/uploads/2018/05/logo_distributed_bio-3.png" alt=""> </div> <span class="slide-content-info-person">Chris Smith</span> <span class="slide-content-info-position"> <span class="text-turquoise">CTO</span> <span class="slide-content-info-company">Distributed Bio</span> </span> <span class="slide-content-info-address">South San Francisco, USA</span> </div> <div class="slide-content-desc"> <p>“Our strategic partnership with Ardigen has enabled us to not only keep pace with, but vastly exceed the expectations of our diverse and rapidly expanding user base of over 40 major pharmas and biotechs.”</p> </div> </div> </div> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="https://ardigen.com/wp-content/uploads/2018/05/logo_epibiome-2.png" alt=""> </div> <span class="slide-content-info-person">Dr. Bruno Marchon</span> <span class="slide-content-info-position"> <span class="text-turquoise">CTO</span> <span class="slide-content-info-company">EpiBiome</span> </span> <span class="slide-content-info-address">South San Francisco, USA</span> </div> <div class="slide-content-desc"> <p>“We’re extremely happy with Ardigen’s level of responsiveness, attention to details and overall technical insight.”</p> </div> </div> </div> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="https://ardigen.com/wp-content/uploads/2018/05/5_circuit_logo_testim-1.png" alt=""> </div> <span class="slide-content-info-person">Dr. Thomas Portmann</span> <span class="slide-content-info-position"> <span class="text-turquoise">Director of Neurobiology and Transcriptomics</span> <span class="slide-content-info-company">Circuit Therapeutics</span> </span> <span class="slide-content-info-address">Menlo Park, CA, USA</span> </div> <div class="slide-content-desc"> <p>“Ardigen’s deep understanding of the complexities of molecular biology work flows and data has made them our partner of choice.”</p> </div> </div> </div> <div class="slide"> <div class="slide-content"> <div class="slide-content-info"> <div> <img src="https://ardigen.com/wp-content/uploads/2018/05/logo_healthtell-2.png" alt=""> </div> <span class="slide-content-info-person">Dr. Michael W. Rowe</span> <span class="slide-content-info-position"> <span class="text-turquoise">Director of Data Sciences</span> <span class="slide-content-info-company">HeathTell</span> </span> <span class="slide-content-info-address">San Ramon, CA, USA</span> </div> <div class="slide-content-desc"> <p>“I’ve been really impressed with their expertise and communication skills. When we give them an analysis task, they go beyond what we’ve asked for and suggest and test new methods.”</p> </div> </div> </div> </div> <div class="slider-controls"> <a class="slider-controls-arrow" href="#" uk-slider-item="previous"> <img src="/wp-content/themes/ardigen/assets/svg/ico_slider_left.svg" alt=""> </a> <ul class="uk-slider-nav uk-dotnav slider-controls-dots"></ul> <a class="slider-controls-arrow" href="#" uk-slider-item="next"> <img src="/wp-content/themes/ardigen/assets/svg/ico_slider_right.svg" alt=""> </a> </div> </div> </div> </div> </section> <section id="counters" class="know-us"> <picture class="know-us__picture"> <source srcset="https://ardigen.com/wp-content/uploads/2021/11/Kolaz-ze-zdjeciami_1-1-1920x0-c-default.jpg, https://ardigen.com/wp-content/uploads/2021/11/Kolaz-ze-zdjeciami_1-1-2560x0-c-default.jpg 2x" media="(min-width: 1281px)"> <source srcset="https://ardigen.com/wp-content/uploads/2021/11/Kolaz-ze-zdjeciami_1-1-1280x0-c-default.jpg, 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alt="Webinar: Computer Vision for Precision Medicine"> </div> <div class="flip-card-front"> <span class="flip-card__date">30 August 2022</span> <span class="flip-card__title">Webinar: Computer Vision for Precision Medicine</span> <a href="https://ai.ardigen.com/webinar_computer_vision" class="btn btn__with-arrow btn__default">Watch the webinar</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card auto-height" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 800"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2021/06/genedigital.png" alt="Conference presentation: Gene Regulation Platform"> </div> <div class="flip-card-front"> <span class="flip-card__date">29 April 2021</span> <span class="flip-card__title">Conference presentation: Gene Regulation Platform</span> <a href="https://www.youtube.com/watch?v=PM4M1r2Z31w" class="btn btn__with-arrow btn__default">Watch the movie</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card auto-height" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 1000"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2021/06/biomedicalweb1.png" alt="Taming terabytes – life beyond text files in Life Science research"> </div> <div class="flip-card-front"> <span class="flip-card__date">12 November 2020</span> <span class="flip-card__title">Taming terabytes – life beyond text files in Life Science research</span> <a href="https://www.youtube.com/watch?v=ir65oFBfiaw" class="btn btn__with-arrow btn__default">Watch the webinar</a> </div> </div> </div> <!-- End Card Flip --> </div> </div> <div class="cards__button-wrapper"> <button href="#toggle-animation" class="btn btn__with-arrow btn__more" type="button" uk-toggle="target: #toggle-animation; animation: uk-animation-fade" data-less="Less" data-more="More">More</button> </div> </div> </section> <section class="section-padding-sm cards"> <div class="container"> <h3 class="section-title-sm" uk-scrollspy="cls:uk-animation-slide-bottom;offset-top:-200;"><b>Read our articles:</b></h3> <div class="cards__wrapper"> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 200"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2023/12/1200x628_Blog_AI-Brain-Slice-Segmentation-370x200-c-center.jpg" alt="Blog Article: AI Brain Slice Segmentation - Innovative Solutions for Precision Diagnostics"> </div> <div class="flip-card-front"> <span class="flip-card__date">5 December 2023</span> <span class="flip-card__title">Blog Article: AI Brain Slice Segmentation - Innovative Solutions for Precision Diagnostics</span> <a href="https://ardigen.com/ai-brain-slice-segmentation-innovative-solutions-for-precision-diagnostics/" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the article</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 400"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2023/11/Untitled-design-min-370x200-c-center.png" alt="Blog Article: AI at the Forefront of Modern Radiology Analysis: Brain MRI Use Case"> </div> <div class="flip-card-front"> <span class="flip-card__date">7 November 2023</span> <span class="flip-card__title">Blog Article: AI at the Forefront of Modern Radiology Analysis: Brain MRI Use Case</span> <a href="https://ardigen.com/?post_type=post&p=15072" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the article</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 600"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2023/03/artykul-Kai2_1200x627-01-370x200-c-center.png" alt="Publication: Host Factors Associated with Gut Mycobiome Structure"> </div> <div class="flip-card-front"> <span class="flip-card__date">2 March 2023</span> <span class="flip-card__title">Publication: Host Factors Associated with Gut Mycobiome Structure</span> <a href="https://journals.asm.org/doi/10.1128/msystems.00986-22" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the article</a> </div> </div> </div> <!-- End Card Flip --> </div> <div id="toggle-animation-1" class="uk-card uk-card-default uk-card-body uk-margin-small" hidden aria-hidden="true"> <div class="cards__wrapper"> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 200"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2023/03/artykul-Dawida_1200x627-370x200-c-center.png" alt="Publication: ProtoMIL: Multiple Instance Learning with Prototypical Parts for Whole-Slide Image Classification"> </div> <div class="flip-card-front"> <span class="flip-card__date">2 February 2023</span> <span class="flip-card__title">Publication: ProtoMIL: Multiple Instance Learning with Prototypical Parts for Whole-Slide Image Classification</span> <a href="https://arxiv.org/abs/2108.10612" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the article</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 400"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2021/06/New-Project-3-370x200-c-center.png" alt="Publication: Kernel Self-Attention for Weakly-supervised Image Classification using Deep Multiple Instance Learning"> </div> <div class="flip-card-front"> <span class="flip-card__date">5 March 2021</span> <span class="flip-card__title">Publication: Kernel Self-Attention for Weakly-supervised Image Classification using Deep Multiple Instance Learning</span> <a href="https://arxiv.org/pdf/2005.12991.pdf" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the article</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 600"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2021/06/New-Project-4-370x200-c-center.png" alt="Publication: Comparison of Atom Representations in Graph Neural Networks for Molecular Property Prediction"> </div> <div class="flip-card-front"> <span class="flip-card__date">12 February 2021</span> <span class="flip-card__title">Publication: Comparison of Atom Representations in Graph Neural Networks for Molecular Property Prediction</span> <a href="https://arxiv.org/pdf/2012.04444.pdf" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the article</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 800"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2021/06/New-Project-5-370x200-c-center.png" alt="Publication: Mol-CycleGAN - a generative model for molecular optimization"> </div> <div class="flip-card-front"> <span class="flip-card__date">6 February 2021</span> <span class="flip-card__title">Publication: Mol-CycleGAN - a generative model for molecular optimization</span> <a href="https://arxiv.org/pdf/1902.02119.pdf" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the article</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 1000"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2021/06/New-Project-7-370x200-c-center.png" alt="Publication: ProtoPShare: Prototype Sharing for Interpretable Image Classification and Similarity Discovery"> </div> <div class="flip-card-front"> <span class="flip-card__date">29 November 2020</span> <span class="flip-card__title">Publication: ProtoPShare: Prototype Sharing for Interpretable Image Classification and Similarity Discovery</span> <a href="https://arxiv.org/pdf/2011.14340.pdf" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the article</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 1200"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2020/09/Alvaro_PRISM_1920x960-370x200-c-center.jpg" alt="Blog post: PRISM - a writing assistant for the language of proteins"> </div> <div class="flip-card-front"> <span class="flip-card__date">22 September 2020</span> <span class="flip-card__title">Blog post: PRISM - a writing assistant for the language of proteins</span> <a href="https://ardigen.com/prism-a-writing-assistant-for-the-language-of-proteins/" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the blog post</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 1400"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2021/06/New-Project-8-370x200-c-center.png" alt="Publication: Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics"> </div> <div class="flip-card-front"> <span class="flip-card__date">26 August 2020</span> <span class="flip-card__title">Publication: Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics</span> <a href="https://www.cell.com/action/showPdf?pii=S2405-4712%2820%2930242-8" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the article</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 1600"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2019/09/ardigen-blog-TESLA-1920x960px-370x200-c-center.jpg" alt="Blog Post: Leveraging biomarkers to bring the right treatment to the right patient"> </div> <div class="flip-card-front"> <span class="flip-card__date">23 July 2020</span> <span class="flip-card__title">Blog Post: Leveraging biomarkers to bring the right treatment to the right patient</span> <a href="https://ardigen.com/leveraging-biomarkers-to-bring-the-right-treatment-to-the-right-patient/" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the blog post</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 1800"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2021/06/New-Project-6-370x200-c-center.png" alt="Publication: Deep learning approach to describe and classify fungi microscopic images"> </div> <div class="flip-card-front"> <span class="flip-card__date">24 June 2020</span> <span class="flip-card__title">Publication: Deep learning approach to describe and classify fungi microscopic images</span> <a href="https://arxiv.org/pdf/2005.11772.pdf" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the article</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 2000"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2021/06/New-Project-10-370x200-c-center.png" alt="Poster: Suppression of tumor immune activity in adrenocortical carcinoma with excess glucocorticoid"> </div> <div class="flip-card-front"> <span class="flip-card__date">17 June 2020</span> <span class="flip-card__title">Poster: Suppression of tumor immune activity in adrenocortical carcinoma with excess glucocorticoid</span> <a href="https://ardigen.com/aacr-poster-final/" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">See the poster</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 2200"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2020/07/ardigen_Leveraging-biomarkers_1920x960px_tlo-370x200-c-center.jpg" alt="Blog post: Automated nucleus detection with deep learning"> </div> <div class="flip-card-front"> <span class="flip-card__date">6 June 2020</span> <span class="flip-card__title">Blog post: Automated nucleus detection with deep learning</span> <a href="https://ardigen.com/automated-nucleus-detection-with-deep-learning/" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the blog post</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 2400"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2021/02/500x800_TŁO_2-370x200-c-center.jpg" alt="Blog post: Fishing out hypotheses from a sea of data: how Ardigen’s AIKE helps scientists ask better questions"> </div> <div class="flip-card-front"> <span class="flip-card__date">1 June 2020</span> <span class="flip-card__title">Blog post: Fishing out hypotheses from a sea of data: how Ardigen’s AIKE helps scientists ask better questions</span> <a href="https://ardigen.com/fishing-out-hypotheses-from-a-sea-of-data-how-ardigens-aike-helps-scientists-ask-better-questions/" target="_blank" rel="nofollow" class="btn btn__with-arrow btn__readmore">Read the blog post</a> </div> </div> </div> <!-- End Card Flip --> <!-- Card Flip --> <div class="flip-card without-flip" uk-scrollspy="cls:uk-animation-slide-right-medium; delay: 2600"> <div class="flip-card-inner"> <div class="flip-card__image"> <img src="https://ardigen.com/wp-content/uploads/2021/06/New-Project-9-370x200-c-center.png" alt="Publication: Molecule-Augmented Attention Transformer"> </div> <div class="flip-card-front"> <span class="flip-card__date">2 May 2019</span> <span 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