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rapid release – Ensembl Blog

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By using the site you are agreeing to this as outlined in our <a href="https://www.ebi.ac.uk/data-protection/ensembl/privacy-notice" rel=""> Privacy Policy </a> </div> </aside> </div> </div> </div> <div id="primary" class="content-area col-lg-9" itemprop="mainContentOfPage"> <h1 class="page-title">Tag: <span>rapid release</span></h1> <div id="content" class="site-content" role="main"> <article itemscope itemtype="http://schema.org/Article" id="post-15780" class="post-15780 post type-post status-publish format-standard hentry category-01-release tag-ensembl tag-ensembl-genomes tag-rapid tag-rapid-release tag-release"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2024/11/14/we-will-be-freezing-ensembl-rapid-release/" title="Permalink to We have frozen Ensembl Rapid Release" rel="bookmark">We have frozen Ensembl Rapid Release</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2024/11/14/we-will-be-freezing-ensembl-rapid-release/" rel="bookmark"><time class="entry-date published" datetime="2024-11-14T16:40:07+00:00" itemprop="datepublished">14th November 2024</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/jrocha/" rel="author" itemprop="url"><span itemprop="name">Jorge Batista da Rocha</span></a></span><span class="sep">&middot;</span><span class="comments-link"><a href="https://www.ensembl.info/2024/11/14/we-will-be-freezing-ensembl-rapid-release/#respond" itemprop="discussionUrl">0 Comments</a></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>All Rapid Release data, including Release 65, has been uploaded into the new Ensembl Beta site. New genome data will only be released onto the <a href="https://beta.ensembl.org" data-type="link" data-id="https://beta.ensembl.org">Ensembl Beta site</a>.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2024/11/14/we-will-be-freezing-ensembl-rapid-release/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-14401" class="post-14401 post type-post status-publish format-standard hentry category-02-updates category-01-release category-uncategorised tag-ensembl tag-genomes tag-rapid-release tag-release"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2022/11/24/the-first-invertebrate-themed-ensembl-rapid-release-is-out/" title="Permalink to The first invertebrate-themed Ensembl Rapid Release is out!" rel="bookmark">The first invertebrate-themed Ensembl Rapid Release is out!</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2022/11/24/the-first-invertebrate-themed-ensembl-rapid-release-is-out/" rel="bookmark"><time class="entry-date published" datetime="2022-11-24T09:04:00+00:00" itemprop="datepublished">24th November 2022</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/lpmirabueno/" rel="author" itemprop="url"><span itemprop="name">Louisse Paola Mirabueno</span></a></span><span class="sep">&middot;</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on The first invertebrate-themed Ensembl Rapid Release is out!</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>We are pleased to announce that <a href="https://rapid.ensembl.org/index.html" target="_blank" rel="noreferrer noopener">Ensembl Rapid Release</a> 40 with 94 new genomes is now live! With Rapid Release 40, we also introduce the first of many invertebrate-themed Ensembl Rapid Releases. The inaugural theme has an emphasis on scientific advancements in global food security. We have added 21 agriculturally significant insect species, which include organisms viewed as priorities in the pursuit of boosting fundamental biological understanding and insights into biological control mechanisms, both indispensable to increase global food production and availability.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2022/11/24/the-first-invertebrate-themed-ensembl-rapid-release-is-out/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-14371" class="post-14371 post type-post status-publish format-standard hentry category-01-release tag-ftp tag-rapid tag-rapid-release"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2022/11/08/updates-to-the-ensembl-rapid-release-ftp-site/" title="Permalink to Updates to the Ensembl Rapid Release FTP site" rel="bookmark">Updates to the Ensembl Rapid Release FTP site</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2022/11/08/updates-to-the-ensembl-rapid-release-ftp-site/" rel="bookmark"><time class="entry-date published" datetime="2022-11-08T10:31:23+00:00" itemprop="datepublished">8th November 2022</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/bmoore/" rel="author" itemprop="url"><span itemprop="name">Ben (Outreach)</span></a></span><span class="sep">&middot;</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Updates to the Ensembl Rapid Release FTP site</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>The layout of the <a href="https://ftp.ensembl.org/pub/rapid-release/" target="_blank" rel="noreferrer noopener">Ensembl Raid Release FTP site</a> will be updated in Rapid Release version 40, due in November 2022.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2022/11/08/updates-to-the-ensembl-rapid-release-ftp-site/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-14008" class="post-14008 post type-post status-publish format-standard hentry category-02-updates category-01-release tag-ensembl tag-rapid-release tag-release"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2022/05/24/rapid-release-33-contains-species-annotated-via-braker2/" title="Permalink to Rapid Release 33 contains species annotated via BRAKER2" rel="bookmark">Rapid Release 33 contains species annotated via BRAKER2</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2022/05/24/rapid-release-33-contains-species-annotated-via-braker2/" rel="bookmark"><time class="entry-date published" datetime="2022-05-24T09:04:00+01:00" itemprop="datepublished">24th May 2022</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/aleena/" rel="author" itemprop="url"><span itemprop="name">Aleena Mushtaq</span></a></span><span class="sep">&middot;</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Rapid Release 33 contains species annotated via BRAKER2</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>Global biodiversity projects, including the <a rel="noreferrer noopener" href="https://www.darwintreeoflife.org/" data-type="URL" data-id="https://www.darwintreeoflife.org/" target="_blank">Darwin Tree of Life project</a>, are producing a large number of high-quality genome assemblies. At <a href="https://www.ensembl.org/index.html" data-type="URL" data-id="https://www.ensembl.org/index.html" target="_blank" rel="noreferrer noopener">Ensembl</a> our goal is to generate high quality, evidence-based gene annotations for all high-quality assemblies, using the latest software components to ensure a continued high standard of genome annotation, even when the available data are limited.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2022/05/24/rapid-release-33-contains-species-annotated-via-braker2/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-13743" class="post-13743 post type-post status-publish format-standard hentry category-02-updates tag-diamond tag-homologs tag-homologues tag-homology tag-rapid tag-rapid-release"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2022/01/12/homology-data-available-in-ensembl-rapid-release/" title="Permalink to Homology data available in Ensembl Rapid Release" rel="bookmark">Homology data available in Ensembl Rapid Release</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2022/01/12/homology-data-available-in-ensembl-rapid-release/" rel="bookmark"><time class="entry-date published" datetime="2022-01-12T10:16:18+00:00" itemprop="datepublished">12th January 2022</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/bmoore/" rel="author" itemprop="url"><span itemprop="name">Ben (Outreach)</span></a></span><span class="sep">&middot;</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Homology data available in Ensembl Rapid Release</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>The <a href="https://rapid.ensembl.org/index.html" target="_blank" rel="noreferrer noopener">Ensembl Rapid Release genome browser</a> now provides homology prediction for every available annotated genome.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2022/01/12/homology-data-available-in-ensembl-rapid-release/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-13716" class="post-13716 post type-post status-publish format-standard hentry category-02-updates category-01-release tag-darwin-tree-of-life tag-dtol tag-insects tag-rapid-release"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2021/12/17/146-new-insect-genomes-on-ensembl-rapid-release/" title="Permalink to 146 new insect genomes on Ensembl Rapid Release" rel="bookmark">146 new insect genomes on Ensembl Rapid Release</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2021/12/17/146-new-insect-genomes-on-ensembl-rapid-release/" rel="bookmark"><time class="entry-date published" datetime="2021-12-17T17:15:48+00:00" itemprop="datepublished">17th December 2021</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/michal-outreach/" rel="author" itemprop="url"><span itemprop="name">Michal Szpak</span></a></span><span class="sep">&middot;</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on 146 new insect genomes on Ensembl Rapid Release</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>The latest update to the Ensembl Rapid Release brought 146 winged insect genome assemblies covering 94 different species across Lepidoptera and Hymenoptera orders. The majority of these come from the Darwin Tree of Life project.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2021/12/17/146-new-insect-genomes-on-ensembl-rapid-release/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-13095" class="post-13095 post type-post status-publish format-standard hentry category-03-other tag-biomart tag-gene-tree tag-gene-trees tag-rapid-release"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2021/01/20/important-changes-of-data-availability-in-ensembl-gene-trees-and-biomart/" title="Permalink to Important changes of data availability in Ensembl gene trees and BioMart" rel="bookmark">Important changes of data availability in Ensembl gene trees and BioMart</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2021/01/20/important-changes-of-data-availability-in-ensembl-gene-trees-and-biomart/" rel="bookmark"><time class="entry-date published" datetime="2021-01-20T15:30:45+00:00" itemprop="datepublished">20th January 2021</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/bmoore/" rel="author" itemprop="url"><span itemprop="name">Ben (Outreach)</span></a></span><span class="sep">&middot;</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Important changes of data availability in Ensembl gene trees and BioMart</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>In Ensembl 103, and subsequent releases, we will be limiting the number of species represented in our <a href="http://www.ensembl.org/info/genome/compara/homology_method.html">gene trees</a> and the聽 <a href="https://www.ensembl.org/biomart/martview/">BioMart data export tool</a>. These changes are required to most effectively support our rapid growth in the number of available species.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2021/01/20/important-changes-of-data-availability-in-ensembl-gene-trees-and-biomart/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-12789" class="post-12789 post type-post status-publish format-standard hentry category-03-other tag-ensembl tag-ensembl-genomes tag-pre tag-pre-site tag-rapid-release"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2020/09/28/retirement-of-ensembl-pre-site/" title="Permalink to Retirement of Ensembl Pre! site" rel="bookmark">Retirement of Ensembl Pre! site</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2020/09/28/retirement-of-ensembl-pre-site/" rel="bookmark"><time class="entry-date published" datetime="2020-09-28T13:26:16+01:00" itemprop="datepublished">28th September 2020</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/bmoore/" rel="author" itemprop="url"><span itemprop="name">Ben (Outreach)</span></a></span><span class="sep">&middot;</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Retirement of Ensembl Pre! site</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>The Ensembl <a href="https://pre.ensembl.org/index.html" target="_blank" rel="noreferrer noopener">p</a><a rel="noreferrer noopener" href="https://pre.ensembl.org/index.html" target="_blank">re! site</a> will be retired on 31st January 2021.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2020/09/28/retirement-of-ensembl-pre-site/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> <article itemscope itemtype="http://schema.org/Article" id="post-12597" class="post-12597 post type-post status-publish format-standard hentry category-02-updates category-01-release tag-bioinformatics tag-ensembl tag-ensembl-genomes tag-genome tag-genomics tag-rapid tag-rapid-release tag-release"> <header class="entry-header"> <h2 class="entry-title" itemprop="name"> <a itemprop="url" href="https://www.ensembl.info/2020/06/25/ensembl-rapid-release/" title="Permalink to Ensembl Rapid Release" rel="bookmark">Ensembl Rapid Release</a> </h2> <div class="entry-meta"><span class="entry-date"><a href="https://www.ensembl.info/2020/06/25/ensembl-rapid-release/" rel="bookmark"><time class="entry-date published" datetime="2020-06-25T09:27:56+01:00" itemprop="datepublished">25th June 2020</time></a></span> by <span class="author vcard" itemscope itemprop="author" itemtype="http://schema.org/Person"><a class="url fn n" href="https://www.ensembl.info/author/bmoore/" rel="author" itemprop="url"><span itemprop="name">Ben (Outreach)</span></a></span><span class="sep">&middot;</span><span class="comments-link"><span>Comments Off<span class="screen-reader-text"> on Ensembl Rapid Release</span></span></span></div> </header> <div class="entry-content" itemprop="articleBody"> <p>We are excited to announce the launch of the <a href="http://rapid.ensembl.org/">Ensembl Rapid Release</a> website. Ensembl Rapid Release is a new, lightweight genome browser designed&nbsp;to allow quick release of the latest genome annotation for a large number of vertebrate and non-vertebrate species.</p> <a class="btn btn-default btn-sm" href="https://www.ensembl.info/2020/06/25/ensembl-rapid-release/">Continue reading <i class="fa fa-angle-double-right"></i></a> </div> </article> </div> <footer class="site-info" itemscope itemtype="http://schema.org/WPFooter"> <a href="http://wordpress.org/" title="Semantic Personal Publishing Platform">Proudly powered by WordPress</a>. 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