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ImageJX
<!DOCTYPE html> <html> <head> <title>ImageJX</title> <meta charset="utf-8" /> <meta name="viewport" content="width=device-width, initial-scale=1, maximum-scale=3" /> <meta content="ImageJ Wiki" property="og:site_name"> <meta content="ImageJX" property="og:title"> <meta content="article" property="og:type"> <meta content="The ImageJ wiki is a community-edited knowledge base on topics relating to ImageJ, a public domain program for processing and analyzing scientific images, and its ecosystem of derivatives and variants, including ImageJ2, Fiji, and others." property="og:description"> <meta content="https://imagej.github.io/software/imagejx" property="og:url"> <meta content="https://imagej.github.io/media/icons/imagej2.png" property="og:image"> <link rel="apple-touch-icon" sizes="180x180" href="/apple-touch-icon.png"> <link rel="icon" type="image/png" sizes="32x32" href="/favicon-32x32.png"> <link rel="icon" type="image/png" sizes="16x16" href="/favicon-16x16.png"> <link rel="manifest" 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href="/"><img id="site-logo" src="/media/icons/imagej2.png"></a> <div id="search-panel"> <div id="search-box"></div> </div> </section> <!-- Page-info --> <div class="page-info"> <a href="https://github.com/imagej/imagej.github.io/commits/main/_pages/software/imagejx.md">Page history</a> <a href="https://github.com/imagej/imagej.github.io/edit/main/_pages/software/imagejx.md">Edit this page</a> <a href="/editing">How do I edit this website?</a><br><a href="https://imagej.net/imagej-wiki-static/ImageJX">Original MediaWiki page</a></div> <section id="left-column" class="sidebar dock"> <!-- Menu --> <div class="menu dockable"> <div class="drag-handle"></div><h3>ImageJ Docs</h3> <ul> <li><a href="/downloads">Download</a></li> <li><details><summary>Learn</summary><ul> <li><details><summary><a href="/learn">ImageJ Basics</a></summary><ul> <li><a href="/tutorials">Tutorials</a></li> <li><a href="/learn/user-guides">User Guides</a></li> <li><a href="/learn/keyboard-shortcuts">Keyboard Shortcuts</a></li> <li><a href="/learn/tips-and-tricks">Tips and Tricks</a></li> <li><a href="/learn/troubleshooting">Troubleshooting</a></li> <li><a href="/learn/faq">Frequently Asked Questions</a></li> <li><details><summary><a href="/platforms">Supported Platforms</a></summary><ul> <li><a href="/platforms/windows">Windows</a></li> <li><a href="/platforms/macos">MacOS</a></li> <li><a href="/platforms/linux">Linux</a></li> <li><a href="/platforms/pi">Raspberry Pi</a></li> <li><a href="/platforms/android">Android</a></li> </ul></details></li> <!-- Learn/ImageJ Basics/Supported Platforms --> <li><details><summary><a href="/formats">File Formats</a></summary><ul> <li><a href="/formats/bio-formats">Bio-Formats</a></li> <li><a href="/formats/video">Video formats</a></li> <li><a href="/formats/quicktime">QuickTime</a></li> <li><a href="/formats/tiff">TIFF</a></li> <li><a href="/formats/pdf">PDF</a></li> <li><a href="/formats/dicom">DICOM</a></li> <li><a href="/formats/lsm">Zeiss LSM</a></li> <li><a href="/formats/olympus">Olympus VSI</a></li> <li><a href="/formats/lurawave">Opera Flex</a></li> <li><a href="/formats/fib-sem">FIB-SEM</a></li> </ul></details></li> <!-- Learn/ImageJ Basics/File Formats --> </ul></details></li> <!-- Learn/ImageJ --> <li><details><summary><a href="/imaging">Scientific Imaging</a></summary><ul> <li><a href="/imaging/principles">Principles of Scientific Imaging</a></li> <li><a href="/imaging/annotating-images">Annotating Images</a></li> <li><a href="/imaging/colocalization-analysis">Colocalization</a></li> <li><a href="/imaging/color-image-processing">Color Image Processing</a></li> <li><a href="/imaging/deconvolution">Deconvolution</a></li> <li><a href="/imaging/image-intensity-processing">Image Intensity Processing</a></li> <li><a href="/imaging/particle-analysis">Particle Analysis</a></li> <li><a href="/imaging/registration">Registration</a></li> <li><a href="/imaging/segmentation">Segmentation</a></li> <li><a href="/imaging/stack-slice-manipulations">Stack-slice Manipulations</a></li> <li><a href="/imaging/t-functions">T-functions</a></li> <li><a href="/imaging/tracking">Tracking</a></li> <li><a href="/imaging/visualization">Visualization</a></li> <li><a href="/imaging/z-functions">Z-functions</a></li> </ul></details></li> <!-- Learn/Scientific Imaging --> </ul></details></li> <!-- Learn --> <li><details><summary><a href="/plugins">Extend</a></summary><ul> <li><a href="/list-of-extensions">List of Extensions</a></li> <li><details><summary><a href="/update-sites">Update Sites</a></summary><ul> <li><a href="/list-of-update-sites">List of Update Sites</a></li> <li><a href="/update-sites/following">Following an Update Site</a></li> <li><a href="/update-sites/setup">Creating an Update Site</a></li> <li><a href="/update-sites/tos">Terms of Service</a></li> <li><a href="/update-sites/automatic-uploads">Automatic Upload</a></li> <li><a href="/update-sites/core-uploads">Uploading to Core Sites</a></li> <li><a href="/update-sites/faq">Update Sites FAQ</a></li> <li><a href="/update-sites/stats">Statistics</a></li> </ul></details></li> <!-- Extend/Update Sites --> <li><details><summary><a href="/scripting">Scripting</a></summary><ul> <li><a href="/scripting/basics">Scripting Basics</a></li> <li><a href="/scripting/script-editor">Script Editor</a></li> <li><a href="/scripting/parameters">Parameters</a></li> <li><a href="/scripting/user-input">User Input</a></li> <li><a href="/scripting/auto-imports">Auto Import</a></li> <li><a href="/scripting/templates">Templates</a></li> <li><a href="/scripting/batch">Batch Processing</a></li> <li><a href="/scripting/headless">Running Headlessly</a></li> <li><a href="/scripting/comparisons">Scripting Comparisons</a></li> <li><a href="/scripting/toolbox">Toolbox</a></li> <li><details><summary>Languages</summary><ul> <li><a href="/scripting/beanshell">BeanShell Scripting</a></li> <li><a href="/scripting/groovy">Groovy Scripting</a></li> <li><a href="/scripting/macro">ImageJ Macro</a></li> <li><a href="/scripting/javascript">JavaScript</a></li> <li><a href="/scripting/clojure">Lisp (Clojure)</a></li> <li><a href="/scripting/matlab">MATLAB</a></li> <li><a href="/scripting/jython">Python (Jython)</a></li> <li><a href="/scripting/python">Python (native)</a></li> <li><a href="/scripting/renjin">R (Renjin)</a></li> <li><a href="/scripting/jruby">Ruby (JRuby)</a></li> <li><a href="/scripting/scala">Scala Scripting</a></li> </ul></details></li> <!-- Extend/Scripting/Languages --> </ul></details></li> <!-- Extend/Scripting --> <li><details><summary><a href="/develop">Development</a></summary><ul> <li><a href="/develop/philosophy">Philosophy</a></li> <li><a href="/develop/architecture">Architecture</a></li> <li><a href="/develop/source">Source code</a></li> <li><a href="/develop/project-management">Project management</a></li> <li><a href="/develop/coding-style">Coding style</a></li> <li><a href="/develop/javadoc">Using Javadoc</a></li> <li><a href="/develop/debugging">Debugging</a></li> <li><a href="/develop/wish-list">Wish list</a></li> <li><details><summary>Tools</summary><ul> <li><a href="/develop/github">GitHub</a></li> <li><a href="/develop/maven">Maven</a></li> <li><a href="/develop/ci">CI/CD</a></li> <li><a href="/develop/dotfiles">Dotfiles</a></li> <li><details><summary><a href="/develop/ides">IDEs</a></summary><ul> <li><a href="/develop/eclipse">Eclipse</a></li> <li><a href="/develop/netbeans">NetBeans</a></li> <li><a href="/develop/intellij">IntelliJ IDEA</a></li> <li><a href="/develop/command-line">Command Line</a></li> </ul></details></li> </ul></details></li> <!-- Extend/Development/Tools --> <li><details><summary>Guides</summary><ul> <li><a href="/develop/plugins">Writing plugins</a></li> <li><a href="/develop/improving-the-code">Contributing to a plugin</a></li> <li><a href="/develop/releasing">Development lifecycle</a></li> <li><a href="/develop/building-a-pom">Building a POM</a></li> <li><a href="/develop/debugging-exercises">Hands-on debugging</a></li> <li><a href="/develop/writing-ops">Adding new ops</a></li> <li><a href="/develop/formats">Adding new formats</a></li> <li><a href="/develop/native-libraries">Using native libraries</a></li> <li><a href="/develop/tips">Tips for developers</a></li> <li><a href="/develop/cpp-tips">Tips for C++ developers</a></li> <li><a href="/develop/ij1-plugins">ImageJ 1.x plugins</a></li> <li><a href="/develop/versioning">Versioning</a></li> <li><a href="/develop/logging">Logging</a></li> <li><a href="/develop/uber-jars">Uber-JARs</a></li> </ul></details></li> <!-- Extend/Development/Guides --> <li><details><summary><a href="/develop/git">Git</a></summary><ul> <li><a href="/develop/git/eclipse">Git in Eclipse (EGit)</a></li> <li><a href="/develop/git/mini-howto">Git mini howto</a></li> <li><a href="/develop/git/workshop">Git workshop</a></li> <li><a href="/develop/git/conflicts">Git conflicts</a></li> <li><a href="/develop/git/topic-branches">Git topic branches</a></li> <li><a href="/develop/git/notes">Git notes</a></li> <li><a href="/develop/git/reflogs">Git reflogs</a></li> <li><a href="/develop/git/submodules">Git submodules</a></li> <li><a href="/develop/git/pinpoint-regressions">How to pinpoint regressions</a></li> <li><a href="/develop/git/publish-a-repository">How to publish a git repository</a></li> <li><a href="/develop/git/extract-a-subproject">How to extract a subproject</a></li> </ul></details></li> <!-- Extend/Development/Git --> </ul></details></li> <!-- Extend/Development --> </ul></details></li> <!-- Extend --> <li><details><summary><a href="/contribute">Contribute</a></summary><ul> <li><a href="/contribute/citing">Citing</a></li> <li><a href="/people">Contributors</a></li> <li><a href="/orgs">Organizations</a></li> <li><a href="/contribute/governance">Governance</a></li> <li><a href="/contribute/funding">Funding</a></li> <li><a href="/contribute/fiji">Contributing to Fiji</a></li> <li><details><summary><a href="/licensing">Licensing</a></summary><ul> <li><details><summary><a href="/licensing/open-source">Open Source</a></summary><ul> <li><a href="/licensing/apache">Apache</a></li> <li><a href="/licensing/bsd">BSD</a></li> <li><a href="/licensing/epl">EPL</a></li> <li><a href="/licensing/gpl">GPL</a></li> <li><a href="/licensing/lgpl">LGPL</a></li> <li><a href="/licensing/mit">MIT</a></li> <li><a href="/licensing/public-domain">Public domain</a></li> <li><a href="/licensing/big">BIG</a></li> </ul></details></li> <!-- Contribute/Licensing/Open Source --> <li><a href="/licensing/closed-source">Proprietary</a></li> </ul></details></li> <!-- Contribute/Licensing --> <li><details><summary><a href="/editing">Editing the Wiki</a></summary><ul> <li><a href="/editing/advanced">Advanced Editing</a></li> <li><a href="/editing/buttons">Buttons</a></li> <li><a href="/editing/citations">Citations</a></li> <li><a href="/editing/code">Source Code</a></li> <li><a href="/editing/debugging">Debugging</a></li> <li><a href="/editing/headers">Headers</a></li> <li><a href="/editing/icons">Icons</a></li> <li><a href="/editing/images">Images</a></li> <li><a href="/editing/keys">Keyboard Shortcuts</a></li> <li><a href="/editing/linking">Linking</a></li> <li><a href="/editing/math">Math Expressions</a></li> <li><a href="/editing/menu-paths">Menu Paths</a></li> <li><a href="/editing/navigation">Navigation</a></li> <li><a href="/editing/notices">Notices</a></li> <li><a href="/editing/people">People</a></li> <li><a href="/editing/pitfalls">Pitfalls</a></li> <li><a href="/editing/quizzes">Quizzes</a></li> <li><a href="/editing/statbox">Statbox</a></li> <li><a href="/editing/symbols">Symbols</a></li> <li><a href="/editing/tables">Tables</a></li> <li><a href="/editing/tooltips">Tooltips</a></li> <li><a href="/editing/videos">Videos</a></li> <li><a href="/editing/whitespace">Whitespace</a></li> </ul></details></li> <!-- Contribute/Editing the Wiki --> </ul></details></li> <!-- Contribute --> <li><details><summary><a href="/discuss">Discuss</a></summary><ul> <li><a href="/discuss/bugs">Reporting Issues</a></li> <li><a href="/discuss/mailing-lists">Mailing Lists</a></li> <li><a href="/discuss/chat">Chat</a></li> </ul></details></li> <!-- Discuss --> <li><details open><summary>Explore</summary><ul> <li><a href="/news">News</a></li> <li><details><summary><a href="/events">Events</a></summary><ul> <li><a href="/events/presentations">Presentations</a></li> <li><a href="/events/conferences">Conferences</a></li> <li><a href="/events/hackathons">Hackathons</a></li> <li><a href="/events">More...</a></li> </ul></details></li> <!-- Discuss/Events --> <li><details><summary><a href="/libs">Libraries</a></summary><ul> <li><a href="/libs/imagej-ops">ImageJ Ops</a></li> <li><a href="/libs/imagej-common">ImageJ Common</a></li> <li><a href="/libs/imagej-legacy">ImageJ Legacy</a></li> <li><a href="/libs/scijava">SciJava</a></li> <li><a href="/libs/scifio">SCIFIO</a></li> <li><details><summary><a href="/libs/imglib2">ImgLib2</a></summary><ul> <li><a href="/libs/imglib2/getting-started">Getting Started</a></li> <li><a href="/libs/imglib2/accessors">Accessors</a></li> <li><a href="/libs/imglib2/accessibles">Accessibles</a></li> <li><a href="/libs/imglib2/examples">Examples</a></li> <li><a href="/libs/imglib2/workshop-introductory">Introductory Workshop</a></li> <li><a href="/libs/imglib2/workshop-advanced">Advanced Workshop</a></li> <li><a href="/libs/imglib2/matlab">ImgLib2 images in MATLAB</a></li> <li><a href="/libs/imglib2/benchmarks">Benchmarks</a></li> <li><a href="/libs/imglib2/faq">FAQ</a></li> <li><a href="/libs/imglib2/developing">Developing ImgLib2</a></li> <li><a href="/libs/imglib2/discussion">ImgLib2 Discussion</a></li> </ul></details></li> <!-- Explore/Libraries/ImgLib2 --> <li><a href="/libs">More...</a></li> </ul></details></li> <!-- Explore/Libraries --> <li><details open><summary><a href="/software">Software</a></summary><ul> <li><a href="/software/nih-image">NIH Image</a></li> <li><a href="/software/imagej">ImageJ</a></li> <li><a href="/software/imagej2">ImageJ2</a></li> <li><a href="/software/fiji">Fiji</a></li> <li><a href="/software">More...</a></li> </ul></details></li> <!-- Explore/Software --> </ul></details></li> <!-- Explore --> </ul> </div> </section> <section id="right-column" class="sidebar dock"> <!-- Vital stats --> <!-- Table of contents --> <div id="toc" class="toc menu dockable"> <div class="drag-handle"></div> <h3>Page contents</h3> <ul data-toc="#content" data-toc-headings="h1,h2,h3,h4,h5,h6"></ul> </div> </section> <!-- Page title --> <div class="container"> <header class="major special"> <h1>ImageJX</h1> </header> </div> <!-- Nav bar --> <!-- Main content --> <section id="page" class="main style1"> <div class="container"> <div class="box alt"></div> <div id="content" class="page-content"> <div class="notice" style="font-size: 2; background: #ebf2f8; border-left: 10px solid #67a1fe"><div class="notice-icon"><img src="/media/icons/info.svg" width="32"></div><div class="notice-content"><p>The content of this page has not been vetted since shifting away from MediaWiki. If you鈥檇 like to help, check out the <a href="/events/wiki-grand-opening/how-to-help">how to help guide</a>!</p> </div> </div> <p>ImageJX was created by Grant Harris as a means to discuss and explore improvements to ImageJ. There was an <a href="http://groups.google.com/g/imagejx">ImageJX mailing list</a> as well as an ImageJX software prototype.</p> <p>The ImageJX software prototype was a proof of concept鈥攁n attempt to reorganize ImageJ鈥檚 internals to make it more flexible. The prototype demonstrated this flexibility by recasting the program in Swing. The ImageJX project formed the basis of an application to NIH for funding, which is what launched the <a href="/software/imagej2">ImageJ2</a> project.</p> </div> </div> </section> <!-- Footer --> <section id="footer"> <ul class="icons"> <li><a href="https://forum.image.sc/tag/imagej" class="icon alt"><img src="/media/icons/image-sc.png" width="24" style="vertical-align: middle; margin-top: -10px"><span class="label">Forum</span></a></li> <li><a href="https://twitter.com/hashtag/ImageJ" class="icon brands alt fa-twitter"><span class="label">Twitter</span></a></li> <li><a href="https://github.com/imagej" class="icon brands alt fa-github"><span class="label">GitHub</span></a></li> </ul> <ul class="copyright"> <li>Design: <a href="http://html5up.net">HTML5 UP</a></li> </ul> </section> <!-- Hamburger menu --> <nav role="navigation"> <div id="ham-toggle"> <input type="checkbox" /> <span></span> <!-- top bun --> <span></span> <!-- hamburger --> <span></span> <!-- bottom bun --> <ul id="ham-menu"> <div class="menu"><h3>ImageJ Docs</h3> <ul> <li><a href="/downloads">Download</a></li> <li><details><summary>Learn</summary><ul> <li><details><summary><a href="/learn">ImageJ Basics</a></summary><ul> <li><a href="/tutorials">Tutorials</a></li> <li><a href="/learn/user-guides">User Guides</a></li> <li><a href="/learn/keyboard-shortcuts">Keyboard Shortcuts</a></li> <li><a href="/learn/tips-and-tricks">Tips and Tricks</a></li> <li><a href="/learn/troubleshooting">Troubleshooting</a></li> <li><a href="/learn/faq">Frequently Asked Questions</a></li> <li><details><summary><a href="/platforms">Supported Platforms</a></summary><ul> <li><a href="/platforms/windows">Windows</a></li> <li><a href="/platforms/macos">MacOS</a></li> <li><a href="/platforms/linux">Linux</a></li> <li><a href="/platforms/pi">Raspberry Pi</a></li> <li><a href="/platforms/android">Android</a></li> </ul></details></li> <!-- Learn/ImageJ Basics/Supported Platforms --> <li><details><summary><a href="/formats">File Formats</a></summary><ul> <li><a href="/formats/bio-formats">Bio-Formats</a></li> <li><a href="/formats/video">Video formats</a></li> <li><a href="/formats/quicktime">QuickTime</a></li> <li><a href="/formats/tiff">TIFF</a></li> <li><a href="/formats/pdf">PDF</a></li> <li><a href="/formats/dicom">DICOM</a></li> <li><a href="/formats/lsm">Zeiss LSM</a></li> <li><a href="/formats/olympus">Olympus VSI</a></li> <li><a href="/formats/lurawave">Opera Flex</a></li> <li><a href="/formats/fib-sem">FIB-SEM</a></li> </ul></details></li> <!-- Learn/ImageJ Basics/File Formats --> </ul></details></li> <!-- Learn/ImageJ --> <li><details><summary><a href="/imaging">Scientific Imaging</a></summary><ul> <li><a href="/imaging/principles">Principles of Scientific Imaging</a></li> <li><a href="/imaging/annotating-images">Annotating Images</a></li> <li><a href="/imaging/colocalization-analysis">Colocalization</a></li> <li><a href="/imaging/color-image-processing">Color Image Processing</a></li> <li><a href="/imaging/deconvolution">Deconvolution</a></li> <li><a href="/imaging/image-intensity-processing">Image Intensity Processing</a></li> <li><a href="/imaging/particle-analysis">Particle Analysis</a></li> <li><a href="/imaging/registration">Registration</a></li> <li><a href="/imaging/segmentation">Segmentation</a></li> <li><a href="/imaging/stack-slice-manipulations">Stack-slice Manipulations</a></li> <li><a href="/imaging/t-functions">T-functions</a></li> <li><a href="/imaging/tracking">Tracking</a></li> <li><a href="/imaging/visualization">Visualization</a></li> <li><a href="/imaging/z-functions">Z-functions</a></li> </ul></details></li> <!-- Learn/Scientific Imaging --> </ul></details></li> <!-- Learn --> <li><details><summary><a href="/plugins">Extend</a></summary><ul> <li><a href="/list-of-extensions">List of Extensions</a></li> <li><details><summary><a href="/update-sites">Update Sites</a></summary><ul> <li><a href="/list-of-update-sites">List of Update Sites</a></li> <li><a href="/update-sites/following">Following an Update Site</a></li> <li><a href="/update-sites/setup">Creating an Update Site</a></li> <li><a href="/update-sites/tos">Terms of Service</a></li> <li><a href="/update-sites/automatic-uploads">Automatic Upload</a></li> <li><a href="/update-sites/core-uploads">Uploading to Core Sites</a></li> <li><a href="/update-sites/faq">Update Sites FAQ</a></li> <li><a href="/update-sites/stats">Statistics</a></li> </ul></details></li> <!-- Extend/Update Sites --> <li><details><summary><a href="/scripting">Scripting</a></summary><ul> <li><a href="/scripting/basics">Scripting Basics</a></li> <li><a href="/scripting/script-editor">Script Editor</a></li> <li><a href="/scripting/parameters">Parameters</a></li> <li><a href="/scripting/user-input">User Input</a></li> <li><a href="/scripting/auto-imports">Auto Import</a></li> <li><a href="/scripting/templates">Templates</a></li> <li><a href="/scripting/batch">Batch Processing</a></li> <li><a href="/scripting/headless">Running Headlessly</a></li> <li><a href="/scripting/comparisons">Scripting Comparisons</a></li> <li><a href="/scripting/toolbox">Toolbox</a></li> <li><details><summary>Languages</summary><ul> <li><a href="/scripting/beanshell">BeanShell Scripting</a></li> <li><a href="/scripting/groovy">Groovy Scripting</a></li> <li><a href="/scripting/macro">ImageJ Macro</a></li> <li><a href="/scripting/javascript">JavaScript</a></li> <li><a href="/scripting/clojure">Lisp (Clojure)</a></li> <li><a href="/scripting/matlab">MATLAB</a></li> <li><a href="/scripting/jython">Python (Jython)</a></li> <li><a href="/scripting/python">Python (native)</a></li> <li><a href="/scripting/renjin">R (Renjin)</a></li> <li><a href="/scripting/jruby">Ruby (JRuby)</a></li> <li><a href="/scripting/scala">Scala Scripting</a></li> </ul></details></li> <!-- Extend/Scripting/Languages --> </ul></details></li> <!-- Extend/Scripting --> <li><details><summary><a 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