CINXE.COM

<!DOCTYPE html> <html class="writer-html5" lang="en"> <head> <meta charset="utf-8" /><meta name="generator" content="Docutils 0.19: https://docutils.sourceforge.io/" /> <meta name="viewport" content="width=device-width, initial-scale=1.0" /> <title>Instructional Videos | BV-BRC</title> <link rel="stylesheet" type="text/css" href="../_static/pygments.css" /> <link rel="stylesheet" type="text/css" href="../_static/css/theme.css" /> <link rel="stylesheet" type="text/css" href="../_static/css/custom.css" /> <link rel="shortcut icon" href="../_static/favicon.ico"/>  <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script> <script src="../_static/jquery.js"></script> <script src="../_static/underscore.js"></script> <script src="../_static/_sphinx_javascript_frameworks_compat.js"></script> <script src="../_static/doctools.js"></script> <script src="../_static/sphinx_highlight.js"></script> <script src="../_static/js/theme.js"></script> <link rel="author" title="About these documents" href="../about.html" /> <link rel="index" title="Index" href="../genindex.html" /> <link rel="search" title="Search" href="../search.html" /> <link rel="next" title="Webinars" href="../webinar/index.html" /> <link rel="prev" title="RASTtk, The Incremental Commands" href="../cli_tutorial/rasttk_incremental_commands.html" /> <meta name="google-site-verification" content="TkjceNtwo7upCQl_gx8Zmhhp9tCmc08LitZGuvQ1Eb8" /> <link rel="icon" sizes="16x16 32x32" href="/_static/favicon.ico" /> <link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Lato:400,400i,700|Roboto:400,700&display=swap"> <title>Instructional Videos | BV-BRC</title> </head> <body class="wy-body-for-nav"> <div class="wy-grid-for-nav"> <nav data-toggle="wy-nav-shift" class="wy-nav-side"> <div class="wy-side-scroll"> <div class="wy-side-nav-search" style="background: #e3e3e3" > <a href="../index.html"> </a> <div role="search"> <form id="rtd-search-form" class="wy-form" action="https://www.google.com/search" method="get" target="bvbrc_docs_search"> <input type="text" name="q" placeholder="Search docs" /> <input type="hidden" name="sitesearch" value="bv-brc.org" /> </form> </div> </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu"> <p class="caption" role="heading"><span class="caption-text">Updates and Reports</span></p> <ul> <li class="toctree-l1"><a class="reference internal" href="../news/index.html">News and Announcements</a></li> <li class="toctree-l1"><a class="reference internal" href="../reports_and_analysis/index.html">Reports and Analysis</a></li> </ul> <p class="caption" role="heading"><span class="caption-text">Help Resources:</span></p> <ul class="current"> <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li> <li class="toctree-l1"><a class="reference internal" href="../quick_start/index.html">Quick Start</a></li> <li class="toctree-l1"><a class="reference internal" href="../data_protocols/index.html">Data Sources and Protocols</a></li> <li class="toctree-l1"><a class="reference internal" href="../quick_references/index.html">Quick Reference Guides</a></li> <li class="toctree-l1"><a class="reference internal" href="../tutorial/index.html">Tutorials</a></li> <li class="toctree-l1"><a class="reference internal" href="../cli_tutorial/index.html">Command Line Interface</a></li> <li class="toctree-l1 current"><a class="current reference internal" href="#">Instructional Videos</a><ul> <li class="toctree-l2"><a class="reference internal" href="#quick-start">Quick Start</a></li> <li class="toctree-l2"><a class="reference internal" href="#analysis-services">Analysis Services</a></li> <li class="toctree-l2"><a class="reference internal" href="#visualizations-and-other-tools">Visualizations and Other Tools</a></li> <li class="toctree-l2"><a class="reference internal" href="#command-line-interface">Command Line Interface</a></li> </ul> </li> <li class="toctree-l1"><a class="reference internal" href="../webinar/index.html">Webinars</a></li> <li class="toctree-l1"><a class="reference internal" href="../workshops/index.html">Workshops</a></li> </ul> <p class="caption" role="heading"><span class="caption-text">System Documentation:</span></p> <ul> <li class="toctree-l1"><a class="reference internal" href="../system_documentation/data_management_sharing.html">Data Management and Sharing</a></li> <li class="toctree-l1"><a class="reference internal" href="../system_documentation/system_architecture.html">System Architecture</a></li> <li class="toctree-l1"><a class="reference internal" href="../test_procedures/index.html">Test Procedures</a></li> <li class="toctree-l1"><a class="reference internal" href="../usage_metrics.html">Usage Metrics</a></li> </ul> </div> </div> </nav> <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" style="background: #e3e3e3" > <i data-toggle="wy-nav-top" class="fa fa-bars"></i> <a href="../index.html">BV-BRC</a> </nav> <div class="wy-nav-content"> <div class="rst-content"> <div role="navigation" aria-label="Page navigation"> <ul class="wy-breadcrumbs"> <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li> <li class="breadcrumb-item active">Instructional Videos</li> <li class="wy-breadcrumbs-aside"> <a href="../_sources/videos/index.rst.txt" rel="nofollow"> View page source</a> </li> </ul> <hr/> </div> <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article"> <div itemprop="articleBody"> <section id="instructional-videos"> <h1>Instructional Videos<a class="headerlink" href="#instructional-videos" title="Permalink to this heading">露</a></h1> <p>In addtion to Quick Reference Guides and Tutorial documentation, the <a class="reference external" href="https://www.youtube.com/channel/UCDkT2ZCWhK3GBtm5R-o1J4A">BV-BRC YouTube Channel</a> provides recorded videos demonstrating use of most of the major BV-BRC tools, services, and other features.</p> <section id="quick-start"> <h2>Quick Start<a class="headerlink" href="#quick-start" title="Permalink to this heading">露</a></h2> <p>This <a class="reference external" href="https://youtu.be/Rb3d6fJ1Yxo">playlist</a> provides brief demonstrations of key BV-BRC features.</p> <ul class="simple"> <li><p><a class="reference external" href="https://youtu.be/Rb3d6fJ1Yxo">Introduction</a></p></li> <li><p><a class="reference external" href="https://youtu.be/NB5tvu1YDkc">Searching for data</a></p></li> <li><p><a class="reference external" href="https://youtu.be/q-UBdYnizN0">Filtering search results</a></p></li> <li><p><a class="reference external" href="https://youtu.be/fxDgVQ8h_Ic">Annotating a genome</a></p></li> <li><p><a class="reference external" href="https://youtu.be/Ye3P02qZZU4">Viewing a completed annotion job</a></p></li> <li><p><a class="reference external" href="https://youtu.be/Ye3P02qZZU4">Workspace guide</a></p></li> </ul> </section> <section id="analysis-services"> <h2>Analysis Services<a class="headerlink" href="#analysis-services" title="Permalink to this heading">露</a></h2> <p>These videos provide step-by-step demonstrations of BV-BRC Analysis Services.</p> <ul class="simple"> <li><p><a class="reference external" href="https://youtu.be/U0ahNJpebhs">Comparative Systems</a></p></li> <li><p><a class="reference external" href="https://youtu.be/AI23teqjnwM">Comprehensive Genome Analysis</a></p></li> <li><p><a class="reference external" href="https://youtu.be/PJ9vdCnozMg">BLAST</a></p></li> <li><p><a class="reference external" href="https://youtu.be/hZu2qK5TcgU">Similar Genome Finder</a></p></li> <li><p><a class="reference external" href="https://youtu.be/ckNPGPwoT5U">Phylogenetic Tree</a></p></li> <li><p><a class="reference external" href="https://youtu.be/uvRzymyh_hM">Genome Alignment</a></p></li> <li><p><a class="reference external" href="https://youtu.be/4MlDw9V5H7w">Primer Design</a></p></li> <li><p><a class="reference external" href="https://youtu.be/ea6GboAZPQs">MSA and SNP Analysis</a></p></li> <li><p><a class="reference external" href="https://youtu.be/VtXWBRSdXRo">Gene Tree</a></p></li> <li><p><a class="reference external" href="https://youtu.be/UJak-ifQ9FE">Proteome Comparison</a></p></li> <li><p><a class="reference external" href="https://youtu.be/PsqHeZ8pvt4">Taxonomic Classification</a></p></li> <li><p><a class="reference external" href="https://youtu.be/Xt1ptDtG-UQ">Metagenomic Binning</a></p></li> <li><p><a class="reference external" href="https://youtu.be/6MZUq42jx78">Expression Import</a></p></li> <li><p><a class="reference external" href="https://youtu.be/kEhdQJ2o-tI">RNA-Seq Analysis</a></p></li> <li><p><a class="reference external" href="https://youtube.com/playlist?list=PLWfOyhOW_Oas1LLS2wRlWzilruoSxVeJw">Fastq Utilities (Video Playlist)</a></p></li> </ul> </section> <section id="visualizations-and-other-tools"> <h2>Visualizations and Other Tools<a class="headerlink" href="#visualizations-and-other-tools" title="Permalink to this heading">露</a></h2> <p>These videos provide demonstrations of BV-BRC interactive visualizations and other tools and features in the resource.</p> <ul class="simple"> <li><p><a class="reference external" href="https://youtu.be/KQkmeG84kQY">Compare Region Viewer</a></p></li> </ul> </section> <section id="command-line-interface"> <h2>Command Line Interface<a class="headerlink" href="#command-line-interface" title="Permalink to this heading">露</a></h2> <p>These videos provide instructions for installation and use of the BV-BRC Command Line Interface (CLI).</p> <ul class="simple"> <li><p><a class="reference external" href="https://youtu.be/7bJtZOSD7yY">CLI Installation</a></p></li> <li><p><a class="reference external" href="https://youtu.be/7vpkY6LVYds">CLI Overview</a></p></li> <li><p><a class="reference external" href="https://youtu.be/97WpQfUW1uI">CLI Job Submission</a></p></li> </ul> </section> </section> </div> </div> <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer"> <a href="../cli_tutorial/rasttk_incremental_commands.html" class="btn btn-neutral float-left" title="RASTtk, The Incremental Commands" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a> <a href="../webinar/index.html" class="btn btn-neutral float-right" title="Webinars" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a> </div> <hr/> <div role="contentinfo"> <p>© Copyright 2023 | The BV-BRC Team.</p> </div> Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>. </footer> </div> </div> </section> </div> <script> jQuery(function () { SphinxRtdTheme.Navigation.enable(true); }); </script> <script> var logo = '<img src="https://www.bv-brc.org/docs/_static/bvbrc-logo-blue.png" class="logo" alt="BV-BRC Logo">'; var home = '<div class="branding"><a href="https://bv-brc.org" title="BV-BRC Homepage">BV-BRC Home</a> &rsaquo; <a href="/docs/" title="BV-BRC Documentation">Docs</a></div>'; $(".wy-side-nav-search").prepend(home).prepend(logo); </script>  <script async src="https://www.googletagmanager.com/gtag/js?id=G-GS8F60MG56"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'G-GS8F60MG56'); </script>  <script async src="https://www.googletagmanager.com/gtag/js?id=UA-165638318-1"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'UA-165638318-1'); </script> </body> </html>