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highwire-cite-metadata">medRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2024.11.21.24317720; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2024.11.21.24317720 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-905700" class = "hw-make-citation" data-encoded-apath=";medrxiv;early;2024;11;25;2024.11.21.24317720.atom" data-seqnum="905700"><a href="/highwire-save-citation/saveapath/%3Bmedrxiv%3Bearly%3B2024%3B11%3B25%3B2024.11.21.24317720.atom/nojs/905700" id="link-save-citation-toggle-905700" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="even"><div class="highwire-article-citation highwire-citation-type-highwire-article node905413 tooltip-enable" data-node-nid="905413" id="node-905413--268967355" data-pisa="medrxiv;2024.03.29.24305092v3" data-pisa-master="medrxiv;2024.03.29.24305092" data-seqnum="905413" data-apath="/medrxiv/early/2024/11/25/2024.03.29.24305092.atom" data-hw-abstract-tooltip-instance="highwire_abstract_tooltip" title="Learning interpretable cellular embedding for inferring biological mechanisms underlying single-cell transcriptomics" data-url="/highwire/article_citation_preview/905413"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2024.03.29.24305092v3" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">Learning interpretable cellular embedding for inferring biological mechanisms underlying single-cell transcriptomics</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Kang-Lin</span> <span class="nlm-surname">Hsieh</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Kai</span> <span class="nlm-surname">Zhang</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Yan</span> <span class="nlm-surname">Chu</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Lishan</span> <span class="nlm-surname">Yu</span></span>, <span class="highwire-citation-author" data-delta="4"><span class="nlm-given-names">Xiaoyang</span> <span class="nlm-surname">Li</span></span>, <span class="highwire-citation-author" data-delta="5"><span class="nlm-given-names">Nuo</span> <span class="nlm-surname">Hu</span></span>, <span class="highwire-citation-author" data-delta="6"><span class="nlm-given-names">Isha</span> <span class="nlm-surname">Kawosa</span></span>, <span class="highwire-citation-author" data-delta="7"><span class="nlm-given-names">Patrick G</span> <span class="nlm-surname">Pilie</span></span>, <span class="highwire-citation-author" data-delta="8"><span class="nlm-given-names">Pratip</span> <span class="nlm-surname">Bhattacharya</span></span>, <span class="highwire-citation-author" data-delta="9"><span class="nlm-given-names">Degui</span> <span class="nlm-surname">Zhi</span></span>, <span class="highwire-citation-author" data-delta="10"><span class="nlm-given-names">Xiaoqian</span> <span class="nlm-surname">Jiang</span></span>, <span class="highwire-citation-author" data-delta="11"><span class="nlm-given-names">Zhongming</span> <span class="nlm-surname">Zhao</span></span>, <span class="highwire-citation-author" data-delta="12"><span class="nlm-given-names">Yulin</span> <span class="nlm-surname">Dai</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">medRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2024.03.29.24305092; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2024.03.29.24305092 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-905413" class = "hw-make-citation" data-encoded-apath=";medrxiv;early;2024;11;25;2024.03.29.24305092.atom" data-seqnum="905413"><a href="/highwire-save-citation/saveapath/%3Bmedrxiv%3Bearly%3B2024%3B11%3B25%3B2024.03.29.24305092.atom/nojs/905413" id="link-save-citation-toggle-905413" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="odd"><div class="highwire-article-citation highwire-citation-type-highwire-article node905390 tooltip-enable" data-node-nid="905390" id="node-905390--22010995789" data-pisa="medrxiv;2024.04.29.24306573v3" data-pisa-master="medrxiv;2024.04.29.24306573" data-seqnum="905390" data-apath="/medrxiv/early/2024/11/23/2024.04.29.24306573.atom" data-hw-abstract-tooltip-instance="highwire_abstract_tooltip" title="Benchmarking Large Language Models for Extraction of International Classification of Diseases Codes from Clinical Documentation" data-url="/highwire/article_citation_preview/905390"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2024.04.29.24306573v3" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">Benchmarking Large Language Models for Extraction of International Classification of Diseases Codes from Clinical Documentation</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Ashley</span> <span class="nlm-surname">Simmons</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Kullaya</span> <span class="nlm-surname">Takkavatakarn</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Megan</span> <span class="nlm-surname">McDougal</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Brian</span> <span class="nlm-surname">Dilcher</span></span>, <span class="highwire-citation-author" data-delta="4"><span class="nlm-given-names">Jami</span> <span class="nlm-surname">Pincavitch</span></span>, <span class="highwire-citation-author" data-delta="5"><span class="nlm-given-names">Lukas</span> <span class="nlm-surname">Meadows</span></span>, <span class="highwire-citation-author" data-delta="6"><span class="nlm-given-names">Justin</span> <span class="nlm-surname">Kauffman</span></span>, <span class="highwire-citation-author" data-delta="7"><span class="nlm-given-names">Eyal</span> <span class="nlm-surname">Klang</span></span>, <span class="highwire-citation-author" data-delta="8"><span class="nlm-given-names">Rebecca</span> <span class="nlm-surname">Wig</span></span>, <span class="highwire-citation-author" data-delta="9"><span class="nlm-given-names">Gordon</span> <span class="nlm-surname">Smith</span></span>, <span class="highwire-citation-author" data-delta="10"><span class="nlm-given-names">Ali</span> <span class="nlm-surname">Soroush</span></span>, <span class="highwire-citation-author" data-delta="11"><span class="nlm-given-names">Robert</span> <span class="nlm-surname">Freeman</span></span>, <span class="highwire-citation-author" data-delta="12"><span class="nlm-given-names">Donald J</span> <span class="nlm-surname">Apakama</span></span>, <span class="highwire-citation-author" data-delta="13"><span class="nlm-given-names">Alexander W</span> <span class="nlm-surname">Charney</span></span>, <span class="highwire-citation-author" data-delta="14"><span class="nlm-given-names">Roopa</span> <span class="nlm-surname">Kohli-Seth</span></span>, <span class="highwire-citation-author" data-delta="15"><span class="nlm-given-names">Girish N</span> <span class="nlm-surname">Nadkarni</span></span>, <span class="highwire-citation-author" data-delta="16"><span class="nlm-given-names">Ankit</span> <span class="nlm-surname">Sakhuja</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">medRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2024.04.29.24306573; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2024.04.29.24306573 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-905390" class = "hw-make-citation" data-encoded-apath=";medrxiv;early;2024;11;23;2024.04.29.24306573.atom" data-seqnum="905390"><a href="/highwire-save-citation/saveapath/%3Bmedrxiv%3Bearly%3B2024%3B11%3B23%3B2024.04.29.24306573.atom/nojs/905390" id="link-save-citation-toggle-905390" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="even"><div class="highwire-article-citation highwire-citation-type-highwire-article node905303 tooltip-enable" data-node-nid="905303" id="node-905303--21706941342" data-pisa="medrxiv;2024.11.20.24313385v1" data-pisa-master="medrxiv;2024.11.20.24313385" data-seqnum="905303" data-apath="/medrxiv/early/2024/11/23/2024.11.20.24313385.atom" data-hw-abstract-tooltip-instance="highwire_abstract_tooltip" title="Evaluating the Limitations of Large Language Models in Therapeutic Decision-making for patients with Aortic Stenosis" data-url="/highwire/article_citation_preview/905303"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2024.11.20.24313385v1" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">Evaluating the Limitations of Large Language Models in Therapeutic Decision-making for patients with Aortic Stenosis</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Tobias</span> <span class="nlm-surname">Roeschl</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Marie</span> <span class="nlm-surname">Hoffmann</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Djawid</span> 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class="nlm-given-names">Henryk</span> <span class="nlm-surname">Dreger</span></span>, <span class="highwire-citation-author" data-delta="10"><span class="nlm-given-names">Benjamin</span> <span class="nlm-surname">O鈥橞rien</span></span>, <span class="highwire-citation-author" data-delta="11"><span class="nlm-given-names">Gerhard</span> <span class="nlm-surname">Hindricks</span></span>, <span class="highwire-citation-author" data-delta="12"><span class="nlm-given-names">Felix</span> <span class="nlm-surname">Balzer</span></span>, <span class="highwire-citation-author" data-delta="13"><span class="nlm-given-names">Volkmar</span> <span class="nlm-surname">Falk</span></span>, <span class="highwire-citation-author" data-delta="14"><span class="nlm-given-names">Alexander</span> <span class="nlm-surname">Meyer</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">medRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2024.11.20.24313385; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2024.11.20.24313385 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-905303" class = "hw-make-citation" data-encoded-apath=";medrxiv;early;2024;11;23;2024.11.20.24313385.atom" data-seqnum="905303"><a href="/highwire-save-citation/saveapath/%3Bmedrxiv%3Bearly%3B2024%3B11%3B23%3B2024.11.20.24313385.atom/nojs/905303" id="link-save-citation-toggle-905303" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="odd"><div class="highwire-article-citation highwire-citation-type-highwire-article node905207 tooltip-enable" data-node-nid="905207" id="node-905207--22107893515" 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data-delta="0"><span class="nlm-given-names">Aditya</span> <span class="nlm-surname">Jalin</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Nawat</span> <span class="nlm-surname">Swatthong</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Michelle</span> <span class="nlm-surname">Rozwadowski</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Rajnish</span> <span class="nlm-surname">Kumar</span></span>, <span class="highwire-citation-author" data-delta="4"><span class="nlm-given-names">Deb</span> <span class="nlm-surname">Barton</span></span>, <span class="highwire-citation-author" data-delta="5"><span class="nlm-given-names">Tom</span> <span class="nlm-surname">Braun</span></span>, <span class="highwire-citation-author" data-delta="6"><span class="nlm-given-names">Noelle</span> <span class="nlm-surname">Carlozzi</span></span>, <span 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data-seqnum="905207"><a href="/highwire-save-citation/saveapath/%3Bmedrxiv%3Bearly%3B2024%3B11%3B22%3B2024.11.21.24317641.atom/nojs/905207" id="link-save-citation-toggle-905207" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="even"><div class="highwire-article-citation highwire-citation-type-highwire-article node905184 tooltip-enable" data-node-nid="905184" id="node-905184--21314311907" data-pisa="medrxiv;2024.11.21.24317696v1" data-pisa-master="medrxiv;2024.11.21.24317696" data-seqnum="905184" data-apath="/medrxiv/early/2024/11/22/2024.11.21.24317696.atom" data-hw-abstract-tooltip-instance="highwire_abstract_tooltip" title="Research on the Structural Characteristics and Evolution of China鈥檚 Medical and Health Innovation Cooperation Network Based on the Chinese Medical Science and Technology Awards" data-url="/highwire/article_citation_preview/905184"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2024.11.21.24317696v1" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">Research on the Structural Characteristics and Evolution of China鈥檚 Medical and Health Innovation Cooperation Network Based on the Chinese Medical Science and Technology Awards</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Li</span> <span class="nlm-surname">Xiaoqian</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Zhang</span> <span class="nlm-surname">Fan</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Zhang</span> <span class="nlm-surname">Junliang</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Wang</span> <span class="nlm-surname">Zhengfang</span></span>, <span class="highwire-citation-author" data-delta="4"><span class="nlm-given-names">Yu</span> <span class="nlm-surname">Yue</span></span>, <span class="highwire-citation-author" data-delta="5"><span class="nlm-given-names">Chen</span> <span class="nlm-surname">Huizheng</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">medRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2024.11.21.24317696; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2024.11.21.24317696 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-905184" class = "hw-make-citation" data-encoded-apath=";medrxiv;early;2024;11;22;2024.11.21.24317696.atom" data-seqnum="905184"><a href="/highwire-save-citation/saveapath/%3Bmedrxiv%3Bearly%3B2024%3B11%3B22%3B2024.11.21.24317696.atom/nojs/905184" id="link-save-citation-toggle-905184" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="odd"><div class="highwire-article-citation highwire-citation-type-highwire-article node903973 tooltip-enable" data-node-nid="903973" id="node-903973--2430240739" data-pisa="medrxiv;2024.11.18.24317466v1" data-pisa-master="medrxiv;2024.11.18.24317466" data-seqnum="903973" data-apath="/medrxiv/early/2024/11/20/2024.11.18.24317466.atom" data-hw-abstract-tooltip-instance="highwire_abstract_tooltip" title="Human-level information extraction from clinical reports with fine-tuned language models" data-url="/highwire/article_citation_preview/903973"><div class="highwire-cite highwire-cite-highwire-article highwire-citation-biorxiv-article-pap-list clearfix" > <span class="highwire-cite-title" > <a href="/content/10.1101/2024.11.18.24317466v1" class="highwire-cite-linked-title" data-icon-position="" data-hide-link-title="0"><span class="highwire-cite-title">Human-level information extraction from clinical reports with fine-tuned language models</span></a> </span> <div class="highwire-cite-authors" ><span class="highwire-citation-authors"><span class="highwire-citation-author first" data-delta="0"><span class="nlm-given-names">Longchao</span> <span class="nlm-surname">Liu</span></span>, <span class="highwire-citation-author" data-delta="1"><span class="nlm-given-names">Long</span> <span class="nlm-surname">Lian</span></span>, <span class="highwire-citation-author" data-delta="2"><span class="nlm-given-names">Yiyan</span> <span class="nlm-surname">Hao</span></span>, <span class="highwire-citation-author" data-delta="3"><span class="nlm-given-names">Aidan</span> <span class="nlm-surname">Pace</span></span>, <span class="highwire-citation-author" data-delta="4"><span class="nlm-given-names">Elaine</span> <span class="nlm-surname">Kim</span></span>, <span class="highwire-citation-author" data-delta="5"><span class="nlm-given-names">Nour</span> <span class="nlm-surname">Homsi</span></span>, <span class="highwire-citation-author" data-delta="6"><span class="nlm-given-names">Yash</span> <span class="nlm-surname">Pershad</span></span>, <span class="highwire-citation-author" data-delta="7"><span class="nlm-given-names">Liheng</span> <span class="nlm-surname">Lai</span></span>, <span class="highwire-citation-author" data-delta="8"><span class="nlm-given-names">Thomas</span> <span class="nlm-surname">Gracie</span></span>, <span class="highwire-citation-author" data-delta="9"><span class="nlm-given-names">Ashwin</span> <span class="nlm-surname">Kishtagari</span></span>, <span class="highwire-citation-author" data-delta="10"><span class="nlm-given-names">Peter R</span> <span class="nlm-surname">Carroll</span></span>, <span class="highwire-citation-author" data-delta="11"><span class="nlm-given-names">Alexander G</span> <span class="nlm-surname">Bick</span></span>, <span class="highwire-citation-author" data-delta="12"><span class="nlm-given-names">Anobel Y</span> <span class="nlm-surname">Odisho</span></span>, <span class="highwire-citation-author" data-delta="13"><span class="nlm-given-names">Maggie</span> <span class="nlm-surname">Chung</span></span>, <span class="highwire-citation-author" data-delta="14"><span class="nlm-given-names">Adam</span> <span class="nlm-surname">Yala</span></span></span></div> <div class="highwire-cite-metadata" ><span class="highwire-cite-metadata-journal highwire-cite-metadata">medRxiv </span><span class="highwire-cite-metadata-pages highwire-cite-metadata">2024.11.18.24317466; </span><span class="highwire-cite-metadata-doi highwire-cite-metadata"><span class="doi_label">doi:</span> https://doi.org/10.1101/2024.11.18.24317466 </span></div> <div class="highwire-cite-extras" ><div id = "hw-make-citation-903973" class = "hw-make-citation" data-encoded-apath=";medrxiv;early;2024;11;20;2024.11.18.24317466.atom" data-seqnum="903973"><a href="/highwire-save-citation/saveapath/%3Bmedrxiv%3Bearly%3B2024%3B11%3B20%3B2024.11.18.24317466.atom/nojs/903973" id="link-save-citation-toggle-903973" class="link-save-citation-save use-ajax hw-link-save-unsave-catation link-icon" title="Save"><span class="icon-plus"></span> <span class="title">Add to Selected Citations</span></a></div></div> </div> </div></li><li class="even"><div class="highwire-article-citation highwire-citation-type-highwire-article node903974 tooltip-enable" data-node-nid="903974" id="node-903974--22112030577" data-pisa="medrxiv;2024.11.19.24317595v1" 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