GSS

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e.g. RAPD, RFLP, AFLP and so on.</li> <li>cosmid/BAC/HTCYAC end sequences</li> <li>exon trap, gene trap</li> <li>transposon-tagged sequences</li> </ul> <p>You can submit GSS data to DDBJ through <a href="/ddbj/mss-e.html">Mass Submission System (MSS)</a></p> <dl> <dt>Notes on the GSS submission</dt> <dd> <ul> <li>Prior to your submission, remove regions of cloning vectors from your sequences.</li> <li>Clone Id is required for <a href="/ddbj/qualifiers-e.html#clone">clone</a> qualifer.</li> </ul> </dd> </dl> <h2 id="flat-file">Sample flat file</h2> <p>Aspects of GSS</p> <ul> <li>Though there are exceptions, no <a href="/ddbj/flat-file-e#FeaturesB">feature</a> information is provided except source.</li> <li><a href="#LocusA">LOCUS</a> line provides the division name, “GSS”.</li> <li>“GSS” is indicated in <a href="#KeywordsA">KEYWORDS</a> line.</li> </ul>  <pre><code><a id="LocusA" href="/ddbj/flat-file-e#LocusB">LOCUS</a> <a id="LocusNameA" href="/ddbj/flat-file-e#LocusNameB">GA000000</a> <a id="SequenceLengthA" href="/ddbj/flat-file-e#SequenceLengthB">423 bp</a> <a id="MoleculeTypeA" href="/ddbj/flat-file-e#MoleculeTypeB">DNA</a> <a id="ModificationDateA" href="/ddbj/flat-file-e#ModificationDateB">linear</a> <a id="DivisionA" href="/ddbj/flat-file-e#DivisionB">GSS</a> <a id="ModificationDateA" href="/ddbj/flat-file-e#ModificationDateB">15-OCT-2008</a> <a id="DefinitionA" href="/ddbj/flat-file-e#DefinitionB">DEFINITION</a> Arabidopsis thaliana DNA, BAC clone: CIC5D1, left end, chromosome 1 between mi303 and mi259. <a id="AccessionA" href="/ddbj/flat-file-e#AccessionB">ACCESSION</a> GA000000 <a id="VersionA" href="/ddbj/flat-file-e#VersionB">VERSION</a> GA000000.1 <a id="KeywordsA" href="/ddbj/flat-file-e#KeywordsB">KEYWORDS</a> GSS. <a id="SourceA" href="/ddbj/flat-file-e#SourceB">SOURCE</a> Arabidopsis thaliana (thale cress) <a id="OrganismA" href="/ddbj/flat-file-e#OrganismB">ORGANISM</a> Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. <a id="Reference1A" href="/ddbj/flat-file-e#Reference1B">REFERENCE 1</a> (bases 1 to 423) <a id="AuthorsA" href="/ddbj/flat-file-e#AuthorsB">AUTHORS</a> Mishima,H., Yamada,T. and Liu,G.Q. <a id="TitleA" href="/ddbj/flat-file-e#TitleB">TITLE</a> Direct Submission <a id="JournalA" href="/ddbj/flat-file-e#JournalB">JOURNAL</a> Submitted (30-SEP-2008) to the DDBJ/EMBL/GenBank databases. Contact:Hanako Mishima National Institute of Genetics, DNA Data Bank of Japan; Yata 1111, Mishima, Shizuoka 411-8540, Japan <a id="Reference2A" href="/ddbj/flat-file-e#Reference2B">REFERENCE 2</a> AUTHORS Mishima,H., Yamada,T., Park,C.S. and Liu,G.Q. TITLE Arabidopsis thaliana DNA JOURNAL Unpublished (2008) <a id="FeaturesA" href="/ddbj/flat-file-e#FeaturesB">FEATURES</a> Location/Qualifiers <a id="FeaturesSourceA" href="/ddbj/flat-file-e#FeaturesSourceB">source</a> <a href="/ddbj/location-e.html">1..423</a> /<a href="/ddbj/qualifiers-e.html#chromosome">chromosome</a>="1" /<a href="/ddbj/qualifiers-e.html#clone">clone</a>="CIC5D1" /<a href="/ddbj/qualifiers-e.html#collection_date">collection_date</a>="2001" /<a href="/ddbj/qualifiers-e.html#db_xref">db_xref</a>="taxon:3702" /<a href="/ddbj/qualifiers-e.html#ecotype">ecotype</a>="Columbia" /<a href="/ddbj/qualifiers-e.html#geo_loc_name">geo_loc_name</a>="USA" /<a href="/ddbj/qualifiers-e.html#map">map</a>="between mi303 and mi259" /<a href="/ddbj/qualifiers-e.html#mol_type">mol_type</a>="genomic DNA" /<a href="/ddbj/qualifiers-e.html#organism">organism</a>="Arabidopsis thaliana" <a id="BaseCountA" href="#BaseCountB">BASE COUNT</a> 105 a 98 c 112 g 108 t <a id="OriginA" href="#OriginB">ORIGIN</a> 1 attaatataa gctaaatatg tttttcaata tatattgata atagaatatc aacaatttgg : -- The rest of nucleotide sequence is omitted -- : <a id="EndA" href="/ddbj/flat-file-e#EndB">//</a></code></pre> </main> <aside class="related-pages"> <h2 class="caption">Related pages</h2> <div class="navigation"> <nav> <ul> <li> <a href="/ddbj/genome-e.html">Data Submission from Genome Project</a> </li> <li> <a href="/ddbj/environmental-e.html">Submission of environmental sequences</a> </li> <li> <a href="/ddbj/transcriptome-e.html">Data Submission from Transcriptome Project</a> </li> <li> <a href="/ddbj/tpa-e.html">Third Party Data (TPA)</a> </li> </ul> </nav> </div> </aside> </section> </div> </section> </div> <footer></footer> <div id="back-top"></div> </body> </html>

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