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Episode 7: Informatics Consortia - The Biomedical Informatics Roundtable Podcast

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Our journal club segment features a paper from Nature Machine Intelligence on machine learning analysis of COVID-19 data. We present the sci-kit learning resource in our software segment and present a nice source of open data for COVID-19. 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class="podcast-template-default single single-podcast postid-87 single-format-standard secondline-fancy-player elementor-default elementor-kit-73 elementor-page elementor-page-87"> <div id="main-container-secondline" class=" secondline-themes-header-normal-width secondline-themes-logo-position-left secondline-themes-search-icon-off secondline-themes-one-page-nav-off " > <div id="secondline-themes-header-position"> <div id="secondline-fixed-nav"> <header id="masthead-slt" class="secondline-themes-site-header secondline-themes-nav-right"> <div id="secondline-themes-sidebar-fixed-nav"> <div id="logo-nav-slt"> <div class="width-container-slt secondline-themes-logo-container"> <h1 id="logo-slt" class="logo-inside-nav-slt noselect"> <a href="https://bmipodcast.org/" title="The Biomedical Informatics Roundtable Podcast" rel="home"> <img src="https://bmipodcast.org/wp-content/uploads/2019/10/logo.jpg" alt="The Biomedical Informatics Roundtable Podcast" class="secondline-themes-default-logo "> </a> </h1> </div><!-- close .width-container-slt --> <div class="width-container-slt optional-centered-area-on-mobile"> <div class="mobile-menu-icon-slt noselect"><i class="fa fa-bars"></i></div> <div id="secondline-themes-header-search-icon" class="noselect"> <i class="fa fa-search"></i> <div id="panel-search-secondline"> <form method="get" class="search-form" action="https://bmipodcast.org/"> <label> <span class="screen-reader-text">Search for:</span> <input type="search" class="search-field" placeholder="Search..." value="" name="s"> </label> <input type="submit" class="search-submit" value="Submit"> <div class="clearfix-slt"></div> </form><div class="clearfix-slt"></div> </div> </div> <div id="secondline-inline-icons"> <div class="secondline-themes-social-icons"> <div class="clearfix-slt"></div> </div><!-- close .secondline-themes-social-icons --></div> <div id="secondline-nav-container"> <nav id="site-navigation" class="main-navigation"> <div class="clearfix-slt"></div> </nav> <div class="clearfix-slt"></div> </div><!-- close #secondline-nav-container --> <div class="clearfix-slt"></div> </div><!-- close .width-container-slt --> </div><!-- close #logo-nav-slt --> <div id="main-nav-mobile"> <div class="secondline-themes-social-icons"> <div class="clearfix-slt"></div> </div><!-- close .secondline-themes-social-icons --> <div class="sidebar secondline-themes-mobile-sidebar"></div> <div class="clearfix-slt"></div> </div><!-- close #mobile-menu-container --> </div><!-- close #secondline-themes-sidebar-fixed-nav --> </header> </div><!-- close #secondline-fixed-nav --> </div><!-- close #secondline-themes-header-position --> <div id="page-title-slt-post-page"> <div id="blog-post-title-meta-container" > <div class="width-container-slt"> <h1 class="blog-page-title">Episode 7: Informatics Consortia</h1> <div class="single-secondline-post-meta"> <span class="blog-meta-date-display">May 26, 2020</span> <span class="blog-meta-author-display"><a href="https://bmipodcast.org/author/moorejh28/">moorejh28</a></span> <span class="single-blog-meta-category-list"> The Biomedical Informatics Roundtable Podcast </span> <span class="blog-meta-comments"><span>Comments Off<span class="screen-reader-text"> on Episode 7: Informatics Consortia</span></span></span> </div> <div id="single-post-player"> <div id="player-float-secondline"> <div class="single-player-container-secondline"> <div class="podcast-episode episode-87"> <h3 class="episode-title">Episode 7: Informatics Consortia</h3> <div id="podcast_player_87" class="podcast_player"></div> </div> </div> </div> </div> <div class="clearfix-slt"></div> </div><!-- close .width-container-slt --> </div><!-- close #blog-post-title-meta-container --> </div><!-- #page-title-slt --> <div id="content-slt" class="site-content-blog-post"> <div class="width-container-slt "> <div id="main-container-slt"> <div id="post-87" class="post-87 podcast type-podcast status-publish format-standard hentry series-the-biomedical-informatics-roundtable-podcast"> <div class="secondline-single-container"> <div class="secondline-blog-single-content"> <div class="secondline-themes-blog-single-excerpt"> <div data-elementor-type="wp-post" data-elementor-id="87" class="elementor elementor-87" data-elementor-post-type="podcast"> <section class="elementor-section elementor-top-section elementor-element elementor-element-d50e806 elementor-section-boxed elementor-section-height-default elementor-section-height-default" data-id="d50e806" data-element_type="section"> <div class="elementor-container elementor-column-gap-default"> <div class="elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-8c7b3c0" data-id="8c7b3c0" data-element_type="column"> <div class="elementor-widget-wrap elementor-element-populated"> <div class="elementor-element elementor-element-a26a31f elementor-widget elementor-widget-audio" data-id="a26a31f" data-element_type="widget" data-widget_type="audio.default"> <div class="elementor-widget-container"> <div class="elementor-soundcloud-wrapper"> <iframe width="1200" height="200" scrolling="no" frameborder="no" src="https://w.soundcloud.com/player/?visual=false&#038;url=https%3A%2F%2Fapi.soundcloud.com%2Ftracks%2F829187782&#038;show_artwork=true&#038;maxheight=1000&#038;maxwidth=1200&#038;auto_play=false&#038;buying=true&#038;liking=true&#038;download=true&#038;sharing=true&#038;show_comments=true&#038;show_playcount=true&#038;show_user=true&#038;color"></iframe> </div> </div> </div> </div> </div> </div> </section> <section class="elementor-section elementor-top-section elementor-element elementor-element-e09f259 elementor-section-boxed elementor-section-height-default elementor-section-height-default" data-id="e09f259" data-element_type="section"> <div class="elementor-container elementor-column-gap-default"> <div class="elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-9fc145b" data-id="9fc145b" data-element_type="column"> <div class="elementor-widget-wrap elementor-element-populated"> <div class="elementor-element elementor-element-ee15532 elementor-widget elementor-widget-text-editor" data-id="ee15532" data-element_type="widget" data-widget_type="text-editor.default"> <div class="elementor-widget-container"> <p>In this eighth episode, we discuss the pros and cons of participating in research consortia. Our journal club segment features a paper from Nature Machine Intelligence on machine learning analysis of COVID-19 data. We present the sci-kit learning resource in our software segment and present a nice source of open data for COVID-19. We also cover a number of news items. Finally, we discuss 10 tips for giving a great scientific presentation in our training segment.</p><p>Piece on rigorous science for the study of COVID-19 in <a href="https://www.irishtimes.com/news/science/rigorous-science-rather-than-speed-matters-most-in-race-for-a-covid-19-cure-1.4245562">The Irish Times</a>.</p><p><a href="https://biodatamining.biomedcentral.com/articles/10.1186/s13040-020-00213-y">Editorial in BioData Mining</a> on how informaticians can get involved with COVID-19 research.</p><p><a href="https://www.forbes.com/sites/rachelsandler/2020/05/12/twitter-to-allow-employees-to-work-from-home-after-coronavirus">Forbes piece</a> on Twitter making work from home permanent.</p><p><a href="https://www.npr.org/sections/coronavirus-live-updates/2020/05/08/852693377/google-says-most-employees-will-likely-work-remotely-through-end-of-year">NPR piece</a> on Google&#8217;s work from home plans.</p><p>The <a href="https://ehrn.org/">Epic Health Research Network</a> (EHRN)</p><p>The U.S. Public Health Emergency Privacy Act reported by <a href="https://www.healthcareitnews.com/news/congressional-democrats-introduce-bill-safeguard-health-data">Healthcare IT News</a></p><p><a href="https://www.blockeley.com/">UC Berkeley graduation in Minecraft</a></p><p>60th anniversary of the <a href="https://www.theregister.co.uk/2020/05/15/algol_60_at_60">ALGOL-60</a> programming language</p><p><a href="https://www.quantamagazine.org/graduate-student-solves-decades-old-conway-knot-problem-20200519">Graduate student</a> solves 50-year math problem</p><p><a href="https://healthtechmagazine.net/article/2020/05/what-chief-nursing-informatics-officer-perfcon">Health Tech Magazine</a> piece on Chief Nursing Informatics Officers</p><p><a href="https://jamanetwork.com/journals/jama/fullarticle/2766368">Paper in JAMA</a> by Sittig and Singh on health IT and COVID-19</p><p>Journal club paper in <a href="https://www.nature.com/articles/s42256-020-0180-7">Nature Machine Intelligence</a></p><p>The open-source <a href="https://scikit-learn.org/">scikit-learn</a> machine learning library</p><p><a href="https://www.semanticscholar.org/cord19">CORD-19</a> &#8211; The COVID-19 Open Research Dataset</p><p><a href="https://www.nature.com/articles/d41586-018-07780-5">Paper in Nature</a> on 10 tips for a great scientific talk</p> </div> </div> </div> </div> </div> </section> </div> </div> <div class="clearfix-slt"></div> <ul class="blog-single-social-sharing noselect"> <li class="social-sharing-title">Share:</li> <li><a href="http://www.facebook.com/sharer.php?u=https://bmipodcast.org/podcast/episode-7-informatics-consortia/&t=Episode+7%3A+Informatics+Consortia" title="Share on Facebook" class="facebook-share" target="_blank"><i class="fab fa-facebook-f"></i></a></li> <li><a href="https://twitter.com/share?text=Episode+7%3A+Informatics+Consortia&url=https://bmipodcast.org/podcast/episode-7-informatics-consortia/" title="Twitter" class="twitter-share" 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class="clearfix-slt"></div> <div class="clearfix-slt"></div> </div><!-- close .secondline-blog-content --> <div class="clearfix-slt"></div> </div><!-- close .secondline-single-container --> </div><!-- #post-## --> </div><!-- close #main-container-slt --> <div class="clearfix-slt"></div> </div><!-- close .width-container-slt --> </div><!-- #content-slt --> <footer id="site-footer" class="secondline-themes-footer-normal-width footer-copyright-align-left"> <div id="widget-area-secondline"> <div class="width-container-slt footer-1-slt"> <div class="clearfix-slt"></div> <div id="recent-podcast-episodes-2" class="widget widget_recent_entries widget_recent_episodes"> <h4 class="widget-title">Episodes</h4> <ul> <li> <a href="https://bmipodcast.org/podcast/episode-18-ai-hype/">Episode 18: AI Hype</a> <span class="post-date">February 19, 2023</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-17-dealing-with-failure/">Episode 17: Dealing With Failure</a> <span class="post-date">March 5, 2022</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-16-changing-institutions/">Episode 16: Changing Institutions</a> <span class="post-date">September 9, 2021</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-15-writing-motivation/">Episode 15: Writing Motivation</a> <span class="post-date">June 28, 2021</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-14-cultivating-an-informatics-career/">Episode 14: Cultivating an Informatics Career</a> <span class="post-date">May 23, 2021</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-13-federated-machine-learning/">Episode 13: Federated Machine Learning</a> <span class="post-date">March 7, 2021</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-12-inf/">Episode 12: Informatics History</a> <span class="post-date">January 24, 2021</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-11-leadership-roles/">Episode 11: Leadership Roles</a> <span class="post-date">December 12, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-10-federated-data/">Episode 10: Federated Data</a> <span class="post-date">November 4, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-9-leadership-coaching/">Episode 9: Leadership Coaching</a> <span class="post-date">August 1, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-8-covid-19-data-science/">Episode 8: COVID-19 Data Science</a> <span class="post-date">June 29, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-7-informatics-consortia/">Episode 7: Informatics Consortia</a> <span class="post-date">May 26, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-6-the-metaverse/">Episode 6: The Metaverse</a> <span class="post-date">May 10, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/evolutionary-computation/">Episode 5: Evolutionary Computation</a> <span class="post-date">March 29, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-4-leadership-skills/">Episode 4: Leadership Skills</a> <span class="post-date">February 22, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/informatics-journals/">Episode 3: Informatics Journals</a> <span class="post-date">January 29, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-2-data-science/">Episode 2: Data Science</a> <span class="post-date">December 18, 2019</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-1-machine-learning-interpretation/">Episode 1: Machine Learning Interpretation</a> <span class="post-date">November 8, 2019</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-0-deep-phenotyping/">Episode 0: Deep Phenotyping</a> <span class="post-date">October 12, 2019</span> </li> </ul> </div><div id="text-2" class="widget widget_text"><h4 class="widget-title">Hosts</h4> <div class="textwidget"><p>The Biomedical Informatics Roundtable Podcast is hosted by Jason H. Moore, Ph.D. and Marylyn D. Ritchie, Ph.D.</p> <p>Dr. Moore is Chair of the Department of Computational Biomedicine at <a href="https://www.cedars-sinai.org/">Cedars-Sinai Medical Center</a> in Los Angeles, CA.</p> <p>Dr. Ritchie is Professor of <a href="https://www.med.upenn.edu/genetics/">Genetics</a>, Associate Director of the Institute for Biomedical Informatics, and Associate Director of the <a href="https://www.med.upenn.edu/pcpm/">Penn Center for Precision Medicine</a> at聽 Penn Medicine of the University of Pennsylvania.</p> </div> </div> <div class="clearfix-slt"></div> </div><!-- close .width-container-slt --> </div><!-- close #widget-area-slt --> <div id="secondline-themes-copyright"> <div class="width-container-slt"> </div> <!-- close .width-container-slt --> <div class="width-container-slt"> <ul class="secondline-themes-social-icons secondline-themes-footer-icon-text-hide secondline-themes-footer-icon-align-right"> <li><a href="https://www.facebook.com/Biomedical-Informatics-Roundtable-Podcast-101122651309537" target="_blank" class="secondline-themes-facebook" title="Facebook"><i class="fab fa-facebook-f"></i><span>Facebook</span></a></li> <li><a href="https://twitter.com/bmirpodcast" target="_blank" class="secondline-themes-twitter" title="Twitter"><i class="fab fa-twitter"></i><span>Twitter</span></a></li> <li><a href="#!" target="_blank" class="secondline-themes-soundcloud" title="Soundcloud"><i class="fab fa-soundcloud"></i><span>Soundcloud</span></a></li> <li><a href="mailto:feedback@bmipodcast.org" class="secondline-themes-mail" title="Email"><i class="fa fa-envelope"></i><span>Email</span></a></li> </ul><!-- close .secondline-themes-social-icons --> <div id="copyright-text"> Copyright 2020 by Jason H. 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