Circular Genome Viewer

<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> <html LANG="en"><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"> <script src="https://code.jquery.com/jquery-3.5.1.min.js"></script> <script src="https://code.jquery.com/jquery-migrate-3.3.2.min.js"></script> <script> var $j = jQuery.noConflict(); </script>   <link rel="stylesheet" href="https://unpkg.com/purecss@2.0.6/build/base-min.css"> <link rel="stylesheet" href="https://unpkg.com/purecss@2.0.6/build/grids-min.css"> <link rel="stylesheet" href="https://unpkg.com/purecss@2.0.6/build/grids-responsive-min.css"> <link rel="stylesheet" type="text/css" href="https://cdnjs.cloudflare.com/ajax/libs/jstree/3.3.11/themes/default/style.min.css"> <link rel="stylesheet" type="text/css" href="/jstree-themes/proton/style.css"> <link rel="stylesheet" href="/css/BioCyc_Extra.css?v=28.5" type="text/css"> <link rel="stylesheet" type="text/css" href="/combined/combined.css?v=28.5"> <link rel="stylesheet" type="text/css" href="//cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css">  <script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/yui/3.17.2/yui/yui-min.js"></script>  <script type="text/javascript" src="/combined/combined-early.js?v=28.5"></script>   <script async src="https://www.googletagmanager.com/gtag/js?id=G-NVK8K9ZK0V"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'G-NVK8K9ZK0V'); </script>  <script>(function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start': new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0], j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src= 'https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f); })(window,document,'script','dataLayer','GTM-W5T5DF7');</script>     <link rel="stylesheet" type="text/css" href="/yui/build/fonts/fonts-min.css" />  <script type="text/javascript" src="/webgraphics.js?v=28.5"></script> <script TYPE="text/javascript" > var onMenuBarReady = new YAHOO.util.CustomEvent("onMenuBarReady"); /* This event fires when we change the current organism using the organism * selector, so that subscribers can update the page accordingly. */ var organismChangedEvent = new YAHOO.util.CustomEvent("organismChanged"); /* If you update the version number here, make sure you also update it in pathwayTools.js (and the minified file)!!! 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role="navigation" aria-label="Operations"> <div class='navBoxExpansion'> <a href="#" onclick='toggleNavBox()' aria-controls="navBoxBody" aria-expanded=true role="button"> <span id="navBoxHide"> <img src='/navbox-hide.png' alt='' width='9' height='9'> hide </span> <span id="navBoxShow"> <img src='/navbox-show.png' alt='' width='9' height='9'> show operations </span> </a> </div> <div id='navBoxBody'> <br> <div id='navBoxTitle'> <div class="navBoxItem"><i><a href="organism-summary" class="dynDBName" ></a></i></div> <div class="navBoxLabel" id='objtypeNavBox'></div> <div class='navBoxItem' id='objnameNavBox'></div> </div> <span class='section1'>OPERATIONS</span> <div id="navBoxOps"> </div> </div> </div>  <div class="pageContentDynamic" role='main' id="mainContent"> <div STYLE="padding: 0 30px 30px 30px"><div id='cgControls'><div id='cgControlsHead'>Circular Genome Viewer Controls <i id='toggleCtrls' class='fa fa-lg fa-minus-square-o'></i></div><div id='cgControlsBody'><div id='listTracksPanel' class='cgControlPanel'><div class='cgCtrlHead'>Current Tracks</div><div class='cgCtrlBody'><table><tbody id='tracklist'></tbody></table><div id='globalControls'><button onclick='deleteAllTracks()'>Clear All</button> <button class='hasTooltip' title='Generate a URL that can be bookmarked or shared that shows the circular genome viewer in its current state.' onClick='generateLinkPopup()'>Generate Link</button> <button onclick='window.open("/PToolsWebsiteHowto.shtml#cgv", target="_blank")' title='Show documentation in a new tab'>Help</button></div> <div id='noTracksMsg'>No tracks currently visible. Use the Add Track controls to add a track.<div style='margin-top:8px'><button onclick='window.open("/PToolsWebsiteHowto.shtml#cgv", target="_blank")' title='Show documentation in a new tab'>Help</button></div></div></div></div><div id='addTrackPanel' class='cgControlPanel'><div class='cgCtrlHead'>Add Track</div><div class='cgCtrlBody'> <form id='addCgTrack'> <input type='hidden' id='cgOrgid' name='orgid' value='META'> <table> <tr><th>Organism:</th><td><span class='icon' style='float:right' onclick='cgUpdateOrg()' title='Change organism'><i class='fa fa-lg fa-pencil-square-o'></i></span><span id='orgName' class='hasTooltip' title='Use the edit icon at right to add a track from a different organism'></span></td></tr> <tr><th>Replicon:</th><td><span id='repliconElt'></span></td></tr> <tr><th>Display:</th><td><select id='trackType' name='type'><option value=''>Select</option></select></td></tr> <tr id='gffFileRow' style='display:none'><th></th><td class='hasTooltip' title='Upload a file of genomic features in GFF (2 or 3) format. Files must be tab-delimited, with 9 fields per line. Large files may take a long time to process. Please do not upload files with more than 10,000 features.'><input type='file' name='gffFile' id='gffFile'></td></tr> <tr id='filterRow' style='display:none'><th>Filter:</th><td><select name='filterType' id='filterType'><option value=''>No Filter</option></select></td></tr> <tr id='filterArgRow' style='display:none'><th></th><td><div id='filterArgDiv'></div></td></tr> <tr id='strandRow' style='display:none'><th>Strand:</th><td><select name='strand'><option value='both'>Both</option><option value='plus'>+ (forward)</option><option value='minus'>- (reverse)</option></select></td></tr> <tr id='scoreRow' style='display:none'><th>Scores:</th><td><select name='scoreDisplay'><option value=''>Ignore</option><option value='HT'>Map to bar height</option><option value='COLOR'>Map to color</option><option value='COLOR+HT'>Map to bar height and color</option></select></td></tr> <tr><th>Color:</th><td><input type='color' name='color' value='#222222'></td></tr> <tr><th>Label:</th><td><input type='text' name='label'></td></tr> <tr id='addTrackTicksideRow' style='display:none'><th>Orientation:</th><td><select name='tickside' id='addTrackTickSide'><option value='OUTSIDE'>Ticks Outside, Text Inside</option><option value='INSIDE'>Ticks Inside, Text Outside</option></select></td></tr><tr id='addTrackHlRow' style='display:none'><th>Add Highlight:</th><td><select name='hlType' class='hlType'><option value=''>No Highlight</option></select><input type='color' name='hlcolor' id='addTrackHlcolor' value='#FF0000'></td></tr><tr id='addTrackHlArgRow' class='hlParam' style='display:none'><th></th><td><div id='addTrackHlArgDiv'></div></td></tr> <tr id='addTrackHlLabelRow' class='hlParam' style='display:none'><th></th><td>Highlight Label: <input type='text' name='hlLabel' id='addTrackHlLabel'></td></tr> <tr class='hlParam hlAllRow'><th></th><td><input type='checkbox' name='hlAll' value='T'>Apply highlight to all applicable tracks?<div class='hlAllByOrthologDiv'>When applying highlight to tracks from other organisms:<br><input type='radio' name='hlAllOrth' value=false>Apply specified highlight criteria in other organism<br><input type='radio' name='hlAllOrth' value=true>Highlight orthologs of genes that meet the criteria in this organism</div></td></tr> </table><br><input type=submit value='Add Track'></form></div></div><div id='editTrackPanel' class='cgControlPanel' style='display:none'><div class='cgCtrlHead'>Edit Track</div><div class='cgCtrlBody'> <form id='editCgTrack'> <input type='hidden' id='trackId' name='id'><table> <tr><th>Label:</th><td><input type='text' id='trackLabel' name='label'></td></tr> <tr><th>Color:</th><td><input type='color' name='fgcolor' id='fgcolor'> <b style='vertical-align:top'>Background:</b> <input type='color' name='bgcolor' id='bgcolor'></td></tr> <tr><th class='hasTooltip' title='This setting changes the width of this track, relative to all other tracks.'>Width:</th><td><input type='number' id='trackWidth' name='width' min='3' max='100'> <b class='hasTooltip' title='This setting changes the overall radius of all tracks. This will change the width of all tracks at once, relative to the overall diagram.'>Radius (all tracks):</b><input type='number' id='radius' name='radius' min='50'></td></tr> <tr id='editScoreRow' style='display:none'><th>Scores:</th><td><select id='editScoreDisplay' name='scoreDisplay'><option value=''>Ignore</option><option value='HT'>Map to bar height</option><option value='COLOR'>Map to color</option><option value='COLOR+HT'>Map to bar height and color</option></select></td></tr> <tr id='scoreCutoffRow'><th class='hasTooltip' title='Enter a positive number to set the maximum score cutoff for the color or height scale. Any scores greater than this cutoff will be displayed at the maximum height and/or color. If you do not supply a value here, the maximum score in the dataset will be used.'>Score Max Cutoff:</th><td><input type='number' id='scoreCutoff' name='scoreCutoff'></td></tr> <tr id='ticksideRow'><th>Orientation:</th><td><select name='tickside' id='tickSide'><option value='OUTSIDE'>Ticks Outside, Text Inside</option><option value='INSIDE'>Ticks Inside, Text Outside</option></select></td></tr><tr id='addHlRow'><th>Add Highlight:</th><td><select name='hlType' class='hlType'><option value=''>No Highlight</option></select><input type='color' name='hlcolor' id='hlcolor' value='#FF0000'></td></tr><tr id='hlArgRow' class='hlParam'><th></th><td><div id='hlArgDiv'></div></td></tr> <tr id='hlLabelRow' class='hlParam'><th></th><td>Highlight Label: <input type='text' name='hlLabel' id='hlLabel'></td></tr> <tr class='hlParam hlAllRow'><th></th><td><input type='checkbox' name='hlAll' value='T'>Apply highlight to all applicable tracks?<div class='hlAllByOrthologDiv'>When applying highlight to tracks from other organisms:<br><input type='radio' name='hlAllOrth' value=false>Apply specified highlight criteria in other organism<br><input type='radio' name='hlAllOrth' value=true>Highlight orthologs of genes that meet the criteria in this organism</div></td></tr> <tr id='removeHlRow'><th>Remove Highlight(s)</th><td>Check all highlights to be removed:<div id='removeHlDiv'></div></td></tr> </table> <br><input type=submit value='Apply Changes'> <input type='button' value='Done Editing' onclick='endEdit()'></form></div></div></div></div><div id='cgDiagram'></div></div><hr><a href='#' onclick="window.open('/feedback.html?' + encodeURIComponent(location), 'bugreport', 'toolbar=no,dependent=yes,height=640,width=620,menubar=no,location=no,scrollbars=yes')" style="padding-left: 15px">Report Errors or Provide Feedback</a> <br><font size=-1 style="padding-left: 15px">Page generated by <a href="http://pathwaytools.org/" target=_top>Pathway Tools version 28.5</a> (software by SRI 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href="https://biocyc.printify.me/products" target="_blank">Purchase BioCyc Mugs</a> </p> </div> </div> </div> </div> <sri-footer></sri-footer>  <div id='orgSelectorDialogCC'></div>  <div id="multiorgSelectorDialog" style="display:none" class='resizableDialog' role='dialog' aria-modal='true' aria-labeled-by='multiorgSelectorDialogTitle'> <div class="hd"><b id='multiorgSelectorDialogTitle'>Specify List of Organism Databases</b></div> <div class="bd" id="multiorgSelectorBody"> <form id="multiorgSelectorForm" action='/'> <div id='legend' style="max-width:900px"></div> <div id='multiorg3columns'> <div> <h3>Select One or More Databases: <span id="multiorgMaxLabel"></span></h3> <div id="multiorgSelectorTabs" class="orgSelectorTabs" style='min-width:504px'> <ul> <li class="selected"><a href="#multiorgNameTab">By Name</a></li> <li><a href="#multiorgTaxTab">By Taxonomy</a></li> <li><a href="#multiorgMetadataTab">By Organism Properties</a></li> <li><a href="#multiorgSavedTab">My Lists</a></li> </ul> <div id="multiorgNameTab" class='multiorgselectorTab'> <div class='orgselectorByNameContents'> <div id="multiorgRightcontent" class='nameACColumn'> <label id="multiorgFilterOptions" style="display:block;text-align:right;font-size:smaller"> Organism Filter: <select id="multiorgFilter" onChange='updateMultiOrgFilter()'> </select> </label> <div id="multiorgselectorAutoComplete"> <input id="multiorgInput" type="text" aria-label="Start typing a genus, species and/or strain name" placeholder="Start typing a genus, species and/or strain name" spellcheck=false aria-autocomplete="list" > <div id="multiorgContainer" style="font-style:italic"></div> </div> <div id="multiorgnum"></div> </div> <div class="alphabetFilter"> <div class="screen-reader-only"> <h3>Filter organisms by first letter</h3> </div> <a href="javascript:alphabetClick('a')">A</a><br> <a href="javascript:alphabetClick('b')">B</a><br> <a href="javascript:alphabetClick('c')">C</a><br> <a href="javascript:alphabetClick('d')">D</a><br> <a href="javascript:alphabetClick('e')">E</a><br> <a href="javascript:alphabetClick('f')">F</a><br> <a href="javascript:alphabetClick('g')">G</a><br> <a href="javascript:alphabetClick('h')">H</a><br> <a href="javascript:alphabetClick('i')">I</a><br> <a href="javascript:alphabetClick('j')">J</a><br> <a href="javascript:alphabetClick('k')">K</a><br> <a href="javascript:alphabetClick('l')">L</a><br> <a href="javascript:alphabetClick('m')">M</a><br> <a href="javascript:alphabetClick('n')">N</a><br> <a href="javascript:alphabetClick('o')">O</a><br> <a href="javascript:alphabetClick('p')">P</a><br> <a href="javascript:alphabetClick('q')">Q</a><br> <a href="javascript:alphabetClick('r')">R</a><br> <a href="javascript:alphabetClick('s')">S</a><br> <a href="javascript:alphabetClick('t')">T</a><br> <a href="javascript:alphabetClick('u')">U</a><br> <a href="javascript:alphabetClick('v')">V</a><br> <a href="javascript:alphabetClick('w')">W</a><br> <a href="javascript:alphabetClick('x')">X</a><br> <a href="javascript:alphabetClick('y')">Y</a><br> <a href="javascript:alphabetClick('z')">Z</a><br> </div> </div> </div> <div id="multiorgTaxTab" class='multiorgselectorTab'> <label id="multiorgTaxAutoComplete"> <span style="padding-right:5px">Search for taxon in taxonomy tree: </span> <input id="multiorgTaxName" type="text" style="width:360px" /> <div id="multiorgTaxContainer"></div> </label> <div id="multiorgTaxTreeContainer" style="min-width:489px;overflow-y:auto;margin-top:12px"> <div id="multiorgSelectorTaxTree" class="ygtv-checkbox"></div> </div> </div> <div id="multiorgMetadataTab" style="min-width:489px;overflow-y:auto" class='multiorgselectorTab' > Find organism databases according to: <ul style="line-height:118%;margin-top:4px"> <li>Organism characteristics, e.g. pathogenicity = human <li>Collection metadata, e.g. human microbiome body site = blood <li>Database properties, e.g. # (number) of Genes < 500 </ul> <div id="mclause0" class="flexRowWrap"> <select id="mmdSlot0" onChange='updateMetadataSlot(0, "m")' aria-label='Property for constraint 1'> <option value=false selected>Select Property</option> </select> <select id="mmdConstraint0" onChange='updateMetadataSlot(0, "m")' aria-label='Operator for constraint 1'> <option value="c" selected>is</option> <option value="nc">is not</option> <option value="a">has any value</option> <option value="n">has no value</option> </select> <div id="mkeywordInput0" style="display:none" class="flexRow"> <select id="mmdKeywordOp0" onchange="updateForOp(0, 'mmdKeywordOp0', 'mmdSubstringAC0', 'm')" aria-label='Operator for constraint 1'> <option value="enum" selected>Exact Match</option> <option value="substr">Substring Match</option> </select> <div class = "mdSubstringInput" id="mmdSubstringAC0"> <input id="mmdKeyword0" type="text" aria-label='Value for constraint 1'> <div id="mmdKWContainer0"></div> </div> </div> <div id="mnumericInput0" style="display:none" class="flexRow"> <select id="mmdNumOp0" onchange="updateForOp(0, 'mmdNumOp0', 'mmdNum0', 'm')" aria-label='Numeric operator for constraint 1'> <option value="e" selected>= (approx.)</option> <option value="lt"><</option> <option value="lte">≤</option> <option value="gt">></option> <option value="gte">≥</option> <option value="enum">Select Values</option> </select> <input id="mmdNum0" type="text" aria-label='Value for constraint 1'> </div> <div id="mmdEnumContainer0" style="display:none"> <select id="mmdEnum0" multiple aria-label='Value for constraint 1'> </select> </div> </div> <div id="mclause1" style="display:none"> <select id="mconnector1" aria-label='Connector for constraint 2'> <option value='AND' selected>AND</option> <option value='OR'>OR</option> </select> <input id="mmdDelete1" type="button" value ="Remove Constraint" onclick='mdRemoveClause(1, "m")' aria-label='Remove Constraint 2'> <br> <div class="flexRowWrap"> <select id="mmdSlot1" onChange='updateMetadataSlot(1, "m")' aria-label='Property for constraint 2'> <option value=false selected>Select Property</option> </select> <select id="mmdConstraint1" onChange='updateMetadataSlot(1, "m")' aria-label='Operator for constraint 2'> <option value="c" selected>is</option> <option value="nc">is not</option> <option value="a">has any value</option> <option value="n">has no value</option> </select> <div id="mkeywordInput1" style="display:none" class="flexRow"> <select id="mmdKeywordOp1" onchange="updateForOp(1, 'mmdKeywordOp1', 'mmdSubstringAC1', 'm')" aria-label='Operator for constraint 2'> <option value="enum" selected>Exact Match</option> <option value="substr">Substring Match</option> </select> <div class = "mdSubstringInput" id="mmdSubstringAC1"> <input id="mmdKeyword1" type="text" aria-label='Value for constraint 2'> <div id="mmdKWContainer1"></div> </div> </div> <div id="mnumericInput1" style="display:none" class="flexRow"> <select id="mmdNumOp1" onchange="updateForOp(1, 'mmdNumOp1', 'mmdNum1', 'm')" aria-label='Numeric operator for constraint 2'> <option value="e" selected>= (approx.)</option> <option value="lt"><</option> <option value="lte">≤</option> <option value="gt">></option> <option value="gte">≥</option> <option value="enum">Select Values</option> </select> <input id="mmdNum1" type="text" aria-label='Value for constraint 2'> </div> <div id="mmdEnumContainer1" style="display:none"> <select id="mmdEnum1" multiple aria-label='Value for constraint 2'> </select> </div> </div> </div> <div id="mclause2" style="display:none"> <select id="mconnector2" aria-label='Connector for constraint 3'> <option value='and' selected>AND</option> <option value='or'>OR</option> </select> <input id="mmdDelete2" type="button" value="Remove Constraint" onclick='mdRemoveClause(2, "m")' aria-label='Remove Constraint 3'> <br> <div class="flexRowWrap"> <select id="mmdSlot2" onChange='updateMetadataSlot(2, "m")' aria-label='Property for constraint 3'> <option value=false selected>Select Property</option> </select> <select id="mmdConstraint2" onChange='updateMetadataSlot(2, "m")' aria-label='Operator for constraint 3'> <option value="c" selected>is</option> <option value="nc">is not</option> <option value="a">has any value</option> <option value="n">has no value</option> </select> <div id="mkeywordInput2" style="display:none" class="flexRow"> <select id="mmdKeywordOp2" onchange="updateForOp(2, 'mmdKeywordOp2', 'mmdSubstringAC', 'm')" aria-label='Operator for constraint 3'> <option value="enum" selected>Exact Match</option> <option value="substr">Substring Match</option> </select> <div class = "mdSubstringInput" id="mmdSubstringAC2"> <input id="mmdKeyword2" type="text" aria-label='Value for constraint 3'> <div id="mmdKWContainer2"></div> </div> </div> <div id="mnumericInput2" style="display:none" class="flexRow"> <select id="mmdNumOp2" onchange="updateForOp(2, 'mmdNumOp2', 'mmdNum2', 'm')" aria-label='Numeric operator for constraint 3'> <option value="e" selected>= (approx.)</option> <option value="lt"><</option> <option value="lte">≤</option> <option value="gt">></option> <option value="gte">≥</option> <option value="enum">Select Values</option> </select> <input id="mmdNum2" type="text" aria-label='Value for constraint 3'> </div> <div id="mmdEnumContainer2" style="display:none"> <select id="mmdEnum2" multiple aria-label='Value for constraint 3'> </select> </div> </div> </div> <div id="mclause3" style="display:none"> <select id="mconnector3" aria-label='Connector for constraint 4'> <option value='and' selected>AND</option> <option value='or'>OR</option> </select> <input id="mmdDelete3" type="button" value="Remove Constraint" onclick='mdRemoveClause(3, "m")' aria-label='Remove Constraint 4'> <br> <div class="flexRowWrap"> <select id="mmdSlot3" onChange='updateMetadataSlot(3, "m")' aria-label='Property for constraint 4'> <option value=false selected>Select Property</option> </select> <select id="mmdConstraint3" onChange='updateMetadataSlot(3, "m")' aria-label='Operator for constraint 4'> <option value="c" selected>is</option> <option value="nc">is not</option> <option value="a">has any value</option> <option value="n">has no value</option> </select> <div id="mkeywordInput3" style="display:none" class="flexRow"> <select id="mmdKeywordOp3" onchange="updateForOp(3, 'mmdKeywordOp3', 'mmdSubstringAC3', 'm')" aria-label='Operator for constraint 4'> <option value="enum" selected>Exact Match</option> <option value="substr">Substring Match</option> </select> <div class = "mdSubstringInput" id="mmdSubstringAC3"> <input id="mmdKeyword3" type="text" aria-label='Value for constraint 4'> <div id="mmdKWContainer3"></div> </div> </div> <div id="mnumericInput3" style="display:none" class="flexRow"> <select id="mmdNumOp3" onchange="updateForOp(3, 'mmdNumOp3', 'mmdNum3', 'm')" aria-label='Numeric operator for constraint 4'> <option value="e" selected>= (approx.)</option> <option value="lt"><</option> <option value="lte">≤</option> <option value="gt">></option> <option value="gte">≥</option> <option value="enum">Select Values</option> </select> <input id="mmdNum3" type="text" aria-label='Value for constraint 4'> </div> <div id="mmdEnumContainer3" style="display:none"> <select id="mmdEnum3" multiple aria-label='Value for constraint 4'> </select> </div> </div> </div> <div id="mclause4" style="display:none"> <select id="mconnector4" aria-label='Connector for constraint 5'> <option value='and' selected>AND</option> <option value='or'>OR</option> </select> <input id="mmdDelete4" type="button" value = "Remove Constraint" onclick='mdRemoveClause(4, "m")' aria-label='Remove Constraint 5'> <br> <div class="flexRowWrap"> <select id="mmdSlot4" onChange='updateMetadataSlot(4, "m")' aria-label='Property for constraint 5'> <option value=false selected>Select Property</option> </select> <select id="mmdConstraint4" onChange='updateMetadataSlot(4, "m")' aria-label='Operator for constraint 5'> <option value="c" selected>is</option> <option value="nc">is not</option> <option value="a">has any value</option> <option value="n">has no value</option> </select> <div id="mkeywordInput4" style="display:none" class="flexRow"> <select id="mmdKeywordOp4" onchange="updateForOp(4, 'mmdKeywordOp4', 'mmdSubstringAC4', 'm')" aria-label='Operator for constraint 5'> <option value="enum" selected>Exact Match</option> <option value="substr">Substring Match</option> </select> <div class = "mdSubstringInput" id="mmdSubstringAC4"> <input id="mmdKeyword4" type="text" aria-label='Value for constraint 5'> <div id="mmdKWContainer4"></div> </div> </div> <div id="mnumericInput4" style="display:none"> <select id="mmdNumOp4" onchange="updateForOp(4, 'mmdNumOp4', 'mmdNum4', 'm')" aria-label='Numeric operator for constraint 5'> <option value="e" selected>= (approx.)</option> <option value="lt"><</option> <option value="lte">≤</option> <option value="gt">></option> <option value="gte">≥</option> <option value="enum">Select Values</option> </select> <input id="mmdNum4" type="text" aria-label='Value for constraint 5'> </div> <div id="mmdEnumContainer4" style="display:none"> <select id="mmdEnum4" multiple aria-label='Value for constraint 5'> </select> </div> </div> </div> <div id="mclause5" style="display:none"> <select id="mconnector5" aria-label='Connector for constraint 6'> <option value='and' selected>AND</option> <option value='or'>OR</option> </select> <input id="mmdDelete5" type="button" value="Remove Constraint" onclick='mdRemoveClause(5, "m")' aria-label='Remove Constraint 6'> <br> <div class="flexRowWrap"> <select id="mmdSlot5" onChange='updateMetadataSlot(5, "m")' aria-label='Property for constraint 6'> <option value=false selected>Select Property</option> </select> <select id="mmdConstraint5" onChange='updateMetadataSlot(5, "m")' aria-label='Operator for constraint 6'> <option value="c" selected>is</option> <option value="nc">is not</option> <option value="a">has any value</option> <option value="n">has no value</option> </select> <div id="mkeywordInput5" style="display:none" class="flexRow"> <select id="mmdKeywordOp5" onchange="updateForOp(5, 'mmdKeywordOp5', 'mmdSubstringAC5', 'm')" aria-label='Operator for constraint 6'> <option value="enum" selected>Exact Match</option> <option value="substr">Substring Match</option> </select> <div class = "mdSubstringInput" id="mmdSubstringAC5"> <input id="mmdKeyword5" type="text" aria-label='Value for constraint 6'> <div id="mmdKWContainer5"></div> </div> </div> <div id="mnumericInput5" style="display:none" class="flexRow"> <select id="mmdNumOp5" onchange="updateForOp(5, 'mmdNumOp5', 'mmdNum5', 'm')" aria-label='Numeric operator for constraint 6'> <option value="e" selected>= (approx.)</option> <option value="lt"><</option> <option value="lte">≤</option> <option value="gt">></option> <option value="gte">≥</option> <option value="enum">Select Values</option> </select> <input id="mmdNum5" type="text" aria-label='Value for constraint 6'> </div> <div id="mmdEnumContainer5" style="display:none"> <select id="mmdEnum5" multiple aria-label='Value for constraint 6'> </select> </div> </div> </div> <br> <div class="flexRow"> <input id="maddClause" type="button" value = "Add Constraint" onclick='mdAddClause("m")' style="display:none"> <input id="mmdSearch" type="button" value = "Find Organisms" onclick = 'processMdQuery(true, "m")'> </div> <div id="mmdResults" class='yui3-skin-sam'></div> </div> <div id="multiorgSavedTab" class='multiorgselectorTab' style="overflow-y:auto"> <div style="padding-bottom:20px"> <span>Database lists include both predefined lists and lists that are saved as SmartTables that you can edit from your <a href="/smarttables" target="new.window">My SmartTables</a> page. To add all organisms from a saved list, check the box next to the list name and then click the "Add" button. </span> </div> <div id="multiorgSavedTree" class="ygtv-checkbox"></div> <div class="requiresLogin" style="padding-top:50px"> <span class="requiresNoSavedOrglist requiresLogin"> You have no saved database lists </span> </div> <div class="requiresNotLoggedIn" style="padding-top:50px"> Log in and reload this page to access your saved database lists. </div> </div> </div> <div id="tierKey" style="padding-top:3px"> <span class="tier1">Tier 1</span> and <span class="tier2">Tier 2</span> databases are displayed with orange and blue backgrounds, respectively. </div> </div> <div class='buttons flexCol' style="gap:4px;margin:3px;"> <div id="multiorgSelectAllRow"> <input type="button" id="multiorgSelectAllBtn" class="disableWhenAllSelected" value="Select All" onclick="multiorgSelectAll()"> </div> <input type="button" id="multiorgAddToList" class="disableWhenAllSelected" value="Add →" onclick="addNewSelections()"> <input type="button" id="multiorgDeleteFromList" class="disableWhenAllSelected" value="Remove ←" onclick="deleteMultiorgOptions(false)"> <input type="button" id="multiorgClearAll" value="Clear All" onclick="deleteMultiorgOptions(true)"> <input type="button" id="moveup" value="Up ↑" onclick="moveUpOption()"> <input type="button" id="movedown" value="Down ↓" onclick="moveDownOption()"> </div> <div> <label for="multiorgSelection"><h3>Current Selection</h3></label> <span id="multiNumSelected">0</span> databases or taxa currently selected. <p> <div id='multiorgSelectionDiv'> <select multiple id="multiorgSelection"> </select> </div> <div class="requiresLogin" id="rememberAsST"> <fieldset style="border:none;padding:0"> <legend style="padding-top:3px"> Remember Selection as SmartTable:</legend> <label> <input type="radio" name="stSave" value="new" checked> Create New </label> <label> <input type="radio" name="stSave" value="old"> Update Existing </label> <div style="padding-top:3px"> <input type="text" id="orglistname" style="width:200px" placeholder="Enter SmartTable Name"> <select id="savedOrglistUpdate" class="savedOrglistSelectEl" aria-label="Select an organism SmartTable to update" style="display:none"> </select> <input type="button" value="Save" title="Clicking this button will save or update the specified organism SmartTable to refer to the currently selected databases. It will not close this dialog or submit your choices. If no databases are currently selected, clicking this button will cause the named SmartTable to be deleted. SmartTables saved here can be accessed from the My Lists tab."> </div> </fieldset> </div> <div class="requiresNotLoggedIn" style="padding-top:3px"> Note: if you create a user account and log in, you can save your database lists for next time. </div> </div> </div> </form> </div> </div> <script type="text/javascript"> multiorg_maxOrgs = 70 </script>  <script type="text/javascript"> if (forceOrgID && forceOrgID != "DEFAULT") setOrganism(forceOrgID); </script> <script src="https://unpkg.com/@popperjs/core@2"></script> <script src="https://unpkg.com/tippy.js@6"></script> <script> /* following relates to tooltips for template-top-menubar */ var subTipContent; subTipContent = "You are not connected to a paid subscription, which limits your access to BioCyc. The EcoCyc database is free."; var accelTipContent = "Create a free account and receive one month of free access to BioCyc. Even if your institution already subscribes to BioCyc, you still need to create an account for ongoing access."; if (subTipContent) { tippy('#subscribe', { content: subTipContent, theme: 'biocyc', placement: 'bottom', plugins: [hideOnEsc] }); } tippy('#account', { content: accelTipContent, theme: 'biocyc', placement: 'bottom', plugins: [hideOnEsc] }); /* following relates to tooltip for MetaCyc */ tippy('#metacycRef', { theme: 'biocyc', content: "MetaCyc is a curated database of metabolic enzymes and pathways from all domains of life.", placement: 'right', plugins: [hideOnEsc] }); </script> <script SRC="/yui/build/button/button-min.js"></script><script SRC="cgbrowser.js"></script><script TYPE="text/javascript" SRC="https://code.jquery.com/ui/1.11.4/jquery-ui.min.js"></script><link REL="stylesheet" TYPE="text/css" HREF="https://code.jquery.com/ui/1.11.4/themes/smoothness/jquery-ui.css"></body></html>

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