wwPDB Deposition

<!DOCTYPE html> <html lang="en"> <head> <title>wwPDB Deposition </title> <meta charset="UTF-8" /> <link href="/deposition/static//images/favicon.ico" rel="icon" type="image/x-icon" />  <script src="/deposition/static//js/jquery-1.7.2-min.js"></script> <script src="/deposition/static//js/jquery-ui-1.8.21.custom.min.js"></script> <script src="/deposition/static//js/jquery-ui-combo.js"></script> <script src="/deposition/static//js/jquery.layout-latest.js"></script> <script src="/deposition/static//js/jquery.dynatree.min.js"></script> <script src="/deposition/static//js/jquery.cookie.js"></script> <script src="/deposition/static//js/jquery.qtip.min.js"></script> <script src="/deposition/static//js/highcharts/highcharts.js"></script> <script src="https://www.gstatic.com/charts/loader.js"></script> <link type="text/css" href="/deposition/static//css/jquery-ui-1.8.21.custom.css" rel="stylesheet" /> <link type="text/css" href="/deposition/static//css/basicTemplate.css" rel="stylesheet" /> <link type="text/css" href="/deposition/static//css/layout-default.css" rel="stylesheet" /> <link type="text/css" href="/deposition/static//css/jquery.qtip.min.css" rel="stylesheet" /> <link href="/deposition/static//css/skin-vista/ui.dynatree.css" rel="stylesheet" type="text/css" id="skinSheet" /> <link type="text/css" href="/deposition/static//css/orcid-widget.css" rel="stylesheet" /> <link type="text/css" href="/deposition/static//css/pagination.css" rel="stylesheet" /> <script> STATIC_URL = "/deposition/static/"; 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function generateCaptua() { //Generates the captcha function var a = Math.ceil(Math.random() * 9) + ''; var b = Math.ceil(Math.random() * 9) + ''; var c = Math.ceil(Math.random() * 9) + ''; var d = Math.ceil(Math.random() * 9) + ''; var e = Math.ceil(Math.random() * 9) + ''; var code = a + b + c + d + e; $("#captcha_check").val(code); $("#txt_captcha_span").html(code); } $(document).ready(function () { generateCaptua(); setupPasswordDialog(); if ($('.form_success').length != 0) $('#wwpdb_news').hide(); $('#emailBox').show(); }); // wwPDB news section var news_items = "<h2 style=\"color:#136975\">5-character CCD IDs</h2>\n<p>wwPDB has begun issuing 5-character alphanumeric accession codes for CCD IDs. PDB entries containing the\n new 5-character ID codes are only distributed in PDBx/mmCIF and PDBML formats.\n <a href=\"https://www.wwpdb.org/news/news?year=2023#656f4404d78e004e766a96c6\">More information</a>.\n</p>\n\n<h2 style=\"color:#136975\">ORCiD Login</h2>\n<p>Contact authors can now use ORCiDs to authenticate OneDep access without the need for password sharing\n to view and access all their depositions in which the ORCiD has been provided for the contact author.\n <a href=\"https://www.wwpdb.org/news/news?year=2023#657a2266d78e004e766a96cb\">More information</a>.\n</p>\n"; if ($.isEmptyObject(news_items)) { $('#wwpdb_news').hide(); } else { $('#depui_news').html(news_items); $('#wwpdb_news').show(); } } // init() function checkcaptcha() { var why = ""; var captchaInput = $("#captcha_input").val(); if (captchaInput == "") { why += "The security code should not be empty.\n"; } if (captchaInput != "") { if (ValidCaptcha(captchaInput) == false) { why += "The security code did not match.\n"; } } if (why != "") { alert(why); return false; } return true; } // Validate the Entered input aganist the generated security code function function ValidCaptcha() { var str1 = removeSpaces($("#captcha_check").val()); var str2 = removeSpaces($("#captcha_input").val()); return str1 == str2; } // Remove the spaces from the entered and generated code function removeSpaces(string) { return string.split(' ').join(''); } function compositeQuestion() { var emdbCode = $('[name="EMDB"]').attr('checked'); if (emdbCode) { var subMethod = $('[name|=EM]').attr('name'); var compositeAllowed = ['EM-single_part', 'EM-subtomogram'].includes(subMethod) if (compositeAllowed) { $('#composite_question').show(); if ($('[name="composite_question"]').filter(':checked').val() === undefined) { $('[name="composite_question"]').filter('[value="No"]').prop('checked', true); } compositeAnswered() } else { $('#composite_question').hide(); $('#composite_question_explanation').hide(); $('[name="composite_question"]').prop('checked', false); } } else { $('#composite_question').hide(); $('#composite_question_explanation').hide(); $('[name="composite_question"]').prop('checked', false); } } function compositeAnswered() { var compositeQuestion = $('[name="composite_question"]').filter(':checked').val(); if (compositeQuestion === "Composite map") { $('#composite_question_explanation').show(); } else { $('#composite_question_explanation').hide(); } } function codesUpdated() { var bmrbCode = $('[name="BMRB"]').attr('checked'); var pdbCode = $('[name="PDB"]').attr('checked'); var emdbCode = $('[name="EMDB"]').attr('checked'); var pdbSelected = $('[name=XRAY]').attr('checked') == 'checked' || $('[name=ND]').attr('checked') == 'checked' || $('[name=FD]').attr('checked') == 'checked' || $('[name=SS]').attr('checked') == 'checked'; var nmrSelected = $('[name=NMR]').attr('checked') == 'checked' || $('[name=SSNMR]').attr('checked') == 'checked'; var emSelected = $('[name|=EM]').attr('checked') == 'checked'; var ecSelected = $('[name=EC]').attr('checked') == 'checked'; var nmrExclusiveSelected = nmrSelected && !(emSelected || ecSelected); //var emExclusiveSelected = !nmrSelected && (emSelected || ecSelected); var pdbQuestion = $('[name="pdb_question_radio"]').filter(':checked').val(); if (nmrExclusiveSelected && pdbQuestion !== 'Y') { //if ( bmrbCode && !pdbCode && !emdbCode ){ $('#sub_button_pdbj').show(); $('#sub_button_bmrb').show(); $('#sub_button').hide(); } else { $('#sub_button_pdbj').hide(); $('#sub_button_bmrb').hide(); $('#sub_button').show(); } if (emSelected || ecSelected || nmrSelected) { var nmrdatadep = $('[name="nmrdatadep"]').filter(':checked').val(); var emmapdep = $('[name="emmapdep"]').filter(':checked').val(); if (nmrExclusiveSelected) { if (pdbQuestion === undefined) { $('#sub_button_pdbj').prop('disabled', true).fadeTo("slow", 0.5); $('#sub_button_bmrb').prop('disabled', true).fadeTo("slow", 0.5); } else if (pdbQuestion === 'N') { $('#sub_button_pdbj').prop('disabled', false).fadeTo("slow", 1.0); $('#sub_button_bmrb').prop('disabled', false).fadeTo("slow", 1.0); } else if (pdbQuestion === 'Y') { if (nmrdatadep === undefined) { $('#sub_button').prop('disabled', true).fadeTo("slow", 0.5); } else { $('#sub_button').prop('disabled', false).fadeTo("slow", 1.0); } } } else { if (pdbQuestion === undefined || (pdbQuestion === 'Y' && ((nmrSelected && nmrdatadep === undefined) || ((emSelected || ecSelected) && emmapdep === undefined)))) { $('#sub_button').prop('disabled', true).fadeTo("slow", 0.5); } else { if (!(nmrSelected && (emSelected || ecSelected) && nmrdatadep === undefined && emmapdep === undefined)) { $('#sub_button').prop('disabled', false).fadeTo("slow", 1.0); } } } // if related BMRB or EMDB code provided allow submission on focus lost if (emSelected || ecSelected) { $('[name="related_emdb"]').blur(function () { if ($('[name="related_emdb"]').val() !== '' && $('[name="pdb_question_radio"]').filter(':checked').val() !== undefined) $('#sub_button').prop('disabled', false).fadeTo("slow", 1.0); }); } if (nmrSelected) { $('[name="related_bmrb"]').blur(function () { if ($('[name="related_bmrb"]').val() !== '' && $('[name="pdb_question_radio"]').filter(':checked').val() !== undefined) $('#sub_button').prop('disabled', false).fadeTo("slow", 1.0); }); } } /* if (nmrSelected){ $('#related_bmrb').show() } else { $('#related_bmrb').hide() } if (nmrExclusiveSelected){ $('#nmr_question').show() } else { $('#nmr_question').hide() $('[name="nmr_question_radio"]').attr('checked',false) } if (emExclusiveSelected){ $('#em_question').show() } else { $('#em_question').hide() $('[name="em_question_radio"]').attr('checked',false) } */ compositeQuestion(); } function pdbQuestionNo() { $('[name="PDB"]').prop('checked', false); var nmrSelected = $('[name="NMR"]').prop('checked') || $('[name="SSNMR"]').prop('checked'); var emcSelected = $('[name|=EM]').prop('checked') || $('[name="EC"]').prop('checked'); if (nmrSelected && emcSelected) { alert("You cannot combine EM or EC with NMR if you have experimental data only - please deposit this data separately."); $('[name="pdb_question_radio"][value="Y"]').prop('checked', true); pdbQuestionYes(); } else { $('#nmrdatadep').hide(); $('#BMRBrelated').hide(); $('#emmapdep').hide(); $('#ecmapdep').hide(); $('#EMDBrelated').hide(); if (emcSelected) { $('[name="EMDB"]').prop('checked', true); } codesUpdated(); } } function pdbQuestionYes() { var nmrSelected = $('[name="NMR"]').prop('checked') || $('[name="SSNMR"]').prop('checked'); var emSelected = $('[name|=EM]').prop('checked'); var ecSelected = $('[name="EC"]').prop('checked'); $('[name="PDB"]').prop('checked', true); if (nmrSelected) { $('#nmrdatadep').show(); if ($('[name="nmrdatadep"]').filter(':checked').val() === 'Y') { $('#BMRBrelated').show(); } } if (emSelected || ecSelected) { if (emSelected) { $('#emmapdep').show(); $('#ecmapdep').hide(); } if (ecSelected) { $('#emmapdep').hide(); $('#ecmapdep').show(); } if ($('[name="emmapdep"]').filter(':checked').val() === 'Y') { $('[name="EMDB"]').prop('checked', false); $('#EMDBrelated').show(); } } codesUpdated(); } function noRelated(codeType) { if (codeType === 'noEMDB') { $('[name="EMDB"]').prop('checked', false); } else { $('[name="' + codeType + '"]').prop('checked', true); } resetRelated(codeType); codesUpdated(); } function getRelated(codeType) { if ($('[name="pdb_question_radio"]').filter(':checked').val() !== undefined) { $('#sub_button').prop('disabled', true).fadeTo("slow", 0.5); } $('[name="' + codeType + '"]').prop('checked', false); $('#' + codeType + 'related').show(); compositeQuestion(); } function resetRelated(codeType) { $('#' + codeType + 'related').hide(); $('[name="related_' + codeType.toLowerCase() + '"]').val(null); $('#related' + codeType.toLowerCase() + 'error').hide(); } function resetCodes() { var codes = ['BMRB', 'PDB', 'EMDB']; for (var i = 0; i < codes.length; i++) { $('[name=' + codes[i] + ']').attr('disabled', true) .attr('checked', false); } } /* function meaningfulQuestion(){ var diffraction = $('[name=XRAY]').attr('checked') == 'checked' || $('[name=ND]').attr('checked') == 'checked' || $('[name=FD]').attr('checked') == 'checked'; var nmrSelected = $('[name=NMR]').attr('checked') == 'checked' || $('[name=SSNMR]').attr('checked') == 'checked'; var emSelected = $('[name|=EM]').attr('checked') == 'checked'; var ecSelected = $('[name=EC]').attr('checked') == 'checked'; var emExclusive = (emSelected || ecSelected) && ! (diffraction || nmrSelected); var nmrExclusive = nmrSelected && ! (diffraction || emSelected || ecSelected); var coordinates = diffraction || (nmrSelected && (emSelected || ecSelected)); var options = []; var experimental = []; var option = ""; if ( coordinates ) { if ( diffraction ) { experimental.push("diffraction"); } if ( nmrSelected ) { experimental.push("NMR"); } if ( emSelected || ecSelected) { experimental.push("EM volume map"); } options.push("Model coordinates and experimental " + experimental.join(" and ") + " data."); } else { if ( nmrExclusive ) { options.push("Model coordinates and NMR experimental data."); options.push("NMR experimental data only."); } if ( emExclusive ) { options.push("Model coordinates and EM volume map."); options.push("EM volume map only."); } } } */ // No model is needed for tomograms, then it`s necessary to simulate the behavior of clicking the No[...] option on model coordinates radio button in order to make this option disappear. function updateUponTomography(element) { if ($(element).val() === "EM-tomography") { $("[name=pdb_question_radio][value=N]").prop("checked", true); $("[name=pdb_question_radio][value=N]").click(); $('#pdb_question_div').hide(); } else { $('#pdb_question_div').show(); } } function selectCodes() { resetCodes(); var pdbSelected = $('[name=XRAY]').attr('checked') == 'checked' || // $('[name=SS]').attr('checked') == 'checked' || $('[name=ND]').attr('checked') == 'checked' || $('[name=FD]').attr('checked') == 'checked'; var nmrSelected = $('[name=NMR]').attr('checked') == 'checked' || $('[name=SSNMR]').attr('checked') == 'checked'; var emSelected = $('[name|=EM]').attr('checked') == 'checked'; var ecSelected = $('[name=EC]').attr('checked') == 'checked'; $('[name=PDB]').prop('checked', pdbSelected) .prop('disabled', true); if (nmrSelected) { //if (pdbSelected === false) { // $('[name=PDB]').attr('checked', true ) // .attr('disabled', false); //} $('#nmrdatadep').show(); if ($('[name="nmrdatadep"]').filter(':checked').val() !== 'Y') { $('[name=BMRB]').prop('checked', true) .prop('disabled', true); } } else { $('#nmrdatadep').hide(); $('[name="nmrdatadep"]').prop('checked', false); resetRelated('BMRB'); } if (ecSelected || emSelected) { if (emSelected) { $('#emmapdep').show(); $('#ecmapdep').hide(); } if (ecSelected) { $('#emmapdep').hide(); $('#ecmapdep').show(); } if ($('[name="emmapdep"]').filter(':checked').val() !== 'Y') { $('[name=EMDB]').prop('checked', true) .prop('disabled', true); } } else { $('#emmapdep').hide(); $('#ecmapdep').hide(); $('[name="emmapdep"]').prop('checked', false); resetRelated('EMDB'); } if (emSelected) { var node = $('[name|=EM]').parent(); if ($('#emsubmethod').length == 0) { node.append('<div id="emsubmethod"> \ <input type="radio" name="emsubmethod" value="EM-helical" onclick="$(\'[name|=EM]\').attr(\'name\', \'EM-helical\'); $(this).parent().css(\'color\',\'\'); updateUponTomography(this);" /><label>Helical<\/label><br /> \ <input type="radio" name="emsubmethod" value="EM-single_part" onclick="$(\'[name|=EM]\').attr(\'name\', \'EM-single_part\'); $(this).parent().css(\'color\',\'\'); updateUponTomography(this);" /><label>Single particle<\/label><br />\ <input type="radio" name="emsubmethod" value="EM-subtomogram" onclick="$(\'[name|=EM]\').attr(\'name\', \'EM-subtomogram\'); $(this).parent().css(\'color\',\'\'); updateUponTomography(this);" /><label>Subtomogram averaging<\/label><br />\ <input type="radio" name="emsubmethod" value="EM-tomography" onclick="$(\'[name|=EM]\').attr(\'name\', \'EM-tomography\'); $(this).parent().css(\'color\',\'\'); updateUponTomography(this);" /><label>Tomography<\/label><br />\ '); node.find('#emsubmethod').css('color', 'red'); $('[name="emsubmethod"]').change(compositeQuestion); } //if(pdbSelected === false && nmrSelected === false){ // $('[name=PDB]').attr('disabled', false); //} //$('[name=EMDB]').attr('checked', true ) // .attr('disabled', true); } else { $('#emsubmethod').remove(); } if (emSelected || ecSelected || nmrSelected) { if ($('#pdb_question_div').length === 0) { $('#emmapdep').before('<div id="pdb_question_div" style="padding-left: 3em; padding-top: 1em;">Are you depositing coordinates with this submission?<br /> \ <input type="radio" name="pdb_question_radio" value="N" onclick="pdbQuestionNo();" /><label>No, experimental data only<\/label><br /> \ <input type="radio" name="pdb_question_radio" value="Y" onclick="pdbQuestionYes();" /><label>Yes<\/label><br /><br /> \ <\/div>'); } if (pdbSelected) { $('[name="pdb_question_radio"][value="Y"]').prop('checked', true); } else { $('[name="pdb_question_radio"][value="Y"]').prop('checked', false); } if (nmrSelected && (emSelected || ecSelected)) { $('[name="pdb_question_radio"][value="Y"]').prop('checked', true); pdbQuestionYes(); } } else { $('#pdb_question_div').remove(); $('#sub_button').prop('disabled', false).fadeTo("slow", 1.0); } codesUpdated(); } function sub() { $('.form_error').hide(); $('.form_success').hide(); var valid = true; var pdbChecked = $('[name=PDB]').attr('checked'); var emdbChecked = $('[name=EMDB]').attr('checked'); var bmrbChecked = $('[name=BMRB]').attr('checked'); var pdbSelected = $('[name=XRAY]').attr('checked') == 'checked' || $('[name=ND]').attr('checked') == 'checked' || $('[name=FD]').attr('checked') == 'checked'; var nmrSelected = $('[name=NMR]').attr('checked') == 'checked' || $('[name=SSNMR]').attr('checked') == 'checked'; var emSelected = $('[name|=EM]').attr('checked') == 'checked'; var ecSelected = $('[name=EC]').attr('checked') == 'checked'; var solutionScatter = $('[name=SS]').attr('checked') == 'checked'; var email = $('[name=email]').val() if (email.indexOf('@') == -1 || email.indexOf('.') == -1) { $('#emailerror').show(); valid = false; } var privacy = $('[name=privacy]').attr('checked') if (privacy != 'checked') { $('#privacyerror').show(); valid = false; } var password = $('[name=password]').val(); if ((password.length > 0 && password.length < 6) || (password.length > 16)) { $('#password1error').show(); valid = false; } else if (!(/^[a-zA-Z0-9]*$/.test(password))) { $('#password2error').show(); valid = false; } var captcha = removeSpaces($('[name=captcha_input]').val()) var captcha2 = $('[name=captcha_check]').val() if (captcha.length <= 0 || (captcha != captcha2)) { $('#captcha_error').show(); valid = false; } var location2 = $('#location2'); //if ( $('[name=location]').val() === 'Select...'){ if (location2.val() === 'Select...') { $('#locationerror').show(); valid = false; } if (!pdbSelected && !nmrSelected && !emSelected && !solutionScatter && !ecSelected) { $('#dataerror').show(); valid = false; } if (emSelected && $('[name=emsubmethod]:checked').length <= 0) { $('#dataerror').show(); valid = false; } if (!emdbChecked && !pdbChecked) { if (!bmrbChecked) { $('#ids1error').show(); valid = false; } else { $('#ids2error').show(); valid = false; } } if (!emdbChecked && (emSelected || ecSelected) && $('[name="emmapdep"]').filter(':checked').val() === 'Y') { var emdb_code = $('[name="related_emdb"]').val().trim(); //var emdb_format = new RegExp('^[Ee][Mm][Dd]-[0-9]{4}$'); var emdb_format = new RegExp('^[Ee][Mm][Dd]-[0-9]{4,5}$'); if (!emdb_format.test(emdb_code)) { $('#relatedemdberror').show(); valid = false; } } if (!bmrbChecked && nmrSelected && $('[name="nmrdatadep"]').filter(':checked').val() === 'Y') { var bmrb_code = $('[name="related_bmrb"]').val().trim(); //var bmrb_format = new RegExp('^[0-9]+$'); var bmrb_format = new RegExp('^[0-9]{1,5}$'); if (!bmrb_format.test(bmrb_code)) { $('#relatedbmrberror').show(); valid = false; } } if (emdbChecked && ['EM-single_part', 'EM-subtomogram'].includes($('[name|=EM]').attr('name')) && !$('[name="composite_question"]').filter(':checked').val() ) { $('#composite_question_error').show(); valid = false; } if (!valid) { return; } // It is necesary to remove attribute 'disabled'. Otherwise the data is not sent in the form codes = ['BMRB', 'PDB', 'EMDB']; for (var i = 0; i < codes.length; i++) { $('[name=' + codes[i] + ']').removeAttr('disabled'); } location2.prop("disabled", false); $('[name=start]').submit(); } // Missing password dialog box function setupPasswordDialog() { var dialog; dialog = $("#passwordDialog").dialog({ autoOpen: false, modal: true, resizable: false }); setupPasswordDialogButtons(false); } function setupPasswordDialogButtons(state) { var dialog = $("#passwordDialog"); if (state === false) { dialog.dialog({ buttons: { Submit: forgotPasswordRequest, Cancel: function () { dialog.dialog("close"); } } }); } else { dialog.dialog({ buttons: { Close: function () { dialog.dialog("close"); } } }); } } function showPasswordDialog() { // Copy the DepID field var depid = document.getElementById('loginDepID').value; $("#forgotDepID").val(depid); // Clear the email address in form... $("#forgotEmail").val(""); // Clear feedback message showPasswordDialogResult(false, ""); $("#passwordDialog").dialog("open"); // Reset buttons in case of reopening interface setupPasswordDialogButtons(false); // Allow input passwordDialogPreventInput(false); } // Prevent editing of input dialog function passwordDialogPreventInput(state) { document.getElementById('forgotDepID').readOnly = state; document.getElementById('forgotEmail').readOnly = state; } // Displays result. function showPasswordDialogResult(err, message) { // err is a boolean - indicates to highlight var sel = $("#passwordFeedback"); sel.html(message); if (err) { sel.addClass("ui-state-error"); } else { sel.removeClass("ui-state-error"); if (message !== "") { sel.addClass("ui-state-highlight"); setTimeout(function () { sel.removeClass("ui-state-highlight", 1500); }, 500); } } } // get the value of the URL parameter param var getUrlParameter = function getUrlParameter(param) { var pageUrl = decodeURIComponent(window.location.search.substring(1)), urlVariables = pageUrl.split('&'), parameterName, i; for (i = 0; i < urlVariables.length; i++) { parameterName = urlVariables[i].split('='); if (parameterName[0] === param) { return parameterName[1] === undefined ? true : parameterName[1]; } } }; // function executed when document ready. function that handles site redirections $(function () { // error2 is set from newsubmission $('#site_select').show(); $('#new_dep_form').hide(); $('#new_dep_form_par').hide(); // if depID belongs to another deposition site, redirect to this site // check if depID is provided in URL var url_depid = getUrlParameter('depid'); if (url_depid !== undefined) { $("#loginDepID").val(url_depid); } // check if country is provided in URL var url_country = getUrlParameter('country'); if (url_country === undefined) { // select country and redirect if not already at the right site $("#location1").on("change", function () { //$('body').on("change", "#location1", function() { var selected_country = this.value; if (selected_country !== 'Select...') { var is_correct_country = confirm("You selected " + selected_country + ".\n\nClick 'OK' if the selected country is correct, otherwise click 'Cancel'."); if (is_correct_country) { $('#wwpdb_news').hide(); geo_redirect(selected_country); } } }); } else { geo_redirect(url_country); } // geochart of the wwPDB regions var pdb_site = get_pdb_site(); // if the library is not available, load appropriate geochart image var is_loader = $('script[src="https://www.gstatic.com/charts/loader.js"]').length; if (is_loader > 0 && typeof google === "object" && typeof google.charts === "object" && typeof google.charts.load === "function" && typeof google.charts.setOnLoadCallback === "function") { google.charts.load('current', { 'packages': ['geochart'] }); //google.charts.setOnLoadCallback(regions_chart); google.charts.setOnLoadCallback(function () { regions_chart(pdb_site); }); } else { switch (pdb_site) { case 'pdbe': insert_geochart_image('geochartPDBE.png'); break; case 'rcsb': insert_geochart_image('geochartRCSB.png'); break; case 'pdbj': insert_geochart_image('geochartPDBJ.png'); break; default: insert_geochart_image('geochartAllRegions.png'); } } }); function get_pdb_site() { var this_site = "WWPDB_DEPLOY_PRODUCTION_RU".toUpperCase(); var pdb_site = 'all'; if (this_site.indexOf('PDBE') > -1) { pdb_site = 'pdbe'; } else if (this_site.indexOf('PDBJ') > -1) { pdb_site = 'pdbj'; } else if (this_site.indexOf('BMRB') > -1) { pdb_site = 'rcsb'; } else if (this_site.indexOf('RCSB') > -1 || this_site.indexOf('WWPDB_DEPLOY') > -1 || this_site.indexOf('WWPDB_DEPUI') > -1) { pdb_site = 'rcsb'; } return pdb_site; } function insert_geochart_image(geochart) { var img = document.createElement("IMG"); img.src = "/deposition/static//images/" + geochart; img.alt = "Region chart"; document.getElementById('regions').appendChild(img); } function geo_redirect(country) { if (country === "") return; var dat = { country: country, redirection: 'noredirect', return_status: 'unknown' }; $.ajax({ url: BASE_URL + '/get_site', type: 'GET', datatype: 'json', data: dat, success: function (dat) { if (dat.return_status === "ok") { process_redirection(dat.country, dat.redirection); } else { nice_alert(dat.return_status); } }, error: function () { nice_alert(dat.return_status); } }); } function process_redirection(country, redirect_url) { // given COUNTRY, redirect to the right deposition site (PDBe, PDBj or RCSB) // or stay where you are if at the right website if (country !== 'Select...') { //if (!redirect_url || redirect_url === 'noredirect') { if (redirect_url === 'noredirect') { // stay at this site $('#site_select').hide(); $('#new_dep_form').show(); $('#new_dep_form_par').show(); $('#location2').val(country).prop("disabled", true); } else { site_redirect(redirect_url); } } else { nice_alert("Error: Country undefined"); } } function site_redirect(url) { $('#redirect').css('display', 'block') .empty().append("<br /><b>You will be redirected in 3 seconds...<\/b><br />If you are not redirected, please go to <a href=\'" + url + "\'>" + url + "<\/a>"); setTimeout(function () { window.location = url; }, 3000); } function regions_chart(site) { var options = { region: 'world', resolution: 'continents', //resolution: 'countries', dataMode: 'regions', //displayMode: 'regions', enableRegionInteractivity: 'true', legend: 'none', //colorAxis: {minValue: 1, maxValue: 3, colors: ['yellow', 'lightgreen', 'orange']}, colorAxis: { minValue: 1, maxValue: 2, colors: ['D98787', 'ECE7E7'] }, //colorAxis: {minValue: 1, maxValue: 2, colors: ['62C2A7', 'ECE7E7']}, backgroundColor: 'lightblue', datalessRegionColor: '#f5f5f5', defaultColor: 'grey', tooltip: { textStyle: { color: '#444444' }, trigger: 'focus' } //keepAspectRatio: true, }; var sites = { 'pdbe': [1, 2, 2], 'rcsb': [2, 1, 2], 'pdbj': [2, 2, 1] }; var score = [1, 2, 3]; var data = new google.visualization.DataTable(); data.addColumn('string', 'Continent'); data.addColumn('number', 'Value'); data.addColumn({ type: 'string', role: 'tooltip' }); //var ivalue = new Array(); if (sites[site] !== undefined) { score = sites[site]; } else { options['colorAxis'] = { minValue: 1, maxValue: 3, colors: ['yellow', 'lightgreen', 'orange'] } } data.addRows([ [{ v: '002', f: 'Africa' }, score[0], 'PDBe'] ]); //ivalue['002'] = pdbe; data.addRows([ [{ v: '150', f: 'Europe' }, score[0], 'PDBe'] ]); //ivalue['150'] = pdbe; data.addRows([ [{ v: '019', f: 'Americas' }, score[1], 'RCSB PDB'] ]); //ivalue['019'] = rcsb; data.addRows([ [{ v: '009', f: 'Oceania' }, score[1], 'RCSB PDB'] ]); //ivalue['009'] = rcsb; data.addRows([ [{ v: '142', f: 'Asia' }, score[2], 'PDBj'] ]); //ivalue['142'] = pdbj; var geochart = new google.visualization.GeoChart(document.getElementById('regions')); /*// on click go to website google.visualization.events.addListener(geochart, 'select', function() { var selection = geochart.getSelection(); if (selection.length == 1) { var selectedRow = selection[0].row; var selectedRegion = data.getValue(selectedRow, 0); if(ivalue[selectedRegion] != '') { window.location = ivalue[selectedRegion]; } } });*/ geochart.draw(data, options); } function restart_dep() { // go back to the starting point window.location = "/deposition" } </script> <div id='wwpdb_news' style="display: none;"> <h3 class="ui-widget-header ui-corner-all panel-header-fix">wwPDB news and announcements</h3> <div style="padding: 1em 1em;"> <div id="depui_news" style="width: auto; height: auto;"></div> </div> </div> <h3 class="ui-widget-header ui-corner-all panel-header-fix">Start a new OneDep deposition</h3> <div style="padding: 1em 1em;"> <h3 style="color: darkred;">Welcome to the wwPDB OneDep system!</h3> <p>To continue with an existing deposition, please login on the left.<br />Please note that un-submitted sessions will expire 3 months after last login. Un-submitted sessions and uploaded files will be removed once they expire.</p> <div id="new_dep_form_par"> <p>To start a new deposition, please complete the form below. Upon completion, you will be emailed login information specific to your new deposition.</p> <p style="color: red; font-size:large; font-weight:normal;">Question about an in-progress deposition? For fastest response, login into your session and select the "Communication" page from the left hand navigation panel.</p> </div> <p style='font-weight: bold;'>For requests such as entry release or citation updates, please login to the deposition system and send us a message through the communications section</p> <p>If you have any other feedback, please write to us at <a href="mailto:deposit-help@mail.wwpdb.org?subject=Deposition%20feedback">deposit-help@mail.wwpdb.org</a> <br /></p> <p style="color: green; font-size:medium; font-weight:normal;">Warning: Please note that the current system does not support having multiple sessions open at the same time. To switch between existing sessions please log out using the 'Log out" button in the bottom left corner of the opened deposition.</p> <hr />   <div id="site_select"> <br /><br /> <p>If your structure is determined by these accepted methods, proceed with OneDep deposition: X-Ray Diffraction, Electron Microscopy, Solution NMR, Solid-state NMR, Neutron Diffraction, Electron Crystallography, Fiber Diffraction.</p> <p style="color: #4a86e8; font-size:medium; font-weight:normal;">We strongly recommend that you use ORCiDs login to create new OneDep session and access all your OneDep depositions. <a style="color: #4a86e8;" href="https://www.wwpdb.org/news/news?year=2023#657a2266d78e004e766a96cb" target="_blank">More information</a>.</p> <p>Please select the location of the institute of your Principal Investigator (PI) for OneDep deposition.<br /> This will automatically direct to the closest wwPDB data center for faster response times for communication and computation.</p> <table> <tr> <td>Country/Region:  </td> <td> <select id="location1" name="location"> <option>Select...</option> <option >United Kingdom</option> <option >United States</option> <option >Japan</option> <option >Afghanistan</option> <option >Aland Islands</option> <option >Albania</option> <option >Algeria</option> <option >American Samoa</option> <option >Andorra</option> <option >Angola</option> <option >Anguilla</option> <option >Antarctica</option> <option >Antigua And Barbuda</option> <option >Argentina</option> <option >Armenia</option> <option >Aruba</option> <option >Australia</option> <option >Austria</option> <option >Azerbaijan</option> <option >Bahamas</option> <option >Bahrain</option> <option >Bangladesh</option> <option >Barbados</option> <option >Belarus</option> <option >Belgium</option> <option >Belize</option> <option >Benin</option> <option >Bermuda</option> <option >Bhutan</option> <option >Bolivia, Plurinational State Of</option> <option >Bonaire, Sint Eustatius And Saba</option> <option >Bosnia And Herzegovina</option> <option >Botswana</option> <option >Bouvet Island</option> <option >Brazil</option> <option >British Indian Ocean Territory</option> <option >Brunei Darussalam</option> <option >Bulgaria</option> <option >Burkina Faso</option> <option >Burundi</option> <option >Cambodia</option> <option >Cameroon</option> <option >Canada</option> <option >Cape Verde</option> <option >Cayman Islands</option> <option >Central African Republic</option> <option >Chad</option> <option >Chile</option> <option >China</option> <option >Christmas Island</option> <option >Cocos (Keeling) Islands</option> <option >Colombia</option> <option >Comoros</option> <option >Congo</option> <option >Congo, The Democratic Republic Of The</option> <option >Cook Islands</option> <option >Costa Rica</option> <option >Cote D'Ivoire</option> <option >Croatia</option> <option >Cuba</option> <option >Curacao</option> <option >Cyprus</option> <option >Czech Republic</option> <option >Denmark</option> <option >Djibouti</option> <option >Dominica</option> <option >Dominican Republic</option> <option >Ecuador</option> <option >Egypt</option> <option >El Salvador</option> <option >Equatorial Guinea</option> <option >Eritrea</option> <option >Estonia</option> <option >Ethiopia</option> <option >Falkland Islands (Malvinas)</option> <option >Faroe Islands</option> <option >Fiji</option> <option >Finland</option> <option >France</option> <option >French Guiana</option> <option >French Polynesia</option> <option >French Southern Territories</option> <option >Gabon</option> <option >Gambia</option> <option >Georgia</option> <option >Germany</option> <option >Ghana</option> <option >Gibraltar</option> <option >Greece</option> <option >Greenland</option> <option >Grenada</option> <option >Guadeloupe</option> <option >Guam</option> <option >Guatemala</option> <option >Guernsey</option> <option >Guinea</option> <option >Guinea-Bissau</option> <option >Guyana</option> <option >Haiti</option> <option >Heard Island And Mcdonald Islands</option> <option >Holy See (Vatican City State)</option> <option >Honduras</option> <option >Hong Kong</option> <option >Hungary</option> <option >Iceland</option> <option >India</option> <option >Indonesia</option> <option >Iran, Islamic Republic Of</option> <option >Iraq</option> <option >Ireland</option> <option >Isle Of Man</option> <option >Israel</option> <option >Italy</option> <option >Jamaica</option> <option >Japan</option> <option >Jersey</option> <option >Jordan</option> <option >Kazakhstan</option> <option >Kenya</option> <option >Kiribati</option> <option >Korea, Democratic People'S Republic Of</option> <option >Korea, Republic Of</option> <option >Kuwait</option> <option >Kyrgyzstan</option> <option >Lao People'S Democratic Republic</option> <option >Latvia</option> <option >Lebanon</option> <option >Lesotho</option> <option >Liberia</option> <option >Libya</option> <option >Liechtenstein</option> <option >Lithuania</option> <option >Luxembourg</option> <option >Macao</option> <option >Macedonia</option> <option >Madagascar</option> <option >Malawi</option> <option >Malaysia</option> <option >Maldives</option> <option >Mali</option> <option >Malta</option> <option >Marshall Islands</option> <option >Martinique</option> <option >Mauritania</option> <option >Mauritius</option> <option >Mayotte</option> <option >Mexico</option> <option >Micronesia, Federated States Of</option> <option >Moldova, Republic Of</option> <option >Monaco</option> <option >Mongolia</option> <option >Montenegro</option> <option >Montserrat</option> <option >Morocco</option> <option >Mozambique</option> <option >Myanmar</option> <option >Namibia</option> <option >Nauru</option> <option >Nepal</option> <option >Netherlands</option> <option >New Caledonia</option> <option >New Zealand</option> <option >Nicaragua</option> <option >Niger</option> <option >Nigeria</option> <option >Niue</option> <option >Norfolk Island</option> <option >Northern Mariana Islands</option> <option >Norway</option> <option >Oman</option> <option >Pakistan</option> <option >Palau</option> <option >Palestinian Territory</option> <option >Panama</option> <option >Papua New Guinea</option> <option >Paraguay</option> <option >Peru</option> <option >Philippines</option> <option >Pitcairn</option> <option >Poland</option> <option >Portugal</option> <option >Puerto Rico</option> <option >Qatar</option> <option >Reunion</option> <option >Romania</option> <option >Russian Federation</option> <option >Rwanda</option> <option >Saint Barthelemy</option> <option >Saint Helena, Ascension And Tristan Da Cunha</option> <option >Saint Kitts And Nevis</option> <option >Saint Lucia</option> <option >Saint Martin (French Part)</option> <option >Saint Pierre And Miquelon</option> <option >Saint Vincent And The Grenadines</option> <option >Samoa</option> <option >San Marino</option> <option >Sao Tome And Principe</option> <option >Saudi Arabia</option> <option >Senegal</option> <option >Serbia</option> <option >Seychelles</option> <option >Sierra Leone</option> <option >Singapore</option> <option >Sint Maarten (Dutch Part)</option> <option >Slovakia</option> <option >Slovenia</option> <option >Solomon Islands</option> <option >Somalia</option> <option >South Africa</option> <option >South Georgia And The South Sandwich Islands</option> <option >South Sudan</option> <option >Spain</option> <option >Sri Lanka</option> <option >Sudan</option> <option >Suriname</option> <option >Svalbard And Jan Mayen</option> <option >Swaziland</option> <option >Sweden</option> <option >Switzerland</option> <option >Syrian Arab Republic</option> <option >Taiwan</option> <option >Tajikistan</option> <option >Tanzania, United Republic Of</option> <option >Thailand</option> <option >Timor-Leste</option> <option >Togo</option> <option >Tokelau</option> <option >Tonga</option> <option >Trinidad And Tobago</option> <option >Tunisia</option> <option >Turkey</option> <option >Turkmenistan</option> <option >Turks And Caicos Islands</option> <option >Tuvalu</option> <option >Uganda</option> <option >Ukraine</option> <option >United Arab Emirates</option> <option >United Kingdom</option> <option >United States</option> <option >United States Minor Outlying Islands</option> <option >Uruguay</option> <option >Uzbekistan</option> <option >Vanuatu</option> <option >Venezuela, Bolivarian Republic Of</option> <option >Viet Nam</option> <option >Virgin Islands, British</option> <option >Virgin Islands, U.S.</option> <option >Wallis And Futuna</option> <option >Western Sahara</option> <option >Yemen</option> <option >Zambia</option> <option >Zimbabwe</option> </select> </td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <span class="ui-icon ui-icon-info" data-qtip-left="Please select the location of your institute. This will be used to select a suitable wwPDB site for handling this deposition."></span> </li> </ul> </td>  </tr> </table> <hr> <br /> <p style="color: #4a86e8; font-size:medium;font-weight:normal;">If one or more experimental method(s) or integrative methods used to determine your structure is not a OneDep accepted method(s), but is accepted at PDB-Dev (see <a href="https://pdb-dev.wwpdb.org/about.html">PDB-Dev policies</a>), proceed with PDB-Dev deposition at <a href="https://pdb-dev.wwpdb.org/deposit.html" target="_blank">https://pdb-dev.wwpdb.org/deposit.html</a>. More information can be found on the <a href="https://www.wwpdb.org/documentation/ihm" target="_blank">wwPDB</a> and <a href="https://pdb-dev.wwpdb.org/faq.html" target="_blank">PDB-Dev</a> websites. </p>  <p id="redirect" style="display: none;">------------</p>  </div>  <div id="new_dep_form">  <p style="color: red;">On initiation of a deposition session the wwPDB OneDep system will provide the Corresponding Author with a deposition session password. Responsibility for managing the access information to each deposition session, and hence the privacy of this information, rests with the Principal Investigator(s).</p> <br /> <form autocomplete="off" name='start' method='post' action='/deposition/new'><input type="hidden" name="csrfmiddlewaretoken" value="NTSKnxfPcRomyakg7jLHEtZ7xewA5R8kz7SSUqFu1hcclFy9OS71O7irtd8Izydk"> <table> <tr> <td>Your e-mail address</td> <td><input id='emailField' autocomplete="true" name='email' value='' type='text' /></td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <span class="ui-icon ui-icon-info" data-qtip-left="Please enter your e-mail address. This will be used to send your login details."></span> </li> </ul> </td> <td> <div id="emailerror" class="form_error" style="display: none;"> <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> Invalid e-mail address</p></div></div> </div> </td> </tr> <tr id="passwordRow"> <td>Password (optional, or we will provide one) <br /><span style="font-size:10px;">This is a shared "group password"<br />(6 to 16 alphanumeric characters)</span></td> <td><input autocomplete="false" name='password' value='' type='password' /></td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <span class="ui-icon ui-icon-info" data-qtip-left="Please provide a password of more than 5 and less than 17 letters and numbers. If you don't provide a password then a random password will be generated for you."></span> </li> </ul> </td> <td> <div id="password1error" class="form_error" style="display: none;"> <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> A password should be between 6 and 16 alphanumeric characters</p></div></div> </div> <div id="password2error" class="form_error" style="display: none;"> <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> A password should only contain alphanumeric characters (letters and numbers)</p></div></div> </div> </td> </tr> <tr> <td>Country/Region</td> <td> <select id="location2" name="location"> <option>Select...</option> <option >United Kingdom</option> <option >United States</option> <option >Japan</option> <option >Afghanistan</option> <option >Aland Islands</option> <option >Albania</option> <option >Algeria</option> <option >American Samoa</option> <option >Andorra</option> <option >Angola</option> <option >Anguilla</option> <option >Antarctica</option> <option >Antigua And Barbuda</option> <option >Argentina</option> <option >Armenia</option> <option >Aruba</option> <option >Australia</option> <option >Austria</option> <option >Azerbaijan</option> <option >Bahamas</option> <option >Bahrain</option> <option >Bangladesh</option> <option >Barbados</option> <option >Belarus</option> <option >Belgium</option> <option >Belize</option> <option >Benin</option> <option >Bermuda</option> <option >Bhutan</option> <option >Bolivia, Plurinational State Of</option> <option >Bonaire, Sint Eustatius And Saba</option> <option >Bosnia And Herzegovina</option> <option >Botswana</option> <option >Bouvet Island</option> <option >Brazil</option> <option >British Indian Ocean Territory</option> <option >Brunei Darussalam</option> <option >Bulgaria</option> <option >Burkina Faso</option> <option >Burundi</option> <option >Cambodia</option> <option >Cameroon</option> <option >Canada</option> <option >Cape Verde</option> <option >Cayman Islands</option> <option >Central African Republic</option> <option >Chad</option> <option >Chile</option> <option >China</option> <option >Christmas Island</option> <option >Cocos (Keeling) Islands</option> <option >Colombia</option> <option >Comoros</option> <option >Congo</option> <option >Congo, The Democratic Republic Of The</option> <option >Cook Islands</option> <option >Costa Rica</option> <option >Cote D'Ivoire</option> <option >Croatia</option> <option >Cuba</option> <option >Curacao</option> <option >Cyprus</option> <option >Czech Republic</option> <option >Denmark</option> <option >Djibouti</option> <option >Dominica</option> <option >Dominican Republic</option> <option >Ecuador</option> <option >Egypt</option> <option >El Salvador</option> <option >Equatorial Guinea</option> <option >Eritrea</option> <option >Estonia</option> <option >Ethiopia</option> <option >Falkland Islands (Malvinas)</option> <option >Faroe Islands</option> <option >Fiji</option> <option >Finland</option> <option >France</option> <option >French Guiana</option> <option >French Polynesia</option> <option >French Southern Territories</option> <option >Gabon</option> <option >Gambia</option> <option >Georgia</option> <option >Germany</option> <option >Ghana</option> <option >Gibraltar</option> <option >Greece</option> <option >Greenland</option> <option >Grenada</option> <option >Guadeloupe</option> <option >Guam</option> <option >Guatemala</option> <option >Guernsey</option> <option >Guinea</option> <option >Guinea-Bissau</option> <option >Guyana</option> <option >Haiti</option> <option >Heard Island And Mcdonald Islands</option> <option >Holy See (Vatican City State)</option> <option >Honduras</option> <option >Hong Kong</option> <option >Hungary</option> <option >Iceland</option> <option >India</option> <option >Indonesia</option> <option >Iran, Islamic Republic Of</option> <option >Iraq</option> <option >Ireland</option> <option >Isle Of Man</option> <option >Israel</option> <option >Italy</option> <option >Jamaica</option> <option >Japan</option> <option >Jersey</option> <option >Jordan</option> <option >Kazakhstan</option> <option >Kenya</option> <option >Kiribati</option> <option >Korea, Democratic People'S Republic Of</option> <option >Korea, Republic Of</option> <option >Kuwait</option> <option >Kyrgyzstan</option> <option >Lao People'S Democratic Republic</option> <option >Latvia</option> <option >Lebanon</option> <option >Lesotho</option> <option >Liberia</option> <option >Libya</option> <option >Liechtenstein</option> <option >Lithuania</option> <option >Luxembourg</option> <option >Macao</option> <option >Macedonia</option> <option >Madagascar</option> <option >Malawi</option> <option >Malaysia</option> <option >Maldives</option> <option >Mali</option> <option >Malta</option> <option >Marshall Islands</option> <option >Martinique</option> <option >Mauritania</option> <option >Mauritius</option> <option >Mayotte</option> <option >Mexico</option> <option >Micronesia, Federated States Of</option> <option >Moldova, Republic Of</option> <option >Monaco</option> <option >Mongolia</option> <option >Montenegro</option> <option >Montserrat</option> <option >Morocco</option> <option >Mozambique</option> <option >Myanmar</option> <option >Namibia</option> <option >Nauru</option> <option >Nepal</option> <option >Netherlands</option> <option >New Caledonia</option> <option >New Zealand</option> <option >Nicaragua</option> <option >Niger</option> <option >Nigeria</option> <option >Niue</option> <option >Norfolk Island</option> <option >Northern Mariana Islands</option> <option >Norway</option> <option >Oman</option> <option >Pakistan</option> <option >Palau</option> <option >Palestinian Territory</option> <option >Panama</option> <option >Papua New Guinea</option> <option >Paraguay</option> <option >Peru</option> <option >Philippines</option> <option >Pitcairn</option> <option >Poland</option> <option >Portugal</option> <option >Puerto Rico</option> <option >Qatar</option> <option >Reunion</option> <option >Romania</option> <option >Russian Federation</option> <option >Rwanda</option> <option >Saint Barthelemy</option> <option >Saint Helena, Ascension And Tristan Da Cunha</option> <option >Saint Kitts And Nevis</option> <option >Saint Lucia</option> <option >Saint Martin (French Part)</option> <option >Saint Pierre And Miquelon</option> <option >Saint Vincent And The Grenadines</option> <option >Samoa</option> <option >San Marino</option> <option >Sao Tome And Principe</option> <option >Saudi Arabia</option> <option >Senegal</option> <option >Serbia</option> <option >Seychelles</option> <option >Sierra Leone</option> <option >Singapore</option> <option >Sint Maarten (Dutch Part)</option> <option >Slovakia</option> <option >Slovenia</option> <option >Solomon Islands</option> <option >Somalia</option> <option >South Africa</option> <option >South Georgia And The South Sandwich Islands</option> <option >South Sudan</option> <option >Spain</option> <option >Sri Lanka</option> <option >Sudan</option> <option >Suriname</option> <option >Svalbard And Jan Mayen</option> <option >Swaziland</option> <option >Sweden</option> <option >Switzerland</option> <option >Syrian Arab Republic</option> <option >Taiwan</option> <option >Tajikistan</option> <option >Tanzania, United Republic Of</option> <option >Thailand</option> <option >Timor-Leste</option> <option >Togo</option> <option >Tokelau</option> <option >Tonga</option> <option >Trinidad And Tobago</option> <option >Tunisia</option> <option >Turkey</option> <option >Turkmenistan</option> <option >Turks And Caicos Islands</option> <option >Tuvalu</option> <option >Uganda</option> <option >Ukraine</option> <option >United Arab Emirates</option> <option >United Kingdom</option> <option >United States</option> <option >United States Minor Outlying Islands</option> <option >Uruguay</option> <option >Uzbekistan</option> <option >Vanuatu</option> <option >Venezuela, Bolivarian Republic Of</option> <option >Viet Nam</option> <option >Virgin Islands, British</option> <option >Virgin Islands, U.S.</option> <option >Wallis And Futuna</option> <option >Western Sahara</option> <option >Yemen</option> <option >Zambia</option> <option >Zimbabwe</option> </select> </td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <button type="button" onclick="restart_dep();">Reset</button> </li> </ul> </td>  </tr> <tr> <td>Experimental method</td> <td></td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <span class="ui-icon ui-icon-info" data-qtip-left="Please select all relevant experiment types which relate to this deposition."></span> </li> </ul> </td> <td> <div id="dataerror" class="form_error" style="display: none;"> <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> Select at least one experiment method or submethod</p></div></div> </div> </td> </tr> <tr>  <td colspan=4>    <input class='wwpdb_checkbox expmethod' name='XRAY' type='checkbox' />X-Ray Diffraction</td> </tr> <tr>  <td colspan=4>    <input class='wwpdb_checkbox expmethod' name='EM' type='checkbox' />Electron Microscopy</td> </tr> <tr>  <td colspan=4>    <input class='wwpdb_checkbox expmethod' name='NMR' type='checkbox' />Solution NMR</td> </tr> <tr>  <td colspan=4>    <input class='wwpdb_checkbox expmethod' name='ND' type='checkbox' />Neutron Diffraction</td> </tr> <tr>  <td colspan=4>    <input class='wwpdb_checkbox expmethod' name='EC' type='checkbox' />Electron Crystallography</td> </tr> <tr>  <td colspan=4>    <input class='wwpdb_checkbox expmethod' name='SSNMR' type='checkbox' />Solid-state NMR</td> </tr> <tr>  <td colspan=4>    <input class='wwpdb_checkbox expmethod' name='FD' type='checkbox' />Fiber Diffraction</td> </tr> <tr id="emmapdep" style="display: none;"> <td style="padding-left: 3em;">Has the associated map been deposited previously?<br /> <input type="radio" name="emmapdep" value="N" onclick="noRelated('EMDB');" /><label>No</label><br /> <input type="radio" name="emmapdep" value="Y" onclick="getRelated('EMDB');" /><label>Yes</label><br /> </td> </tr> <tr id="ecmapdep" style="display: none;"> <td style="padding-left: 3em;">Has the associated map been deposited previously?<br /> <input type="radio" name="emmapdep" value="N" onclick="noRelated('EMDB');" /><label>No. I would like to deposit a map as part of this submission.</label><br /> <input type="radio" name="emmapdep" value="Nsf" onclick="noRelated('noEMDB');" /><label>No, but I would like to deposit structure factors only.</label><br /> <input type="radio" name="emmapdep" value="Y" onclick="getRelated('EMDB');" /><label>Yes</label><br /> </td> </tr> <tr id="EMDBrelated" style="display: none;"> <td style="padding-left: 3em;">Related EMDB deposition:</td> <td> <input name='related_emdb' value='' type='text' /> e.g. EMD-1234</td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <span class="ui-icon ui-icon-info" data-qtip-left="Please enter your EMDB id code for the associated map you deposited previously."></span> </li> </ul> </td> <td> <div id="relatedemdberror" class="form_error" style="display: none;"> <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> Invalid EMDB code</p></div></div> </div> </td> </tr> <tr id="composite_question"> <td id="" style="padding-left: 3em; padding-top: 1em;">Is this a composite map deposition?<br /> <input type="radio" name="composite_question" value="No" onclick="compositeAnswered()" /><label>No</label><br /> <input type="radio" name="composite_question" value="Composite map" onclick="compositeAnswered()" /><label>Yes</label><br /><br /> </td> <td> <div id="composite_question_error" class="form_error" style="display: none;"> <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> Please select whether the map is a composite map.</p></div></div> </div> </td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <span class="ui-icon ui-icon-info" data-qtip-left="A composite map, also known as a chimeric map, is one which has been artificially constructed from multiple focused refinements (each of which should be deposited as a related deposition for validation purposes). It should also have a low resolution consensus map deposited as an associated EMDB entry which supports the overall structure. More details on this can be found in <a href='https://www.ebi.ac.uk/emdb/documentation/policies#1-3'> section 1.3 of EMDB Policies</a>. "> </span> </li> </ul> </td> </tr> <tr id="composite_question_explanation"> <td style="color:red"> <p><a href='https://www.ebi.ac.uk/emdb/documentation/deposition/composite_map' style="color:red">Composite map deposition guide (Click here!)</a></p> <p>A composite map, also known as a chimeric map, is one which has been artificially constructed from multiple focused refinements (each of which should be deposited as a related deposition for validation purposes). It should also have a low resolution consensus map deposited as an associated EMDB entry which supports the overall structure. More details on this can be found in <a href='https://www.ebi.ac.uk/emdb/documentation/policies#1-3'> section 1.3 of EMDB Policies</a>.</p> </td> </tr> <tr id="nmrdatadep" style="display: none;"> <td style="padding-left: 3em;">Has the associated NMR experimental data been deposited previously?<br /> <input type="radio" name="nmrdatadep" value="N" onclick="noRelated('BMRB');" /><label>No</label><br /> <input type="radio" name="nmrdatadep" value="Y" onclick="getRelated('BMRB');" /><label>Yes</label><br /> </td> </tr> <tr id="BMRBrelated" style="display: none;"> <td style="padding-left: 3em;">Related BMRB deposition:</td> <td> <input name='related_bmrb' value='' type='text' /> e.g. 12345</td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <span class="ui-icon ui-icon-info" data-qtip-left="If you have already deposited NMR data (chemical shifts) for this deposition at BMRB, please provide the BMRB id code."></span> </li> </ul> </td> <td> <div id="relatedbmrberror" class="form_error" style="display: none;"> <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> BMRB code should be an integer containing no more than 5 digits</p></div></div> </div> </td> </tr> <tr> <td style="padding-left: 1.5em; padding-top: 1em; color: grey;">Requested accession codes <td></td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <span class="ui-icon ui-icon-info" data-qtip-left="You opted to receive these selected accession codes."></span> </li> </ul> </td> <td> <div id="ids1error" class="form_error" style="display: none;"> <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> At least one accession code must be selected</p></div></div> </div> <div id="ids2error" class="form_error" style="display: none;"> <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> Only a BMRB code was requested. Please deposit at <a href='https://deposit.bmrb.io/'>BMRB</a> if you do not wish to deposit any coordinates. Otherwise request an additional PDB code.</p></div></div> </div> </td> </tr> <tr> <td style="padding-left: 1.5em; color: grey;"> <label style="white-space: nowrap; display: inline-block;"><input class='wwpdb_checkbox expcode' name='PDB' type='checkbox' disabled="disabled" />PDB    </label> <label style="white-space: nowrap; display: inline-block;"><input class='wwpdb_checkbox expcode' name='EMDB' type='checkbox' disabled="disabled" />EMDB    </label> <label style="white-space: nowrap; display: inline-block;"><input class='wwpdb_checkbox expcode' name='BMRB' type='checkbox' disabled="disabled" />BMRB    </label> </td> </tr>  <tr> <td> <label for="captcha_input">Please copy this code:<span id="txt_captcha_span" style="color:#F00; margin-left: 5px;"></span> <input type="hidden" name="captcha_check" id="captcha_check" /> </label> </td> <td><input type="text" name="captcha_input" id="captcha_input" required /></td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <span class="ui-icon ui-icon-info" data-qtip-left="Please copy the red text code into the input box, this is to prevent robots creating multiple session ID within the deposition system."></span> </li> </ul> </td> <td> <div id="captcha_error" class="form_error" style="display: none;"> <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> The check field does not match the red number</p></div></div> </div> </td> </tr> <tr> <td>Privacy policy</td> <td> </td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <span class="ui-icon ui-icon-info" data-qtip-left="Please read our privacy policy and indicate that you have accepted it."></span> </li> </ul> </td> <td> <div id="privacyerror" class="form_error" style="display: none;"> <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> wwPDB cannot create a deposition, unless you accept the privacy notice. Please tick the box to indicate your acceptance of the wwPDB privacy notice</p></div></div> </div> </td> </tr> <tr> <td colspan=4>    <input name="privacy" type='checkbox' /> Tick to indicate that you have read and accepted the wwPDB policy on personal data privacy, including what data wwPDB collects, how the data is stored and shared. <a href="//www.wwpdb.org/about/privacy" target="_blank">www.wwpdb.org/about/privacy</a></td> </tr> </table> <div class='div1'> <div class='div2'> </div> <div class='div3'> <input id="sub_button" type=button onClick='javascript:sub();' value='Start deposition' /> <input style="display: none;" id="sub_button_bmrb" type=button onClick='javascript:window.location="https://deposit.bmrb.io";' value='Deposit NMR data at BMRB' /> </div> </div> </form> </div>  </div>  </div> </div> <div id="pane-north" class="ui-layout-north"> <div style="float:left;"> <img alt="OneDep logo" src="/deposition/static//images/onedep_logo.png" style="height: 45px;" /> </div> <div style="float:right;"> <table> <tr> <td><a href="//www.wwpdb.org/deposition/faq" id="faqbutton" target="_blank">FAQ</a></td> <td><a href="//www.wwpdb.org/deposition/tutorial" id="tutorialbutton" target="_blank">Tutorials</a></td> <td style="padding-left: 2em;"><a href="//www.wwpdb.org" target="_blank"><img src="/deposition/static//images/wwpdb_logo.png" alt="wwPDB logo" style="height: 35px;" /></a></td> </tr> </table> </div> <div style="float:left; margin: 0 0 0 36px;"> <h1 style="font-size:300%; margin: 0px;">wwPDB OneDep System</h1> </div> </DIV> <div id="pane-south" class="ui-layout-south"> <div style="font-size: x-small;"> Version: 0.53.1 </div> </div> <div id="pane-east" class="ui-layout-east"></div> <div id="pane-west" class="ui-layout-west" style="padding-top: 10px;"> <div class="ui-corner-all"> <h3 class="ui-widget-header ui-corner-all panel-header-fix">Existing OneDep deposition</h3> <div style="padding: 1em 1em;"> <div> <form name='login' method='post' action='/deposition/pageview/'><input type="hidden" name="csrfmiddlewaretoken" value="NTSKnxfPcRomyakg7jLHEtZ7xewA5R8kz7SSUqFu1hcclFy9OS71O7irtd8Izydk"> <table style=" width: 100%;"> <tr> <td colspan=2>Deposition ID</td> </tr> <tr> <td> <input id='loginDepID' name='depID' type='text' /> </td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <span class="ui-icon ui-icon-info" data-qtip-left="Please provide your deposition ID for an existing deposition. This should be of the format 'D_##########' where # is 0-9."></span> </li> </ul> </td> </tr> <tr><td colspan=2></td></tr> <tr> <td colspan=2>Password</td> </tr> <tr> <td> <input id="loginToken" name='token' type='password' /> </td> <td> <ul class="icons ui-widget ui-helper-clearfix"> <li class="ui-state-default ui-corner-all"> <span class="ui-icon ui-icon-info" data-qtip-left="Please provide the password that was sent to you when starting a new deposition."></span> </li> </ul> </td> </tr> </table> <div class='div1'> <div class='div2'> </div> <div class='div3'> <input id="loginMe" type='submit' value='Log in' /> </div> </div> </form> <div class='div1'> <div class='div2'> </div> <div class='div3'> <input type='submit' id="ForgotPW" value='Forgot Password' onclick="showPasswordDialog();" /><br /><br /> </div> </div> <div class='div1'> <div class='div2'>  <div id="orcidWidget" data-size="sm" class="small"><a id="orcidAuthButton" href="/deposition/auth/oauth/login"><img src="/deposition/static//images/orcid_24x24.png">Sign in with ORCID</a></div> </div> </div> </div> </div> <h3 class="ui-widget-header ui-corner-all panel-header-fix">Validation server</h3> <div style="padding: 1em 1em;"> <p>Have you checked your data at the stand-alone validation server?<br /><a href="//validate.wwpdb.org">validate.wwpdb.org</a></p> </div> <h3 class="ui-widget-header ui-corner-all panel-header-fix">wwPDB regions</h3> <div style="padding: 1em 1em;"> <div id="regions" style="width: auto; height: auto;"></div> </div>  </div> </div> <div id="passwordDialog" title="Retrieve forgotten password"> <form name='forgotPassword'> <table> <tr> <td>Deposition ID:</td> <td><input id='forgotDepID' name='depID' type='text' /></td> </tr> <tr> <td>Email address:</td> <td><input id='forgotEmail' name='tokencheck' type='text' /></td> </tr> </table> </form> <p id="passwordFeedback">Error message</p> </div> <div id="api-key-dialog" title="Deposition API Key" style="word-break: break-all;"> Your API key is shown below. Please copy it as it won't be shown again. <br /><br /> <code id="api-key" style="display: inline-block; max-width: 800px;"></code> </div> </body> </html>

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