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ESO - EsoReflex
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Newsletter</a></li><li class="std2"><a href="/sci/publications/enews.html">Archive of the ESO Enews</a></li></ul></li><li class="std1"><a href="/sci/publications/messenger/">The Messenger</a></li><li class="std1"><a href="/public/products/annualreports/">ESO Annual Reports</a></li></ul></li><li class="std0"><a href="/sci/vacancies.html">Job Opportunities</a></li></ul> <!-- leftnav --> </li > <!--/1--> </ul> <!-- leftmenu --> </div> <!-- smenu --> </div> <!-- col1_content --> </div> <!-- col1 --> <a id="content" name="content"></a> <div id="col3"> <div id="col3_content" class="clearfix"> <h1>What is EsoReflex?</h1> EsoReflex is an environment that provides an easy and flexible way to reduce VLT/VLTI science data using the ESO pipelines. Its top-level functionalities are: <ul><li>EsoReflex allows to graphically specify the sequence in which the data reduction steps are executed, including conditional stops, loops and conditional branches.</li> <li>EsoReflex makes it easy to inspect the intermediate and final data products and to repeat selected processing steps to optimize the data reduction.</li> <li>The data organization necessary to reduce the data is built into the system and is fully automatic.</li> <li>Advanced users can plug-in their own modules and steps into the data reduction sequence. A tutorial with instructions and examples is available <a href=https://www.eso.org/sci/data-processing/faq/how-do-i-customize-the-data-reduction-chain-of-a-esoreflex-workflow.html>here</a>.</li> <li>EsoReflex supports the development of data reduction workflows based on the <a href=../cpl>ESO Common Pipeline Library</a>.</li> </ul> <p>EsoReflex is based on the concept of a scientific workflow, whereby the data reduction cascade is rendered graphically and data seamlessly flow from one processing step to the next. It is distributed with a number of complete test datasets so that users can immediately start experimenting and familiarize themselves with the system.</p> <p>For further information, please, refer to the latest <a href="https://ftp.eso.org/pub/dfs/reflex/EsoReflexUserManual-3.9.pdf">EsoReflex User Manual</a>.</p> <p>EsoReflex is based on the open source <a href="https://kepler-project.org/">workflow engine Kepler</a>.</p> If you make use of EsoReflex or EsoReflex workflows in a scientific publication, please consider citing EsoReflex. You may reference the following paper: <A href="../pipelines/documents/reflex_aa.pdf">Automated Data Reduction Workflows for Astronomy: The ESO Reflex Environment</A>, 2013, Freudling, W., et al., Astron.Astrophys., <b>559</b>, A96 (<a href="../pipelines/documents/reflex_aa.bib">Bibtex entry</a>) <h2>EsoReflex Latest Public Version</h2> The latest public version of EsoReflex is <strong>2.11.5</strong> <h2>Officially Supported Pipelines</h2> EsoReflex can be used with any CPL-based pipeline. Some pipelines provide EsoReflex-based workflows in their public releases. Please refer to <a href=../pipelines/index.html#reflex_workflows>this table</a> for information about supported modes, tutorials, example data sets and user manuals. <h2>EsoReflex System Requirements</h2> EsoReflex is written in Java and is known to work in the following systems: <ul> <b><li>Fedora 28 to 32</b></li> <b><li>CentOS 7</b></li> <b><li>Scientific Linux 7</b></li> <b><li>Ubuntu 16.04 18.04 18.10 19.04 20.04</b></li> <b><li>Debian 9</b></li> <b><li>macOS 10.14, 10.15 and 11</b></li> </ul> Any recent Linux distribution should be compatible with EsoReflex out of the box.</br> <p>Additionally, some EsoReflex-based workflows might have extra software requirements (most notably python modules). Check <a href=../pipelines/installation/software_prerequisites.html#software_prerequisites_reflex>EsoReflex-based workflows software prerequisites</a> for more information. <h2>Installing and running EsoReflex</h2> <p></p> <h3>Prerequisites</h3> EsoReflex 2.11.5 requires Java: the recommended version is 11, but 8 is also supported</br> NOTE: on macOS you can install the OpenJDK from <a href="https://adoptium.net/?variant=openjdk11">here</a></br> Workflows may have other requirements, please refer to the workflow tutorial and to the pipeline user manual. There are two installation option: the automatic and the manual one. <h3>Package managers for Fedora and macOS (recommended)</h3> <p>For Fedora it is strongly recommended to install it with our rpm repository. This repository includes both EsoReflex and the pipelines. Refer to the instructions provided <a href="../pipelines/installation/rpm.html">here</a>.</p> <p>For Apple macOS, it is strongly recommended to install it with MacPorts. This repository includes both EsoReflex and the pipelines. Refer to the instructions provided <a href="../pipelines/installation/macports.html">here</a>.</p> <h3>Automatic Installation with installation script</h3> A script is provided that takes care of all the required steps to install and run EsoReflex: <ul> <li>It downloads and installs a pipeline kit, that contains the workflows associated to the pipeline.</li> <li>It downloads and installs some test data.</li> <li>It donwloads and installs EsoReflex.</li> <li>It configures EsoReflex to point to the installed pipeline.</li> </ul> If you want to use this method, check the software requirements in the <a href=../pipelines/index.html#reflex_workflows>release information of this table</a>, download the <a href="https://www.eso.org/sci/software/pipelines/install_esoreflex">script</a> and follow the instructions. <h3>Manual method</h3> If you don't want to use the automatic method (e.g. because you want to use a specific version of the pipeline), you can manually download and install EsoReflex following these steps: <ul> <li>Install the pipeline kit you are interested in. Only the recipes present in the output of <pre>esorex --recipes</pre> will be available to EsoReflex.</li> <li>Download the latest stable version for <a href="https://ftp.eso.org/pub/dfs/reflex/esoreflex-2.11.5.tar.gz">Linux and macOS</a> <li>Uncompress the package using gzip and tar.</li> <li>Execute the reflex command in the bin directory under the distribution directory.</li> </ul> <h3>Installing Python dependencies for EsoReflex using conda</h3> If you need to install the Python dependencies required to run EsoReflex and the pipeline workflows locally yourself, you can do this using a <a href="https://docs.conda.io/en/latest">conda</a> environment.<br> A detailed, step-by-step guide on how to setup a conda environment for EsoReflex can be found <a href="https://www.eso.org/sci/data-processing/faq/how-do-i-install-python-dependencies-for-esoreflex-using-conda.html">here</a> <H2><A name=Manual>EsoReflex User Manual</A></H2> <H3>Current Issue: 3.9</H3> The <a href="https://ftp.eso.org/pub/dfs/reflex/EsoReflexUserManual-3.9.pdf">EsoReflex User Manual</a> is available for download in PDF format. <H2><A name=DevelopmentGuide>Reflex Workflow Development Guide</A></H2> <H3>Current Issue: 1.0</H3> The <a href="https://ftp.eso.org/pub/dfs/reflex/reflex_dev_guide-1.0.pdf">EsoReflex Workflow Development Guide</a> is available for download in PDF format. <H2>Bug Reports</H2> If you experience an unexpected behavior of EsoReflex, please, first refer to the troubleshooting section in the User Manual. For any other issues or requests, please, send a report to the <A href="mailto:usd-help@eso.org?subject=EsoReflex%20Bug%20Report">ESO User Support Department</A>, describing: <ul> <li>the EsoReflex release you are using</li> <li>the pipeline release you are using</li> <li>the version of your OS</li> <li>the exact sequence of actions you performed before the bug occurred</li> <li>what were precisely the symptoms and the possible error message(s)</li> <li>whether the bug is repeatable </li> </ul> </div> <!-- col3 content --> <!-- IE Column Clearing --> <div id="ie_clearing"> </div> </div> <!-- #col3: - Ende --> </div> <!-- #main: - Ende --> <!-- #Footer: Beginn Fuzeile --> <div id="footer"> <!-- nur anzeigen wenn gewuenscht... --> <div id="footerupdate"> <table><tr><th>Last Update: 17.04.23 © ESO </th> <td> <script type="text/javascript">document.write('Send comments to ');</script><script type="text/javascript"> createEsoM('cpl-help', 'cpl-help');</script><NOSCRIPT><a href="/public/contactform.html?area=science">Send us your comments!</a></NOSCRIPT> | <a href="/sci/enews/">Subscribe to Newsletter</a> | <a href="/sci/privacy/index.html">Privacy Statement</a></td> </tr></table> </div> </div> <!-- #Footer: Ende --> </div> <!-- outer Wrapper --> </div> <!-- page --> </div> <!-- page_margins --> <!-- Matomo --> <script type="text/javascript"> var _paq = _paq || []; /* tracker methods like "setCustomDimension" should be called before "trackPageView" */ _paq.push(['trackPageView']); _paq.push(['enableLinkTracking']); (function() { var u="/mtmo/"; _paq.push(['setTrackerUrl', u+'piwik.php']); _paq.push(['setSiteId', '1']); var d=document, g=d.createElement('script'), s=d.getElementsByTagName('script')[0]; g.type='text/javascript'; g.async=true; g.defer=true; g.src=u+'piwik.js'; s.parentNode.insertBefore(g,s); })(); </script> <!-- End Matomo Code --> </body> </html>