Bioconductor - Dashboard

<!DOCTYPE html> <html xmlns="http://www.w3.org/1999/xhtml" dir="ltr" lang="en-US" prefix="og: http://ogp.me/ns#">  <head> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <meta http-equiv="Content-Language" content="en-us" /> <meta name="robots" content="all" /> <meta name="viewport" content="width=device-width, initial-scale=1" /> <meta name="description" content="The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists." /> <title>Bioconductor - Dashboard</title> <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/highlight.js/11.7.0/styles/default.min.css"> <link rel="stylesheet" href="/style/existing.css" />  <link rel="stylesheet" type="text/css" href="/style/base/fonts.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/base/colors.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/base/typography.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/base/layout.css" media="screen" />  <link rel="stylesheet" type="text/css" href="/style/components/code.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/components/gallery.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/components/blockquote.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/components/lists.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/components/breadcrumbs.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/components/buttons.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/components/tables.css" media="screen" />  <link rel="stylesheet" type="text/css" href="/style/sections/announcement.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/sections/hero.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/sections/header.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/sections/sidebar.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/sections/footer.css" media="screen"/>  <link rel="stylesheet" type="text/css" href="/style/pages/home.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/pages/get-started.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/pages/learn-and-dev.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/pages/about.css" media="screen" /> <link rel="stylesheet" type="text/css" href="/style/pages/packages.css" media="screen"/> <link rel="SHORTCUT ICON" type="image/x-icon" href="/favicon.ico" /> <link rel="ICON" type="image/x-icon" href="/favicon.ico" /> </head> <body>  <script async src="https://www.googletagmanager.com/gtag/js?id=G-WJMEEH1J58"></script> <script> window.dataLayer = window.dataLayer || []; function gtag() { dataLayer.push(arguments); } gtag("js", new Date()); gtag("config", "G-WJMEEH1J58"); </script> <script type="text/javascript" src="/js/jquery.js"></script> <script src="/js/jquery.tools.min.js"></script> <script type="text/javascript" src="/js/bioconductor.js"></script> <script type="text/javascript" src="/js/jquery.corner.js"></script> <script type="text/javascript" src="/js/jquery.timeago.js"></script> <script type="text/javascript" src="/js/bioc-style.js"></script> <script type="text/javascript" src="/js/versions.js"></script> <script type="text/javascript" src="/js/code_blocks.js"></script> <script type="text/javascript" src="/js/sidebar.js"></script> <script src="//cdnjs.cloudflare.com/ajax/libs/highlight.js/11.7.0/highlight.min.js"></script> <header id="site-masthead" class="site-masthead"> <div class="announcement announcement-brand"> </div>  <div class="header-size"> <div class="header-logo"> <a href="/"> <img src="/images/logo/svg/Logo.svg" class="masthead-logo" alt="Bioconductor home" /> </a> </div> <nav class="header-nav"> <div class="nav-links"> <a class="format-bold mobile-link" href="/about/">About</a> <a class="format-bold mobile-link" href="/help/">Learn</a> <a class="format-bold mobile-link" href="/packages/release/BiocViews.html#___Software">Packages</a> <a class="format-bold mobile-link" href="/developers/">Developers</a> </div> <div class="search-container"> <form class="site-search" id="search-form" method="GET" action="/help/search/index.html" > <label for="search-bar" class="sr-only">Search</label> <img src="/images/icons/search-icon.svg" class="search-icon" alt="Search icon" aria-hidden="true" /> <input class="search-bar" name="search-bar" placeholder="Search" id="search-bar" /> </form> </div> <a class="header-button format-bold mobile-link" href="/install/"> <span class="get-started format-bold"> Get Started <svg xmlns="http://www.w3.org/2000/svg" width="14" height="15" viewBox="0 0 14 15" fill="none" > <path d="M5.25 3.66665L9.33333 7.74998L5.25 11.8333" stroke="#3792AD" stroke-width="2.2" stroke-linecap="round" stroke-linejoin="round" /> </svg> </span> </a> </nav> <div class="nav-mobile"> <h6>Menu</h6> <div class="hamburger"> <span class="bar"></span> <span class="bar"></span> <span class="bar"></span> </div> </div> </div> </header> <main> <div class="container"> <section class="content"> <ul class="breadcrumbs"> <li><a href="/">Home</a></li> <li>Dashboard</li> </ul> <style type="text/css"> SPAN.TIMEOUT { background: #A08; font-weight: bold; color: white; } SPAN.ERROR { background: #B33; font-weight: bold; color: white; } SPAN.WARNINGS { background: #D82; font-weight: bold; color: white; } SPAN.OK { background: #282; font-weight: bold; color: #DDD; } </style> <h1 class="format-bold">Dashboard</h1> <a id="top"></a> <div> <p>This page was built <abbr class="timeago" title="2025-02-25T23:05:08Z"> 2025-02-25T23:05:08Z</abbr>.</p> </div> <div> <h3 class="format-bold">Quick Links</h3> <ol> <li><a href="#build_system_status">Build System Status</a></li> <li><a href="#recent_commits">Recent Commits To Git</a></li> <li><a href="#newest_packages">Newly Accepted Packages</a></li> <li><a href="#spb">Single Package Builder Activity</a></li> <li><a href="#recent_support_site">Support Site Activity</a></li> <li><a href="#mirror_status">Mirror Status</a></li> <li><a href="https://dev.status.bioconductor.org/">Other Infrastructure Status</a></li> </ol> </div> <div class="page-container"> <a id="build_system_status"></a> <section> <h2><a href="/checkResults/">Build System Status</a></h2> <p>Legend: <span class="TIMEOUT"> TIMEOUT </span> <span class="ERROR"> ERROR </span> <span class="WARNINGS"> WARNINGS </span> <span class="OK"> OK </span> </p> <p><br></p> </section> <section> <h4>Release</h4> <p><a class="text-large format-bold" href="/checkResults/release/bioc-LATEST/">Software</a></p> <iframe src="/dashboard/build_release_bioc.html" width="80%", height=200></iframe> <p> </p> <p><a class="text-large format-bold" href="/checkResults/release/data-experiment-LATEST/">Experiment Data</a></p> <iframe src="/dashboard/build_release_data-experiment.html" width="80%", height=200></iframe> <p> </p> <p><a class="text-large format-bold" href="/checkResults/release/workflows-LATEST/">Workflows</a></p> <iframe src="/dashboard/build_release_workflows.html" width="80%", height=200></iframe> <p> </p> </section> <section> <h4>Devel</h4> <p><a class="text-large format-bold" href="/checkResults/devel/bioc-LATEST/">Software</a></p> <iframe src="/dashboard/build_devel_bioc.html" width="80%", height=200></iframe> <p> </p> <p><a class="text-large format-bold" href="/checkResults/devel/data-experiment-LATEST/">Experiment Data</a></p> <iframe src="/dashboard/build_devel_data-experiment.html" width="80%", height=200></iframe> <p> </p> <p><a class="text-large format-bold" href="/checkResults/devel/workflows-LATEST/">Workflows</a></p> <iframe src="/dashboard/build_devel_workflows.html" width="80%", height=200></iframe> <p> </p> </section> <a id="recent_commits"></a> <a href="#top" style="font-size: small; float: right; text-align: right">Back to top</a> <hr class="page-divider" /> <section> <h2>Recent Commits</h2> <div style="float:left;width:50%;"> <p>Last 10 commit to Bioconductor <b>release</b>: <table> <tr><td><a href=https://bioconductor.org/packages/COTAN/>COTAN</a></td><td>2025-02-25 15:30:05 +0100</td></tr><tr><td><a href=https://bioconductor.org/packages/immApex/>immApex</a></td><td>2025-02-25 08:19:26 -0600</td></tr><tr><td><a href=https://bioconductor.org/packages/AHMassBank/>AHMassBank</a></td><td>2025-02-25 11:54:11 +0100</td></tr><tr><td><a href=https://bioconductor.org/packages/ORFik/>ORFik</a></td><td>2025-02-25 09:26:52 +0100</td></tr><tr><td><a href=https://bioconductor.org/packages/smoothclust/>smoothclust</a></td><td>2025-02-24 14:36:03 -0500</td></tr><tr><td><a href=https://bioconductor.org/packages/AnVIL/>AnVIL</a></td><td>2025-02-24 12:40:43 -0500</td></tr><tr><td><a href=https://bioconductor.org/packages/SeqArray/>SeqArray</a></td><td>2025-02-22 01:58:47 -0600</td></tr><tr><td><a href=https://bioconductor.org/packages/missMethyl/>missMethyl</a></td><td>2025-02-21 16:50:15 +1100</td></tr><tr><td><a href=https://bioconductor.org/packages/fenr/>fenr</a></td><td>2025-02-20 11:32:52 +0000</td></tr><tr><td><a href=https://bioconductor.org/packages/structToolbox/>structToolbox</a></td><td>2025-02-19 11:14:32 +0000</td></tr></table> </p> </div> <div style="float:right;width:50%;"> <p>Last 10 commit to Bioconductor <b>devel</b>: <table> <tr><td><a href=https://bioconductor.org/packages/devel/OmnipathR/>OmnipathR</a></td><td>2025-02-25 22:08:54 +0100</td></tr><tr><td><a href=https://bioconductor.org/packages/devel/CRISPRseek/>CRISPRseek</a></td><td>2025-02-25 13:55:48 -0500</td></tr><tr><td><a href=https://bioconductor.org/packages/devel/RBioinf/>RBioinf</a></td><td>2025-02-25 13:55:33 -0500</td></tr><tr><td><a href=https://bioconductor.org/packages/devel/rmspc/>rmspc</a></td><td>2025-02-25 13:05:35 -0500</td></tr><tr><td><a href=https://bioconductor.org/packages/devel/LEA/>LEA</a></td><td>2025-02-25 18:51:12 +0100</td></tr><tr><td><a href=https://bioconductor.org/packages/devel/Rgraphviz/>Rgraphviz</a></td><td>2025-02-25 11:47:36 -0500</td></tr><tr><td><a href=https://bioconductor.org/packages/devel/COTAN/>COTAN</a></td><td>2025-02-25 16:16:04 +0100</td></tr><tr><td><a href=https://bioconductor.org/packages/devel/SynExtend/>SynExtend</a></td><td>2025-02-25 10:03:33 -0500</td></tr><tr><td><a href=https://bioconductor.org/packages/devel/immApex/>immApex</a></td><td>2025-02-25 08:20:40 -0600</td></tr><tr><td><a href=https://bioconductor.org/packages/devel/AHMassBank/>AHMassBank</a></td><td>2025-02-25 11:55:06 +0100</td></tr></table> </p> </div> </section> <a id="newest_packages"></a> <a href="#top" style="font-size: small; float: right; text-align: right">Back to top</a> <hr class="page-divider" /> <section> <h2>Newest Packages</h2> <div style="float:left;width:50%;"> <h6>Software Packages</h6> <p> <table> <tr><td><a href= https://bioconductor.org/packages/CARDspa/ > CARDspa </a></td><td> Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics </td></tr> <tr><td><a href= https://bioconductor.org/packages/HiCParser/ > HiCParser </a></td><td> Parser for HiC data in R </td></tr> <tr><td><a href= https://bioconductor.org/packages/MSstatsBioNet/ > MSstatsBioNet </a></td><td> Network Analysis for MS-based Proteomics Experiments </td></tr> <tr><td><a href= https://bioconductor.org/packages/bedbaser/ > bedbaser </a></td><td> A BEDbase client </td></tr> <tr><td><a href= https://bioconductor.org/packages/XeniumIO/ > XeniumIO </a></td><td> Import and represent Xenium data from the 10X Xenium Analyzer </td></tr> <tr><td><a href= https://bioconductor.org/packages/ELViS/ > ELViS </a></td><td> An R Package for Estimating Copy Number Levels of Viral Genome Segments Using Base-Resolution Read Depth Profile </td></tr> <tr><td><a href= https://bioconductor.org/packages/dandelionR/ > dandelionR </a></td><td> Single-cell Immune Repertoire Trajectory Analysis in R </td></tr> <tr><td><a href= https://bioconductor.org/packages/chevreulShiny/ > chevreulShiny </a></td><td> Tools for managing SingleCellExperiment objects as projects </td></tr> <tr><td><a href= https://bioconductor.org/packages/chevreulProcess/ > chevreulProcess </a></td><td> Tools for managing SingleCellExperiment objects as projects </td></tr> <tr><td><a href= https://bioconductor.org/packages/chevreulPlot/ > chevreulPlot </a></td><td> Plots used in the chevreulPlot package </td></tr> </table> </p> </div> <div style="float:right;width:50%;"> <h6>Experiment Data Packages</h6> <p> <table> <tr><td><a href= https://bioconductor.org/packages/humanHippocampus2024/ > humanHippocampus2024 </a></td><td> Access to SRT and snRNA-seq data from spatial_HPC project </td></tr> <tr><td><a href= https://bioconductor.org/packages/eoPredData/ > eoPredData </a></td><td> ExperimentHub package containing model data for predicting preeclampsia status for based on plcaental DNA methylation profile </td></tr> <tr><td><a href= https://bioconductor.org/packages/ProteinGymR/ > ProteinGymR </a></td><td> Programmatic access to ProteinGym datasets in R/Bioconductor </td></tr> <tr><td><a href= https://bioconductor.org/packages/CoSIAdata/ > CoSIAdata </a></td><td> VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee </td></tr> <tr><td><a href= https://bioconductor.org/packages/LegATo/ > LegATo </a></td><td> LegATo: Longitudinal mEtaGenomic Analysis Toolkit </td></tr> <tr><td><a href= https://bioconductor.org/packages/EpipwR.data/ > EpipwR.data </a></td><td> EpipwR.data: Reference data for EpipwR </td></tr> <tr><td><a href= https://bioconductor.org/packages/bugphyzz/ > bugphyzz </a></td><td> A harmonized data resource and software for enrichment analysis of microbial physiologies </td></tr> <tr><td><a href= https://bioconductor.org/packages/homosapienDEE2CellScore/ > homosapienDEE2CellScore </a></td><td> Example Data Package for CellScore </td></tr> <tr><td><a href= https://bioconductor.org/packages/JohnsonKinaseData/ > JohnsonKinaseData </a></td><td> Kinase PWMs based on data published by Johnson et al. 2023 and Yaron-Barir et al. 2024 </td></tr> <tr><td><a href= https://bioconductor.org/packages/CytoMethIC/ > CytoMethIC </a></td><td> DNA methylation-based machine learning models </td></tr> </table> </p> </div> </section> <a id="spb"></a> <a href="#top" style="font-size: small; float: right; text-align: right">Back to top</a> <hr class="page-divider" /> <section> <h2>Single Package Builder</h2> <a href="https://github.com/Bioconductor/Contributions/issues">All Current Submissions</a> <p></p> <div style="float:left;width:50%;"> Recent Submissions <br> <table> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3750>DropSift</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3749>Ibex</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3748>LipidTrend</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3747>barbieQ</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3741>spacexr</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3738>TRADEtools</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3735>methylTracer</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3734>SigFun</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3732>pathMED</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3731>OSTA.data</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3730>decemedip</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3729>Coralysis</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3725>Rlibigraph</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3720>stPipe</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3716>LongMod123</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3715>DNAcycP2</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3712>HVP</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3711>dmGsea</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3709>placentaImmuneCellRefEPIC450k</a></td></tr> <tr><td><a href=https://github.com/Bioconductor/Contributions/issues/3705>scLANE</a></td></tr> </table> </div> <div style="float:right;width:50%;"> Recent Builds <table> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21665">DeconvoBuddies</a></td> <td><abbr class="timeago" title="2025-02-25T20:02:28">2025-02-25T20:02:28</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21664">DNEA</a></td> <td><abbr class="timeago" title="2025-02-25T15:23:34">2025-02-25T15:23:34</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21663">OSTA.data</a></td> <td><abbr class="timeago" title="2025-02-25T13:31:06">2025-02-25T13:31:06</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21662">SVP</a></td> <td><abbr class="timeago" title="2025-02-25T11:50:27">2025-02-25T11:50:27</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21661">limpa</a></td> <td><abbr class="timeago" title="2025-02-25T07:38:39">2025-02-25T07:38:39</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21660">SigFun</a></td> <td><abbr class="timeago" title="2025-02-25T05:49:06">2025-02-25T05:49:06</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21659">SigFun</a></td> <td><abbr class="timeago" title="2025-02-25T05:39:55">2025-02-25T05:39:55</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21658">SigFun</a></td> <td><abbr class="timeago" title="2025-02-25T05:27:29">2025-02-25T05:27:29</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21657">decemedip</a></td> <td><abbr class="timeago" title="2025-02-25T05:11:30">2025-02-25T05:11:30</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21656">SigFun</a></td> <td><abbr class="timeago" title="2025-02-25T05:03:52">2025-02-25T05:03:52</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21655">SigFun</a></td> <td><abbr class="timeago" title="2025-02-25T04:53:28">2025-02-25T04:53:28</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21654">SigFun</a></td> <td><abbr class="timeago" title="2025-02-25T04:38:19">2025-02-25T04:38:19</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21653">decemedip</a></td> <td><abbr class="timeago" title="2025-02-25T04:35:32">2025-02-25T04:35:32</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21652">SigFun</a></td> <td><abbr class="timeago" title="2025-02-25T03:38:30">2025-02-25T03:38:30</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21651">SigFun</a></td> <td><abbr class="timeago" title="2025-02-25T03:19:48">2025-02-25T03:19:48</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21650">SigFun</a></td> <td><abbr class="timeago" title="2025-02-25T02:58:56">2025-02-25T02:58:56</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21649">SigFun</a></td> <td><abbr class="timeago" title="2025-02-25T01:52:03">2025-02-25T01:52:03</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21648">SigFun</a></td> <td><abbr class="timeago" title="2025-02-25T01:21:53">2025-02-25T01:21:53</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21646">Rlibigraph</a></td> <td><abbr class="timeago" title="2025-02-24T19:04:29">2025-02-24T19:04:29</abbr></td> </tr> <tr> <td><a href="http://staging.bioconductor.org:8000/job/21645">SmartPhos</a></td> <td><abbr class="timeago" title="2025-02-24T19:04:12">2025-02-24T19:04:12</abbr></td> </tr> </table> </div> </section> <a id="recent_support_site"></a> <a href="#top" style="font-size: small; float: right; text-align: right">Back to top</a> <hr class="page-divider" /> <div style="float:left;width:50%;"> <div style="padding:0 12px 0 0"> <h2 style="min-height:40px;"> <img height="36" width="37" src="/images/icons/help.gif" alt=""/> <a href="https://support.bioconductor.org/">Support</a> </h2> <ul> <li>Read the <a href="/help/support/posting-guide/">posting guide</a></li> <li><a href="/help/support/#bioc-devel">bioc-devel mailing list (for package authors)</a></li> </ul> <div class="grey_box"> <a href="https://support.bioconductor.org/p/9161351/#9161353" title="Answer: How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differenti"> <b>Answer: How to adjust for Cell Type D...</b></a><br/> <abbr class="timeago" title="2025-02-25T19:02:39Z"> 2025-02-25T19:02:39Z</abbr> </div> <div class="white_box"> <a href="https://support.bioconductor.org/p/9161216/#9161352" title="Comment: displaying the differential expression with deseq2 over 4X2 samples with the in"> <b>Comment: displaying the differential ...</b></a><br/> <abbr class="timeago" title="2025-02-25T18:49:21Z"> 2025-02-25T18:49:21Z</abbr> </div> <div class="grey_box"> <a href="https://support.bioconductor.org/p/9161351/" title="How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differential Gene Expression analysis in scRNA-seq?"> <b>How to adjust for Cell Type Differenc...</b></a><br/> <abbr class="timeago" title="2025-02-25T17:11:26Z"> 2025-02-25T17:11:26Z</abbr> </div> <div class="white_box"> <a href="https://support.bioconductor.org/p/9161338/#9161350" title="Comment: Plot title for PCA in DESeq2"> <b>Comment: Plot title for PCA in DESeq2</b></a><br/> <abbr class="timeago" title="2025-02-25T08:41:26Z"> 2025-02-25T08:41:26Z</abbr> </div> <div class="grey_box"> <a href="https://support.bioconductor.org/p/9161347/#9161349" title="Answer: Interpreting DESEQ2 interaction term and inclusion of covariate"> <b>Answer: Interpreting DESEQ2 interact...</b></a><br/> <abbr class="timeago" title="2025-02-24T21:56:25Z"> 2025-02-24T21:56:25Z</abbr> </div> <br/> </div> </div> <a id="mirror_status"></a> <a href="#top" style="font-size: small; float: right; text-align: right">Back to top</a> <hr class="page-divider" /> <h2>Mirror Status</h2> <p>Last updated <abbr class="timeago" title="2025-02-25T17:05:36-05:00"> 2025-02-25T17:05:36-05:00</abbr>. (Will be updated every 24 hours).</p> To use a Bioconductor mirror use the R function `chooseBioCmirror()` <table> <tr> <th>URL</th> <th>Mirror</th> <th>Release</th> <th>Devel</th> </tr> <tr> <td><a href="https://bioconductor.org/">https://bioconductor.org/</a></td> <td>yes</td> <td>yes</td> <td>yes</td> </tr> <tr> <td><a href="https://bioconductor.posit.co/">https://bioconductor.posit.co/</a></td> <td>yes</td> <td>yes</td> <td>yes</td> </tr> <tr> <td><a href="https://bioconductor.statistik.tu-dortmund.de/">https://bioconductor.statistik.tu-dortmund.de/</a></td> <td>yes</td> <td>yes</td> <td>yes</td> </tr> <tr> <td><a href="https://ftp.gwdg.de/pub/misc/bioconductor/">https://ftp.gwdg.de/pub/misc/bioconductor/</a></td> <td>yes</td> <td>yes</td> <td>yes</td> </tr> <tr> <td><a href="https://bioconductor.riken.jp/">https://bioconductor.riken.jp/</a></td> <td>yes</td> <td>yes</td> <td>yes</td> </tr> <tr> <td><a href="https://free.nchc.org.tw/bioconductor/">https://free.nchc.org.tw/bioconductor/</a></td> <td>yes</td> <td>no</td> <td>no</td> </tr> <tr> <td><a href="https://mirrors.tuna.tsinghua.edu.cn/bioconductor/">https://mirrors.tuna.tsinghua.edu.cn/bioconductor/</a></td> <td>yes</td> <td>yes</td> <td>yes</td> </tr> <tr> <td><a href="https://mirrors.nju.edu.cn/bioconductor/">https://mirrors.nju.edu.cn/bioconductor/</a></td> <td>yes</td> <td>yes</td> <td>yes</td> </tr> <tr> <td><a href="https://mirrors.ustc.edu.cn/bioc/">https://mirrors.ustc.edu.cn/bioc/</a></td> <td>yes</td> <td>no</td> <td>no</td> </tr> <tr> <td><a href="https://mirrors.westlake.edu.cn/bioconductor">https://mirrors.westlake.edu.cn/bioconductor</a></td> <td>no</td> <td>yes</td> <td>no</td> </tr> <tr> <td><a href="https://mirrors.zju.edu.cn/bioconductor">https://mirrors.zju.edu.cn/bioconductor</a></td> <td>no</td> <td>yes</td> <td>yes</td> </tr> <tr> <td><a href="https://bioconductor.uib.no/">https://bioconductor.uib.no/</a></td> <td>yes</td> <td>yes</td> <td>yes</td> </tr> <tr> <td><a href="https://bioconductor.unipi.it">https://bioconductor.unipi.it</a></td> <td>no</td> <td>no</td> <td>no</td> </tr> <tr> <td><a href="https://cran.asia">https://cran.asia</a></td> <td>no</td> <td>yes</td> <td>yes</td> </tr> <tr> <td><a href="https://mirror.aarnet.edu.au/pub/bioconductor">https://mirror.aarnet.edu.au/pub/bioconductor</a></td> <td>no</td> <td>no</td> <td>no</td> </tr> <tr> <td><a href="https://mirrors.dotsrc.org/bioconductor/">https://mirrors.dotsrc.org/bioconductor/</a></td> <td>yes</td> <td>yes</td> <td>yes</td> </tr> <tr> <td><a href="https://mirror.accum.se/mirror/bioconductor.org/">https://mirror.accum.se/mirror/bioconductor.org/</a></td> <td>yes</td> <td>yes</td> <td>yes</td> </tr> </table> <a href="#top" style="font-size: small; float: right; text-align: right">Back to top</a> </div> </section> </div> </main> <footer> <div class="footer-container"> <div class="link-container"> <div class="link-container-inner"> <nav> <a href="/about/index.html"><h3>About</h3></a> <a href="/about/annual-reports/">Annual Reports</a> <a href="/about/collaborations/">Collaborations</a> <a href="/about/core-team/">Core Team</a> <a href="/about/mirrors/">Mirrors</a> <a href="/dashboard/">Dashboard</a> <a href="/about/">Project Details</a> <a href="/about/code-of-conduct/">Code of Conduct</a> </nav> <nav> <a href="/developers/index.html"><h3>Developers</h3></a> <a href="https://contributions.bioconductor.org/develop-overview.html">Package Guidelines</a> <a href="https://contributions.bioconductor.org/submission-overview.html">Package Submission</a> <a href="/developers/release-schedule/">Release Schedule</a> <a href="/about/release-announcements/">Release Announcements</a> <a href="https://contributions.bioconductor.org/git-version-control.html">Source Control</a> <a href="https://code.bioconductor.org/">Browsable Code Base</a> <a href="/checkResults/">Build Reports</a> </nav> </div> <div class="link-container-inner"> <nav> <a href="/help/index.html"><h3>Learn</h3></a> <a href="https://training.bioconductor.org/">Education and Training</a> <a href="/help/bioconductor-books/">Bioconductor Books</a> <a href="/help/package-vignettes/">Package Vignettes</a> <a href="/packages/release/workflows/">Workflows</a> <a href="/help/publications/">Publications</a> <a href="/help/community/">Community Resources</a> <a href="/help/support/">Get Help</a> </nav> <nav> <a href="/install/index.html"><h3>Get started</h3></a> <a href="/install/index.html#install-R">Install R</a> <a href="/install/index.html#find-bioconductor-packages">Find Bioconductor Packages</a> <a href="/install/index.html#install-bioconductor-packages">Install Bioconductor Packages</a> <a href="/install/index.html#update-bioconductor-packages">Update Bioconductor Packages</a> <a href="/help/docker/">Docker Images</a> <a href="https://anvil.bioconductor.org/">Bioconductor in AnVIL</a> <a href="/packages/release/BiocViews.html#___Software">Bioconductor Packages</a> </nav> </div> </div> <div class="logo-contact-container"> <div class="copyright"> <p> Contact us: <a class="text-underline" href="https://support.bioconductor.org/">support.bioconductor.org</a><br/> Copyright © 2003 - 2025 Bioconductor </p> </div> <div class="socials-logo-container"> <div class="socials"> <a href="https://slack.bioconductor.org/" target="_blank"><img alt="Slack Logo" src="/images/icons/slack.png" /></a> <a href="https://www.youtube.com/user/bioconductor" target="_blank"><img alt="YouTube Logo" src="/images/icons/svgs/youtube.svg" /></a> <a href="https://www.linkedin.com/company/bioconductor/" target="_blank"><img alt="LinkedIn Logo" src="/images/icons/svgs/linkedin.svg" /></a> <a href="https://bsky.app/profile/bioconductor.bsky.social" target="_blank"><img alt="Bluesky Logo" src="/images/icons/svgs/bluesky.svg" /></a> <a href="https://genomic.social/@bioconductor" target="_blank"><img alt="Mastodon Logo" src="/images/icons/svgs/mastodon.svg" /></a> <a href="https://blog.bioconductor.org/" target="_blank"><img alt="Blog Logo" src="/images/icons/svgs/arrow-circle-right-white.svg" /></a> </div> <img class="footer-logo" src="/images/logo/svg/BC-Logo-White.svg" alt="BioConductor Logo in White" /> </div> </div> </div> </footer> </body> </html>

CINXE.COM

Bioconductor - Dashboard