Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) - CityU Scholars

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rendering_researchoutput_compact rendering_researchoutput rendering_compact rendering_researchoutput_compact"><h1 class="title">Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)</h1></div><p class="type"><span class="type_family">Research output<span class="type_family_sep">: </span></span><span class="type_classification_parent">Journal Publications and Reviews<span class="type_parent_sep"> › </span></span><span class="type_classification">RGC 21 - Publication in refereed journal</span><span class="type_classification"><span class="type_parent_sep"> › </span>peer-review</span></p></div> <div class="tabs-container"> <ul class="clear"> <li class="selected"><a class="portal_link" href="https://scholars.cityu.edu.hk/en/publications/guidelines-for-the-use-and-interpretation-of-assays-for-monitoring-autophagy-4th-edition(48e4d60e-96b4-45ba-bfcb-9f5154e06269).html"><span>Overview</span></a> </li> </ul> </div> <div class="pub-full"> <div class="pub-top"> <div class="view-box scopus"> <span class="number">1566</span> <span>Scopus Citations</span> </div> <div class="view-box viewall-scopus"> <a target="_blank" class="view_all_scopus_button" href="https://www.scopus.com/record/pubmetrics.uri?eid=2-s2.0-85102619204&origin=recordpage"> Scopus Metrics </a> </div> <div class="view-box almetric"> <script type="text/javascript" src="//d1bxh8uas1mnw7.cloudfront.net/assets/embed.js"></script> <div class="altmetric-embed pure_altmetric_component" data-badge-type="2" data-badge-popover="left" data-hide-no-mentions="true" data-link-target="true" data-doi="10.1080/15548627.2020.1797280"></div> </div> <div class="graph_viewer"> <div class="graph"><a class="portal_graphviewer_button" href="javascript:void(0);" id="j_id-222676425_40f6ca2e"><span>View graph of relations</span></a> <script type="text/javascript"></script> <i class="icon-network"></i> </div> </div> <div class="addthis"> <div class="addthis_sharing_toolbox"></div> </div> </div> <div class="view-box"> <h2 class="subheader">Author(s)</h2><div class="rendering rendering_researchoutput rendering_researchoutput_associatesauthorsclassifiedsummarizedlistportal rendering_contributiontojournal rendering_associatesauthorsclassifiedsummarizedlistportal rendering_contributiontojournal_associatesauthorsclassifiedsummarizedlistportal"><ul class="relations persons groupauthors associates_authors_full_list"><li>632 authors, including</li><li>Jianbo Yue</li></ul></div> </div> <div class="view-box"> <h2 class="subheader">Related Research Unit(s)</h2><div class="rendering rendering_researchoutput rendering_researchoutput_associatesorganisationsportal rendering_contributiontojournal rendering_associatesorganisationsportal rendering_contributiontojournal_associatesorganisationsportal"><ul class="relations organisations"><li class="a"><a rel="Organisation" href="https://scholars.cityu.edu.hk/en/organisations/department-of-biomedical-sciences(7f082170-95c7-47b9-b02b-8eaecd285c60).html" class="link"><span>Department of Biomedical Sciences</span></a></li></ul></div> </div> <div class="view-box"> <h2 class="subheader">Detail(s)</h2><div class="rendering rendering_researchoutput rendering_researchoutput_detailsportal rendering_contributiontojournal rendering_detailsportal rendering_contributiontojournal_detailsportal"><div class="article"><table class="properties"><tbody><tr class="language"><th scope="row">Original language</th><td>English</td></tr><tr><th scope="row">Pages (from-to)</th><td>1-382</td></tr><tr><th scope="row">Journal / Publication</th><td><a rel="Journal" href="https://scholars.cityu.edu.hk/en/journals/autophagy(95977567-508e-4b30-9e3b-3027cb835dc3)/publications.html" class="link"><span>Autophagy</span></a></td></tr><tr><th scope="row">Volume</th><td>17</td></tr><tr><th scope="row">Issue number</th><td>1</td></tr><tr><th scope="row">Online published</th><td><span class="date">8 Feb 2021</span></td></tr><tr class="status"><th scope="row">Publication status</th><td><span class="prefix">Published - </span><span class="date">2021</span></td></tr></tbody></table></div></div> </div> <div class="view-box"> <h2 class="subheader">Link(s)</h2> <table class="properties pub-links"> <tr> <th>DOI</th> <td><div class="rendering rendering_researchoutput rendering_researchoutput_versioneddoiextensionportal rendering_contributiontojournal rendering_versioneddoiextensionportal rendering_contributiontojournal_versioneddoiextensionportal"><h2 class="subheader">DOI</h3><ul class="relations links digital_object_identifiers"><li class="embargo_date_ended available open "><a onclick="window.open(this.href, '_blank','noopener,noreferrer'); return false;" href="https://doi.org/10.1080/15548627.2020.1797280" class="link"><span>https://doi.org/10.1080/15548627.2020.1797280</span></a> <span class="common_icon_16" style="background-image: url('/resources/style/icons/type/openaccess16.png');"></span><p class="dimmed">Final Published version</p></li></ul></div> </td> </tr> <tr> <th></th> <td> <span class="sfx-button" title="Check@CityULib"> <a href="https://julac.hosted.exlibrisgroup.com/primo-explore/openurl?ctx_ver=Z39.88-2004&ctx_tim=2024-11-23T19%3A39%3A01HKT&ctx_enc=info%3Aofi%2FencUTF-8&url_ver=Z39.88-2004&url_ctx_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Actx&rft.genre=article&rft_val_fmt=info%3Aofi%2Fkev%3Afmt%3Ajournal&rfr_id=info%3Asid%2F%3Apure&rft.atitle=Guidelines%20for%20the%20use%20and%20interpretation%20of%20assays%20for%20monitoring%20autophagy%20%284th%20edition%29&rft_id=info%3Adoi%2F10.1080%2F15548627.2020.1797280&rft.date=2021&rft.volume=17&rft.issue=1&rft.issn=1554-8627&rft.jtitle=Autophagy&rft.pages=1-382&institution=CUH_ALMA&vid=CUH" target="_blank"> Check@CityULib </a> </span> </td> </tr> <tr> <th>Link to Scopus</th> <td><a target="_blank" class="scopus-link-pub" href="https://www.scopus.com/record/display.uri?eid=2-s2.0-85102619204&origin=recordpage"> https://www.scopus.com/record/display.uri?eid=2-s2.0-85102619204&origin=recordpage </a></td> </tr> <tr class="permanent_link"> <th>Permanent Link</th> <td> <a href="https://scholars.cityu.edu.hk/en/publications/publication(48e4d60e-96b4-45ba-bfcb-9f5154e06269).html">https://scholars.cityu.edu.hk/en/publications/publication(48e4d60e-96b4-45ba-bfcb-9f5154e06269).html</a></td> </tr> </table> </div> <div class="view-box"> <h2 class="subheader">Abstract</h2><div class="rendering rendering_researchoutput rendering_researchoutput_customabstractportal rendering_contributiontojournal rendering_customabstractportal rendering_contributiontojournal_customabstractportal"><div class="textblock">In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field.</div></div> </div> <div class="view-box"> <h2 class="subheader">Research Area(s)</h2><div class="rendering rendering_keywordable rendering_keywordgroupsexcludecopyright rendering_keywordable_keywordgroupsexcludecopyright"><div class="keywordcontainers"><ul class="relations keywords"><li>Autophagosome, cancer, flux, LC3, lysosome, macroautophagy, neurodegeneration, phagophore, stress, vacuole</li></ul></div><div class="sustainabledevelopmentgoals"><ul class="relations keywords"><li><strong><a href="https://scholars.cityu.edu.hk/en/publications/browse.html?uri=%2Fdk%2Fatira%2Fpure%2Fsustainabledevelopmentgoals%2Fgood_health_and_well_being&logicalname=sustainabledevelopmentgoals" class="link"><span>SDG 3 - Good Health and Well-being</span></a></strong></li></ul></div></div> </div> <div class="publication_related_concepts"> <div class="view_preview_panel"><script type="text/javascript" src="/resources/style/js/concept_tooltip.js?stamp=1731905518316"></script> <div class="relationlist for_publication_fingerprints"> <h2 class="section for_publication_fingerprints subheader"> Fingerprint </h2> <p class="portal_inline_help">Publication fingerprints text</p> <div class="concept_listing" data-content-id="73633137" data-locale="en_GB"> <div class="concept-badge-wrapper"><a class="portal_link concept" href="https://scholars.cityu.edu.hk/en/concepts/refinement.html?conceptIds=195950728" title="Assay in Agricultural and Biological Sciences has a weight of 100%"><span> <div class="canvas-wrap"> <canvas class="canvas" width="50" height="50" data-procent="100"></canvas> <span class="procent">100</span> </div> <div class="finger-info"> <span class="title"> <span class="text">Assay</span> </span> <span class="concept_badge less_100" data-content-id="195950728" data-thesauri-acronym="AgriBio"> <span class="rating rank_100"><em></em></span> <span class="domain"> <span 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<span class="title"> <span class="text">Selective Autophagy</span> </span> <span class="concept_badge less_40" data-content-id="215565080" data-thesauri-acronym="keyphrases"> <span class="rating rank_20"><em></em></span> <span class="domain"> <span class="text">Keyphrases</span> </span> </span> </div></span></a> </div> <div class="concept-badge-wrapper"><a class="portal_link concept" href="https://scholars.cityu.edu.hk/en/concepts/refinement.html?conceptIds=195873685" title="information in INIS has a weight of 20%"><span> <div class="canvas-wrap"> <canvas class="canvas" width="50" height="50" data-procent="20"></canvas> <span class="procent">20</span> </div> <div class="finger-info"> <span class="title"> <span class="text">information</span> </span> <span class="concept_badge less_40" data-content-id="195873685" data-thesauri-acronym="inis"> <span class="rating rank_20"><em></em></span> <span class="domain"> <span class="text">INIS</span> </span> </span> </div></span></a> </div> <div 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class="procent">20</span> </div> <div class="finger-info"> <span class="title"> <span class="text">knowledge base</span> </span> <span class="concept_badge less_40" data-content-id="195879013" data-thesauri-acronym="inis"> <span class="rating rank_20"><em></em></span> <span class="domain"> <span class="text">INIS</span> </span> </span> </div></span></a> </div> </div> <div class="concept_links"><a class="portal_link" href="https://scholars.cityu.edu.hk/en/publications/guidelines-for-the-use-and-interpretation-of-assays-for-monitoring-autophagy-4th-edition(48e4d60e-96b4-45ba-bfcb-9f5154e06269)/fingerprints.html"><span>Full Fingerprint ›</span></a> </div> </div> </div> </div> <div class="view-box citations"> <h2 class="subheader">Citation Format(s)</h2> <div class="tabs-container citations clear"> <ul class="citations"> <li class="selected"><a href="#">Standard</a></li> <li><a href="#">Harvard</a></li> <li><a href="#">APA</a></li> <li><a href="#">Vancouver</a></li> <li><a href="#">Author</a></li> </ul> <div class="cite-export"> <span class="publication_export">[ <a class="portal_link" href="https://scholars.cityu.edu.hk/en/publications/guidelines-for-the-use-and-interpretation-of-assays-for-monitoring-autophagy-4th-edition(48e4d60e-96b4-45ba-bfcb-9f5154e06269).ris?download=true"><span>RIS</span></a> ]</span> <span class="publication_export">[ <a class="portal_link" href="https://scholars.cityu.edu.hk/en/publications/guidelines-for-the-use-and-interpretation-of-assays-for-monitoring-autophagy-4th-edition(48e4d60e-96b4-45ba-bfcb-9f5154e06269).bibtex?download=true"><span>BibTeX</span></a> ]</span> </div> </div> <div class="citation-container"> <div class="view-box cite"><div class="rendering rendering_researchoutput rendering_researchoutput_standard rendering_contributiontojournal rendering_standard rendering_contributiontojournal_standard"><a rel="ContributionToJournal" href="https://scholars.cityu.edu.hk/en/publications/guidelines-for-the-use-and-interpretation-of-assays-for-monitoring-autophagy-4th-edition(48e4d60e-96b4-45ba-bfcb-9f5154e06269).html" class="link"><span><strong>Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition).</strong></span></a> / 632 authors, including; Yue, Jianbo. <br />In: <a rel="Journal" href="https://scholars.cityu.edu.hk/en/journals/autophagy(95977567-508e-4b30-9e3b-3027cb835dc3)/publications.html" class="link"><span>Autophagy</span></a>, Vol. 17, No. 1, 2021, p. 1-382.<p class="type"><span class="type_family">Research output<span class="type_family_sep">: </span></span><span class="type_classification_parent">Journal Publications and Reviews<span class="type_parent_sep"> › </span></span><span class="type_classification">RGC 21 - Publication in refereed journal</span><span class="type_classification"><span class="type_parent_sep"> › </span>peer-review</span></p></div> </div> <div class="view-box cite" style="display: none;"><div class="rendering rendering_researchoutput rendering_researchoutput_harvard rendering_contributiontojournal rendering_harvard rendering_contributiontojournal_harvard">632 authors, including & Yue, J 2021, '<a rel="ContributionToJournal" href="https://scholars.cityu.edu.hk/en/publications/guidelines-for-the-use-and-interpretation-of-assays-for-monitoring-autophagy-4th-edition(48e4d60e-96b4-45ba-bfcb-9f5154e06269).html" class="link harvard_title"><span>Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)</span></a>', <a rel="Journal" href="https://scholars.cityu.edu.hk/en/journals/autophagy(95977567-508e-4b30-9e3b-3027cb835dc3)/publications.html" class="link"><span><em>Autophagy</em></span></a>, vol. 17, no. 1, pp. 1-382. <a onclick="window.open(this.href, '_blank','noopener,noreferrer'); return false;" href="https://doi.org/10.1080/15548627.2020.1797280" class="link"><span>https://doi.org/10.1080/15548627.2020.1797280</span></a></div> </div> <div class="view-box cite" style="display: none;"><div class="rendering rendering_researchoutput rendering_researchoutput_apa rendering_contributiontojournal rendering_apa rendering_contributiontojournal_apa">632 authors, including, & Yue, J. (2021). <a rel="ContributionToJournal" href="https://scholars.cityu.edu.hk/en/publications/guidelines-for-the-use-and-interpretation-of-assays-for-monitoring-autophagy-4th-edition(48e4d60e-96b4-45ba-bfcb-9f5154e06269).html" class="link"><span>Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)</span></a>. <a rel="Journal" href="https://scholars.cityu.edu.hk/en/journals/autophagy(95977567-508e-4b30-9e3b-3027cb835dc3)/publications.html" class="link"><span><em>Autophagy</em></span></a>, <em>17</em>(1), 1-382. <a onclick="window.open(this.href, '_blank','noopener,noreferrer'); return false;" href="https://doi.org/10.1080/15548627.2020.1797280" class="link"><span>https://doi.org/10.1080/15548627.2020.1797280</span></a></div> </div> <div class="view-box cite" style="display: none;"><div class="rendering rendering_researchoutput rendering_researchoutput_vancouver rendering_contributiontojournal rendering_vancouver rendering_contributiontojournal_vancouver">632 authors, including, Yue J. <span class="title"><a rel="ContributionToJournal" href="https://scholars.cityu.edu.hk/en/publications/guidelines-for-the-use-and-interpretation-of-assays-for-monitoring-autophagy-4th-edition(48e4d60e-96b4-45ba-bfcb-9f5154e06269).html" class="link"><span>Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)</span></a></span>. <a rel="Journal" href="https://scholars.cityu.edu.hk/en/journals/autophagy(95977567-508e-4b30-9e3b-3027cb835dc3)/publications.html" class="link"><span>Autophagy</span></a>. 2021;17(1):1-382. Epub 2021 Feb 8. doi: 10.1080/15548627.2020.1797280</div> </div> <div class="view-box cite" style="display: none;"><div class="rendering rendering_researchoutput rendering_researchoutput_author rendering_contributiontojournal rendering_author rendering_contributiontojournal_author">632 authors, including ; Yue, Jianbo. / <a rel="ContributionToJournal" href="https://scholars.cityu.edu.hk/en/publications/guidelines-for-the-use-and-interpretation-of-assays-for-monitoring-autophagy-4th-edition(48e4d60e-96b4-45ba-bfcb-9f5154e06269).html" class="link"><span><strong>Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)</strong></span></a>. In: <a rel="Journal" href="https://scholars.cityu.edu.hk/en/journals/autophagy(95977567-508e-4b30-9e3b-3027cb835dc3)/publications.html" class="link"><span>Autophagy</span></a>. 2021 ; Vol. 17, No. 1. pp. 1-382.</div> </div> </div> </div> </div> </div> </div> <div class="footer"> <div class="wrapper"> <div class="cityu-scholar-footer-outbox"> <div class="cityu-scholar-footer-inbox"> <a href="https://www.cityu.edu.hk/cityu/privacy/index.htm" title="Footer Privacy Policy" target="_blank">Privacy Policy</a> | <a href="https://www.cityu.edu.hk/cityu/copyright/index.htm#copyright" title="Footer Copyright" target="_blank">Copyright</a> | <a href="https://www.cityu.edu.hk/cityu/disclaimer/index.htm#disclaimer" title="Footer Disclaimer" target="_blank">Disclaimer</a> | <a href="https://www.cityu.edu.hk/cityu/accessibility/" title="Footer Accessibility" target="_blank">Accessibility</a> | <a href="https://www.cityu.edu.hk/cityu/contactus/index.htm" title="Footer Contact Us" target="_blank">Contact Us</a><br /> © City University of Hong Kong. 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