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Bacterial and Viral Bioinformatics Resource Center | BV-BRC

<!DOCTYPE html> <html lang="en"> <head> <title>Bacterial and Viral Bioinformatics Resource Center | BV-BRC</title> <link rel='stylesheet' href="/js/3.46.3/p3/resources/p3.css" /> <link rel='stylesheet' href="/js/3.46.3/heatmap/dist/hotmap.css" /> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"/> <meta name="Keywords" content="BV-BRC, Bacterial and Viral Bioinformatics Resource Center"/> <meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="google-site-verification" content="TkjceNtwo7upCQl_gx8Zmhhp9tCmc08LitZGuvQ1Eb8" /> <link rel="manifest" href="/public/manifest.json"> <link rel="icon" sizes="16x16 32x32" href="/favicon.ico"> <link href="https://fonts.googleapis.com/css2?family=Roboto+Slab:wght@300;400&family=Roboto:wght@300;400;700&display=swap" rel="stylesheet"> </head> <body class="claro patric "> <div id="ApplicationContainer" data-dojo-type="dijit/layout/BorderContainer" class="layoutContainer" data-dojo-props="id:'ApplicationContainer',gutters:false,liveSplitters:false"> <div data-dojo-type="dijit/layout/ContentPane" class="HeaderBar" data-dojo-props="region:'top'"> <div id="bv-brc-header" role="heading" aria-level="1"> <div id="bv-brc-header-container"> <div class="nav-logo"> <a class="nav-logo-link" href="/"> <img class="bv-brc-logo" src="/patric/images/bv-brc/bv-brc-header-logo.png" alt="BV-BRC Logo" style="height: 28px;"/> <span><i style="color: #ffffff; font-size: 12px; padding-left: 2px;">3.46.3 </i></span> </a> </div> <div id="header-menu"> <div class="topMenuButton showOnLoad dijitHidden" data-dojo-type="dijit/form/DropDownButton"> <span>ORGANISMS</span> <div data-dojo-type="p3/widget/TooltipDialog"> <div style="vertical-align: top;width:225px;display:inline-block;margin-right: 5px;"> <div class="menuHeader">Bacterial Pathogens</div> <div class="menuItems"> <div> <span class="menuItem half"> <a class="" href="/view/Taxonomy/469#view_tab=overview" title="Acinetobacter overview">Acinetobacter</a> </span> <span class="menuItem half"> <a class="" title="Francisella overview" href="/view/Taxonomy/262#view_tab=overview">Francisella</a> </span> </div> <div> <span class="menuItem half"> <a class="" href="/view/Taxonomy/1386#view_tab=overview" title="Bacillus overview">Bacillus</a> </span> <span class="menuItem half"> <a class="" title="Helicobacter overview" href="/view/Taxonomy/209#view_tab=overview">Helicobacter</a> </span> </div> <div> <span class="menuItem half"> <a class="" href="/view/Taxonomy/773#view_tab=overview" title="Bartonella overview">Bartonella</a> </span> <span class="menuItem half"> <a class="" title="Listeria overview" href="/view/Taxonomy/1637#view_tab=overview">Listeria</a> </span> </div> <div> <span class="menuItem half"> <a class="" href="/view/Taxonomy/64895#view_tab=overview" title="Borreliella overview">Borreliella</a> </span> <span class="menuItem half"> <a class="" title="Mycobacterium overview" href="/view/Taxonomy/1763#view_tab=overview">Mycobacterium</a> </span> </div> <div> <span class="menuItem half"> <a class="" href="/view/Taxonomy/234#view_tab=overview" title="Brucella overview">Brucella</a> </span> <span class="menuItem half"> <a class="" title="Pseudomonas overview" href="/view/Taxonomy/286#view_tab=overview">Pseudomonas</a> </span> </div> <div> <span class="menuItem half"> <a class="" href="/view/Taxonomy/32008#view_tab=overview" title="Burkholderia overview">Burkholderia</a> </span> <span class="menuItem half"> <a class="" title="Rickettsia overview" href="/view/Taxonomy/780#view_tab=overview">Rickettsia</a> </span> </div> <div> <span class="menuItem half"> <a class="" href="/view/Taxonomy/194#view_tab=overview" title="Campylobacter overview">Campylobacter</a> </span> <span class="menuItem half"> <a class="" title="Salmonella overview" href="/view/Taxonomy/590#view_tab=overview">Salmonella</a> </span> </div> <div> <span class="menuItem half"> <a class="" href="/view/Taxonomy/810#view_tab=overview" title="Chlamydia overview">Chlamydia</a> </span> <span class="menuItem half"> <a class="" title="Shigella overview" href="/view/Taxonomy/620#view_tab=overview">Shigella</a> </span> </div> <div> <span class="menuItem half"> <a class="" href="/view/Taxonomy/1485#view_tab=overview" title="Clostridium overview">Clostridium</a> </span> <span class="menuItem half"> <a class="" title="Staphylococcus overview" href="/view/Taxonomy/1279#view_tab=overview">Staphylococcus</a> </span> </div> <div> <span class="menuItem half"> <a class="" href="/view/Taxonomy/776#view_tab=overview" title="Coxiella overview">Coxiella</a> </span> <span class="menuItem half"> <a class="" title="Streptococcus overview" href="/view/Taxonomy/1301#view_tab=overview">Streptococcus</a> </span> </div> <div> <span class="menuItem half"> <a class="" href="/view/Taxonomy/943#view_tab=overview" title="Ehrlichia overview">Ehrlichia</a> </span> <span class="menuItem half"> <a class="" title="Vibrio overview" href="/view/Taxonomy/662#view_tab=overview">Vibrio</a> </span> </div> <div> <span class="menuItem half"> <a class="" href="/view/Taxonomy/561#view_tab=overview" title="Escherichia overview">Escherichia</a> </span> <span class="menuItem half"> <a class="" title="Yersinia overview" href="/view/Taxonomy/629#view_tab=overview">Yersinia</a> </span> </div> <br> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Bacteria/2" title="Overview page for all Bacteria genomes">All Bacteria</a> </span> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/2157" title="Overview page for all Archea genomes">All Archaea</a> </span> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/10239" title="Overview page for all Viruses">All Viruses</a> </span> <span class="menuItem half"> <a class="navigationLink" href="/view/Host/?eq(taxon_lineage_ids,2759)#view_tab=genomes" title="Overview page for all Eukaryotic host genomes">Eukaryotic Hosts</a></span> </div> </div> </div> <div style="vertical-align: top;width:341px;display:inline-block;margin-right: 5px;"> <div class="menuHeader">Viral Families</div> <div class="menuItems"> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/10508#view_tab=overview" title="Adenoviridae overview">Adenoviridae</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Orthomyxoviridae overview" href="/view/Taxonomy/11308#view_tab=overview">Orthomyxoviridae</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/137992#view_tab=overview" title="Asfarviridae overview">Asfarviridae</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Paramyxoviridae overview" href="/view/Taxonomy/11158#view_tab=overview">Paramyxoviridae</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/1980410#view_tab=overview" title="Bunyavirales overview">Bunyavirales</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Parvoviridae overview" href="/view/Taxonomy/10780#view_tab=overview">Parvoviridae</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/11974#view_tab=overview" title="Caliciviridae overview">Caliciviridae</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Picornaviridae overview" href="/view/Taxonomy/12058#view_tab=overview">Picornaviridae</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/11118#view_tab=overview" title="Coronaviridae overview">Coronaviridae</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Pneumoviridae overview" href="/view/Taxonomy/11244#view_tab=overview">Pneumoviridae</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/11266#view_tab=overview" title="Filoviridae overview">Filoviridae</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Polyomaviridae overview" href="/view/Taxonomy/151341#view_tab=overview">Polyomaviridae</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/11050#view_tab=overview" title="Flaviviridae overview">Flaviviridae</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Poxviridae overview" href="/view/Taxonomy/10240#view_tab=overview">Poxviridae</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/10404#view_tab=overview" title="Hepadnaviridae overview">Hepadnaviridae</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Reovirales overview" href="/view/Taxonomy/2732541#view_tab=overview">Reovirales</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/291484#view_tab=overview" title="Hepeviridae overview">Hepeviridae</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Rhabdoviridae overview" href="/view/Taxonomy/11270#view_tab=overview">Rhabdoviridae</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/548681#view_tab=overview" title="Herpesvirales overview">Herpesvirales</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Togaviridae overview" href="/view/Taxonomy/11018#view_tab=overview">Togaviridae</a> </span> </div> </div> <div class="menuHeader">Featured Viruses</div> <div class="menuItems"> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/GenomeList/?eq(genome_name,phage)" title="Bacteriophages overview">Bacteriophages</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Influenza A virus overview" href="/view/Taxonomy/11320#view_tab=overview">Influenza A virus</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/12637#view_tab=overview" title="Dengue virus overview">Dengue virus</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Mammarenavirus lassaense overview" href="/view/Taxonomy/3052310#view_tab=overview">Mammarenavirus lassaense</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/186536#view_tab=overview" title="Ebolavirus overview">Ebolavirus</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Monkeypox virus overview" href="/view/Taxonomy/10244#view_tab=overview">Monkeypox virus</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/12059#view_tab=overview" title="Enterovirus overview">Enterovirus</a> </span> <span class="menuItem half"> <a class="navigationLink" title="SARS-CoV-2 overview" href="/view/Taxonomy/2697049#view_tab=overview">SARS-CoV-2</a> </span> </div> <div> <span class="menuItem half"> <a class="navigationLink" href="/view/Taxonomy/11102#view_tab=overview" title="Hepacivirus overview">Hepacivirus</a> </span> <span class="menuItem half"> <a class="navigationLink" title="Zika virus overview" href="/view/Taxonomy/64320#view_tab=overview">Zika virus</a> </span> </div> </div> </div> </div> </div> <div class="topMenuButton showOnLoad dijitHidden" data-dojo-type="dijit/form/DropDownButton"> <span>SEARCHES</span> <div data-dojo-type="p3/widget/TooltipDialog"> <div class="menuHeader" style="padding-right: 20px;">Advanced Search</div> <div><a class="navigationLink" href="/searches/TaxaSearch">Taxa</a></div> <div><a class="navigationLink" href="/searches/GenomeSearch">Genomes</a></div> <div><a class="navigationLink" href="/searches/StrainSearch">Strains</a></div> <div><a class="navigationLink" href="/searches/GenomicFeatureSearch">Features</a></div> <div><a class="navigationLink" href="/searches/ProteinSearch">Proteins</a></div> <div><a class="navigationLink" href="/searches/SpecialtyGeneSearch">Specialty Genes</a></div> <div><a class="navigationLink" href="/searches/DomainAndMotifSearch">Domains and Motifs</a></div> <div><a class="navigationLink" href="/searches/EpitopeSearch">Epitopes</a></div> <div><a class="navigationLink" href="/searches/ProteinStructureSearch">Protein Structures</a></div> <div><a class="navigationLink" href="/searches/PathwaySearch">Pathways</a></div> <div><a class="navigationLink" href="/searches/SubsystemSearch">Subsystems</a></div> <div><a class="navigationLink" href="/searches/SurveillanceSearch">Surveillance</a></div> <div><a class="navigationLink" href="/searches/SerologySearch">Serology</a></div> <div><a class="navigationLink" href="/searches/SFVTSearch">Sequence Feature Variant Types</a></div> </div> </div> <div class="topMenuButton showOnLoad dijitHidden" data-dojo-type="dijit/form/DropDownButton"> <span>TOOLS &amp; SERVICES</span> <div data-dojo-type="p3/widget/TooltipDialog"> <div> <div style="vertical-align: top;width:250px;margin-right:5px;display:inline-block"> <div class="menuHeader">Genomics</div> <div class="menuItems"> <div><a class="navigationLink" href="/app/Assembly2">Genome Assembly</a></div> <div><a class="navigationLink" href="/app/Annotation">Genome Annotation</a></div> <div><a class="navigationLink" href="/app/ComprehensiveGenomeAnalysis">Comprehensive Genome Analysis <span style="font-style: italic;">(B)</span></a></div> <div><a class="navigationLink" href="/app/Homology">BLAST</a></div> <div><a class="navigationLink" href="/app/PrimerDesign">Primer Design</a></div> <div><a class="navigationLink" href="/app/GenomeDistance">Similar Genome Finder</a></div> <div><a class="navigationLink" href="/app/GenomeAlignment">Genome Alignment</a></div> <div><a class="navigationLink" href="/app/Variation">Variation Analysis</a></div> <div><a class="navigationLink" href="/app/Tnseq">Tn-Seq Analysis</a></div> </div> <div class="menuHeader">Phylogenomics</div> <div 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href="/app/SARS2Wastewater">SARS-CoV-2 Wastewater Analysis</a></div> <div><a class="navigationLink" href="/app/SequenceSubmission">Influenza Sequence Submission</a></div> <div><a class="navigationLink" href="/app/HASubtypeNumberingConversion">Influenza HA Subtype Conversion</a></div> <div><a class="navigationLink" href="/app/SubspeciesClassification">Subspecies Classification</a></div> <div><a class="navigationLink" href="/app/ViralAssembly">Viral Assembly</a></div> </div> <p></p> <div class="menuHeader">Outbreak Tracker</div> <div class="menuItems"> <div><b><a class="navigationLink" href="/outbreaks/Mpox/#view_tab=overview">Mpox 2024</a></b></div> <div><b><a class="navigationLink" href="/outbreaks/H5N1/#view_tab=overview">Influenza H5N1 2024</a></b></div> <div><b><a class="navigationLink" href="/outbreaks/SARSCoV2/#view_tab=overview">SARS-CoV-2</a></b></div> </div> </div> </div> </div> </div> <div class="topMenuButton showOnLoad dijitHidden" data-dojo-type="dijit/form/DropDownButton"> 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onclick="toggleSubMenu(this)">ORGANISMS <span class="icon-chevron-down"></span></div> <div class="menu-items" style="display: none;"> <div style="column-count: 2;"> <a href="/view/Bacteria/2" title="Overview page for all Bacteria genomes">All Bacteria</a> <a href="/view/Taxonomy/2157" title="Overview page for all Archea genomes">All Archaea</a> <a href="/view/Taxonomy/10239" title="Overview page for all Viruses">All Viruses</a> <a href="/view/Host/?eq(taxon_lineage_ids,2759)#view_tab=genomes" title="Overview page for all Eukaryotic host genomes">Eukaryotic Hosts</a> </div> <div> <div class="menuHeader">Bacterial Pathogens</div> <div class="sub-menu" style="column-count: 3"> <span class="sub-menu-items"> <a href="/view/Taxonomy/469#view_tab=overview" title="Acinetobacter overview">Acinetobacter</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/1386#view_tab=overview" title="Bacillus overview">Bacillus</a> </span> <span class="sub-menu-items"> <a 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title="Rickettsia overview">Rickettsia</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/590#view_tab=overview" title="Salmonella overview">Salmonella</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/620#view_tab=overview" title="Shigella overview">Shigella</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/1279#view_tab=overview" title="Staphylococcus overview">Staphylococcus</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/1301#view_tab=overview" title="Streptococcus overview">Streptococcus</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/662#view_tab=overview" title="Vibrio overview">Vibrio</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/629#view_tab=overview" title="Yersinia overview">Yersinia</a> </span> </div> </div> <div> <div class="menuHeader">Viral Families</div> <div class="sub-menu" style="column-count: 3"> <span class="sub-menu-items"> <a href="/view/Taxonomy/10508#view_tab=overview" title="Adenoviridae overview">Adenoviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/137992#view_tab=overview" title="Asfarviridae overview">Asfarviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/1980410#view_tab=overview" title="Bunyavirales overview">Bunyavirales</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/11974#view_tab=overview" title="Caliciviridae overview">Caliciviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/11118#view_tab=overview" title="Coronaviridae overview">Coronaviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/11266#view_tab=overview" title="Filoviridae overview">Filoviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/11050#view_tab=overview" title="Flaviviridae overview">Flaviviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/10404#view_tab=overview" title="Hepadnaviridae overview">Hepadnaviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/291484#view_tab=overview" title="Hepeviridae overview">Hepeviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/548681#view_tab=overview" title="Herpesvirales overview">Herpesvirales</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/11308#view_tab=overview" title="Orthomyxoviridae overview">Orthomyxoviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/11158#view_tab=overview" title="Paramyxoviridae overview">Paramyxoviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/10780#view_tab=overview" title="Parvoviridae overview">Parvoviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/12058#view_tab=overview" title="Picornaviridae overview">Picornaviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/11244#view_tab=overview" title="Pneumoviridae overview">Pneumoviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/151341#view_tab=overview" title="Polyomaviridae overview">Polyomaviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/10240#view_tab=overview" title="Poxviridae overview">Poxviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/2732541#view_tab=overview" title="Reovirales overview">Reovirales</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/11270#view_tab=overview" title="Rhabdoviridae overview">Rhabdoviridae</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/11018#view_tab=overview" title="Togaviridae overview">Togaviridae</a> </span> </div> </div> <div> <div class="menuHeader">Featured Viruses</div> <div class="sub-menu" style="column-count: 3"> <span class="sub-menu-items"> <a href="/view/GenomeList/?eq(genome_name,phage)" title="Bacteriophages overview">Bacteriophages</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/12637#view_tab=overview" title="Dengue virus overview">Dengue virus</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/186536#view_tab=overview" title="Ebolavirus overview">Ebolavirus</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/12059#view_tab=overview" title="Enterovirus overview">Enterovirus</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/11102#view_tab=overview" title="Hepacivirus overview">Hepacivirus</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/11320#view_tab=overview" title="Influenza A virus overview">Influenza A virus</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/3052310#view_tab=overview" title="Mammarenavirus lassaense overview">Mammarenavirus lassaense</a> </span> <span class="sub-menu-items"> <a href="/view/Taxonomy/10244#view_tab=overview" title="Monkeypox virus overview">Monkeypox virus</a> </span> <span class="sub-menu-items"> <a 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class="icon-chevron-down"></span></div> <div class="menu-items" style="display: none"> <div><a class="TopMenuLink" href="/about">About BV-BRC</a></div> <div><a class="DialogButton" rel="reportProblem:">Contact Us</a></div> <div><a class="TopMenuLink" href="/team">Our Team</a></div> <div><a class="TopMenuLink" href="https://www.bv-brc.org/docs/news/index.html" target="_blank">Announcements</a></div> <div><a class="TopMenuLink" href="/brc-calendar">BRC Calendar</a></div> <div><a class="TopMenuLink" href="/publications">Publications</a></div> <div><a class="TopMenuLink" href="/citation">Citation</a></div> <div><a class="TopMenuLink" href="/related-resources">Related Resources</a></div> <div><a class="TopMenuLink navigationLinkOut" href="https://github.com/BV-BRC" target="_blank" rel="noopener">BV-BRC GitHub</a></div> <div><a class="TopMenuLink" href="/privacy-policy">Privacy Policy</a></div> </div> </div> </div> </nav> </div> <!-- --> <!-- <div class="msg-box-below-topnav"><strong>The BV-BRC scheduler will be undergoing maintenance on June 6, from 9:00AM-Noon (Chicago Time). Already running jobs will not be affected but job status and submission of new jobs will be unavailable. We are sorry for the inconvenience. -- BV-BRC Team</strong></div> --> <!-- <div class="msg-box-below-topnav"><strong>Welcome to the BV-BRC Alpha website. This site is used for active development and testing of the BV-BRC resource. Hence, the data and functionality may change frequently and without notice.</strong></div> --> <!-- <div class="msg-box-below-topnav"><strong>Welcome to the BV-BRC Beta website. This site is used to seek early community feedback for the BV-BRC resource, which is still under development. Please note that the data and functionality on this site may change frequently and without notice.</strong></div> --> </div> <div data-dojo-type="dijit/layout/ContentPane" data-dojo-props="region:'center'" style="padding:0px;border:0px solid #ddd;background:inherit;"> <div id="bv-brc-home"> <div id="bv-brc-home-container"> <div class="verification_message home-banner"> <p> <strong>Your email has not been verified. Click here to visit your profile and update your email address and/or resend the verification message.</strong> </p> </div> <!--<div class="top-banner-flex"> <div class="top-banner"> <!-- <p> We are pleased to welcome our PATRIC users to the release of the new Bacterial and Viral Bioinformatics Resource Center (BV-BRC). BV-BRC combines the data, tools, and technologies from the bacterial BRC (<a href="https://legacy.patricbrc.org" class="navigationLinkOut">Legacy PATRIC</a>) and the viral BRCs (<a href="https://www.fludb.org/brc/home.spg?decorator=influenza" class="navigationLinkOut">IRD</a> and <a href="https://www.viprbrc.org/brc/home.spg?decorator=vipr" class="navigationLinkOut">ViPR</a>) and will be replacing them entirely in the near future. You can learn more about the transition <a href="https://www.bv-brc.org/docs/news/2022/20220816-bv-brc-patric-redirect.html" class="navigationLinkOut">here</a>. </p> <!-- <p> Dear <a href="https://legacy.fludb.org" class="navigationLinkOut" style="font-weight: bold;">IRD</a> and <a href="https://legacy.viprbrc.org" class="navigationLinkOut" style="font-weight: bold;">ViPR</a> users, welcome to <a href="https://www.bv-brc.org/docs/overview.html" class="navigationLinkOut" style="font-weight: bold;">BV-BRC</a>. The migration of the data, tools, and services from the legacy IRD and ViPR applications to BV-BRC is now <strong>complete</strong>. All web traffic from the <strong>IRD</strong> and <strong>ViPR</strong> resources is also being forwarded to the BV-BRC home page. Please refer to this <a href="https://www.bv-brc.org/docs/quick_start/index.html" class="navigationLinkOut" style="font-weight: bold;">Quick Start Guide</a> to learn how to start using <strong>BV-BRC</strong>. <br> <br> If you have questions or need assistance, please contact us at <a href="mailto:help@bv-brc.org" style="font-weight: bold;">help@bv-brc.org</a>. </p> </div> </div> --> <div class="grid-container"> <div class="home-main home-main-left"> <div class="bv-brc-info card"> <h1>BACTERIAL AND VIRAL BIOINFORMATICS RESOURCE CENTER</h1> <p> Welcome to the Bacterial and Viral Bioinformatics Resource Center (BV-BRC), a comprehensive resource for bacterial and viral infectious disease research. BV-BRC provides integrated data, advanced bioinformatics tools, and workflows to support the scientific community in understanding and combating infectious diseases. Explore our <a href="https://www.bv-brc.org/docs/quick_start/index.html" target="_blank" style="font-weight: bold;">Quick Start Guide</a> to learn more about the platform鈥檚 features and capabilities. For questions or assistance, please don鈥檛 hesitate to <a href="mailto:help@bv-brc.org" style="font-weight: bold;">contact us</a>. </p> <div class="search"> <h3>SEARCH</h3> <div class="global-search"> <div style="padding: 6px 0px 2px 2px; flex-grow: 1"> <input style="width:100%;font-size:1em;" class="showOnLoad dijitHidden" data-dojo-type="p3/widget/GlobalSearch"/> </div> </div> </div> <div class="browse"> <h3>BROWSE</h3> <!--<div class="browse-options" style="display: flex; flex-grow: 1; justify-content: space-between;">--> <div class="browse-options"> <a href="/view/Bacteria/2" class="btn btn-blue">BACTERIA</a> <a href="/view/Taxonomy/2157" class="btn btn-blue">ARCHAEA</a> <a href="/view/Virus/10239" class="btn btn-blue">VIRUSES</a> <a href="/view/Host/?eq(taxon_lineage_ids,2759)#view_tab=genomes" class="btn btn-blue" id="eukaryoticHosts">EUKARYOTIC HOSTS</a> </div> </div> </div> <div class="bv-brc-mid"><!-- style="grid-row: 3/6"--> <div class="title"> <h2>ANALYZE DATA IN BV-BRC</h2> </div> <div id="analyze-section"> <div class="analyze bv-brc-mid-content card"> <p>Upload and analyze your data in the private workspace. <span class="HideWithAuth"><a href="/register" style="font-weight: bold;">Register</a> or <a href="/login" style="font-weight: bold;">Login</a> to get started.</span> </p> <div class="bv-brc-mid-content-links"> <div class="mid-content-section"> <h3>SEARCH</h3> <div class="mid-links"> <a href="/searches/TaxaSearch" class="navigationLink">Taxa</a> <a href="/searches/GenomeSearch" class="navigationLink">Genomes</a> <a href="/searches/ProteinSearch" class="navigationLink">Proteins</a> <a href="/searches/SpecialtyGeneSearch" class="navigationLink">Specialty Genes</a> <a href="/searches" style="text-decoration: underline;">All Searches...</a> </div> </div> <div class="mid-content-section"> <h3>ANALYZE</h3> <div class="mid-links"> <a href="/app/Assembly2" class="navigationLink">Assembly</a> <a href="/app/Annotation" class="navigationLink">Annotation</a> <a href="/app/Homology" class="navigationLink">BLAST</a> <a href="/app/MSA" class="navigationLink">MSA</a> <a href="/tools" style="text-decoration: underline;">All Tools &amp; Services...</a> </div> </div> <div class="mid-content-section"> <h3>MANAGE DATA</h3> <div class="mid-links"> <a href="https://bv-brc.org/docs/quick_references/workspaces/workspace.html" target="=_blank">Access Private Workspace</a> <a href="https://bv-brc.org/docs/quick_references/workspaces/groups.html" target="=_blank">Save Search Results</a> <a href="https://bv-brc.org/docs/quick_references/workspaces/data_upload.html" target="=_blank">Upload Data</a> <a href="https://bv-brc.org/docs/quick_references/workspaces/jobs.html" target="=_blank">Access Analysis Jobs</a> <a href="https://bv-brc.org/docs/quick_references/workspaces/workspace.html#creating-and-sharing-workspaces" target="=_blank">Share and Publish</a> </div> </div> <div class="mid-content-section"> <h3>BATCH ACCESS</h3> <div class="mid-links"> <a href="https://bv-brc.org/docs/cli_tutorial/index.html" target="=_blank">Command-Line Interface</a> <a href="https://bv-brc.org/api/doc/" target="=_blank">Data API</a> <a href="https://bv-brc.org/docs/quick_references/ftp.html" target="=_blank">FTP</a> </div> </div> </div> </div> <div class="mid-content-bottom"> <div class="mid-content-buttons"> <a href="https://bv-brc.org/docs/quick_start/index.html" class="btn btn-blue navigationLinkOut">QUICK START</a> <a href="https://bv-brc.org/docs/tutorial/index.html" class="btn btn-blue navigationLinkOut">TUTORIALS</a> <a href="https://bv-brc.org/docs/quick_references/index.html" class="btn btn-blue navigationLinkOut" id="referenceGuides">REFERENCE GUIDES</a> </div> </div> </div> </div> <div class="bv-brc-bottom"> <div class="title"> <h2>OUTBREAKS</h2> </div> <div class="outbreaks"> <div class="bv-brc-bottom-left card" style="flex-basis: 100% "> <div class="content"> <h2><a href="/outbreaks/Mpox/#view_tab=overview">Mpox 2024</a></h2> <div class="content-description"> <div class="content-image"> <img src="https://www.bv-brc.org/api/content/images/outbreaks/mpox/poxviridae_virion_image_single.png" alt="Influenza Virion"> </div> <p> Monkeypox virus, the cause of Mpox, is a zoonotic disease endemic to Africa. There are two primary clades: Clade I and Clade II. Since Jan 2022, over 99,000 global Mpox cases have been reported, mainly from Clade II.b. However, Clade I remains a concern with increasing outbreaks in Central Africa and recent cases outside its traditional range. </p> </div> </div> </div> <div class="bv-brc-bottom-right card" style="flex-basis: 100% "> <div class="content"> <h2><a href="/outbreaks/H5N1/#view_tab=overview">Influenza H5N1 2024</a></h2> <div class="content-description"> <div class="content-image"> <img src="https://www.bv-brc.org/api/content/images/outbreaks/H5N1/influenza_virion_image.png" alt="Influenza Virion"> </div> <p> The H5N1 virus, known as bird flu, poses serious risks to wildlife, agriculture, and humans. Since 2020, the 2.3.4.4b strain has spread globally, with rare but severe human cases linked to infected poultry and cattle. The BV-BRC offers the latest data, outbreak maps, and resources to support research and response efforts. Learn more about the evolving outbreak and its impact. </p> </div> </div> </div> </div> </div> </div> <div class="home-main home-main-right"> <div class="announcements card"> <h2>NEWS &amp; ANNOUNCEMENTS</h2> <ul class="slides" id="announcements-slides"></ul> <div class="dot-navigation" id="announcements-dot-navigation"></div> </div> <div class="linkedin-feed card" id="linkedin-feed"> <h2 style="margin-bottom: 0;">COMMUNITY NEWS</h2> <ul class="slides" id="linkedin-slides"></ul> <div class="dot-navigation" id="linkedin-dot-navigation" style="margin-top: 10px;"></div> </div> </div> </div> </div> </div> <footer id="bv-brc-footer"> <div id="bv-brc-footer-container"> <div> <h3>BRC Program</h3> <a href="https://www.niaid.nih.gov/research/bioinformatics-resource-centers"><img src="/patric/images/bv-brc/brc-logo.png" alt="BRC Logo"></a> </div> <div> <h3>Funding Statement</h3> <p>This project has been funded in whole or in part with Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Grant No. U24AI183849, awarded to the University of Chicago.</p> </div> <div> <h3>Follow Us</h3> <a href="https://twitter.com/BVBRC_DB" target="=_blank"><span class="icon-twitter-square fa-3x"></span></a> <a href="https://www.facebook.com/BVBRC19" target="=_blank"><span class="icon-facebook-square fa-3x"></span></a> <a href="https://www.youtube.com/c/BVBRC" target="=_blank"><span class="icon-youtube-square fa-3x"></span></a> <a href="https://reddit.com/r/BRC_users" target="=_blank"><span class="icon-reddit-square fa-3x"></span></a> <a href="https://github.com/BV-BRC" target="=_blank"><span class="icon-github-square fa-3x"></span></a> </div> </div> </footer> <style> body.patric { min-width: 320px; 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