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<!DOCTYPE html> <html lang="en-gb"> <head> <title>Help & Documentation</title> <link rel="stylesheet" type="text/css" media="all" href="/minified/5d939bb4aff322cd861cba56c9e084c2.css"/><link rel="stylesheet" type="text/css" media="all" href="/minified/416a0e3cbe56eac16d94592a4d5f3e09.image.css"/> <link href="/i/ensembl-favicon.png" type="image/png" rel="icon" /> <link rel="apple-touch-icon" type="image/png" href="/apple-touch-icon.png" /> <link href="//protists.ensembl.org/opensearch/all.xml" type="application/opensearchdescription+xml" rel="search" title="Ensembl (All)" /> <meta name="description" content="Ensembl Protists is a genome-centric portal for protist species of scientific interest" /> <meta name="viewport" content="target-densitydpi=device-dpi, width=device-width, initial-scale=1.0, maximum-scale=2.0, user-scalable=yes" /> <script>var prefetch = [];</script> </head> <body id="ensembl-webpage" class="ie ie7 ie67 static" data-pace="2"> <div id="min_width_container"> <div 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Annotation</a></li><li><img src="/i/leaf.gif"><a href="/info/genome/dna_align/" title="Nucleotide Sequence Alignments">Nucleotide Sequence Alignments</a></li><li><img src="/i/leaf.gif"><a href="/info/genome/variation/" title="Genomic variation">Genomic variation</a></li><li class="last"><img src="/i/leaf.gif"><a href="/info/genome/compara/" title="Comparative Genomics">Comparative Genomics</a></li></ul></li><li class="top_level parent"><img src="/i/open.gif" class="toggle _info_data_" alt=""><a href="/info/data/"><b>Accessing Ensembl Data</b></a><ul><li><img src="/i/leaf.gif"><a href="/info/data/export.html" title="Exporting data via website">Exporting data via website</a></li><li><img src="/i/leaf.gif"><a href="/info/data/api.html" title="API data access">API data access</a></li><li><img src="/i/leaf.gif"><a href="/info/data/eg_api.html" title="Ensembl Metadata Perl API">Ensembl Metadata Perl API</a></li><li><img src="/i/leaf.gif"><a href="/info/data/mysql.html" title="Public MySQL Server">Public MySQL Server</a></li><li><img src="/i/leaf.gif"><a href="/info/data/rest.html" title="REST service">REST service</a></li><li><img src="/i/leaf.gif"><a href="/info/data/ftp/" title="FTP Download">FTP Download</a></li><li class="last"><img src="/i/leaf.gif"><a href="/info/data/biomart/" title="BioMart">BioMart</a></li></ul></li><li class="top_level parent"><img src="/i/open.gif" class="toggle _info_docs_" alt=""><a href="/info/docs/"><b>API & Software</b></a><ul><li><img src="/i/leaf.gif"><a href="/info/docs/tools/" title="Ensembl Tools">Ensembl Tools</a></li><li><img src="/i/leaf.gif"><a href="/info/docs/api/" title="API Documentation">API Documentation</a></li><li><img src="/i/leaf.gif"><a href="/info/docs/Doxygen/" title="Doxygen Perl documentation">Doxygen Perl documentation</a></li><li><img src="/i/leaf.gif"><a href="/info/docs/das/" title="DAS (Distributed Annotation System)">DAS (Distributed Annotation System)</a></li><li><img src="/i/leaf.gif"><a href="/info/docs/eHive.html" title="eHive production system">eHive production system</a></li><li class="last"><img src="/i/leaf.gif"><a href="/info/docs/webcode/" title="Web code">Web code</a></li></ul></li><li class="top_level parent"><img src="/i/open.gif" class="toggle _info_about_" alt=""><a href="/info/about/"><b>About the Ensembl Project</b></a><ul><li><img src="/i/leaf.gif"><a href="/info/about/species.html" title="Species List">Species List</a></li><li><img src="/i/leaf.gif"><a href="/info/about/release_cycle.html" title="Release Cycle">Release Cycle</a></li><li><img src="/i/leaf.gif"><a href="/info/about/publications.html" title="Scientific Publications">Scientific Publications</a></li><li><img src="/i/leaf.gif"><a href="/info/about/outreach/" title="Workshops">Workshops</a></li><li><img src="/i/leaf.gif"><a href="/info/about/credits.html" title="Acknowledgements">Acknowledgements</a></li><li><img src="/i/leaf.gif"><a href="/info/about/collaborations/" title="Collaborations">Collaborations</a></li><li><img src="/i/leaf.gif"><a href="/info/about/contact/" title="Contact Us">Contact Us</a></li><li><img src="/i/leaf.gif"><a href="/info/about/legal/" title="Legal">Legal</a></li><li><img src="/i/leaf.gif"><a href="/info/about/code_of_conduct.html" title="Code of Conduct">Code of Conduct</a></li><li><img src="/i/leaf.gif"><a href="/info/about/jobs.html" title="Job Vacancies">Job Vacancies</a></li><li><img src="/i/leaf.gif"><a href="/info/about/ensembl_powered.html" title="Projects using Ensembl">Projects using Ensembl</a></li><li class="last"><img src="/i/leaf.gif"><a href="/info/about/sab.html" title="Scientific Advisory Board">Scientific Advisory Board</a></li></ul></li><li class="last"><img src="/i/leaf.gif" class="toggle sitemap.html" alt=""><a href="sitemap.html"><b>Table of Contents</b></a></li> </ul> <p class="invisible">.</p> </div> </div> <div id="main"> <ul class="breadcrumbs print_hide"><li><a class="home" href="//protists.ensembl.org">Home</a></li><li class="last">Help & Documentation</li></ul> <div id="content"><div id="static"> <h1>Help & Documentation</h1> <table class="blobs"><tr><td> <h2 class="first"><a href="/info/website/">Using this website</a></h2> <p>Our website offers lots of ways to view and interact with our genomic data - find out more!</p> <ul> <li><a href="/info/website/upload/">Adding custom tracks</a></li> <li><a href="/info/website/tutorials/">Tutorials</a></li> <li><a href="/info/website/glossary.html">Glossary</a></li> <li><a href="/Help/Faq" class="popup">FAQs</a> (Frequently Asked Questions)</li> </ul> <p style="text-align:right;padding-right:2em;"><a href="/info/website/">More...</a></p> </td><td> <h2 class="first"><a href="/info/genome/">Annotation & Prediction</a></h2> <p><img src="/img/4_species.png" alt="various species" class="float-right" style="width:72px;height:72px;padding-right:4px" />The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online.</p> <ul> <li><a href="/info/genome/assemblies/">Genome assemblies</a></li> <li><a href="/info/genome/annotation/">Gene annotation</a></li> <li><a href="/info/genome/alignments/">Nucleotide sequence alignments</a></li> <li><a href="/info/genome/variation/">Variation data</a></li> <li><a href="/info/genome/compara/">Comparative genomics</a></li> </td></tr><tr><td> <h2 class="first"><a href="/info/data/">Data access</a></h2> <p><img src="/img/e-database.gif" alt="db server" class="float-right" style="width:67px;height:76px;padding-right:8px" />All of our data is open-access and can be downloaded free of charge (<a href="/info/about/legal/">disclaimer</a>). Ways to access this data include:</p> <ul> <li><a href="/info/data/export.html">Export</a> features or sequence directly from web pages</li> <li><a href="/info/data/ftp/">FTP download</a> of complete datasets</li> <li>Access data from our <a href="https://rest.ensembl.org">REST server</a> using any Programming language</li> </ul> <p style="text-align:right;padding-right:2em;"><a href="/info/data/">More...</a></p> </td><td> <h2 class="first"><a href="/info/docs/">API & Software</a></h2> <p><a href="http://www.perl.com/" title="www.perl.com" target="_blank"><img src="/img/info/powered_by_perl.gif" alt="Powered by Perl" class="float-right" style="width:122px;height:55px" /></a> Ensembl releases all its software under an Apache-style open source <a href="/info/about/legal/code_licence.html">licence</a>. Our products include:</p> <ul> <li><a href="/info/docs/api/">Perl API</a> for direct data access</li> <li><a href="https://rest.ensembl.org">REST</a> server for language-agnostic access</li> <li><a href="/info/docs/tools/vep/index.html">Variant Effect Predictor</a> (VEP) and other command-line scripts</li> <li><a href="/info/docs/eHive.html">eHive</a> distributed processing system</li> <li><a href="/info/docs/webcode/">Web frontend</a> (Apache with mod_perl) for mirroring this website</li> </ul> <p style="text-align:right;padding-right:2em;"><a href="/info/docs/">More...</a></p> </td></tr></table> </div></div> </div> <div id="footer"> <div class="column-wrapper"> <div class="column-two left"> <p> Ensembl Protists release 60 - October 2024 © <span class="print_hide"><a href="http://www.ebi.ac.uk/" style="white-space:nowrap">EMBL-EBI</a></span> <span class="screen_hide_inline">EMBL-EBI</span> </p> </div> <p class="invisible">.</p> </div> <div class="column-wrapper"><hr /><div id="fat-footer"> <div class="column-four left"> <h3>About Us</h3> <p><a href="/info/about/">About us</a></p> <p><a href="/info/about/contact/">Contact us</a></p> <p><a href="/info/about/publications.html">Citing Ensembl Genomes</a></p> <p><a href="https://www.ebi.ac.uk/data-protection/ensembl/privacy-notice">Privacy policy</a></p> <p><a href="/info/about/legal/">Disclaimer</a></p> </div> <div class="column-four left"> <h3>Get help</h3> <p><a href="/info/website/">Using this website</a></p> <p><a href="/info/">Documentation</a></p> <p><a href="/info/website/upload/">Adding custom tracks</a></p> <p><a href="/info/data/">Downloading data</a></p> </div> <div class="column-four left"> <h3>Our sister sites</h3> <p><a href="http://www.ensembl.org">Ensembl</a></p><p><a href="http://bacteria.ensembl.org">Ensembl Bacteria</a></p><p><a href="http://fungi.ensembl.org">Ensembl Fungi</a></p><p><a href="http://plants.ensembl.org">Ensembl Plants</a></p><p><a href="http://metazoa.ensembl.org">Ensembl Metazoa</a></p> </div> <div class="column-four left"> <h3>Follow us</h3> <p><a class="media-icon" href="http://www.ensembl.info/"> <img alt="[RSS logo]" title="Ensembl blog" src="/i/rss_icon_16.png"></a> <a href="http://www.ensembl.info/">Blog</a></p> <p><a class="media-icon" href="https://twitter.com/ensemblgenomes"> <img alt="[twitter logo]" title="Follow us on Twitter!" src="/i/twitter.png"></a> <a href="https://twitter.com/ensemblgenomes">Twitter</a></p> </div> </div> <p class="invisible">.</p> </div> </div> </div> </div> </div> <form id="core_params" action="#" style="display:none"> <fieldset><input type="hidden" name="db" value="core" /></fieldset> </form> <input type="hidden" id="species_path" name="species_path" value="" /> <input type="hidden" id="gdpr_version" name="gdpr_version" value="2.0.0" /> <input type="hidden" id="gdpr_policy_url" name="gdpr_policy_url" value="https://www.ensembl.org/info/about/legal/privacy.html" /> <input type="hidden" id="gdpr_terms_url" 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