Genomics

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2024 </a> </li><li> <a href="/list/q-bio.GN/recent?skip=4&show=50"> Wed, 20 Nov 2024 </a> </li><li> <a href="/list/q-bio.GN/recent?skip=6&show=50"> Tue, 19 Nov 2024 </a> </li><li> <a href="/list/q-bio.GN/recent?skip=9&show=50"> Mon, 18 Nov 2024 </a> </li></ul> <p>See today's <a id="new-q-bio.GN" aria-labelledby="new-q-bio.GN" href="/list/q-bio.GN/new">new</a> changes</p> <div class='paging'>Total of 9 entries </div> <div class='morefewer'>Showing up to 50 entries per page: <a href=/list/q-bio.GN/recent?skip=0&show=25 rel="nofollow"> fewer</a> | <span style="color: #454545">more</span> | <span style="color: #454545">all</span> </div> <dl id='articles'> <h3>Fri, 22 Nov 2024 (showing 2 of 2 entries )</h3> <dt> <a name='item1'>[1]</a> <a href ="/abs/2411.14130" title="Abstract" id="2411.14130"> arXiv:2411.14130 </a> [<a href="/pdf/2411.14130" title="Download PDF" id="pdf-2411.14130" aria-labelledby="pdf-2411.14130">pdf</a>, <a href="/format/2411.14130" title="Other formats" id="oth-2411.14130" aria-labelledby="oth-2411.14130">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Evidence of epigenetic oncogenesis: a turning point in cancer research </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Capp,+J">Jean-Pascal Capp</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Aliaga,+B">Beno卯t Aliaga</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Pancaldi,+V">Vera Pancaldi</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Genomics (q-bio.GN)</span> </div> </div> </dd> <dt> <a name='item2'>[2]</a> <a href ="/abs/2411.13556" title="Abstract" id="2411.13556"> arXiv:2411.13556 </a> [<a href="/pdf/2411.13556" title="Download PDF" id="pdf-2411.13556" aria-labelledby="pdf-2411.13556">pdf</a>, <a href="/format/2411.13556" title="Other formats" id="oth-2411.13556" aria-labelledby="oth-2411.13556">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> gggenomes: effective and versatile visualizations for comparative genomics </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Hackl,+T">Thomas Hackl</a> (1), <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Ankenbrand,+M">Markus Ankenbrand</a> (2), <a href="https://arxiv.org/search/q-bio?searchtype=author&query=van+Adrichem,+B">Bart van Adrichem</a> (1), <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Wilkins,+D">David Wilkins</a> (3), <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Haslinger,+K">Kristina Haslinger</a> (4) ((1) Groningen Institute for Evolutionary Life Sciences, University of Groningen, The Netherlands (2) Center for Computational and Theoretical Biology, Julius-Maximilians-Universit盲t W眉rzburg, Germany (3) Discipline of General Practice, Adelaide Medical School, The University of Adelaide, Australia (4) Department of Chemical and Pharmaceutical Biology, Groningen Research Institute of Pharmacy, University of Groningen, The Netherlands)</div> <div class='list-comments mathjax'><span class='descriptor'>Comments:</span> TH and MA contributed equally to this work. Corresponding author: Thomas Hackl </div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Genomics (q-bio.GN)</span> </div> </div> </dd> </dl> <dl id='articles'> <h3>Thu, 21 Nov 2024 (showing 2 of 2 entries )</h3> <dt> <a name='item3'>[3]</a> <a href ="/abs/2411.12769" title="Abstract" id="2411.12769"> arXiv:2411.12769 </a> [<a href="/pdf/2411.12769" title="Download PDF" id="pdf-2411.12769" aria-labelledby="pdf-2411.12769">pdf</a>, <a href="/format/2411.12769" title="Other formats" id="oth-2411.12769" aria-labelledby="oth-2411.12769">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> ukbFGSEA: an R Package for Applying Fast Preranked Gene Set Enrichment Analysis to UK Biobank Exome Data </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Guo,+P">Pengjun Guo</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Zhu,+H">He Zhu</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Genomics (q-bio.GN)</span> </div> </div> </dd> <dt> <a name='item4'>[4]</a> <a href ="/abs/2411.13326" title="Abstract" id="2411.13326"> arXiv:2411.13326 </a> (cross-list from cs.NE) [<a href="/pdf/2411.13326" title="Download PDF" id="pdf-2411.13326" aria-labelledby="pdf-2411.13326">pdf</a>, <a href="/format/2411.13326" title="Other formats" id="oth-2411.13326" aria-labelledby="oth-2411.13326">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> An Evolutional Neural Network Framework for Classification of Microarray Data </div> <div class='list-authors'><a href="https://arxiv.org/search/cs?searchtype=author&query=Evari,+M+E">Maryam Eshraghi Evari</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Sulaiman,+M+N">Md Nasir Sulaiman</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Behjat,+A+R">Amir Rajabi Behjat</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Neural and Evolutionary Computing (cs.NE)</span>; Artificial Intelligence (cs.AI); Genomics (q-bio.GN) </div> </div> </dd> </dl> <dl id='articles'> <h3>Wed, 20 Nov 2024 (showing 2 of 2 entries )</h3> <dt> <a name='item5'>[5]</a> <a href ="/abs/2411.12010" title="Abstract" id="2411.12010"> arXiv:2411.12010 </a> [<a href="/pdf/2411.12010" title="Download PDF" id="pdf-2411.12010" aria-labelledby="pdf-2411.12010">pdf</a>, <a href="https://arxiv.org/html/2411.12010v1" title="View HTML" id="html-2411.12010" aria-labelledby="html-2411.12010" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.12010" title="Other formats" id="oth-2411.12010" aria-labelledby="oth-2411.12010">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Active learning for efficient discovery of optimal gene combinations in the combinatorial perturbation space </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Qin,+J">Jason Qin</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Wessels,+H">Hans-Hermann Wessels</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Fernandez-Granda,+C">Carlos Fernandez-Granda</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Hao,+Y">Yuhan Hao</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Genomics (q-bio.GN)</span>; Machine Learning (cs.LG) </div> </div> </dd> <dt> <a name='item6'>[6]</a> <a href ="/abs/2411.11915" title="Abstract" id="2411.11915"> arXiv:2411.11915 </a> [<a href="/pdf/2411.11915" title="Download PDF" id="pdf-2411.11915" aria-labelledby="pdf-2411.11915">pdf</a>, <a href="https://arxiv.org/html/2411.11915v1" title="View HTML" id="html-2411.11915" aria-labelledby="html-2411.11915" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.11915" title="Other formats" id="oth-2411.11915" aria-labelledby="oth-2411.11915">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Phenome-wide causal proteomics enhance systemic lupus erythematosus flare prediction: A study in Asian populations </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Chen,+L">Liying Chen</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Deng,+O">Ou Deng</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Fang,+T">Ting Fang</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Chen,+M">Mei Chen</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Zhang,+X">Xvfeng Zhang</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Cong,+R">Ruichen Cong</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Lu,+D">Dingqi Lu</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Zhang,+R">Runrun Zhang</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Jin,+Q">Qun Jin</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Wang,+X">Xinchang Wang</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Genomics (q-bio.GN)</span>; Machine Learning (cs.LG) </div> </div> </dd> </dl> <dl id='articles'> <h3>Tue, 19 Nov 2024 (showing 3 of 3 entries )</h3> <dt> <a name='item7'>[7]</a> <a href ="/abs/2411.11169" title="Abstract" id="2411.11169"> arXiv:2411.11169 </a> [<a href="/pdf/2411.11169" title="Download PDF" id="pdf-2411.11169" aria-labelledby="pdf-2411.11169">pdf</a>, <a href="https://arxiv.org/html/2411.11169v1" title="View HTML" id="html-2411.11169" aria-labelledby="html-2411.11169" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.11169" title="Other formats" id="oth-2411.11169" aria-labelledby="oth-2411.11169">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Validating GWAS Findings through Reverse Engineering of Contingency Tables </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Jiang,+Y">Yuzhou Jiang</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Ayday,+E">Erman Ayday</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Genomics (q-bio.GN)</span>; Cryptography and Security (cs.CR) </div> </div> </dd> <dt> <a name='item8'>[8]</a> <a href ="/abs/2411.11158" title="Abstract" id="2411.11158"> arXiv:2411.11158 </a> [<a href="/pdf/2411.11158" title="Download PDF" id="pdf-2411.11158" aria-labelledby="pdf-2411.11158">pdf</a>, <a href="https://arxiv.org/html/2411.11158v1" title="View HTML" id="html-2411.11158" aria-labelledby="html-2411.11158" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.11158" title="Other formats" id="oth-2411.11158" aria-labelledby="oth-2411.11158">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> Leveraging genomic deep learning models for non-coding variant effect prediction </div> <div class='list-authors'><a href="https://arxiv.org/search/q-bio?searchtype=author&query=Kathail,+P">Pooja Kathail</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Bajwa,+A">Ayesha Bajwa</a>, <a href="https://arxiv.org/search/q-bio?searchtype=author&query=Ioannidis,+N+M">Nilah M. Ioannidis</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Genomics (q-bio.GN)</span> </div> </div> </dd> <dt> <a name='item9'>[9]</a> <a href ="/abs/2411.11547" title="Abstract" id="2411.11547"> arXiv:2411.11547 </a> (cross-list from cs.DC) [<a href="/pdf/2411.11547" title="Download PDF" id="pdf-2411.11547" aria-labelledby="pdf-2411.11547">pdf</a>, <a href="https://arxiv.org/html/2411.11547v1" title="View HTML" id="html-2411.11547" aria-labelledby="html-2411.11547" rel="noopener noreferrer" target="_blank">html</a>, <a href="/format/2411.11547" title="Other formats" id="oth-2411.11547" aria-labelledby="oth-2411.11547">other</a>] </dt> <dd> <div class='meta'> <div class='list-title mathjax'><span class='descriptor'>Title:</span> gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs </div> <div class='list-authors'><a href="https://arxiv.org/search/cs?searchtype=author&query=Schmidt,+B">Bertil Schmidt</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Kallenborn,+F">Felix Kallenborn</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Wichmann,+A">Alexander Wichmann</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Chacon,+A">Alejandro Chacon</a>, <a href="https://arxiv.org/search/cs?searchtype=author&query=Hundt,+C">Christian Hundt</a></div> <div class='list-subjects'><span class='descriptor'>Subjects:</span> <span class="primary-subject">Distributed, Parallel, and Cluster Computing (cs.DC)</span>; Genomics (q-bio.GN) </div> </div> </dd> </dl> <dl id='articles'> <h3>Mon, 18 Nov 2024</h3> <p>No updates for this time period.</p> </dl> <div class='paging'>Total of 9 entries </div> <div class='morefewer'>Showing up to 50 entries per page: <a href=/list/q-bio.GN/recent?skip=0&show=25 rel="nofollow"> fewer</a> | <span style="color: #454545">more</span> | <span style="color: #454545">all</span> </div> </div> </div> </div> </main> <footer style="clear: both;"> <div class="columns is-desktop" role="navigation" aria-label="Secondary" style="margin: -0.75em -0.75em 0.75em -0.75em">  <div class="column" style="padding: 0;"> <div class="columns"> <div class="column"> <ul style="list-style: none; line-height: 2;"> <li><a href="https://info.arxiv.org/about">About</a></li> <li><a href="https://info.arxiv.org/help">Help</a></li> </ul> </div> <div class="column"> <ul style="list-style: none; line-height: 2;"> <li> <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512" class="icon filter-black" role="presentation"><title>contact arXiv</title><desc>Click here to contact arXiv</desc><path d="M502.3 190.8c3.9-3.1 9.7-.2 9.7 4.7V400c0 26.5-21.5 48-48 48H48c-26.5 0-48-21.5-48-48V195.6c0-5 5.7-7.8 9.7-4.7 22.4 17.4 52.1 39.5 154.1 113.6 21.1 15.4 56.7 47.8 92.2 47.6 35.7.3 72-32.8 92.3-47.6 102-74.1 131.6-96.3 154-113.7zM256 320c23.2.4 56.6-29.2 73.4-41.4 132.7-96.3 142.8-104.7 173.4-128.7 5.8-4.5 9.2-11.5 9.2-18.9v-19c0-26.5-21.5-48-48-48H48C21.5 64 0 85.5 0 112v19c0 7.4 3.4 14.3 9.2 18.9 30.6 23.9 40.7 32.4 173.4 128.7 16.8 12.2 50.2 41.8 73.4 41.4z"/></svg> <a href="https://info.arxiv.org/help/contact.html"> Contact</a> </li> <li> <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512" class="icon filter-black" role="presentation"><title>subscribe to arXiv mailings</title><desc>Click here to subscribe</desc><path d="M476 3.2L12.5 270.6c-18.1 10.4-15.8 35.6 2.2 43.2L121 358.4l287.3-253.2c5.5-4.9 13.3 2.6 8.6 8.3L176 407v80.5c0 23.6 28.5 32.9 42.5 15.8L282 426l124.6 52.2c14.2 6 30.4-2.9 33-18.2l72-432C515 7.8 493.3-6.8 476 3.2z"/></svg> <a href="https://info.arxiv.org/help/subscribe"> Subscribe</a> </li> </ul> </div> </div> </div>   <div class="column" style="padding: 0;"> <div class="columns"> <div class="column"> <ul style="list-style: none; 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