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<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd"> <html lang="ru"> <head> <title>Debian -- Пакеты программ в "buster", Подсекция science</title> <link rev="made" href="mailto:webmaster@debian.org"> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta name="Author" content="веб-мастер Debian, webmaster@debian.org"> <meta name="Description" content=""> <meta name="Keywords" content="Debian, buster, science"> <link href="/debpkg.css" rel="stylesheet" type="text/css" media="all"> <script src="/packages.js" type="text/javascript"></script> </head> <body> <div id="header"> <div id="upperheader"> <div id="logo">  <a href="https://www.debian.org/"><img src="/Pics/openlogo-50.png" alt="Debian" with="50" height="61"></a> </div>  <a href="#inner">не показывать навигацию</a> <a href="/">Packages</a> </div>   <div id="navbar"> <ul> <li><a href="https://www.debian.org/intro/about">About Debian</a></li> <li><a href="https://www.debian.org/distrib/">Getting Debian</a></li> <li><a href="https://www.debian.org/support">Support</a></li> <li><a href="https://www.debian.org/devel/">Developers' Corner</a></li> </ul> </div>  <div id="pnavbar">  / <a href="/" title="Домашняя страница пакетов Debian">Пакеты</a> / <a href="/buster/" title="Краткое описание комплекта">buster</a> / science </div>  </div>  <div id="content"> <h1>Пакеты программ в "buster", Подсекция science</h1> <dl> <dt><a href='3depict' id='3depict'>3depict</a> (0.0.21-1)</dt> <dd lang='en'>visualisation and analysis for single valued point data</dd> <dt><a href='abacas' id='abacas'>abacas</a> (1.3.1-5)</dt> <dd lang='en'>close gaps in genomic alignments from short reads</dd> <dt><a href='abinit' id='abinit'>abinit</a> (8.8.4-2)</dt> <dd lang='en'>package for electronic structure calculations</dd> <dt><a href='abyss' id='abyss'>abyss</a> (2.1.5-7)</dt> <dd lang='en'>de novo, parallel, sequence assembler for short reads</dd> <dt><a href='acedb-other' id='acedb-other'>acedb-other</a> (4.9.39+dfsg.02-4)</dt> <dd lang='en'>retrieval of DNA or protein sequences</dd> <dt><a href='acedb-other-belvu' id='acedb-other-belvu'>acedb-other-belvu</a> (4.9.39+dfsg.02-4)</dt> <dd lang='en'>transitional package for belvu</dd> <dt><a href='acedb-other-belvu'>acedb-other-belvu</a></dt><dd>виртуальный пакет, предоставляемый <a href='../belvu'>belvu</a></dd> <dt><a href='acedb-other-dotter' id='acedb-other-dotter'>acedb-other-dotter</a> (4.9.39+dfsg.02-4)</dt> <dd lang='en'>transitional package for dotter</dd> <dt><a href='acedb-other-dotter'>acedb-other-dotter</a></dt><dd>виртуальный пакет, предоставляемый <a href='../dotter'>dotter</a></dd> <dt><a href='aces3' id='aces3'>aces3</a> (3.0.8-6)</dt> <dd lang='en'>Advanced Concepts in Electronic Structure III</dd> <dt><a href='aces3-data' id='aces3-data'>aces3-data</a> (3.0.8-6)</dt> <dd lang='en'>Advanced Concepts in Electronic Structure III</dd> <dt><a href='achilles' id='achilles'>achilles</a> (2-9)</dt> <dd>симулятор искусственной жизни и эволюции</dd> <dt><a href='adapterremoval' id='adapterremoval'>adapterremoval</a> (2.2.3-1)</dt> <dd lang='en'>rapid adapter trimming, identification, and read merging of gene sequences</dd> <dt><a href='adapterremoval-examples' id='adapterremoval-examples'>adapterremoval-examples</a> (2.2.3-1)</dt> <dd lang='en'>rapid adapter trimming, identification, and read merging (example data)</dd> <dt><a href='adms' id='adms'>adms</a> (2.3.6-2)</dt> <dd lang='en'>Automatic device model synthesizer for Verilog-AMS</dd> <dt><a href='adun-core' id='adun-core'>adun-core</a> (0.81-13)</dt> <dd lang='en'>Molecular Simulator</dd> <dt><a href='aegean' id='aegean'>aegean</a> (0.16.0+dfsg-1)</dt> <dd lang='en'>integrated genome analysis toolkit</dd> <dt><a href='aeskulap' id='aeskulap'>aeskulap</a> (0.2.2-beta2+git20180219.8787e95-2)</dt> <dd>просмотр медицинских изображений и клиент для сетей DICOM</dd> <dt><a href='aevol' id='aevol'>aevol</a> (5.0-2+b1)</dt> <dd lang='en'>digital genetics model to run Evolution Experiments in silico</dd> <dt><a href='aghermann' id='aghermann'>aghermann</a> (1.1.2-2)</dt> <dd lang='en'>Sleep-research experiment manager</dd> <dt><a href='aladin' id='aladin'>aladin</a> (10.076+dfsg-1)</dt> <dd lang='en'>Interactive sky atlas for astronomical images and datasets</dd> <dt><a href='alfa' id='alfa'>alfa</a> (1.0-3+b1)</dt> <dd lang='en'>Automated Line Fitting Algorithm</dd> <dt><a href='alien-hunter' id='alien-hunter'>alien-hunter</a> (1.7-7)</dt> <dd lang='en'>Interpolated Variable Order Motifs to identify horizontally acquired DNA</dd> <dt><a href='altree' id='altree'>altree</a> (1.3.1-7+b1)</dt> <dd lang='en'>program to perform phylogeny-based association and localization analysis</dd> <dt><a href='altree-examples' id='altree-examples'>altree-examples</a> (1.3.1-7)</dt> <dd lang='en'>example files for ALTree</dd> <dt><a href='amap-align' id='amap-align'>amap-align</a> (2.2+git20080214.600fc29+dfsg-1)</dt> <dd lang='en'>Protein multiple alignment by sequence annealing</dd> <dt><a href='ampliconnoise' id='ampliconnoise'>ampliconnoise</a> (1.29-8)</dt> <dd lang='en'>removal of noise from 454 sequenced PCR amplicons</dd> <dt><a href='andi' id='andi'>andi</a> (0.12-4)</dt> <dd lang='en'>Efficient Estimation of Evolutionary Distances</dd> <dt><a href='anfo' id='anfo'>anfo</a> (0.98-7)</dt> <dd lang='en'>Short Read Aligner/Mapper from MPG</dd> <dt><a href='aoflagger' id='aoflagger'>aoflagger</a> (2.13.0-1+b2)</dt> <dd lang='en'>Find RFI in radio astronomical observations</dd> <dt><a href='apbs' id='apbs'>apbs</a> (1.4-1+b1)</dt> <dd lang='en'>Adaptive Poisson Boltzmann Solver</dd> <dt><a href='apertium-af-nl' id='apertium-af-nl'>apertium-af-nl</a> (0.2.0~r58256-2)</dt> <dd lang='en'>Apertium translation data for the Afrikaans-Dutch pair</dd> <dt><a href='apertium-all-dev' id='apertium-all-dev'>apertium-all-dev</a> (3.5.2-1)</dt> <dd lang='en'>Metapackage for all tools required for Apertium development</dd> <dt><a href='apertium-apy' id='apertium-apy'>apertium-apy</a> (0.11.4-2)</dt> <dd lang='en'>Apertium APY service</dd> <dt><a href='apertium-arg' id='apertium-arg'>apertium-arg</a> (0.1.2~r65494-2)</dt> <dd lang='en'>Apertium single language data for Aragonese</dd> <dt><a href='apertium-arg-cat' id='apertium-arg-cat'>apertium-arg-cat</a> (0.1.0~r64925-2)</dt> <dd lang='en'>Apertium translation data for the Aragonese-Catalan pair</dd> <dt><a href='apertium-bel' id='apertium-bel'>apertium-bel</a> (0.1.0~r81357-2)</dt> <dd lang='en'>Apertium single language data for Belarusian</dd> <dt><a href='apertium-bel-rus' id='apertium-bel-rus'>apertium-bel-rus</a> (0.2.0~r81186-2)</dt> <dd lang='en'>Apertium translation data for the Belarusian-Russian pair</dd> <dt><a href='apertium-br-fr' id='apertium-br-fr'>apertium-br-fr</a> (0.5.0~r61325-3)</dt> <dd lang='en'>Apertium linguistic data to translate between Breton and French</dd> <dt><a href='apertium-ca-it' id='apertium-ca-it'>apertium-ca-it</a> (0.1.1~r57554-2)</dt> <dd lang='en'>Apertium translation data for the Catalan-Italian pair</dd> <dt><a href='apertium-cat' id='apertium-cat'>apertium-cat</a> (2.6.0-1)</dt> <dd lang='en'>Apertium single language data for Catalan</dd> <dt><a href='apertium-cat-srd' id='apertium-cat-srd'>apertium-cat-srd</a> (1.0.0~r82995-2)</dt> <dd lang='en'>Apertium translation data for the Catalan-Sardinian pair</dd> <dt><a href='apertium-crh' id='apertium-crh'>apertium-crh</a> (0.2.0~r83161-2)</dt> <dd lang='en'>Apertium single language data for Crimean Tatar</dd> <dt><a href='apertium-crh-tur' id='apertium-crh-tur'>apertium-crh-tur</a> (0.3.0~r83159-2)</dt> <dd lang='en'>Apertium translation data for the Crimean Tatar-Turkish pair</dd> <dt><a href='apertium-cy-en' id='apertium-cy-en'>apertium-cy-en</a> (0.1.1~r57554-4)</dt> <dd lang='en'>Apertium translation data for the Welsh-English pair</dd> <dt><a href='apertium-dan' id='apertium-dan'>apertium-dan</a> (0.5.0~r67099-2)</dt> <dd lang='en'>Apertium single language data for Danish</dd> <dt><a href='apertium-dan-nor' id='apertium-dan-nor'>apertium-dan-nor</a> (1.3.0~r67099-2)</dt> <dd lang='en'>Apertium translation data for the Danish-Norwegian pair</dd> <dt><a href='apertium-dev' id='apertium-dev'>apertium-dev</a> (3.5.2-1)</dt> <dd lang='en'>Development tools and library for Apertium</dd> <dt><a href='apertium-en-gl' id='apertium-en-gl'>apertium-en-gl</a> (0.5.2~r57551-2)</dt> <dd lang='en'>Apertium translation data for the English-Galician pair</dd> <dt><a href='apertium-eo-en' id='apertium-eo-en'>apertium-eo-en</a> (1.0.0~r63833-2)</dt> <dd lang='en'>Apertium linguistic data to translate between Esperanto and English</dd> <dt><a href='apertium-eo-fr' id='apertium-eo-fr'>apertium-eo-fr</a> (0.9.0~r57551-2)</dt> <dd lang='en'>Apertium translation data for the Esperanto-French pair</dd> <dt><a href='apertium-es-ast' id='apertium-es-ast'>apertium-es-ast</a> (1.1.0~r51165-2)</dt> <dd lang='en'>Apertium translation data for the Spanish-Asturian pair</dd> <dt><a href='apertium-es-it' id='apertium-es-it'>apertium-es-it</a> (0.2.0~r78826-2)</dt> <dd lang='en'>Transitional dummy package for apertium-spa-ita</dd> <dt><a href='apertium-eu-en' id='apertium-eu-en'>apertium-eu-en</a> (0.3.1~r56205-2)</dt> <dd lang='en'>Apertium translation data for the Basque-English pair</dd> <dt><a href='apertium-fra' id='apertium-fra'>apertium-fra</a> (1.5.0-1)</dt> <dd lang='en'>Apertium single language data for French</dd> <dt><a href='apertium-fra-cat' id='apertium-fra-cat'>apertium-fra-cat</a> (1.5.0-1)</dt> <dd lang='en'>Apertium translation data for the French-Catalan pair</dd> <dt><a href='apertium-hbs' id='apertium-hbs'>apertium-hbs</a> (0.5.0~r68212-3)</dt> <dd lang='en'>Apertium single language data for Serbo-Croatian</dd> <dt><a href='apertium-hbs-eng' id='apertium-hbs-eng'>apertium-hbs-eng</a> (0.1.0~r57598-2)</dt> <dd lang='en'>Apertium translation data for the Serbo-Croatian - English pair</dd> <dt><a href='apertium-hbs-mkd' id='apertium-hbs-mkd'>apertium-hbs-mkd</a> (0.1.0~r76450-2.1)</dt> <dd lang='en'>Apertium translation data for the Serbo-Croatian-Macedonian pair</dd> <dt><a href='apertium-hbs-slv' id='apertium-hbs-slv'>apertium-hbs-slv</a> (0.1.0~r59294-2)</dt> <dd lang='en'>Apertium translation data for the Serbo-Croatian-Slovenian pair</dd> <dt><a href='apertium-hin' id='apertium-hin'>apertium-hin</a> (0.1.0~r59158-2)</dt> <dd lang='en'>Apertium single language data for Hindi</dd> <dt><a href='apertium-id-ms' id='apertium-id-ms'>apertium-id-ms</a> (0.1.1~r57551-2)</dt> <dd lang='en'>Apertium translation data for the Indonesian-Malay pair</dd> <dt><a href='apertium-is-sv' id='apertium-is-sv'>apertium-is-sv</a> (0.1.0~r76450-2)</dt> <dd lang='en'>Apertium translation data for the Icelandic-Swedish pair</dd> <dt><a href='apertium-isl' id='apertium-isl'>apertium-isl</a> (0.1.0~r65494-2)</dt> <dd lang='en'>Apertium single language data for Icelandic</dd> <dt><a href='apertium-isl-eng' id='apertium-isl-eng'>apertium-isl-eng</a> (0.1.0~r66083-2)</dt> <dd lang='en'>Apertium translation data for the Icelandic-English pair</dd> <dt><a href='apertium-ita' id='apertium-ita'>apertium-ita</a> (0.10.0~r82237-2)</dt> <dd lang='en'>Apertium single language data for Italian</dd> <dt><a href='apertium-kaz' id='apertium-kaz'>apertium-kaz</a> (0.1.0~r61338-2)</dt> <dd lang='en'>Apertium single language data for Kazakh</dd> <dt><a href='apertium-kaz-tat' id='apertium-kaz-tat'>apertium-kaz-tat</a> (0.2.1~r57554-2)</dt> <dd lang='en'>Apertium translation data for the Kazakh-Tatar pair</dd> <dt><a href='apertium-lex-tools' id='apertium-lex-tools'>apertium-lex-tools</a> (0.2.1-1)</dt> <dd lang='en'>Constraint-based lexical selection module</dd> <dt><a href='apertium-mk-bg' id='apertium-mk-bg'>apertium-mk-bg</a> (0.2.0~r49489-2)</dt> <dd lang='en'>Apertium translation data for the Macedonian-Bulgarian pair</dd> <dt><a href='apertium-mk-en' id='apertium-mk-en'>apertium-mk-en</a> (0.1.1~r57554-2)</dt> <dd lang='en'>Apertium translation data for the Macedonian-English pair</dd> <dt><a href='apertium-mlt-ara' id='apertium-mlt-ara'>apertium-mlt-ara</a> (0.2.0~r62623-2)</dt> <dd lang='en'>Apertium translation data for the Maltese-Arabic pair</dd> <dt><a href='apertium-nno' id='apertium-nno'>apertium-nno</a> (0.9.0~r69513-3)</dt> <dd lang='en'>Apertium single language data for Norwegian Nynorsk</dd> <dt><a href='apertium-nno-nob' id='apertium-nno-nob'>apertium-nno-nob</a> (1.1.0~r66076-2)</dt> <dd lang='en'>Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair</dd> <dt><a href='apertium-nob' id='apertium-nob'>apertium-nob</a> (0.9.0~r69513-2)</dt> <dd lang='en'>Apertium single language data for Norwegian Bokmål</dd> <dt><a href='apertium-oci' id='apertium-oci'>apertium-oci</a> (0.1.0-1)</dt> <dd lang='en'>Apertium single language data for Occitan</dd> <dt><a href='apertium-pol' id='apertium-pol'>apertium-pol</a> (0.1.1-1)</dt> <dd lang='en'>Apertium single language data for Polish</dd> <dt><a href='apertium-rus' id='apertium-rus'>apertium-rus</a> (0.2.0~r82706-1)</dt> <dd lang='en'>Apertium single language data for Russian</dd> <dt><a href='apertium-separable' id='apertium-separable'>apertium-separable</a> (0.3.2-1)</dt> <dd lang='en'>Reordering separable/discontiguous multiwords</dd> <dt><a href='apertium-sme-nob' id='apertium-sme-nob'>apertium-sme-nob</a> (0.6.0~r61921-2)</dt> <dd lang='en'>Apertium translation data for the Northern Sami-Norwegian Bokmål pair</dd> <dt><a href='apertium-spa' id='apertium-spa'>apertium-spa</a> (1.1.0~r79716-2)</dt> <dd lang='en'>Apertium single language data for Spanish</dd> <dt><a href='apertium-spa-arg' id='apertium-spa-arg'>apertium-spa-arg</a> (0.4.0~r64399-2)</dt> <dd lang='en'>Apertium translation data for the Spanish-Aragonese pair</dd> <dt><a href='apertium-spa-cat' id='apertium-spa-cat'>apertium-spa-cat</a> (2.1.0~r79717-2)</dt> <dd lang='en'>Apertium translation data for the Spanish-Catalan pair</dd> <dt><a href='apertium-spa-ita' id='apertium-spa-ita'>apertium-spa-ita</a> (0.2.0~r78826-2)</dt> <dd lang='en'>Apertium translation data for the Spanish-Italian pair</dd> <dt><a href='apertium-srd' id='apertium-srd'>apertium-srd</a> (1.2.0~r82994-2)</dt> <dd lang='en'>Apertium single language data for Sardinian</dd> <dt><a href='apertium-srd-ita' id='apertium-srd-ita'>apertium-srd-ita</a> (0.9.5~r82237-2)</dt> <dd lang='en'>Apertium translation data for the Sardinian-Italian pair</dd> <dt><a href='apertium-swe' id='apertium-swe'>apertium-swe</a> (0.7.0~r69513-2)</dt> <dd lang='en'>Apertium single language data for Swedish</dd> <dt><a href='apertium-swe-dan' id='apertium-swe-dan'>apertium-swe-dan</a> (0.7.0~r66063-2)</dt> <dd lang='en'>Apertium translation data for the Swedish-Danish pair</dd> <dt><a href='apertium-swe-nor' id='apertium-swe-nor'>apertium-swe-nor</a> (0.2.0~r69544-2)</dt> <dd lang='en'>Apertium translation data for the Swedish-Norwegian pair</dd> <dt><a href='apertium-szl' id='apertium-szl'>apertium-szl</a> (0.1.0-1)</dt> <dd lang='en'>Apertium single language data for Silesian</dd> <dt><a href='apertium-tat' id='apertium-tat'>apertium-tat</a> (0.1.0~r60887-2)</dt> <dd lang='en'>Apertium single language data for Tatar</dd> <dt><a href='apertium-tur' id='apertium-tur'>apertium-tur</a> (0.2.0~r83161-2)</dt> <dd lang='en'>Apertium single language data for Turkish</dd> <dt><a href='apertium-ukr' id='apertium-ukr'>apertium-ukr</a> (0.1.0~r82563-2)</dt> <dd lang='en'>Apertium single language data for Ukrainian</dd> <dt><a href='apertium-urd' id='apertium-urd'>apertium-urd</a> (0.1.0~r61311-2)</dt> <dd lang='en'>Apertium single language data for Urdu</dd> <dt><a href='apertium-urd-hin' id='apertium-urd-hin'>apertium-urd-hin</a> (0.1.0~r64379-2)</dt> <dd lang='en'>Apertium translation data for the Urdu-Hindi pair</dd> <dt><a href='aragorn' id='aragorn'>aragorn</a> (1.2.38-2)</dt> <dd lang='en'>tRNA and tmRNA detection in nucleotide sequences</dd> <dt><a href='arb' id='arb'>arb</a> (6.0.6-4) [non-free]</dt> <dd lang='en'>phylogenetic sequence analysis suite - main program</dd> <dt><a href='arb-common' id='arb-common'>arb-common</a> (6.0.6-4) [non-free]</dt> <dd lang='en'>phylogenetic sequence analysis suite - common files</dd> <dt><a href='arden' id='arden'>arden</a> (1.0-4)</dt> <dd lang='en'>specificity control for read alignments using an artificial reference</dd> <dt><a href='ariba' id='ariba'>ariba</a> (2.13.3+ds-1)</dt> <dd lang='en'>Antibiotic Resistance Identification By Assembly</dd> <dt><a href='art-nextgen-simulation-tools' id='art-nextgen-simulation-tools'>art-nextgen-simulation-tools</a> (20160605+dfsg-3)</dt> <dd lang='en'>simulation tools to generate synthetic next-generation sequencing reads</dd> <dt><a href='art-nextgen-simulation-tools-profiles' id='art-nextgen-simulation-tools-profiles'>art-nextgen-simulation-tools-profiles</a> (20160605+dfsg-3)</dt> <dd lang='en'>profiles for art simulation tools</dd> <dt><a href='artemis' id='artemis'>artemis</a> (17.0.1+dfsg-2)</dt> <dd lang='en'>genome browser and annotation tool</dd> <dt><a href='artfastqgenerator' id='artfastqgenerator'>artfastqgenerator</a> (0.0.20150519-3)</dt> <dd lang='en'>outputs artificial FASTQ files derived from a reference genome</dd> <dt><a href='artfastqgenerator-examples' id='artfastqgenerator-examples'>artfastqgenerator-examples</a> (0.0.20150519-3)</dt> <dd lang='en'>ou7puts artificial FASTQ files derived from a reference genome (examples)</dd> <dt><a href='asdftool' id='asdftool'>asdftool</a> (2.3.2-2)</dt> <dd lang='en'>Command line tool to manipulate ASDF scientific data files</dd> <dt><a href='ase' id='ase'>ase</a> (3.17.0-2)</dt> <dd lang='en'>Atomic Simulation Environment</dd> <dt><a href='ask' id='ask'>ask</a> (1.1.1-3)</dt> <dd lang='en'>Adaptive Sampling Kit for big experimental spaces</dd> <dt><a href='assemblytics' id='assemblytics'>assemblytics</a> (1.0+ds-1)</dt> <dd lang='en'>detect and analyze structural variants from a genome assembly</dd> <dt><a href='astro-tasks' id='astro-tasks'>astro-tasks</a> (2.0)</dt> <dd lang='en'>Debian Astronomy Pure Blend (tasksel tasks)</dd> <dt><a href='astromatic' id='astromatic'>astromatic</a> (1.1)</dt> <dd lang='en'>Astronomical pipeline software collection</dd> <dt><a href='astrometry-data-2mass' id='astrometry-data-2mass'>astrometry-data-2mass</a> (1.1) [contrib]</dt> <dd lang='en'>Astrometry.net 2MASS index files downloader</dd> <dt><a href='astrometry-data-2mass-00' id='astrometry-data-2mass-00'>astrometry-data-2mass-00</a> (1.1) [contrib]</dt> <dd lang='en'>Astrometry.net 2MASS index files downloader (2'-2.8')</dd> <dt><a href='astrometry-data-2mass-01' id='astrometry-data-2mass-01'>astrometry-data-2mass-01</a> (1.1) [contrib]</dt> <dd lang='en'>Astrometry.net 2MASS index files downloader (2.8'-4')</dd> <dt><a href='astrometry-data-2mass-02' id='astrometry-data-2mass-02'>astrometry-data-2mass-02</a> (1.1) [contrib]</dt> <dd lang='en'>Astrometry.net 2MASS index files downloader (4'-5.6')</dd> <dt><a href='astrometry-data-2mass-03' id='astrometry-data-2mass-03'>astrometry-data-2mass-03</a> (1.1) [contrib]</dt> <dd lang='en'>Astrometry.net 2MASS index files downloader (5.6'-8')</dd> <dt><a href='astrometry-data-2mass-04' id='astrometry-data-2mass-04'>astrometry-data-2mass-04</a> (1.1) [contrib]</dt> <dd lang='en'>Astrometry.net 2MASS index files downloader (8'-11')</dd> <dt><a href='astrometry-data-2mass-05' id='astrometry-data-2mass-05'>astrometry-data-2mass-05</a> (1.1) [contrib]</dt> <dd lang='en'>Astrometry.net 2MASS index files downloader (11'-16')</dd> <dt><a href='astrometry-data-2mass-06' id='astrometry-data-2mass-06'>astrometry-data-2mass-06</a> (1.1) [contrib]</dt> <dd lang='en'>Astrometry.net 2MASS index files downloader (16'-22')</dd> <dt><a href='astrometry-data-2mass-07' id='astrometry-data-2mass-07'>astrometry-data-2mass-07</a> (1.1) [contrib]</dt> <dd lang='en'>Astrometry.net 2MASS index files downloader (22'-30')</dd> <dt><a href='astrometry-data-2mass-08-19' id='astrometry-data-2mass-08-19'>astrometry-data-2mass-08-19</a> (1.1) [contrib]</dt> <dd lang='en'>Astrometry.net 2MASS index files downloader (30'-2000')</dd> <dt><a href='astrometry-data-tycho2' id='astrometry-data-tycho2'>astrometry-data-tycho2</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 index files</dd> <dt><a href='astrometry-data-tycho2-07' id='astrometry-data-tycho2-07'>astrometry-data-tycho2-07</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 index files (22'-30')</dd> <dt><a href='astrometry-data-tycho2-07-bigendian' id='astrometry-data-tycho2-07-bigendian'>astrometry-data-tycho2-07-bigendian</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 big endian index files (22'-30')</dd> <dt><a href='astrometry-data-tycho2-07-littleendian' id='astrometry-data-tycho2-07-littleendian'>astrometry-data-tycho2-07-littleendian</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 little endian index files (22'-30')</dd> <dt><a href='astrometry-data-tycho2-08' id='astrometry-data-tycho2-08'>astrometry-data-tycho2-08</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 index files (30'-44')</dd> <dt><a href='astrometry-data-tycho2-08-bigendian' id='astrometry-data-tycho2-08-bigendian'>astrometry-data-tycho2-08-bigendian</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 big endian index files (30'-44')</dd> <dt><a href='astrometry-data-tycho2-08-littleendian' id='astrometry-data-tycho2-08-littleendian'>astrometry-data-tycho2-08-littleendian</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 little endian index files (30'-44')</dd> <dt><a href='astrometry-data-tycho2-09' id='astrometry-data-tycho2-09'>astrometry-data-tycho2-09</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 index files (44'-60')</dd> <dt><a href='astrometry-data-tycho2-09-bigendian' id='astrometry-data-tycho2-09-bigendian'>astrometry-data-tycho2-09-bigendian</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 big endian index files (44'-60')</dd> <dt><a href='astrometry-data-tycho2-09-littleendian' id='astrometry-data-tycho2-09-littleendian'>astrometry-data-tycho2-09-littleendian</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 little endian index files (44'-60')</dd> <dt><a href='astrometry-data-tycho2-10-19' id='astrometry-data-tycho2-10-19'>astrometry-data-tycho2-10-19</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 index files (60'-2000')</dd> <dt><a href='astrometry-data-tycho2-10-19-bigendian' id='astrometry-data-tycho2-10-19-bigendian'>astrometry-data-tycho2-10-19-bigendian</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 big endian index files (60'-2000')</dd> <dt><a href='astrometry-data-tycho2-10-19-littleendian' id='astrometry-data-tycho2-10-19-littleendian'>astrometry-data-tycho2-10-19-littleendian</a> (2-4)</dt> <dd lang='en'>Astrometry.net Tycho-2 little endian index files (60'-2000')</dd> <dt><a href='astrometry.net' id='astrometry.net'>astrometry.net</a> (0.76+dfsg-3)</dt> <dd lang='en'>Astrometry plate solver</dd> <dt><a href='astronomical-almanac' id='astronomical-almanac'>astronomical-almanac</a> (5.6-6)</dt> <dd>астрономический альманах - вычисления позиции планет и звезд</dd> <dt><a href='astropy-utils' id='astropy-utils'>astropy-utils</a> (3.1.2-2)</dt> <dd lang='en'>Command line tools from astropy</dd> <dt><a href='atac' id='atac'>atac</a> (0~20150903+r2013-6)</dt> <dd lang='en'>genome assembly-to-assembly comparison</dd> <dt><a href='augustus' id='augustus'>augustus</a> (3.3.2+dfsg-2)</dt> <dd lang='en'>gene prediction in eukaryotic genomes</dd> <dt><a href='augustus-data' id='augustus-data'>augustus-data</a> (3.3.2+dfsg-2)</dt> <dd lang='en'>data files for AUGUSTUS</dd> <dt><a href='autodock' id='autodock'>autodock</a> (4.2.6-6)</dt> <dd lang='en'>analysis of ligand binding to protein structure</dd> <dt><a href='autodock-getdata' id='autodock-getdata'>autodock-getdata</a> (4.2.6-6)</dt> <dd lang='en'>instructions for getData to collect compounds</dd> <dt><a href='autodock-test' id='autodock-test'>autodock-test</a> (4.2.6-6)</dt> <dd lang='en'>test files for AutoDock</dd> <dt><a href='autodock-vina' id='autodock-vina'>autodock-vina</a> (1.1.2-5+b1)</dt> <dd lang='en'>docking of small molecules to proteins</dd> <dt><a href='autogrid' id='autogrid'>autogrid</a> (4.2.6-6)</dt> <dd lang='en'>pre-calculate binding of ligands to their receptor</dd> <dt><a href='autogrid-test' id='autogrid-test'>autogrid-test</a> (4.2.6-6)</dt> <dd lang='en'>test files for AutoGrid</dd> <dt><a href='avce00' id='avce00'>avce00</a> (2.0.0-7)</dt> <dd>преобразование ESRI Arcinfo Vector Coverage в формат E00</dd> <dt><a href='avogadro' id='avogadro'>avogadro</a> (1.2.0-4+b2)</dt> <dd lang='en'>Molecular Graphics and Modelling System</dd> <dt><a href='avogadro-data' id='avogadro-data'>avogadro-data</a> (1.2.0-4)</dt> <dd lang='en'>Molecular Graphics and Modelling System (Data Files)</dd> <dt><a href='axe-demultiplexer' id='axe-demultiplexer'>axe-demultiplexer</a> (0.3.3+dfsg-1)</dt> <dd lang='en'>Trie-based DNA sequencing read demultiplexer</dd> <dt><a href='bagel' id='bagel'>bagel</a> (1.2.2-1)</dt> <dd lang='en'>Computational Chemistry Package</dd> <dt><a href='baitfisher' id='baitfisher'>baitfisher</a> (1.2.7+git20180107.e92dbf2+dfsg-1)</dt> <dd lang='en'>software package for designing hybrid enrichment probes</dd> <dt><a href='bali-phy' id='bali-phy'>bali-phy</a> (3.4+dfsg-1)</dt> <dd lang='en'>Bayesian Inference of Alignment and Phylogeny</dd> <dt><a href='ballview' id='ballview'>ballview</a> (1.5.0+git20180813.37fc53c-3)</dt> <dd lang='en'>free molecular modeling and molecular graphics tool</dd> <dt><a href='bamtools' id='bamtools'>bamtools</a> (2.5.1+dfsg-3)</dt> <dd lang='en'>toolkit for manipulating BAM (genome alignment) files</dd> <dt><a href='bandage' id='bandage'>bandage</a> (0.8.1-1)</dt> <dd lang='en'>Bioinformatics Application for Navigating De novo Assembly Graphs Easily</dd> <dt><a href='barrnap' id='barrnap'>barrnap</a> (0.9+dfsg-1)</dt> <dd lang='en'>rapid ribosomal RNA prediction</dd> <dt><a href='bart' id='bart'>bart</a> (0.4.04-2)</dt> <dd lang='en'>tools for computational magnetic resonance imaging</dd> <dt><a href='bart-view' id='bart-view'>bart-view</a> (0.1.00-2)</dt> <dd lang='en'>viewer for multi-dimensional complex-valued data</dd> <dt><a href='bcbio' id='bcbio'>bcbio</a> (1.1.2-3)</dt> <dd lang='en'>toolkit for analysing high-throughput sequencing data</dd> <dt><a href='bcbio-doc' id='bcbio-doc'>bcbio-doc</a> (1.1.2-3)</dt> <dd lang='en'>Documentation for RNAseq-workflows of bcbio(-nextgen)</dd> <dt><a href='bcftools' id='bcftools'>bcftools</a> (1.9-1)</dt> <dd lang='en'>genomic variant calling and manipulation of VCF/BCF files</dd> <dt><a href='beads' id='beads'>beads</a> (1.1.18+dfsg-3+b1)</dt> <dd lang='en'>2-DE electrophoresis gel image spot detection</dd> <dt><a href='beagle' id='beagle'>beagle</a> (5.0-180928+dfsg-1+deb10u1)</dt> <dd lang='en'>Genotype calling, genotype phasing and imputation of ungenotyped markers</dd> <dt><a href='beast-mcmc' id='beast-mcmc'>beast-mcmc</a> (1.10.4+dfsg-1)</dt> <dd lang='en'>Bayesian MCMC phylogenetic inference</dd> <dt><a href='beast2-mcmc' id='beast2-mcmc'>beast2-mcmc</a> (2.5.1+dfsg-2)</dt> <dd lang='en'>Bayesian MCMC phylogenetic inference</dd> <dt><a href='bedops' id='bedops'>bedops</a> (2.4.35+dfsg-1)</dt> <dd lang='en'>high-performance genomic feature operations</dd> <dt><a href='bedtools' id='bedtools'>bedtools</a> (2.27.1+dfsg-4)</dt> <dd lang='en'>suite of utilities for comparing genomic features</dd> <dt><a href='bedtools-test' id='bedtools-test'>bedtools-test</a> (2.27.1+dfsg-4)</dt> <dd lang='en'>test data for the bedtools package</dd> <dt><a href='belvu' id='belvu'>belvu</a> (4.44.1+dfsg-3)</dt> <dd lang='en'>multiple sequence alignment viewer and phylogenetic tool</dd> <dt><a href='berkeley-express' id='berkeley-express'>berkeley-express</a> (1.5.2+dfsg-1+b2)</dt> <dd lang='en'>Streaming quantification for high-throughput sequencing</dd> <dt><a href='bibus' id='bibus'>bibus</a> (1.5.2+dfsg-1)</dt> <dd lang='en'>bibliographic database</dd> <dt><a href='bio-eagle' id='bio-eagle'>bio-eagle</a> (2.4.1-1)</dt> <dd lang='en'>Haplotype phasing within a genotyped cohort or using a phased reference panel</dd> <dt><a href='bio-eagle-examples' id='bio-eagle-examples'>bio-eagle-examples</a> (2.4.1-1)</dt> <dd lang='en'>Examples for bio-eagle</dd> <dt><a href='bio-rainbow' id='bio-rainbow'>bio-rainbow</a> (2.0.4+dfsg-1)</dt> <dd lang='en'>clustering and assembling short reads for bioinformatics</dd> <dt><a href='biogenesis' id='biogenesis'>biogenesis</a> (0.8-3)</dt> <dd>искусственная жизнь, симулирующая эволюцию организмов</dd> <dt><a href='bioperl' id='bioperl'>bioperl</a> (1.7.2-3)</dt> <dd lang='en'>Perl tools for computational molecular biology</dd> <dt><a href='bioperl-run' id='bioperl-run'>bioperl-run</a> (1.7.2-4)</dt> <dd lang='en'>BioPerl wrappers: scripts</dd> <dt><a href='biosig-tools' id='biosig-tools'>biosig-tools</a> (1.9.3-2)</dt> <dd lang='en'>format conversion tools for biomedical data formats</dd> <dt><a href='biosquid' id='biosquid'>biosquid</a> (1.9g+cvs20050121-11)</dt> <dd lang='en'>utilities for biological sequence analysis</dd> <dt><a href='biosyntax' id='biosyntax'>biosyntax</a> (1.0.0b-1)</dt> <dd lang='en'>Syntax Highlighting for Computational Biology (metapackage)</dd> <dt><a href='biosyntax-common' id='biosyntax-common'>biosyntax-common</a> (1.0.0b-1)</dt> <dd lang='en'>Syntax Highlighting for Computational Biology (common files)</dd> <dt><a href='biosyntax-example' id='biosyntax-example'>biosyntax-example</a> (1.0.0b-1)</dt> <dd lang='en'>Syntax Highlighting for Computational Biology (example)</dd> <dt><a href='biosyntax-gedit' id='biosyntax-gedit'>biosyntax-gedit</a> (1.0.0b-1)</dt> <dd lang='en'>Syntax Highlighting for Computational Biology (gedit)</dd> <dt><a href='biosyntax-less' id='biosyntax-less'>biosyntax-less</a> (1.0.0b-1)</dt> <dd lang='en'>Syntax Highlighting for Computational Biology (less)</dd> <dt><a href='biosyntax-vim' id='biosyntax-vim'>biosyntax-vim</a> (1.0.0b-1)</dt> <dd lang='en'>Syntax Highlighting for Computational Biology (vim)</dd> <dt><a href='bist' id='bist'>bist</a> (0.5.2-1.1+b3)</dt> <dd>инструмент для рисования химических соединений</dd> <dt><a href='bitseq' id='bitseq'>bitseq</a> (0.7.5+dfsg-4)</dt> <dd lang='en'>Bayesian Inference of Transcripts from Sequencing Data</dd> <dt><a href='bkchem' id='bkchem'>bkchem</a> (0.13.0-6)</dt> <dd lang='en'>Chemical structures editor</dd> <dt><a href='blasr' id='blasr'>blasr</a> (5.3.2+dfsg-1.1)</dt> <dd lang='en'>mapping single-molecule sequencing reads</dd> <dt><a href='blast2' id='blast2'>blast2</a> (1:2.8.1-1+deb10u1)</dt> <dd>пустой переходный пакет для ncbi-blash+-legacy</dd> <dt><a href='blimps-utils' id='blimps-utils'>blimps-utils</a> (3.9+ds-1) [non-free]</dt> <dd lang='en'>blocks database improved searcher</dd> <dt><a href='blixem' id='blixem'>blixem</a> (4.44.1+dfsg-3)</dt> <dd lang='en'>interactive browser of sequence alignments</dd> <dt><a href='bmt' id='bmt'>bmt</a> (0.6-1)</dt> <dd lang='en'>software analysis benchmarking toolkit</dd> <dt><a href='bodr' id='bodr'>bodr</a> (10-1)</dt> <dd lang='en'>Blue Obelisk Data Repository</dd> <dt><a href='boinc-app-seti' id='boinc-app-seti'>boinc-app-seti</a> (8.00~svn3725-3)</dt> <dd lang='en'>SETI@home application for the BOINC client</dd> <dt><a href='boinc-app-seti-graphics' id='boinc-app-seti-graphics'>boinc-app-seti-graphics</a> (8.00~svn3725-3)</dt> <dd lang='en'>SETI@home application for the BOINC client (with graphics)</dd> <dt><a href='bolt-lmm' id='bolt-lmm'>bolt-lmm</a> (2.3.2+dfsg-3+b1)</dt> <dd lang='en'>Efficient large cohorts genome-wide Bayesian mixed-model association testing</dd> <dt><a href='bolt-lmm-example' id='bolt-lmm-example'>bolt-lmm-example</a> (2.3.2+dfsg-3)</dt> <dd lang='en'>Examples for bolt-lmm</dd> <dt><a href='boolector' id='boolector'>boolector</a> (1.5.118.6b56be4.121013-1+b1)</dt> <dd lang='en'>SMT solver for bit-vectors and arrays</dd> <dt><a href='bowtie' id='bowtie'>bowtie</a> (1.2.2+dfsg-4)</dt> <dd lang='en'>Ultrafast memory-efficient short read aligner</dd> <dt><a href='bowtie-examples' id='bowtie-examples'>bowtie-examples</a> (1.2.2+dfsg-4)</dt> <dd lang='en'>Examples for bowtie, the ultrafast memory-efficient short read aligner</dd> <dt><a href='bowtie2' id='bowtie2'>bowtie2</a> (2.3.4.3-1)</dt> <dd lang='en'>ultrafast memory-efficient short read aligner</dd> <dt><a href='bowtie2-examples' id='bowtie2-examples'>bowtie2-examples</a> (2.3.4.3-1)</dt> <dd lang='en'>Examples for bowtie2</dd> <dt><a href='boxshade' id='boxshade'>boxshade</a> (3.3.1-12)</dt> <dd>создание красивых распечаток множественного выравнивания последовательностей</dd> <dt><a href='bppphyview' id='bppphyview'>bppphyview</a> (0.6.1-1)</dt> <dd lang='en'>Bio++ Phylogenetic Viewer</dd> <dt><a href='bppsuite' id='bppsuite'>bppsuite</a> (2.4.1-1)</dt> <dd lang='en'>Bio++ program suite</dd> <dt><a href='bppsuite-examples' id='bppsuite-examples'>bppsuite-examples</a> (2.4.1-1)</dt> <dd lang='en'>Examples for Bio++ program suite</dd> <dt><a href='brig' id='brig'>brig</a> (0.95+dfsg-2)</dt> <dd lang='en'>BLAST Ring Image Generator</dd> <dt><a href='bwa' id='bwa'>bwa</a> (0.7.17-3)</dt> <dd lang='en'>Burrows-Wheeler Aligner</dd> <dt><a href='cafeobj' id='cafeobj'>cafeobj</a> (1.5.9-1)</dt> <dd lang='en'>new generation algebraic specification and programming language</dd> <dt><a href='cafeobj-mode' id='cafeobj-mode'>cafeobj-mode</a> (1.5.9-1)</dt> <dd lang='en'>Emacs major mode for editing CafeOBJ source code</dd> <dt><a href='caffe-cpu' id='caffe-cpu'>caffe-cpu</a> (1.0.0+git20180821.99bd997-2+b1)</dt> <dd lang='en'>Fast, open framework for Deep Learning (Meta)</dd> <dt><a href='caffe-tools-cpu' id='caffe-tools-cpu'>caffe-tools-cpu</a> (1.0.0+git20180821.99bd997-2+b1)</dt> <dd lang='en'>Tools for fast, open framework for Deep Learning (CPU_ONLY)</dd> <dt><a href='caffe-tools-cuda' id='caffe-tools-cuda'>caffe-tools-cuda</a> (1.0.0+git20180821.99bd997-2+b1) [contrib]</dt> <dd lang='en'>Tools for fast, open framework for Deep Learning (CUDA)</dd> <dt><a href='cain' id='cain'>cain</a> (1.10+dfsg-3)</dt> <dd lang='en'>simulations of chemical reactions</dd> <dt><a href='cain-examples' id='cain-examples'>cain-examples</a> (1.10+dfsg-3)</dt> <dd lang='en'>examples for cain</dd> <dt><a href='cain-solvers' id='cain-solvers'>cain-solvers</a> (1.10+dfsg-3)</dt> <dd lang='en'>solvers for cain</dd> <dt><a href='calculix-ccx' id='calculix-ccx'>calculix-ccx</a> (2.11-1+b3)</dt> <dd lang='en'>Three-Dimensional Structural Finite Element Program</dd> <dt><a href='calculix-cgx' id='calculix-cgx'>calculix-cgx</a> (2.11+dfsg-1+b1)</dt> <dd lang='en'>Calculix cgx is a 3-dimensional pre- and post-processor for fem</dd> <dt><a href='camitk-actionstatemachine' id='camitk-actionstatemachine'>camitk-actionstatemachine</a> (4.1.2-3)</dt> <dd lang='en'>pipeline replay application for the CamiTK library</dd> <dt><a href='camitk-config' id='camitk-config'>camitk-config</a> (4.1.2-3)</dt> <dd lang='en'>Computer Assisted Medical Intervention Tool Kit - config</dd> <dt><a href='camitk-imp' id='camitk-imp'>camitk-imp</a> (4.1.2-3)</dt> <dd lang='en'>workbench application for the CamiTK library</dd> <dt><a href='canu' id='canu'>canu</a> (1.8+dfsg-2)</dt> <dd lang='en'>single molecule sequence assembler for genomes</dd> <dt><a href='casacore-data-igrf' id='casacore-data-igrf'>casacore-data-igrf</a> (12-1)</dt> <dd lang='en'>International Geomagnetic Reference Field data for casacore</dd> <dt><a href='casacore-data-jpl-de200' id='casacore-data-jpl-de200'>casacore-data-jpl-de200</a> (2007.07.05+ds.1-0+deb10u1)</dt> <dd lang='en'>Jet Propulsion Laboratory Development Ephemeris DE200 for casacore</dd> <dt><a href='casacore-data-jpl-de405' id='casacore-data-jpl-de405'>casacore-data-jpl-de405</a> (2007.07.05+ds.1-0+deb10u1)</dt> <dd lang='en'>Jet Propulsion Laboratory Development Ephemeris DE405 for casacore</dd> <dt><a href='casacore-data-lines' id='casacore-data-lines'>casacore-data-lines</a> (0+git2016.11.26-2)</dt> <dd lang='en'>Table of spectral line frequencies for casacore</dd> <dt><a href='casacore-data-observatories' id='casacore-data-observatories'>casacore-data-observatories</a> (0+git2018.12.08-1)</dt> <dd lang='en'>Table of radio observatory coordinates for casacore</dd> <dt><a href='casacore-data-sources' id='casacore-data-sources'>casacore-data-sources</a> (2-2)</dt> <dd lang='en'>Table of ICRF reference source coordinates for casacore</dd> <dt><a href='casacore-data-tai-utc' id='casacore-data-tai-utc'>casacore-data-tai-utc</a> (1.2)</dt> <dd lang='en'>Difference table between TAI and UTC for casacore</dd> <dt><a href='casacore-tools' id='casacore-tools'>casacore-tools</a> (3.0.0-4)</dt> <dd lang='en'>Tools built with CASA</dd> <dt><a href='cassbeam' id='cassbeam'>cassbeam</a> (1.1-1+b1)</dt> <dd lang='en'>Cassegrain antenna modelling</dd> <dt><a href='cassiopee' id='cassiopee'>cassiopee</a> (1.0.9-2)</dt> <dd lang='en'>index and search tool in genomic sequences</dd> <dt><a href='cba' id='cba'>cba</a> (0.3.6-4.1+b2)</dt> <dd lang='en'>Continuous Beam Analysis</dd> <dt><a href='cbflib-bin' id='cbflib-bin'>cbflib-bin</a> (0.9.5.18+dfsg1-1+b1)</dt> <dd lang='en'>utilities to manipulate CBF files</dd> <dt><a href='cbmc' id='cbmc'>cbmc</a> (5.10-5)</dt> <dd lang='en'>bounded model checker for C and C++ programs</dd> <dt><a href='cclib' id='cclib'>cclib</a> (1.6-1)</dt> <dd lang='en'>Parsers and algorithms for computational chemistry</dd> <dt><a href='cclib-data' id='cclib-data'>cclib-data</a> (1.1-1) [non-free]</dt> <dd lang='en'>Parsers and algorithms for computational chemistry (data files)</dd> <dt><a href='cct' id='cct'>cct</a> (20170919+dfsg-1)</dt> <dd lang='en'>visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences</dd> <dt><a href='cct-examples' id='cct-examples'>cct-examples</a> (20170919+dfsg-1)</dt> <dd lang='en'>example data for testing the package cct</dd> <dt><a href='cd-hit' id='cd-hit'>cd-hit</a> (4.6.8-2)</dt> <dd lang='en'>suite of programs designed to quickly group sequences</dd> <dt><a href='cdbfasta' id='cdbfasta'>cdbfasta</a> (0.99-20100722-5)</dt> <dd lang='en'>Constant DataBase indexing and retrieval tools for multi-FASTA files</dd> <dt><a href='centrifuge' id='centrifuge'>centrifuge</a> (1.0.3-2)</dt> <dd lang='en'>rapid and memory-efficient system for classification of DNA sequences</dd> <dt><a href='cernlib' id='cernlib'>cernlib</a> (20061220+dfsg3-4.4)</dt> <dd lang='en'>CERNLIB data analysis suite - general use metapackage</dd> <dt><a href='cernlib-core' id='cernlib-core'>cernlib-core</a> (20061220+dfsg3-4.4)</dt> <dd lang='en'>CERNLIB data analysis suite - main libraries and programs</dd> <dt><a href='cernlib-extras' id='cernlib-extras'>cernlib-extras</a> (20061220+dfsg3-4.4)</dt> <dd lang='en'>CERNLIB data analysis suite - extra programs</dd> <dt><a href='cernlib-montecarlo' id='cernlib-montecarlo'>cernlib-montecarlo</a> (20061220+dfsg3-3.1)</dt> <dd lang='en'>CERNLIB Monte Carlo libraries</dd> <dt><a href='cg3' id='cg3'>cg3</a> (1.1.7-1+b1)</dt> <dd lang='en'>Tools for using the 3rd edition of Constraint Grammar (CG-3)</dd> <dt><a href='cgns-convert' id='cgns-convert'>cgns-convert</a> (3.3.0-7~deb10u1)</dt> <dd lang='en'>CFD General Notation System - Conversion tools</dd> <dt><a href='cgview' id='cgview'>cgview</a> (0.0.20100111-4)</dt> <dd lang='en'>Circular Genome Viewer</dd> <dt><a href='ch5m3d' id='ch5m3d'>ch5m3d</a> (1.2.5+dfsg-2)</dt> <dd lang='en'>create and visualize 3-dimensional drawings of simple molecules</dd> <dt><a href='changeo' id='changeo'>changeo</a> (0.4.5-1)</dt> <dd lang='en'>Repertoire clonal assignment toolkit (Python 3)</dd> <dt><a href='checkit-tiff' id='checkit-tiff'>checkit-tiff</a> (0.2.3-2)</dt> <dd lang='en'>conformance checker for baseline TIFFs</dd> <dt><a href='chemical-structures' id='chemical-structures'>chemical-structures</a> (2.2.dfsg.0-13)</dt> <dd lang='en'>set of molecular structures in open formats</dd> <dt><a href='chemps2' id='chemps2'>chemps2</a> (1.8.9-1+b2)</dt> <dd lang='en'>Executable to call libchemps2-3 from the command line</dd> <dt><a href='chemtool' id='chemtool'>chemtool</a> (1.6.14-3)</dt> <dd lang='en'>chemical structures drawing program</dd> <dt><a href='chimeraslayer' id='chimeraslayer'>chimeraslayer</a> (20101212+dfsg1-2)</dt> <dd lang='en'>detects likely chimeras in PCR amplified DNA</dd> <dt><a href='chromhmm' id='chromhmm'>chromhmm</a> (1.18+dfsg-1)</dt> <dd lang='en'>Chromatin state discovery and characterization</dd> <dt><a href='chromimpute' id='chromimpute'>chromimpute</a> (1.0.3+dfsg-1)</dt> <dd lang='en'>Large-scale systematic epigenome imputation</dd> <dt><a href='circlator' id='circlator'>circlator</a> (1.5.5-3)</dt> <dd lang='en'>circularize genome assemblies</dd> <dt><a href='circos' id='circos'>circos</a> (0.69.6+dfsg-2)</dt> <dd>графопостроитель для визуализации данных</dd> <dt><a href='circos-tools' id='circos-tools'>circos-tools</a> (0.23-1)</dt> <dd>графопостроитель для визуализации данных — вспомогательные программы</dd> <dt><a href='ckon' id='ckon'>ckon</a> (0.7.1-3+b5)</dt> <dd lang='en'>automatic build tool for ROOT data analysis software</dd> <dt><a href='clearcut' id='clearcut'>clearcut</a> (1.0.9-3)</dt> <dd lang='en'>extremely efficient phylogenetic tree reconstruction</dd> <dt><a href='clonalframe' id='clonalframe'>clonalframe</a> (1.2-9)</dt> <dd lang='en'>inference of bacterial microevolution using multilocus sequence data</dd> <dt><a href='clonalframeml' id='clonalframeml'>clonalframeml</a> (1.11-3)</dt> <dd lang='en'>Efficient Inference of Recombination in Whole Bacterial Genomes</dd> <dt><a href='clonalorigin' id='clonalorigin'>clonalorigin</a> (1.0-3)</dt> <dd lang='en'>inference of homologous recombination in bacteria using whole genome sequences</dd> <dt><a href='clustalo' id='clustalo'>clustalo</a> (1.2.4-2)</dt> <dd lang='en'>General purpose multiple sequence alignment program for proteins</dd> <dt><a href='clustalw' id='clustalw'>clustalw</a> (2.1+lgpl-6)</dt> <dd lang='en'>global multiple nucleotide or peptide sequence alignment</dd> <dt><a href='clustalx' id='clustalx'>clustalx</a> (2.1+lgpl-8)</dt> <dd lang='en'>Multiple alignment of nucleic acid and protein sequences (graphical interface)</dd> <dt><a href='cluster3' id='cluster3'>cluster3</a> (1.57-1) [non-free]</dt> <dd lang='en'>Reimplementation of the Eisen-clustering software</dd> <dt><a href='cmor-tables' id='cmor-tables'>cmor-tables</a> (3.3-1)</dt> <dd lang='en'>MIP tables for the Climate Model Output Rewriter library</dd> <dt><a href='cmtk' id='cmtk'>cmtk</a> (3.3.1p1+dfsg-1)</dt> <dd lang='en'>Computational Morphometry Toolkit</dd> <dt><a href='cnvkit' id='cnvkit'>cnvkit</a> (0.9.5-3)</dt> <dd lang='en'>Copy number variant detection from targeted DNA sequencing</dd> <dt><a href='cod-tools' id='cod-tools'>cod-tools</a> (2.3+dfsg-3)</dt> <dd lang='en'>tools for manipulating CIF format files</dd> <dt><a href='code-aster-gui' id='code-aster-gui'>code-aster-gui</a> (1.13.1-2.1)</dt> <dd lang='en'>Graphical user interface for Code_Aster - client</dd> <dt><a href='code-aster-run' id='code-aster-run'>code-aster-run</a> (1.13.1-2.1)</dt> <dd lang='en'>Graphical user interface for Code_Aster - server</dd> <dt><a href='code-saturne' id='code-saturne'>code-saturne</a> (5.3.2+repack-1)</dt> <dd lang='en'>General purpose Computational Fluid Dynamics (CFD) software</dd> <dt><a href='code-saturne-bin' id='code-saturne-bin'>code-saturne-bin</a> (5.3.2+repack-1)</dt> <dd lang='en'>General purpose Computational Fluid Dynamics (CFD) software - binaries</dd> <dt><a href='code-saturne-data' id='code-saturne-data'>code-saturne-data</a> (5.3.2+repack-1)</dt> <dd lang='en'>General purpose Computational Fluid Dynamics (CFD) software - data</dd> <dt><a href='code-saturne-doc' id='code-saturne-doc'>code-saturne-doc</a> (5.3.2+repack-1)</dt> <dd lang='en'>General purpose Computational Fluid Dynamics (CFD) software - Documentation</dd> <dt><a href='code-saturne-include' id='code-saturne-include'>code-saturne-include</a> (5.3.2+repack-1)</dt> <dd lang='en'>General purpose Computational Fluid Dynamics (CFD) software - includes</dd> <dt><a href='codonw' id='codonw'>codonw</a> (1.4.4-4)</dt> <dd lang='en'>Correspondence Analysis of Codon Usage</dd> <dt><a href='coinor-cbc' id='coinor-cbc'>coinor-cbc</a> (2.9.9+repack1-1)</dt> <dd lang='en'>Coin-or branch-and-cut mixed integer programming solver</dd> <dt><a href='coinor-clp' id='coinor-clp'>coinor-clp</a> (1.16.11+repack1-1)</dt> <dd lang='en'>Coin-or linear programming solver</dd> <dt><a href='coinor-csdp' id='coinor-csdp'>coinor-csdp</a> (6.1.1-1+b2)</dt> <dd lang='en'>A software package for semidefinite programming</dd> <dt><a href='coinor-libcbc3' id='coinor-libcbc3'>coinor-libcbc3</a> (2.9.9+repack1-1)</dt> <dd lang='en'>Coin-or branch-and-cut mixed integer programming solver (shared libraries)</dd> <dt><a href='coinor-libcgl1' id='coinor-libcgl1'>coinor-libcgl1</a> (0.59.10+repack1-1)</dt> <dd lang='en'>COIN-OR Cut Generation Library</dd> <dt><a href='coinor-libclp1' id='coinor-libclp1'>coinor-libclp1</a> (1.16.11+repack1-1)</dt> <dd lang='en'>Coin-or linear programming solver (shared libraries)</dd> <dt><a href='coinor-libcoinutils3v5' id='coinor-libcoinutils3v5'>coinor-libcoinutils3v5</a> (2.10.14+repack1-1)</dt> <dd lang='en'>Coin-or collection of utility classes (binaries and libraries)</dd> <dt><a href='coinor-libosi1v5' id='coinor-libosi1v5'>coinor-libosi1v5</a> (0.107.9+repack1-1)</dt> <dd lang='en'>COIN-OR Open Solver Interface</dd> <dt><a href='coinor-libsymphony3' id='coinor-libsymphony3'>coinor-libsymphony3</a> (5.6.16+repack1-1.1)</dt> <dd lang='en'>COIN-OR solver for mixed-integer linear programs (shared libraries)</dd> <dt><a href='coinor-symphony' id='coinor-symphony'>coinor-symphony</a> (5.6.16+repack1-1.1)</dt> <dd lang='en'>COIN-OR solver for mixed-integer linear programs</dd> <dt><a href='colmap' id='colmap'>colmap</a> (3.5-1+b1)</dt> <dd lang='en'>Structure-from-Motion and Multi-View Stereo</dd> <dt><a href='comet-ms' id='comet-ms'>comet-ms</a> (2018012-1)</dt> <dd lang='en'>Tandem mass spectrometry (MS/MS) search engine</dd> <dt><a href='concavity' id='concavity'>concavity</a> (0.1+dfsg.1-4)</dt> <dd lang='en'>predictor of protein ligand binding sites from structure and conservation</dd> <dt><a href='connectome-workbench' id='connectome-workbench'>connectome-workbench</a> (1.3.2-1)</dt> <dd lang='en'>brain visualization, analysis and discovery tool</dd> <dt><a href='conservation-code' id='conservation-code'>conservation-code</a> (20110309.0-7)</dt> <dd lang='en'>protein sequence conservation scoring tool</dd> <dt><a href='cp2k' id='cp2k'>cp2k</a> (6.1-2)</dt> <dd lang='en'>Ab Initio Molecular Dynamics</dd> <dt><a href='cp2k-data' id='cp2k-data'>cp2k-data</a> (6.1-2)</dt> <dd lang='en'>Ab Initio Molecular Dynamics (data files)</dd> <dt><a href='cpl-plugin-amber' id='cpl-plugin-amber'>cpl-plugin-amber</a> (4.3.8+dfsg-1+b1)</dt> <dd lang='en'>ESO data reduction pipeline for the AMBER instrument</dd> <dt><a href='cpl-plugin-amber-calib' id='cpl-plugin-amber-calib'>cpl-plugin-amber-calib</a> (4.3.8+dfsg-1) [contrib]</dt> <dd lang='en'>ESO data reduction pipeline calibration data downloader for AMBER</dd> <dt><a href='cpl-plugin-fors' id='cpl-plugin-fors'>cpl-plugin-fors</a> (5.3.32+dfsg-1)</dt> <dd lang='en'>ESO data reduction pipeline for the FORS1/2 instruments</dd> <dt><a href='cpl-plugin-fors-calib' id='cpl-plugin-fors-calib'>cpl-plugin-fors-calib</a> (5.3.32+dfsg-1) [contrib]</dt> <dd lang='en'>ESO data reduction pipeline calibration data downloader for FORS2</dd> <dt><a href='cpl-plugin-giraf' id='cpl-plugin-giraf'>cpl-plugin-giraf</a> (2.16.3+dfsg-1+b1)</dt> <dd lang='en'>ESO data reduction pipeline for the GIRAFFE instrument</dd> <dt><a href='cpl-plugin-giraf-calib' id='cpl-plugin-giraf-calib'>cpl-plugin-giraf-calib</a> (2.16.3+dfsg-1) [contrib]</dt> <dd lang='en'>ESO data reduction pipeline calibration data downloader for GIRAFFE</dd> <dt><a href='cpl-plugin-hawki' id='cpl-plugin-hawki'>cpl-plugin-hawki</a> (2.4.3+dfsg-1)</dt> <dd lang='en'>ESO data reduction pipeline for the HAWK-I instrument</dd> <dt><a href='cpl-plugin-hawki-calib' id='cpl-plugin-hawki-calib'>cpl-plugin-hawki-calib</a> (2.4.3+dfsg-1)</dt> <dd lang='en'>ESO data reduction pipeline calibration data downloader for HAWK-I</dd> <dt><a href='cpl-plugin-kmos' id='cpl-plugin-kmos'>cpl-plugin-kmos</a> (2.1.0+dfsg-1)</dt> <dd lang='en'>ESO data reduction pipeline for the KMOS instrument</dd> <dt><a href='cpl-plugin-kmos-calib' id='cpl-plugin-kmos-calib'>cpl-plugin-kmos-calib</a> (2.1.0+dfsg-1) [contrib]</dt> <dd lang='en'>ESO data reduction pipeline calibration data downloader for KMOS</dd> <dt><a href='cpl-plugin-muse' id='cpl-plugin-muse'>cpl-plugin-muse</a> (2.6+dfsg-1)</dt> <dd lang='en'>ESO data reduction pipeline for the MUSE instrument</dd> <dt><a href='cpl-plugin-muse-calib' id='cpl-plugin-muse-calib'>cpl-plugin-muse-calib</a> (2.6+dfsg-1) [contrib]</dt> <dd lang='en'>ESO data reduction pipeline calibration data downloader for MUSE</dd> <dt><a href='cpl-plugin-naco' id='cpl-plugin-naco'>cpl-plugin-naco</a> (4.4.6+dfsg-1)</dt> <dd lang='en'>ESO data reduction pipeline for the NaCo instrument</dd> <dt><a href='cpl-plugin-naco-calib' id='cpl-plugin-naco-calib'>cpl-plugin-naco-calib</a> (4.4.6+dfsg-1) [contrib]</dt> <dd lang='en'>ESO data reduction pipeline NaCo calibration data downloader</dd> <dt><a href='cpl-plugin-uves' id='cpl-plugin-uves'>cpl-plugin-uves</a> (5.9.1+dfsg-1+b1)</dt> <dd lang='en'>ESO data reduction pipeline for the UVES instrument</dd> <dt><a href='cpl-plugin-uves-calib' id='cpl-plugin-uves-calib'>cpl-plugin-uves-calib</a> (5.9.1+dfsg-1) [contrib]</dt> <dd lang='en'>ESO data reduction pipeline calibration data downloader for UVES</dd> <dt><a href='cpl-plugin-vimos' id='cpl-plugin-vimos'>cpl-plugin-vimos</a> (3.2.3+dfsg-2+b1)</dt> <dd lang='en'>ESO data reduction pipeline for the VIMOS instrument</dd> <dt><a href='cpl-plugin-vimos-calib' id='cpl-plugin-vimos-calib'>cpl-plugin-vimos-calib</a> (3.2.3+dfsg-2) [contrib]</dt> <dd lang='en'>ESO data reduction pipeline calibration data downloader for VIMOS</dd> <dt><a href='cpl-plugin-visir' id='cpl-plugin-visir'>cpl-plugin-visir</a> (4.3.7+dfsg-1+b1)</dt> <dd lang='en'>ESO data reduction pipeline for the VISIR instrument</dd> <dt><a href='cpl-plugin-visir-calib' id='cpl-plugin-visir-calib'>cpl-plugin-visir-calib</a> (4.3.7+dfsg-1) [contrib]</dt> <dd lang='en'>ESO data reduction pipeline calibration data downloader for VISIR</dd> <dt><a href='cpl-plugin-xshoo' id='cpl-plugin-xshoo'>cpl-plugin-xshoo</a> (3.2.0+dfsg-1+b1)</dt> <dd lang='en'>ESO data reduction pipeline for the XSHOOTER instrument</dd> <dt><a href='cpl-plugin-xshoo-calib' id='cpl-plugin-xshoo-calib'>cpl-plugin-xshoo-calib</a> (3.2.0+dfsg-1) [contrib]</dt> <dd lang='en'>ESO data reduction pipeline calibration data downloader for XSHOOTER</dd> <dt><a href='cpuinfo' id='cpuinfo'>cpuinfo</a> (0.0~git20190201.d5e37ad-1)</dt> <dd lang='en'>CPU INFOrmation library (binary utilities)</dd> <dt><a href='crac' id='crac'>crac</a> (2.5.0+dfsg-3)</dt> <dd lang='en'>integrated RNA-Seq read analysis</dd> <dt><a href='critterding' id='critterding'>critterding</a> (1.0-beta12.1-1.3+b1)</dt> <dd>эволюция искусственной жизни</dd> <dt><a href='ctdconverter' id='ctdconverter'>ctdconverter</a> (2.0-4)</dt> <dd lang='en'>Convert CTD files into Galaxy tool and CWL CommandLineTool files</dd> <dt><a href='ctsim' id='ctsim'>ctsim</a> (6.0.2-2)</dt> <dd>моделирование процесса компьютерной томографии</dd> <dt><a href='ctsim-help' id='ctsim-help'>ctsim-help</a> (6.0.2-2)</dt> <dd lang='en'>Online help file for CTSim</dd> <dt><a href='cufflinks' id='cufflinks'>cufflinks</a> (2.2.1+dfsg.1-3+b1) [non-free]</dt> <dd lang='en'>Transcript assembly, differential expression and regulation for RNA-Seq</dd> <dt><a href='cutadapt' id='cutadapt'>cutadapt</a> (1.18-1)</dt> <dd lang='en'>Clean biological sequences from high-throughput sequencing reads</dd> <dt><a href='cwltool' id='cwltool'>cwltool</a> (1.0.20181217162649+dfsg-10)</dt> <dd lang='en'>Common Workflow Language reference implementation</dd> <dt><a href='daligner' id='daligner'>daligner</a> (1.0+git20180524.fd21879-1)</dt> <dd>выравнивание длинных нуклеотидных последовательностей</dd> <dt><a href='dans-gdal-scripts' id='dans-gdal-scripts'>dans-gdal-scripts</a> (0.24-3+b1)</dt> <dd lang='en'>GDAL contributed tools by Geographic Information Network of Alaska</dd> <dt><a href='darknet' id='darknet'>darknet</a> (0.0.0+git20180914.61c9d02e-1)</dt> <dd lang='en'>Open Source Neural Networks in C</dd> <dt><a href='dascrubber' id='dascrubber'>dascrubber</a> (1.1-1)</dt> <dd lang='en'>alignment-based scrubbing pipeline for DNA sequencing reads</dd> <dt><a href='datalad' id='datalad'>datalad</a> (0.11.2-2)</dt> <dd lang='en'>data files management and distribution platform</dd> <dt><a href='datalad-container' id='datalad-container'>datalad-container</a> (0.2.2-2)</dt> <dd lang='en'>DataLad extension for working with containerized environments</dd> <dt><a href='dawg' id='dawg'>dawg</a> (1.2-2)</dt> <dd lang='en'>simulate the evolution of recombinant DNA sequences</dd> <dt><a href='dazzdb' id='dazzdb'>dazzdb</a> (1.0+git20180908.0bd5e07-1)</dt> <dd lang='en'>manage nucleotide sequencing read data</dd> <dt><a href='dcl-f77' id='dcl-f77'>dcl-f77</a> (7.3.3-1)</dt> <dd lang='en'>GFD-DENNOU Club Library (DCL) - FORTRAN77 version</dd> <dt><a href='dcm2niix' id='dcm2niix'>dcm2niix</a> (1.0.20181125-1)</dt> <dd lang='en'>next generation DICOM to NIfTI converter</dd> <dt><a href='dcmtk' id='dcmtk'>dcmtk</a> (3.6.4-2.1+deb10u1) [security]</dt> <dd lang='en'>OFFIS DICOM toolkit command line utilities</dd> <dt><a href='debian-astro-logo' id='debian-astro-logo'>debian-astro-logo</a> (2.0)</dt> <dd lang='en'>Debian Astronomy Pure Blends Logo</dd> <dt><a href='deepnano' id='deepnano'>deepnano</a> (0.0+git20170813.e8a621e-3)</dt> <dd lang='en'>alternative basecaller for MinION reads of genomic sequences</dd> <dt><a href='deepnano-data' id='deepnano-data'>deepnano-data</a> (0.0+git20170813.e8a621e-3)</dt> <dd lang='en'>alternative basecaller for MinION reads of genomic sequences (data)</dd> <dt><a href='delly' id='delly'>delly</a> (0.8.1-2)</dt> <dd lang='en'>Structural variant discovery by read analysis</dd> <dt><a href='dh-r' id='dh-r'>dh-r</a> (20190121)</dt> <dd lang='en'>Debian helper tools for packaging R libraries</dd> <dt><a href='dialign' id='dialign'>dialign</a> (2.2.1-10)</dt> <dd lang='en'>Segment-based multiple sequence alignment</dd> <dt><a href='dialign-tx' id='dialign-tx'>dialign-tx</a> (1.0.2-12)</dt> <dd lang='en'>Segment-based multiple sequence alignment</dd> <dt><a href='dialign-tx-data' id='dialign-tx-data'>dialign-tx-data</a> (1.0.2-12)</dt> <dd lang='en'>Segment-based multiple sequence alignment (data files)</dd> <dt><a href='diamond-aligner' id='diamond-aligner'>diamond-aligner</a> (0.9.24+dfsg-1)</dt> <dd lang='en'>accelerated BLAST compatible local sequence aligner</dd> <dt><a href='dicomnifti' id='dicomnifti'>dicomnifti</a> (2.33.1-1)</dt> <dd>конвертирует файлы DICOM в формат NIfTI</dd> <dt><a href='dicompyler' id='dicompyler'>dicompyler</a> (0.4.2.0-2)</dt> <dd lang='en'>radiation therapy research platform</dd> <dt><a href='dimbl' id='dimbl'>dimbl</a> (0.15-2.1)</dt> <dd lang='en'>Distributed Memory Based Learner</dd> <dt><a href='dindel' id='dindel'>dindel</a> (1.01-wu1-3+dfsg-1+b1)</dt> <dd lang='en'>determines indel calls from short-read data</dd> <dt><a href='discosnp' id='discosnp'>discosnp</a> (2.3.0-2)</dt> <dd lang='en'>discovering Single Nucleotide Polymorphism from raw set(s) of reads</dd> <dt><a href='disulfinder' id='disulfinder'>disulfinder</a> (1.2.11-8)</dt> <dd lang='en'>cysteines disulfide bonding state and connectivity predictor</dd> <dt><a href='disulfinder-data' id='disulfinder-data'>disulfinder-data</a> (1.2.11-8)</dt> <dd lang='en'>data files for predictor of disulfide bonds in proteins</dd> <dt><a href='dlmodelbox' id='dlmodelbox'>dlmodelbox</a> (0.1.3-1)</dt> <dd lang='en'>Swiss Army Knife of Deep Learning Models</dd> <dt><a href='dnaclust' id='dnaclust'>dnaclust</a> (3-6+b1)</dt> <dd lang='en'>tool for clustering millions of short DNA sequences</dd> <dt><a href='doris' id='doris'>doris</a> (5.0.3~beta+dfsg-7) [contrib]</dt> <dd lang='en'>Delft object-oriented radar interferometric software</dd> <dt><a href='dotter' id='dotter'>dotter</a> (4.44.1+dfsg-3)</dt> <dd lang='en'>detailed comparison of two genomic sequences</dd> <dt><a href='dozzaqueux' id='dozzaqueux'>dozzaqueux</a> (3.51-2)</dt> <dd lang='en'>simulator for chemical mixtures</dd> <dt><a href='dozzaqueux-data' id='dozzaqueux-data'>dozzaqueux-data</a> (3.51-2)</dt> <dd lang='en'>databases for chemical mixtures</dd> <dt><a href='dpuser' id='dpuser'>dpuser</a> (3.3+p1+dfsg-2+b1)</dt> <dd lang='en'>Interactive language for handling numbers, strings, and matrices</dd> <dt><a href='drawxtl' id='drawxtl'>drawxtl</a> (5.5-3+b3)</dt> <dd>просмотр кристаллических структур</dd> <dt><a href='drslib' id='drslib'>drslib</a> (0.3.1.p3-1)</dt> <dd lang='en'>Command-line tools for the Data Reference Syntax library</dd> <dt><a href='dsdp' id='dsdp'>dsdp</a> (5.8-9.4)</dt> <dd lang='en'>Software for Semidefinite Programming</dd> <dt><a href='dssp' id='dssp'>dssp</a> (3.0.0-3+b1)</dt> <dd lang='en'>protein secondary structure assignment based on 3D structure</dd> <dt><a href='dwgsim' id='dwgsim'>dwgsim</a> (0.1.12-2)</dt> <dd lang='en'>short sequencing read simulator</dd> <dt><a href='dx' id='dx'>dx</a> (1:4.4.4-12)</dt> <dd lang='en'>OpenDX (IBM Visualization Data Explorer) - main package</dd> <dt><a href='dxf2gcode' id='dxf2gcode'>dxf2gcode</a> (20170925-4)</dt> <dd lang='en'>prepares drawings of parts for automatic machine tools</dd> <dt><a href='dxsamples' id='dxsamples'>dxsamples</a> (4.4.0-4)</dt> <dd lang='en'>Sample programs for the OpenDX Data Explorer</dd> <dt><a href='e-mem' id='e-mem'>e-mem</a> (1.0.1-2)</dt> <dd lang='en'>Efficient computation of Maximal Exact Matches for very large genomes</dd> <dt><a href='e00compr' id='e00compr'>e00compr</a> (1.0.1-5)</dt> <dd lang='en'>Program to read/write Arcinfo compressed E00 files</dd> <dt><a href='ea-utils' id='ea-utils'>ea-utils</a> (1.1.2+dfsg-5)</dt> <dd lang='en'>command-line tools for processing biological sequencing data</dd> <dt><a href='easychem' id='easychem'>easychem</a> (0.6-8+b1)</dt> <dd>рисование молекул и двумерных химических формул</dd> <dt><a href='ecaccess' id='ecaccess'>ecaccess</a> (4.0.1-1)</dt> <dd lang='en'>clients to access ECMWF facilities</dd> <dt><a href='ecflow-client' id='ecflow-client'>ecflow-client</a> (4.12.0-1)</dt> <dd lang='en'>Client tools for Meteorological workflow</dd> <dt><a href='ecflow-server' id='ecflow-server'>ecflow-server</a> (4.12.0-1)</dt> <dd lang='en'>Meteorological workflow controller - server</dd> <dt><a href='ecopcr' id='ecopcr'>ecopcr</a> (1.0.1+dfsg-1)</dt> <dd lang='en'>estimate PCR barcode primers quality</dd> <dt><a href='edfbrowser' id='edfbrowser'>edfbrowser</a> (1.67+dfsg-1)</dt> <dd lang='en'>viewer for biosignal storage files such as bdf and edf</dd> <dt><a href='edlib-aligner' id='edlib-aligner'>edlib-aligner</a> (1.2.4-1)</dt> <dd lang='en'>edlib sequence alignment tool using edit distance</dd> <dt><a href='edtsurf' id='edtsurf'>edtsurf</a> (0.2009-6)</dt> <dd lang='en'>triangulated mesh surfaces for protein structures</dd> <dt><a href='eigensoft' id='eigensoft'>eigensoft</a> (7.2.1+dfsg-1)</dt> <dd lang='en'>reduction of population bias for genetic analyses</dd> <dt><a href='elastix' id='elastix'>elastix</a> (4.9.0-1)</dt> <dd lang='en'>toolbox for rigid and nonrigid registration of images</dd> <dt><a href='elk-lapw' id='elk-lapw'>elk-lapw</a> (5.4.24-2)</dt> <dd lang='en'>All-Electron Density-Functional Electronic Structure Code</dd> <dt><a href='elki' id='elki'>elki</a> (0.7.1-10.1)</dt> <dd lang='en'>Data mining algorithm development framework</dd> <dt><a href='elki-dev' id='elki-dev'>elki-dev</a> (0.7.1-10.1)</dt> <dd lang='en'>Data mining algorithm development framework - development files</dd> <dt><a href='elph' id='elph'>elph</a> (1.0.1-2)</dt> <dd lang='en'>DNA/protein sequence motif finder</dd> <dt><a href='embassy-domainatrix' id='embassy-domainatrix'>embassy-domainatrix</a> (0.1.660-3)</dt> <dd lang='en'>Extra EMBOSS commands to handle domain classification file</dd> <dt><a href='embassy-domalign' id='embassy-domalign'>embassy-domalign</a> (0.1.660-3)</dt> <dd lang='en'>Extra EMBOSS commands for protein domain alignment</dd> <dt><a href='embassy-domsearch' id='embassy-domsearch'>embassy-domsearch</a> (1:0.1.660-3)</dt> <dd lang='en'>Extra EMBOSS commands to search for protein domains</dd> <dt><a href='embassy-phylip' id='embassy-phylip'>embassy-phylip</a> (3.69.660-3) [non-free]</dt> <dd lang='en'>EMBOSS conversions of the programs in the phylip package</dd> <dt><a href='emboss' id='emboss'>emboss</a> (6.6.0+dfsg-7+b1)</dt> <dd lang='en'>European molecular biology open software suite</dd> <dt><a href='emboss-data' id='emboss-data'>emboss-data</a> (6.6.0+dfsg-7)</dt> <dd lang='en'>data files for the EMBOSS package</dd> <dt><a href='emboss-explorer' id='emboss-explorer'>emboss-explorer</a> (2.2.0-10)</dt> <dd lang='en'>web-based GUI to EMBOSS</dd> <dt><a href='emboss-lib' id='emboss-lib'>emboss-lib</a> (6.6.0+dfsg-7+b1)</dt> <dd lang='en'>EMBOSS Libraries</dd> <dt><a href='engauge-digitizer' id='engauge-digitizer'>engauge-digitizer</a> (10.10+ds.1-1)</dt> <dd lang='en'>interactively extracts numbers from bitmap graphs or maps</dd> <dt><a href='ent' id='ent'>ent</a> (1.2debian-2)</dt> <dd lang='en'>pseudorandom number sequence test program</dd> <dt><a href='epsilon-bin' id='epsilon-bin'>epsilon-bin</a> (0.9.2+dfsg-4)</dt> <dd lang='en'>Library for wavelet image compression - tools</dd> <dt><a href='ergo' id='ergo'>ergo</a> (3.5-1+b1)</dt> <dd lang='en'>Quantum chemistry program for large-scale calculations</dd> <dt><a href='eso-midas' id='eso-midas'>eso-midas</a> (19.02pl1.0-1)</dt> <dd lang='en'>European Southern Observatory Munich Image Data Analysis System</dd> <dt><a href='eso-midas-testdata' id='eso-midas-testdata'>eso-midas-testdata</a> (19.02pl1.0-1)</dt> <dd lang='en'>Test data files for ESO-MIDAS</dd> <dt><a href='eso-pipelines' id='eso-pipelines'>eso-pipelines</a> (1.2)</dt> <dd lang='en'>ESO VLT Instrument pipeline collection</dd> <dt><a href='esorex' id='esorex'>esorex</a> (3.13.1-1+deb10u1)</dt> <dd lang='en'>Execution Tool for European Southern Observatory pipelines</dd> <dt><a href='estscan' id='estscan'>estscan</a> (3.0.3-3)</dt> <dd lang='en'>ORF-independent detector of coding DNA sequences</dd> <dt><a href='esys-particle' id='esys-particle'>esys-particle</a> (2.3.5+dfsg1-2.1)</dt> <dd lang='en'>Software for particle-based numerical modelling. MPI version.</dd> <dt><a href='etsf-io' id='etsf-io'>etsf-io</a> (1.0.4-4)</dt> <dd lang='en'>Binary tools to check, merge and read ETSF files</dd> <dt><a href='examl' id='examl'>examl</a> (3.0.21-2)</dt> <dd lang='en'>Exascale Maximum Likelihood (ExaML) code for phylogenetic inference</dd> <dt><a href='exonerate' id='exonerate'>exonerate</a> (2.4.0-4)</dt> <dd lang='en'>generic tool for pairwise sequence comparison</dd> <dt><a href='expeyes' id='expeyes'>expeyes</a> (4.4.4+dfsg-4)</dt> <dd lang='en'>hardware & software framework for developing science experiments</dd> <dt><a href='expeyes-clib' id='expeyes-clib'>expeyes-clib</a> (4.4.4+dfsg-4)</dt> <dd lang='en'>hardware & software framework for developing science experiments</dd> <dt><a href='eye' id='eye'>eye</a> (19.0221.2026~ds-1)</dt> <dd lang='en'>semantic web reasoning engine</dd> <dt><a href='eyes17' id='eyes17'>eyes17</a> (4.4.4+dfsg-4)</dt> <dd lang='en'>hardware & software framework for developing science experiments</dd> <dt><a href='fast5' id='fast5'>fast5</a> (0.6.5-2)</dt> <dd lang='en'>utilities for manipulating Oxford Nanopore Fast5 files</dd> <dt><a href='fasta3' id='fasta3'>fasta3</a> (36.3.8g-1) [non-free]</dt> <dd lang='en'>tools for searching collections of biological sequences</dd> <dt><a href='fasta3-doc' id='fasta3-doc'>fasta3-doc</a> (36.3.8g-1) [non-free]</dt> <dd lang='en'>user guide for FASTA tools</dd> <dt><a href='fastahack' id='fastahack'>fastahack</a> (0.0+git20160702.bbc645f+dfsg-6)</dt> <dd lang='en'>utility for indexing and sequence extraction from FASTA files</dd> <dt><a href='fastaq' id='fastaq'>fastaq</a> (3.17.0-2)</dt> <dd lang='en'>FASTA and FASTQ file manipulation tools</dd> <dt><a href='fastdnaml' id='fastdnaml'>fastdnaml</a> (1.2.2-14)</dt> <dd lang='en'>Tool for construction of phylogenetic trees of DNA sequences</dd> <dt><a href='fastlink' id='fastlink'>fastlink</a> (4.1P-fix100+dfsg-2)</dt> <dd lang='en'>faster version of pedigree programs of Linkage</dd> <dt><a href='fastml' id='fastml'>fastml</a> (3.1-4)</dt> <dd lang='en'>maximum likelihood ancestral amino-acid sequence reconstruction</dd> <dt><a href='fastp' id='fastp'>fastp</a> (0.19.6+dfsg-1)</dt> <dd lang='en'>Ultra-fast all-in-one FASTQ preprocessor</dd> <dt><a href='fastqc' id='fastqc'>fastqc</a> (0.11.8+dfsg-2)</dt> <dd lang='en'>quality control for high throughput sequence data</dd> <dt><a href='fastqtl' id='fastqtl'>fastqtl</a> (2.184+dfsg-6+b1)</dt> <dd lang='en'>Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes</dd> <dt><a href='fasttree' id='fasttree'>fasttree</a> (2.1.10-2)</dt> <dd lang='en'>phylogenetic trees from alignments of nucleotide or protein sequences</dd> <dt><a href='fastx-toolkit' id='fastx-toolkit'>fastx-toolkit</a> (0.0.14-6)</dt> <dd lang='en'>FASTQ/A short nucleotide reads pre-processing tools</dd> <dt><a href='fcc' id='fcc'>fcc</a> (2.8-1+b3)</dt> <dd lang='en'>Script to compile C/C++ programs and link to Fortran libraries</dd> <dt><a href='feedgnuplot' id='feedgnuplot'>feedgnuplot</a> (1.51-1)</dt> <dd lang='en'>Pipe-oriented frontend to Gnuplot</dd> <dt><a href='ffindex' id='ffindex'>ffindex</a> (0.9.9.9-2)</dt> <dd lang='en'>simple index/database for huge amounts of small files</dd> <dt><a href='figtree' id='figtree'>figtree</a> (1.4.4-3)</dt> <dd lang='en'>graphical phylogenetic tree viewer</dd> <dt><a href='fitgcp' id='fitgcp'>fitgcp</a> (0.0.20150429-2)</dt> <dd lang='en'>fitting genome coverage distributions with mixture models</dd> <dt><a href='fitscut' id='fitscut'>fitscut</a> (1.4.4-4+b4)</dt> <dd lang='en'>Extract cutouts from FITS image format files</dd> <dt><a href='fitsh' id='fitsh'>fitsh</a> (0.9.2-1+b1)</dt> <dd lang='en'>Software package for astronomical image processing</dd> <dt><a href='fitspng' id='fitspng'>fitspng</a> (1.4-1)</dt> <dd lang='en'>FITS to PNG converter</dd> <dt><a href='fitsverify' id='fitsverify'>fitsverify</a> (4.19-1+b1)</dt> <dd lang='en'>FITS File Format-Verification Tool</dd> <dt><a href='fityk' id='fityk'>fityk</a> (1.3.1-3)</dt> <dd lang='en'>general-purpose nonlinear curve fitting and data analysis</dd> <dt><a href='flexbar' id='flexbar'>flexbar</a> (1:3.4.0-2)</dt> <dd lang='en'>flexible barcode and adapter removal for sequencing platforms</dd> <dt><a href='flextra' id='flextra'>flextra</a> (5.0-12)</dt> <dd lang='en'>Trajectory model for tracing air transport phenomena</dd> <dt><a href='fml-asm' id='fml-asm'>fml-asm</a> (0.1-5)</dt> <dd lang='en'>tool for assembling Illumina short reads in small regions</dd> <dt><a href='foma-bin' id='foma-bin'>foma-bin</a> (0.9.18+r243-1+b3)</dt> <dd lang='en'>Xerox-compatible finite-state compiler - library</dd> <dt><a href='form' id='form'>form</a> (4.2.1-1)</dt> <dd lang='en'>Symbolic manipulation system</dd> <dt><a href='fractalnow' id='fractalnow'>fractalnow</a> (0.8.2-2)</dt> <dd lang='en'>Fast, advanced fractal generator</dd> <dt><a href='freebayes' id='freebayes'>freebayes</a> (1.2.0-2)</dt> <dd lang='en'>Bayesian haplotype-based polymorphism discovery and genotyping</dd> <dt><a href='freecad' id='freecad'>freecad</a> (0.18~pre1+dfsg1-5+deb10u1) [security]</dt> <dd>расширяемая САПР с открытым исходным кодом</dd> <dt><a href='freecad-common' id='freecad-common'>freecad-common</a> (0.18~pre1+dfsg1-5+deb10u1) [security]</dt> <dd>расширяемая САПР с открытым исходным кодом — общие файлы</dd> <dt><a href='freecad-python2' id='freecad-python2'>freecad-python2</a> (0.18~pre1+dfsg1-5+deb10u1) [security]</dt> <dd lang='en'>Extensible Open Source CAx program - Python 2 binaries</dd> <dt><a href='freecad-python3' id='freecad-python3'>freecad-python3</a> (0.18~pre1+dfsg1-5+deb10u1) [security]</dt> <dd>расширяемая САПР с открытым исходным кодом — двоичные файлы для Python 3</dd> <dt><a href='freecad-runtime' id='freecad-runtime'>freecad-runtime</a> (0.18~pre1+dfsg1-5+deb10u1) [security]</dt> <dd lang='en'>Extensible Open Source CAx program - runtime files</dd> <dt><a href='freecontact' id='freecontact'>freecontact</a> (1.0.21-7+b1)</dt> <dd lang='en'>fast protein contact predictor</dd> <dt><a href='freediams' id='freediams'>freediams</a> (0.9.4-2)</dt> <dd lang='en'>pharmaceutical drug prescription and interaction manager</dd> <dt><a href='freemedforms-common-resources' id='freemedforms-common-resources'>freemedforms-common-resources</a> (0.9.4-2)</dt> <dd lang='en'>common data for the FreeMedForms project applications</dd> <dt><a href='freemedforms-emr' id='freemedforms-emr'>freemedforms-emr</a> (0.9.4-2)</dt> <dd lang='en'>electronic medical record manager</dd> <dt><a href='freemedforms-emr-resources' id='freemedforms-emr-resources'>freemedforms-emr-resources</a> (0.9.4-2)</dt> <dd lang='en'>data for the FreeMedForms EMR</dd> <dt><a href='freemedforms-freedata' id='freemedforms-freedata'>freemedforms-freedata</a> (0.9.4-2)</dt> <dd lang='en'>free extra-data for the FreeMedForms project</dd> <dt><a href='freemedforms-libs' id='freemedforms-libs'>freemedforms-libs</a> (0.9.4-2)</dt> <dd lang='en'>common libs for the FreeMedForms project</dd> <dt><a href='freemedforms-project' id='freemedforms-project'>freemedforms-project</a> (0.9.4-2)</dt> <dd lang='en'>set of medical applications for health professionals</dd> <dt><a href='freemedforms-theme' id='freemedforms-theme'>freemedforms-theme</a> (0.9.4-2)</dt> <dd lang='en'>theme for the FreeMedForms project</dd> <dt><a href='frog' id='frog'>frog</a> (0.15-1)</dt> <dd lang='en'>tagger and parser for natural languages (runtime)</dd> <dt><a href='frogdata' id='frogdata'>frogdata</a> (0.16-1)</dt> <dd lang='en'>Data files for Frog</dd> <dt><a href='fsa' id='fsa'>fsa</a> (1.15.9+dfsg-4)</dt> <dd lang='en'>Fast Statistical Alignment of protein, RNA or DNA sequences</dd> <dt><a href='fsl' id='fsl'>fsl</a> (5.0.8-6) [non-free]</dt> <dd lang='en'>transitional dummy package</dd> <dt><a href='fsl'>fsl</a></dt><dd>виртуальный пакет, предоставляемый <a href='../fsl-5.0-core'>fsl-5.0-core</a></dd> <dt><a href='fsl-5.0-core' id='fsl-5.0-core'>fsl-5.0-core</a> (5.0.8-6) [non-free]</dt> <dd lang='en'>analysis tools for FMRI, MRI and DTI brain imaging</dd> <dt><a href='fsl-core' id='fsl-core'>fsl-core</a> (5.0.8-6) [non-free]</dt> <dd lang='en'>metapackage for the latest version of FSL</dd> <dt><a href='fsm-lite' id='fsm-lite'>fsm-lite</a> (1.0-3)</dt> <dd lang='en'>frequency-based string mining (lite)</dd> <dt><a href='ftools-fv' id='ftools-fv'>ftools-fv</a> (5.5+dfsg-2)</dt> <dd lang='en'>Tool for viewing and editing FITS format files</dd> <dt><a href='ftools-pow' id='ftools-pow'>ftools-pow</a> (5.5+dfsg-2)</dt> <dd lang='en'>Curve plotting and image display interface tool</dd> <dt><a href='funtools' id='funtools'>funtools</a> (1.4.7-4)</dt> <dd lang='en'>Minimal buy-in FITS utility package</dd> <dt><a href='fw4spl' id='fw4spl'>fw4spl</a> (17.2.0-2)</dt> <dd lang='en'>FrameWork for Software Production Line</dd> <dt><a href='fxt-tools' id='fxt-tools'>fxt-tools</a> (0.3.8-2)</dt> <dd lang='en'>Multithreaded tracing library</dd> <dt><a href='g3data' id='g3data'>g3data</a> (1:1.5.3-2.1+b1)</dt> <dd>извлечение данных из отсканированных графов</dd> <dt><a href='gabedit' id='gabedit'>gabedit</a> (2.4.8-3+b2)</dt> <dd lang='en'>graphical user interface to Ab Initio packages</dd> <dt><a href='galileo' id='galileo'>galileo</a> (0.5.1-6)</dt> <dd lang='en'>Utility to securely synchronize a Fitbit device with the Fitbit web service</dd> <dt><a href='galileo-daemon' id='galileo-daemon'>galileo-daemon</a> (0.5.1-6)</dt> <dd lang='en'>Utility to securely synchronize a Fitbit device - daemon</dd> <dt><a href='gamgi' id='gamgi'>gamgi</a> (0.17.3-2)</dt> <dd lang='en'>General Atomistic Modelling Graphic Interface (GAMGI)</dd> <dt><a href='gamgi-data' id='gamgi-data'>gamgi-data</a> (0.17.3-2)</dt> <dd lang='en'>General Atomistic Modelling Graphic Interface (data)</dd> <dt><a href='garli' id='garli'>garli</a> (2.1-3)</dt> <dd lang='en'>phylogenetic analysis of molecular sequence data using maximum-likelihood</dd> <dt><a href='garli-examples' id='garli-examples'>garli-examples</a> (2.1-3)</dt> <dd lang='en'>phylogenetic analysis of molecular sequence data (examples)</dd> <dt><a href='garli-mpi' id='garli-mpi'>garli-mpi</a> (2.1-3)</dt> <dd lang='en'>phylogenetic analysis of molecular sequence data using maximum-likelihood (MPI)</dd> <dt><a href='garlic' id='garlic'>garlic</a> (1.6-3)</dt> <dd lang='en'>visualization program for biomolecules</dd> <dt><a href='gasic' id='gasic'>gasic</a> (0.0.r19-4)</dt> <dd lang='en'>genome abundance similarity correction</dd> <dt><a href='gatb-core' id='gatb-core'>gatb-core</a> (1.4.1+git20181225.44d5a44+dfsg-3)</dt> <dd lang='en'>Genome Analysis Toolbox with de-Bruijn graph</dd> <dt><a href='gatb-core-testdata' id='gatb-core-testdata'>gatb-core-testdata</a> (1.4.1+git20181225.44d5a44+dfsg-3)</dt> <dd lang='en'>Genome Analysis Toolbox with de-Bruijn graph (test data)</dd> <dt><a href='gausssum' id='gausssum'>gausssum</a> (3.0.2-1)</dt> <dd>разбирает и отображает вывод Gaussian, GAMESS, и т.п.</dd> <dt><a href='gazebo9' id='gazebo9'>gazebo9</a> (9.6.0-1+b11)</dt> <dd lang='en'>Open Source Robotics Simulator - Binaries</dd> <dt><a href='gazebo9-common' id='gazebo9-common'>gazebo9-common</a> (9.6.0-1)</dt> <dd lang='en'>Open Source Robotics Simulator - Shared files</dd> <dt><a href='gazebo9-plugin-base' id='gazebo9-plugin-base'>gazebo9-plugin-base</a> (9.6.0-1+b11)</dt> <dd lang='en'>Open Source Robotics Simulator - base plug-ins</dd> <dt><a href='gbrowse' id='gbrowse'>gbrowse</a> (2.56+dfsg-4)</dt> <dd lang='en'>GMOD Generic Genome Browser</dd> <dt><a href='gbrowse-calign' id='gbrowse-calign'>gbrowse-calign</a> (2.56+dfsg-4+b1)</dt> <dd lang='en'>CAlign helper</dd> <dt><a href='gbrowse-data' id='gbrowse-data'>gbrowse-data</a> (2.56+dfsg-4)</dt> <dd lang='en'>Sample data to use GBrowse</dd> <dt><a href='gbutils' id='gbutils'>gbutils</a> (5.7.1-1)</dt> <dd lang='en'>utilities for command line econometrics</dd> <dt><a href='gchempaint' id='gchempaint'>gchempaint</a> (0.14.17-1.1)</dt> <dd>двухмерный редактор химическиx элементов (GNOME2)</dd> <dt><a href='gcrystal' id='gcrystal'>gcrystal</a> (0.14.17-1.1)</dt> <dd>визуализатор кристаллических структур</dd> <dt><a href='gcu-bin' id='gcu-bin'>gcu-bin</a> (0.14.17-1.1)</dt> <dd lang='en'>GNOME chemistry utils (helper applications)</dd> <dt><a href='gcx' id='gcx'>gcx</a> (1.3-1.1+b2)</dt> <dd lang='en'>astronomical image processing and photometry gtk+ application</dd> <dt><a href='gdal-bin' id='gdal-bin'>gdal-bin</a> (2.4.0+dfsg-1+deb10u1) [security]</dt> <dd lang='en'>Geospatial Data Abstraction Library - Utility programs</dd> <dt><a href='gdal-data' id='gdal-data'>gdal-data</a> (2.4.0+dfsg-1+deb10u1) [security]</dt> <dd lang='en'>Geospatial Data Abstraction Library - Data files</dd> <dt><a href='gdis' id='gdis'>gdis</a> (0.90-5+b1)</dt> <dd lang='en'>molecular and crystal model viewer</dd> <dt><a href='gdis-data' id='gdis-data'>gdis-data</a> (0.90-5)</dt> <dd lang='en'>molecular and crystal model viewer (data files)</dd> <dt><a href='gdl-astrolib' id='gdl-astrolib'>gdl-astrolib</a> (2018.08.10+dfsg-1)</dt> <dd lang='en'>Low-level astronomy software for GDL</dd> <dt><a href='gdl-coyote' id='gdl-coyote'>gdl-coyote</a> (2019.01.29-1)</dt> <dd lang='en'>GDL library from D. Fannings IDL courses</dd> <dt><a href='gdl-mpfit' id='gdl-mpfit'>gdl-mpfit</a> (1.85+2017.01.03-3)</dt> <dd lang='en'>Robust non-linear least squares curve fitting for GDL</dd> <dt><a href='gdpc' id='gdpc'>gdpc</a> (2.2.5-9)</dt> <dd lang='en'>visualiser of molecular dynamic simulations</dd> <dt><a href='gdpc-examples' id='gdpc-examples'>gdpc-examples</a> (2.2.5-9)</dt> <dd lang='en'>example files for the gdpc program</dd> <dt><a href='geant321' id='geant321'>geant321</a> (1:3.21.14.dfsg-11)</dt> <dd lang='en'>[Physics] Particle detector description and simulation tool</dd> <dt><a href='geant321-data' id='geant321-data'>geant321-data</a> (1:3.21.14.dfsg-11)</dt> <dd lang='en'>[Physics] Data for GEANT 3.21 detector simulator</dd> <dt><a href='gelemental' id='gelemental'>gelemental</a> (1.2.0-12)</dt> <dd lang='en'>Periodic Table viewer</dd> <dt><a href='gemma' id='gemma'>gemma</a> (0.98.1+dfsg-1)</dt> <dd lang='en'>Genome-wide Efficient Mixed Model Association</dd> <dt><a href='gemma-doc' id='gemma-doc'>gemma-doc</a> (0.98.1+dfsg-1)</dt> <dd lang='en'>Example folder for GEMMA</dd> <dt><a href='genometester' id='genometester'>genometester</a> (4.0+git20180508.a9c14a6+dfsg-1)</dt> <dd lang='en'>toolkit for performing set operations on k-mer lists</dd> <dt><a href='genometools' id='genometools'>genometools</a> (1.5.10+ds-3)</dt> <dd lang='en'>versatile genome analysis toolkit</dd> <dt><a href='genometools-common' id='genometools-common'>genometools-common</a> (1.5.10+ds-3)</dt> <dd lang='en'>shared data files for GenomeTools</dd> <dt><a href='gentle' id='gentle'>gentle</a> (1.9+cvs20100605+dfsg1-7+b1)</dt> <dd lang='en'>suite to plan genetic cloning</dd> <dt><a href='geographiclib-tools' id='geographiclib-tools'>geographiclib-tools</a> (1.49-4)</dt> <dd lang='en'>C++ library to solve some geodesic problems -- tools</dd> <dt><a href='geotiff-bin' id='geotiff-bin'>geotiff-bin</a> (1.4.3-1)</dt> <dd lang='en'>GeoTIFF (geografic enabled TIFF) library -- tools</dd> <dt><a href='gerris' id='gerris'>gerris</a> (20131206+dfsg-18+b2)</dt> <dd lang='en'>Fluid Flow Solver</dd> <dt><a href='getdata' id='getdata'>getdata</a> (0.2-3)</dt> <dd lang='en'>management of external databases</dd> <dt><a href='gff2aplot' id='gff2aplot'>gff2aplot</a> (2.0-11)</dt> <dd lang='en'>pair-wise alignment-plots for genomic sequences in PostScript</dd> <dt><a href='gff2ps' id='gff2ps'>gff2ps</a> (0.98l-2)</dt> <dd lang='en'>produces PostScript graphical output from GFF-files</dd> <dt><a href='gfsview' id='gfsview'>gfsview</a> (20121130+dfsg-6)</dt> <dd lang='en'>graphical viewer for Gerris simulation files</dd> <dt><a href='gfsview-batch' id='gfsview-batch'>gfsview-batch</a> (20121130+dfsg-6)</dt> <dd lang='en'>batch-version of viewer for Gerris simulation files</dd> <dt><a href='ghkl' id='ghkl'>ghkl</a> (5.0.0.2456-1)</dt> <dd lang='en'>diffractometer computation control application</dd> <dt><a href='ghmm' id='ghmm'>ghmm</a> (0.9~rc3-2)</dt> <dd lang='en'>General Hidden-Markov-Model library - tools</dd> <dt><a href='giella-core' id='giella-core'>giella-core</a> (0.1.1~r129227+svn121148-2)</dt> <dd lang='en'>GTCORE files for building Giellatekno language packages</dd> <dt><a href='giella-sme' id='giella-sme'>giella-sme</a> (0.0.20150917~r121176-3)</dt> <dd lang='en'>Giellatekno single language data for North Saami</dd> <dt><a href='giella-sme-dev' id='giella-sme-dev'>giella-sme-dev</a> (0.0.20150917~r121176-3)</dt> <dd lang='en'>Giellatekno single language data for North Saami (dev extras)</dd> <dt><a href='giira' id='giira'>giira</a> (0.0.20140625-2)</dt> <dd lang='en'>RNA-Seq driven gene finding incorporating ambiguous reads</dd> <dt><a href='ginga' id='ginga'>ginga</a> (2.7.2-2)</dt> <dd lang='en'>Astronomical image viewer</dd> <dt><a href='ginkgocadx' id='ginkgocadx'>ginkgocadx</a> (3.8.8-1)</dt> <dd lang='en'>Medical Imaging Software and complete DICOM Viewer</dd> <dt><a href='glam2' id='glam2'>glam2</a> (1064-5)</dt> <dd lang='en'>gapped protein motifs from unaligned sequences</dd> <dt><a href='gliese' id='gliese'>gliese</a> (3.0.95-2) [non-free]</dt> <dd lang='en'>stellar data set from the Third Catalogue of Nearby Stars</dd> <dt><a href='glueviz' id='glueviz'>glueviz</a> (0.14.1+dfsg-1)</dt> <dd lang='en'>Linked data visualization</dd> <dt><a href='gmap' id='gmap'>gmap</a> (2019-01-24-1) [non-free]</dt> <dd lang='en'>spliced and SNP-tolerant alignment for mRNA and short reads</dd> <dt><a href='gmt' id='gmt'>gmt</a> (5.4.5+dfsg-2)</dt> <dd lang='en'>Generic Mapping Tools</dd> <dt><a href='gmt-common' id='gmt-common'>gmt-common</a> (5.4.5+dfsg-2)</dt> <dd lang='en'>Generic Mapping Tools - Architecture-independent files</dd> <dt><a href='gmt-dcw' id='gmt-dcw'>gmt-dcw</a> (1.1.4-2)</dt> <dd lang='en'>Digital Chart of the World (DCW) for GMT</dd> <dt><a href='gmt-gshhg' id='gmt-gshhg'>gmt-gshhg</a> (2.3.7-4)</dt> <dd lang='en'>Global Self-consistent Hierarchical High-resolution Geography (GSHHG)</dd> <dt><a href='gmt-gshhg-full' id='gmt-gshhg-full'>gmt-gshhg-full</a> (2.3.7-4)</dt> <dd lang='en'>Full resolution coastlines for the Generic Mapping Tools</dd> <dt><a href='gmt-gshhg-high' id='gmt-gshhg-high'>gmt-gshhg-high</a> (2.3.7-4)</dt> <dd lang='en'>High resolution coastlines for the Generic Mapping Tools</dd> <dt><a href='gmt-gshhg-low' id='gmt-gshhg-low'>gmt-gshhg-low</a> (2.3.7-4)</dt> <dd lang='en'>Low resolution coastlines for the Generic Mapping Tools</dd> <dt><a href='gnuastro' id='gnuastro'>gnuastro</a> (0.8-1)</dt> <dd lang='en'>GNU Astronomy Utilities programs</dd> <dt><a href='gpaw' id='gpaw'>gpaw</a> (1.5.1-1)</dt> <dd lang='en'>DFT and beyond within the projector-augmented wave method</dd> <dt><a href='gpaw-data' id='gpaw-data'>gpaw-data</a> (0.9.20000-2)</dt> <dd lang='en'>gpaw datasets/setups</dd> <dt><a href='gperiodic' id='gperiodic'>gperiodic</a> (3.0.3-1)</dt> <dd>периодическая таблица Менделеева</dd> <dt><a href='gpx' id='gpx'>gpx</a> (2.5.2-3)</dt> <dd lang='en'>Gcode to x3g conversion post processor</dd> <dt><a href='gpx2shp' id='gpx2shp'>gpx2shp</a> (0.71.0-7)</dt> <dd lang='en'>convert GPS or GPX file to ESRI Shape file</dd> <dt><a href='gr-fcdproplus' id='gr-fcdproplus'>gr-fcdproplus</a> (3.7.25.4b6464b-5+b3)</dt> <dd lang='en'>Funcube Dongle Pro Plus controller for GNU Radio</dd> <dt><a href='grabix' id='grabix'>grabix</a> (0.1.7-1)</dt> <dd lang='en'>wee tool for random access into BGZF files</dd> <dt><a href='graphlan' id='graphlan'>graphlan</a> (1.1.3-1)</dt> <dd lang='en'>circular representations of taxonomic and phylogenetic trees</dd> <dt><a href='grass' id='grass'>grass</a> (7.6.0-1)</dt> <dd lang='en'>Geographic Resources Analysis Support System (GRASS GIS)</dd> <dt><a href='grass-core' id='grass-core'>grass-core</a> (7.6.0-1)</dt> <dd lang='en'>GRASS GIS core components</dd> <dt><a href='grass-gui' id='grass-gui'>grass-gui</a> (7.6.0-1)</dt> <dd lang='en'>GRASS GIS graphical user interfaces</dd> <dt><a href='gravit' id='gravit'>gravit</a> (0.5.1+dfsg-3)</dt> <dd lang='en'>visually stunning gravity simulator</dd> <dt><a href='gravit-data' id='gravit-data'>gravit-data</a> (0.5.1+dfsg-3)</dt> <dd lang='en'>data files for Gravit</dd> <dt><a href='gri' id='gri'>gri</a> (2.12.26-1+b1)</dt> <dd lang='en'>a language for scientific illustration</dd> <dt><a href='grinder' id='grinder'>grinder</a> (0.5.4-5)</dt> <dd lang='en'>Versatile omics shotgun and amplicon sequencing read simulator</dd> <dt><a href='gromacs' id='gromacs'>gromacs</a> (2019.1-1)</dt> <dd lang='en'>Molecular dynamics simulator, with building and analysis tools</dd> <dt><a href='gromacs-data' id='gromacs-data'>gromacs-data</a> (2019.1-1)</dt> <dd lang='en'>GROMACS molecular dynamics sim, data and documentation</dd> <dt><a href='gromacs-mpich' id='gromacs-mpich'>gromacs-mpich</a> (2019.1-1)</dt> <dd lang='en'>Molecular dynamics sim, binaries for MPICH parallelization</dd> <dt><a href='gromacs-openmpi' id='gromacs-openmpi'>gromacs-openmpi</a> (2019.1-1)</dt> <dd lang='en'>Molecular dynamics sim, binaries for OpenMPI parallelization</dd> <dt><a href='gubbins' id='gubbins'>gubbins</a> (2.3.4-1)</dt> <dd lang='en'>phylogenetic analysis of genome sequences</dd> <dt><a href='gvb' id='gvb'>gvb</a> (1.4-1)</dt> <dd lang='en'>visual simulator of 1 and 2-dimensional vibrations</dd> <dt><a href='gwama' id='gwama'>gwama</a> (2.2.2+dfsg-2)</dt> <dd lang='en'>Genome-Wide Association Meta Analysis</dd> <dt><a href='gwyddion' id='gwyddion'>gwyddion</a> (2.52-1)</dt> <dd lang='en'>Scanning Probe Microscopy visualization and analysis tool</dd> <dt><a href='gwyddion-common' id='gwyddion-common'>gwyddion-common</a> (2.52-1)</dt> <dd lang='en'>architecture-independent files for Gwyddion SPM analysis tool</dd> <dt><a href='gwyddion-plugins' id='gwyddion-plugins'>gwyddion-plugins</a> (2.52-1)</dt> <dd lang='en'>plugins for Gwyddion SPM analysis tool</dd> <dt><a href='gyoto' id='gyoto'>gyoto</a> (1.3.1-1)</dt> <dd lang='en'>General relativistic geodesic integration and ray-tracing</dd> <dt><a href='gyoto-bin' id='gyoto-bin'>gyoto-bin</a> (1.3.1-1)</dt> <dd lang='en'>General relativistic ray-tracing command-line interface</dd> <dt><a href='h5utils' id='h5utils'>h5utils</a> (1.13.1-3+b1)</dt> <dd lang='en'>HDF5 files visualization tools</dd> <dt><a href='harminv' id='harminv'>harminv</a> (1.4.1-2)</dt> <dd lang='en'>extraction of complex frequencies and amplitudes from time series</dd> <dt><a href='harvest-tools' id='harvest-tools'>harvest-tools</a> (1.3-4)</dt> <dd lang='en'>archiving and postprocessing for reference-compressed genomic multi-alignments</dd> <dt><a href='hdf-compass' id='hdf-compass'>hdf-compass</a> (0.6.0-1)</dt> <dd lang='en'>viewer for HDF5 and related formats</dd> <dt><a href='hdf5-helpers' id='hdf5-helpers'>hdf5-helpers</a> (1.10.4+repack-10+deb10u1) [security]</dt> <dd lang='en'>Hierarchical Data Format 5 (HDF5) - Helper tools</dd> <dt><a href='hdf5-tools' id='hdf5-tools'>hdf5-tools</a> (1.10.4+repack-10+deb10u1) [security]</dt> <dd lang='en'>Hierarchical Data Format 5 (HDF5) - Runtime tools</dd> <dt><a href='herisvm' id='herisvm'>herisvm</a> (0.8.2-1)</dt> <dd lang='en'>machine learning tools for classification algorithms</dd> <dt><a href='hfst' id='hfst'>hfst</a> (3.15.0-1.1~deb10u1)</dt> <dd lang='en'>Helsinki Finite-State Transducer Technology</dd> <dt><a href='hfst-ospell' id='hfst-ospell'>hfst-ospell</a> (0.5.0-2)</dt> <dd lang='en'>Spell checker library and tool based on HFST</dd> <dt><a href='hhsuite' id='hhsuite'>hhsuite</a> (3.0~beta3+dfsg-3)</dt> <dd lang='en'>sensitive protein sequence searching based on HMM-HMM alignment</dd> <dt><a href='hhsuite-data' id='hhsuite-data'>hhsuite-data</a> (3.0~beta3+dfsg-3)</dt> <dd lang='en'>sensitive protein sequence searching based on HMM-HMM alignment (data)</dd> <dt><a href='hilive' id='hilive'>hilive</a> (1.1-2)</dt> <dd lang='en'>realtime alignment of Illumina reads</dd> <dt><a href='hinge' id='hinge'>hinge</a> (0.5.0-4)</dt> <dd lang='en'>long read genome assembler based on hinging</dd> <dt><a href='hisat2' id='hisat2'>hisat2</a> (2.1.0-2)</dt> <dd lang='en'>graph-based alignment of short nucleotide reads to many genomes</dd> <dt><a href='hmmer' id='hmmer'>hmmer</a> (3.2.1+dfsg-1)</dt> <dd lang='en'>profile hidden Markov models for protein sequence analysis</dd> <dt><a href='hmmer2' id='hmmer2'>hmmer2</a> (2.3.2+dfsg-6)</dt> <dd lang='en'>profile hidden Markov models for protein sequence analysis</dd> <dt><a href='hmmer2-pvm' id='hmmer2-pvm'>hmmer2-pvm</a> (2.3.2+dfsg-6)</dt> <dd lang='en'>HMMER programs with PVM (Parallel Virtual Machine) support</dd> <dt><a href='hodie' id='hodie'>hodie</a> (1.5.0-1)</dt> <dd lang='en'>prints the date in Latin</dd> <dt><a href='horae' id='horae'>horae</a> (071~svn537-2.1) [contrib]</dt> <dd lang='en'>interactive graphical processing and analysis of EXAFS data</dd> <dt><a href='hpcc' id='hpcc'>hpcc</a> (1.5.0-1+b1)</dt> <dd lang='en'>HPC Challenge benchmark</dd> <dt><a href='htcondor' id='htcondor'>htcondor</a> (8.6.8~dfsg.1-2+deb10u1)</dt> <dd lang='en'>distributed workload management system</dd> <dt><a href='hyphy-common' id='hyphy-common'>hyphy-common</a> (2.3.14+dfsg-1)</dt> <dd lang='en'>Hypothesis testing using Phylogenies (common files)</dd> <dt><a href='hyphy-mpi' id='hyphy-mpi'>hyphy-mpi</a> (2.3.14+dfsg-1)</dt> <dd lang='en'>Hypothesis testing using Phylogenies (MPI version)</dd> <dt><a href='hyphy-pt' id='hyphy-pt'>hyphy-pt</a> (2.3.14+dfsg-1)</dt> <dd lang='en'>Hypothesis testing using Phylogenies (pthreads version)</dd> <dt><a href='idba' id='idba'>idba</a> (1.1.3-3)</dt> <dd lang='en'>iterative De Bruijn Graph short read assemblers</dd> <dt><a href='ifeffit' id='ifeffit'>ifeffit</a> (2:1.2.11d-10.2+b3) [contrib]</dt> <dd lang='en'>Interactive XAFS analysis program</dd> <dt><a href='ifrit' id='ifrit'>ifrit</a> (4.1.2-6+b1)</dt> <dd lang='en'>powerful tool for visualizing 3-dimensional data sets</dd> <dt><a href='igor' id='igor'>igor</a> (1.3.0+dfsg-1)</dt> <dd lang='en'>infers V(D)J recombination processes from sequencing data</dd> <dt><a href='imagej' id='imagej'>imagej</a> (1.52j-1)</dt> <dd lang='en'>Image processing program with a focus on microscopy images</dd> <dt><a href='imagevis3d' id='imagevis3d'>imagevis3d</a> (3.1.0-7+b2)</dt> <dd lang='en'>desktop volume rendering application for large data</dd> <dt><a href='imview' id='imview'>imview</a> (1.1.9h-1)</dt> <dd>Программа для просмотра и анализа изображений</dd> <dt><a href='indelible' id='indelible'>indelible</a> (1.03-4)</dt> <dd lang='en'>powerful and flexible simulator of biological evolution</dd> <dt><a href='indigo-utils' id='indigo-utils'>indigo-utils</a> (1.2.3-1)</dt> <dd lang='en'>Organic Chemistry Toolkit Utilities</dd> <dt><a href='infernal' id='infernal'>infernal</a> (1.1.2-2)</dt> <dd lang='en'>inference of RNA secondary structural alignments</dd> <dt><a href='inhomog' id='inhomog'>inhomog</a> (0.1.9.2-1)</dt> <dd lang='en'>kinematical backreaction and average scale factor evolution</dd> <dt><a href='ipig' id='ipig'>ipig</a> (0.0.r5-3)</dt> <dd lang='en'>integrating PSMs into genome browser visualisations</dd> <dt><a href='iqtree' id='iqtree'>iqtree</a> (1.6.9+dfsg-1)</dt> <dd lang='en'>efficient phylogenetic software by maximum likelihood</dd> <dt><a href='iraf' id='iraf'>iraf</a> (2.16.1+2018.11.01-2)</dt> <dd lang='en'>Image Reduction and Analysis Facility</dd> <dt><a href='iraf-dev' id='iraf-dev'>iraf-dev</a> (2.16.1+2018.11.01-2)</dt> <dd lang='en'>Image Reduction and Analysis Facility (development files)</dd> <dt><a href='iraf-fitsutil' id='iraf-fitsutil'>iraf-fitsutil</a> (2018.07.06-3+b1)</dt> <dd lang='en'>FITS utilities for IRAF</dd> <dt><a href='iraf-mscred' id='iraf-mscred'>iraf-mscred</a> (5.05+2018.07.09-1+b1)</dt> <dd lang='en'>CCD mosaic reduction package for IRAF</dd> <dt><a href='iraf-noao' id='iraf-noao'>iraf-noao</a> (2.16.1+2018.11.01-2)</dt> <dd lang='en'>IRAF NOAO data reduction package</dd> <dt><a href='iraf-noao-dev' id='iraf-noao-dev'>iraf-noao-dev</a> (2.16.1+2018.11.01-2)</dt> <dd lang='en'>IRAF NOAO data reduction package (development files)</dd> <dt><a href='iraf-rvsao' id='iraf-rvsao'>iraf-rvsao</a> (2.8.3-1+b1)</dt> <dd lang='en'>IRAF package to obtain radial velocities from spectra</dd> <dt><a href='iraf-sptable' id='iraf-sptable'>iraf-sptable</a> (1.0~pre20180612-1+b1)</dt> <dd lang='en'>IRAF package for Tabular Spectra</dd> <dt><a href='iraf-wcstools' id='iraf-wcstools'>iraf-wcstools</a> (3.9.5-3)</dt> <dd lang='en'>Handle the WCS of a FITS image (IRAF package)</dd> <dt><a href='irstlm' id='irstlm'>irstlm</a> (6.00.05-2)</dt> <dd lang='en'>IRST Language Modeling Toolkit</dd> <dt><a href='ismrmrd-schema' id='ismrmrd-schema'>ismrmrd-schema</a> (1.4.0-1)</dt> <dd lang='en'>schema for ISMRMRD</dd> <dt><a href='ismrmrd-tools' id='ismrmrd-tools'>ismrmrd-tools</a> (1.4.0-1)</dt> <dd lang='en'>command-line tools for ISMRMRD</dd> <dt><a href='itksnap' id='itksnap'>itksnap</a> (3.6.0-3)</dt> <dd>полуавтоматическая сегментация структур в 3D-изображениях</dd> <dt><a href='iva' id='iva'>iva</a> (1.0.9+ds-6)</dt> <dd lang='en'>iterative virus sequence assembler</dd> <dt><a href='jaligner' id='jaligner'>jaligner</a> (1.0+dfsg-6)</dt> <dd lang='en'>Smith-Waterman algorithm with Gotoh's improvement</dd> <dt><a href='jblas' id='jblas'>jblas</a> (1.2.4-2)</dt> <dd lang='en'>fast linear algebra library for Java</dd> <dt><a href='jellyfish' id='jellyfish'>jellyfish</a> (2.2.10-2)</dt> <dd lang='en'>count k-mers in DNA sequences</dd> <dt><a href='jellyfish-examples' id='jellyfish-examples'>jellyfish-examples</a> (2.2.10-2)</dt> <dd lang='en'>count k-mers in DNA sequences (examples for testing)</dd> <dt><a href='jellyfish1' id='jellyfish1'>jellyfish1</a> (1.1.11-4)</dt> <dd lang='en'>count k-mers in DNA sequences</dd> <dt><a href='jemboss' id='jemboss'>jemboss</a> (6.6.0+dfsg-7)</dt> <dd lang='en'>graphical user interface to EMBOSS</dd> <dt><a href='jmodeltest' id='jmodeltest'>jmodeltest</a> (2.1.10+dfsg-7)</dt> <dd lang='en'>HPC selection of models of nucleotide substitution</dd> <dt><a href='jmol' id='jmol'>jmol</a> (14.6.4+2016.11.05+dfsg1-4)</dt> <dd>программа для просмотра молекулярных структур</dd> <dt><a href='jsamp' id='jsamp'>jsamp</a> (1.3.5-1)</dt> <dd lang='en'>Java Simple Application Messaging Protocol tool for VO</dd> <dt><a href='jube' id='jube'>jube</a> (2.2.2-1)</dt> <dd lang='en'>JUBE Benchmarking Environment</dd> <dt><a href='julia' id='julia'>julia</a> (1.0.3+dfsg-4)</dt> <dd lang='en'>high-performance programming language for technical computing</dd> <dt><a href='julia-common' id='julia-common'>julia-common</a> (1.0.3+dfsg-4)</dt> <dd lang='en'>high-performance programming language for technical computing (common files)</dd> <dt><a href='jupyter-notebook' id='jupyter-notebook'>jupyter-notebook</a> (5.7.8-1)</dt> <dd lang='en'>Jupyter interactive notebook</dd> <dt><a href='kalign' id='kalign'>kalign</a> (1:2.03+20110620-5)</dt> <dd lang='en'>Global and progressive multiple sequence alignment</dd> <dt><a href='kalzium' id='kalzium'>kalzium</a> (4:17.08.3-1+b1)</dt> <dd>периодическая таблица и химические инструменты</dd> <dt><a href='kalzium-data' id='kalzium-data'>kalzium-data</a> (4:17.08.3-1)</dt> <dd lang='en'>data files for Kalzium</dd> <dt><a href='khmer' id='khmer'>khmer</a> (2.1.2+dfsg-6)</dt> <dd lang='en'>in-memory DNA sequence kmer counting, filtering & graph traversal</dd> <dt><a href='khmer-common' id='khmer-common'>khmer-common</a> (2.1.2+dfsg-6)</dt> <dd lang='en'>common files for the khmer project tools</dd> <dt><a href='kineticstools' id='kineticstools'>kineticstools</a> (0.6.1+git20180425.27a1878-2)</dt> <dd lang='en'>detection of DNA modifications</dd> <dt><a href='kineticstools-data' id='kineticstools-data'>kineticstools-data</a> (0.6.1+git20180425.27a1878-2)</dt> <dd lang='en'>detection of DNA modifications -- data files</dd> <dt><a href='king-probe' id='king-probe'>king-probe</a> (2.16.160404+git20180613.a09b012-1)</dt> <dd lang='en'>Evaluate and visualize protein interatomic packing</dd> <dt><a href='kissplice' id='kissplice'>kissplice</a> (2.4.0-p1-4)</dt> <dd lang='en'>Detection of various kinds of polymorphisms in RNA-seq data</dd> <dt><a href='klustakwik' id='klustakwik'>klustakwik</a> (2.0.1-1+b2)</dt> <dd lang='en'>automatic sorting of the samples (spikes) into clusters</dd> <dt><a href='kmc' id='kmc'>kmc</a> (2.3+dfsg-7)</dt> <dd lang='en'>count kmers in genomic sequences</dd> <dt><a href='kmer' id='kmer'>kmer</a> (0~20150903+r2013-6)</dt> <dd lang='en'>suite of tools for DNA sequence analysis</dd> <dt><a href='kmer-examples' id='kmer-examples'>kmer-examples</a> (0~20150903+r2013-6)</dt> <dd lang='en'>sample data for kmer suite of tools for DNA sequence analysis</dd> <dt><a href='konclude' id='konclude'>konclude</a> (0.6.2~dfsg-6)</dt> <dd lang='en'>tableau-based description logic reasoner for the semantic web</dd> <dt><a href='kraken' id='kraken'>kraken</a> (1.1-3)</dt> <dd lang='en'>assigning taxonomic labels to short DNA sequences</dd> <dt><a href='kst' id='kst'>kst</a> (2.0.8-3+b1)</dt> <dd lang='en'>scientific data plotting tool</dd> <dt><a href='kstars' id='kstars'>kstars</a> (5:3.0.0-1)</dt> <dd>настольный планетарий, планирование наблюдений и управление телескопом</dd> <dt><a href='kstars-data' id='kstars-data'>kstars-data</a> (5:3.0.0-1)</dt> <dd lang='en'>data files for KStars desktop planetarium</dd> <dt><a href='kstars-data-extra-tycho2' id='kstars-data-extra-tycho2'>kstars-data-extra-tycho2</a> (1.1r1-9.1) [non-free]</dt> <dd lang='en'>Tycho-2 star catalog for KStars</dd> <dt><a href='kxterm' id='kxterm'>kxterm</a> (20061220+dfsg3-4.4)</dt> <dd>набор инструментов для анализа данных CERNLIB — эмулятор терминала KUIP</dd> <dt><a href='lagan' id='lagan'>lagan</a> (2.0-3)</dt> <dd lang='en'>highly parametrizable pairwise global genome sequence aligner</dd> <dt><a href='lamarc' id='lamarc'>lamarc</a> (2.1.10.1+dfsg-3)</dt> <dd lang='en'>Likelihood Analysis with Metropolis Algorithm using Random Coalescence</dd> <dt><a href='lambda-align' id='lambda-align'>lambda-align</a> (1.0.3-5)</dt> <dd lang='en'>Local Aligner for Massive Biological DatA</dd> <dt><a href='lambda-align2' id='lambda-align2'>lambda-align2</a> (2.0.0-6)</dt> <dd lang='en'>Local Aligner for Massive Biological DatA - v2</dd> <dt><a href='lammps' id='lammps'>lammps</a> (0~20181211.gitad1b1897d+dfsg1-2)</dt> <dd lang='en'>Molecular Dynamics Simulator</dd> <dt><a href='last-align' id='last-align'>last-align</a> (963-2)</dt> <dd lang='en'>genome-scale comparison of biological sequences</dd> <dt><a href='lbt' id='lbt'>lbt</a> (1.2.2-6)</dt> <dd lang='en'>converts from LTL formulas to Büchi automata</dd> <dt><a href='leaff' id='leaff'>leaff</a> (0~20150903+r2013-6)</dt> <dd lang='en'>biological sequence library utilities and applications</dd> <dt><a href='lefse' id='lefse'>lefse</a> (1.0.8-2)</dt> <dd lang='en'>determine features of organisms, clades, taxonomic units, genes</dd> <dt><a href='libadios-bin' id='libadios-bin'>libadios-bin</a> (1.13.1-16)</dt> <dd lang='en'>ADIOS Adaptable IO system for simulations - binaries</dd> <dt><a href='libadios-examples' id='libadios-examples'>libadios-examples</a> (1.13.1-16)</dt> <dd lang='en'>Examples for the ADIOS Adaptable IO system</dd> <dt><a href='libball1.5-data' id='libball1.5-data'>libball1.5-data</a> (1.5.0+git20180813.37fc53c-3)</dt> <dd lang='en'>Biochemical Algorithms Library (data files)</dd> <dt><a href='libbio-tools-phylo-paml-perl' id='libbio-tools-phylo-paml-perl'>libbio-tools-phylo-paml-perl</a> (1.7.3-2)</dt> <dd lang='en'>Bioperl interface to the PAML suite</dd> <dt><a href='libbio-tools-run-alignment-clustalw-perl' id='libbio-tools-run-alignment-clustalw-perl'>libbio-tools-run-alignment-clustalw-perl</a> (1.7.4-1)</dt> <dd lang='en'>Bioperl interface to Clustal W</dd> <dt><a href='libbio-tools-run-alignment-tcoffee-perl' id='libbio-tools-run-alignment-tcoffee-perl'>libbio-tools-run-alignment-tcoffee-perl</a> (1.7.4-1)</dt> <dd lang='en'>Bioperl interface to T-Coffee</dd> <dt><a href='libcg3-1' id='libcg3-1'>libcg3-1</a> (1.1.7-1+b1)</dt> <dd lang='en'>Runtime for CG-3</dd> <dt><a href='libeccodes-data' id='libeccodes-data'>libeccodes-data</a> (2.12.0-1)</dt> <dd lang='en'>GRIB and BUFR enecoding/encoding software library - data</dd> <dt><a href='libgeotiff-epsg' id='libgeotiff-epsg'>libgeotiff-epsg</a> (1.4.3-1) [non-free]</dt> <dd lang='en'>GeoTIFF library -- EPSG Geodetic Parameter Dataset</dd> <dt><a href='libghemical-data' id='libghemical-data'>libghemical-data</a> (3.0.0-4.2)</dt> <dd lang='en'>Molecular Modelling Library (data files)</dd> <dt><a href='libgnuradio-fcdproplus3.7.11' id='libgnuradio-fcdproplus3.7.11'>libgnuradio-fcdproplus3.7.11</a> (3.7.25.4b6464b-5+b3)</dt> <dd lang='en'>Funcube Dongle Pro Plus controller for GNU Radio (runtime)</dd> <dt><a href='libgtkdatabox0-glade' id='libgtkdatabox0-glade'>libgtkdatabox0-glade</a> (1:0.9.3.1-1)</dt> <dd lang='en'>Gtk+ library to display large amounts of numerical data (glade API)</dd> <dt><a href='libgtkdatabox0-libglade' id='libgtkdatabox0-libglade'>libgtkdatabox0-libglade</a> (1:0.9.3.1-1)</dt> <dd lang='en'>Gtk+ library to display large amounts of numerical data (glade lib)</dd> <dt><a href='libhdf5-jni' id='libhdf5-jni'>libhdf5-jni</a> (1.10.4+repack-10+deb10u1) [security]</dt> <dd lang='en'>native library used by libhdf5-java</dd> <dt><a href='liblas-bin' id='liblas-bin'>liblas-bin</a> (1.8.1-10)</dt> <dd lang='en'>ASPRS LiDAR data translation toolset</dd> <dt><a href='liblemon-utils' id='liblemon-utils'>liblemon-utils</a> (1.3.1+dfsg-2)</dt> <dd lang='en'>Library for Efficient Modeling and Optimization in Networks (utilities)</dd> <dt><a href='liblinear-tools' id='liblinear-tools'>liblinear-tools</a> (2.1.0+dfsg-4)</dt> <dd lang='en'>Standalone applications for LIBLINEAR</dd> <dt><a href='libmstoolkit-tools' id='libmstoolkit-tools'>libmstoolkit-tools</a> (82-6)</dt> <dd lang='en'>libraries for manipulating mass spectrometry data - tools</dd> <dt><a href='libncarg-bin' id='libncarg-bin'>libncarg-bin</a> (6.5.0-2)</dt> <dd lang='en'>NCAR command-language library - development tools</dd> <dt><a href='libncarg-data' id='libncarg-data'>libncarg-data</a> (6.5.0-2)</dt> <dd lang='en'>NCAR command-language library - Data</dd> <dt><a href='libngram-tools' id='libngram-tools'>libngram-tools</a> (1.3.2-3)</dt> <dd lang='en'>OpenGRM n-gram Language Modeling toolkit</dd> <dt><a href='libocas-tools' id='libocas-tools'>libocas-tools</a> (0.97+dfsg-5)</dt> <dd lang='en'>Standalone applications implementing the OCAS solver</dd> <dt><a href='libotb' id='libotb'>libotb</a> (6.6.1+dfsg-1+b1)</dt> <dd lang='en'>ORFEO Toolbox library metapackage</dd> <dt><a href='libotb-apps' id='libotb-apps'>libotb-apps</a> (6.6.1+dfsg-1+b1)</dt> <dd lang='en'>Plugins for ORFEO Toolbox applications</dd> <dt><a href='libpluto-jpl-eph-dev' id='libpluto-jpl-eph-dev'>libpluto-jpl-eph-dev</a> (0.0~git20180228-1.1)</dt> <dd lang='en'>development files to interact with JPL ephemeres data</dd> <dt><a href='libpluto-lunar-dev' id='libpluto-lunar-dev'>libpluto-lunar-dev</a> (0.0~git20180825.e34c1d1-1)</dt> <dd lang='en'>development files for astronomical Lunar library</dd> <dt><a href='libpwiz-tools' id='libpwiz-tools'>libpwiz-tools</a> (3.0.18342-2)</dt> <dd lang='en'>ProteoWizard command line tools</dd> <dt><a href='libqgis-customwidgets' id='libqgis-customwidgets'>libqgis-customwidgets</a> (2.18.28+dfsg-2)</dt> <dd lang='en'>QGIS custom widgets for Qt Designer</dd> <dt><a href='libsilo-bin' id='libsilo-bin'>libsilo-bin</a> (4.10.2.real-5+b1)</dt> <dd lang='en'>Utilities to manipulate libsilo files</dd> <dt><a href='libssm-bin' id='libssm-bin'>libssm-bin</a> (1.4.0-1)</dt> <dd lang='en'>macromolecular superposition library - binaries</dd> <dt><a href='libvcflib-tools' id='libvcflib-tools'>libvcflib-tools</a> (1.0.0~rc2+dfsg-2)</dt> <dd lang='en'>C++ library for parsing and manipulating VCF files (tools)</dd> <dt><a href='libxy-bin' id='libxy-bin'>libxy-bin</a> (1.3-1.1+b1)</dt> <dd lang='en'>xylib - utilities</dd> <dt><a href='libyade' id='libyade'>libyade</a> (2019.01a-2)</dt> <dd lang='en'>Platform for discrete element modeling. Libraries</dd> <dt><a href='liggghts' id='liggghts'>liggghts</a> (3.8.0+repack1-4)</dt> <dd lang='en'>Open Source DEM Particle Simulation Software.</dd> <dt><a href='limereg' id='limereg'>limereg</a> (1.4.1-4+b1)</dt> <dd lang='en'>Lightweight Image Registration</dd> <dt><a href='linguider' id='linguider'>linguider</a> (4.1.1-1)</dt> <dd lang='en'>Astronomical autoguiding program for Linux</dd> <dt><a href='litl-tools' id='litl-tools'>litl-tools</a> (0.1.9-4)</dt> <dd lang='en'>Lightweight Trace Library - tools</dd> <dt><a href='logcentral' id='logcentral'>logcentral</a> (2.7-1.1+b2)</dt> <dd lang='en'>Logging service for distributed applications</dd> <dt><a href='logcentral-tools' id='logcentral-tools'>logcentral-tools</a> (2.7-1.1+b2)</dt> <dd lang='en'>Logging service for distributed applications</dd> <dt><a href='logol' id='logol'>logol</a> (1.7.9-1)</dt> <dd lang='en'>Pattern matching tool using Logol language</dd> <dt><a href='logol-bin' id='logol-bin'>logol-bin</a> (1.7.9-1)</dt> <dd lang='en'>Pattern matching tool using Logol language</dd> <dt><a href='loki' id='loki'>loki</a> (2.4.7.4-8)</dt> <dd lang='en'>MCMC linkage analysis on general pedigrees</dd> <dt><a href='looptools' id='looptools'>looptools</a> (2.8-1+b3)</dt> <dd lang='en'>Integral Evaluator of One-loop Feynman Diagram</dd> <dt><a href='lorene' id='lorene'>lorene</a> (0.0.0~cvs20161116+dfsg-1)</dt> <dd lang='en'>framework for numerical relativity</dd> <dt><a href='lorene-codes-src' id='lorene-codes-src'>lorene-codes-src</a> (0.0.0~cvs20161116+dfsg-1)</dt> <dd lang='en'>source files of LORENE-based codes</dd> <dt><a href='ltrsift' id='ltrsift'>ltrsift</a> (1.0.2-8)</dt> <dd lang='en'>postprocessing and classification of LTR retrotransposons</dd> <dt><a href='lttoolbox-dev' id='lttoolbox-dev'>lttoolbox-dev</a> (3.5.0-3)</dt> <dd lang='en'>Development tools and library for lttoolbox</dd> <dt><a href='lucy' id='lucy'>lucy</a> (1.20-1)</dt> <dd lang='en'>DNA sequence quality and vector trimming tool</dd> <dt><a href='lutefisk' id='lutefisk'>lutefisk</a> (1.0.7+dfsg-4+b1)</dt> <dd lang='en'>de novo interpretation of peptide CID spectra</dd> <dt><a href='lxi-tools' id='lxi-tools'>lxi-tools</a> (1.21-1)</dt> <dd lang='en'>LAN eXtensions for Instrumentation (LXI) software interface</dd> <dt><a href='macs' id='macs'>macs</a> (2.1.2.1-1)</dt> <dd lang='en'>Model-based Analysis of ChIP-Seq on short reads sequencers</dd> <dt><a href='macsyfinder' id='macsyfinder'>macsyfinder</a> (1.0.5-2)</dt> <dd lang='en'>detection of macromolecular systems in protein datasets</dd> <dt><a href='maffilter' id='maffilter'>maffilter</a> (1.3.1+dfsg-1+b1)</dt> <dd lang='en'>process genome alignment in the Multiple Alignment Format</dd> <dt><a href='maffilter-examples' id='maffilter-examples'>maffilter-examples</a> (1.3.1+dfsg-1)</dt> <dd lang='en'>process genome alignment in the Multiple Alignment Format (example data)</dd> <dt><a href='mafft' id='mafft'>mafft</a> (7.407-2)</dt> <dd lang='en'>Multiple alignment program for amino acid or nucleotide sequences</dd> <dt><a href='mapdamage' id='mapdamage'>mapdamage</a> (2.0.9+dfsg-1)</dt> <dd lang='en'>tracking and quantifying damage patterns in ancient DNA sequences</dd> <dt><a href='mapsembler2' id='mapsembler2'>mapsembler2</a> (2.2.4+dfsg-3+b1)</dt> <dd lang='en'>bioinformatics targeted assembly software</dd> <dt><a href='maq' id='maq'>maq</a> (0.7.1-8)</dt> <dd lang='en'>maps short fixed-length polymorphic DNA sequence reads to reference sequences</dd> <dt><a href='maqview' id='maqview'>maqview</a> (0.2.5-9)</dt> <dd lang='en'>graphical read alignment viewer for short gene sequences</dd> <dt><a href='mash' id='mash'>mash</a> (2.1+dfsg-2)</dt> <dd lang='en'>fast genome and metagenome distance estimation using MinHash</dd> <dt><a href='matlab-gdf' id='matlab-gdf'>matlab-gdf</a> (0.1.2-2.1) [contrib]</dt> <dd lang='en'>IO library for the GDF -- Matlab interface</dd> <dt><a href='maude' id='maude'>maude</a> (2.7-2+b2)</dt> <dd lang='en'>high-performance logical framework</dd> <dt><a href='mauve-aligner' id='mauve-aligner'>mauve-aligner</a> (2.4.0+4736-1)</dt> <dd lang='en'>multiple genome alignment</dd> <dt><a href='mayavi2' id='mayavi2'>mayavi2</a> (4.5.0-1)</dt> <dd lang='en'>scientific visualization package for 2-D and 3-D data</dd> <dt><a href='mbt' id='mbt'>mbt</a> (3.4-1)</dt> <dd lang='en'>memory-based tagger-generator and tagger</dd> <dt><a href='mbtserver' id='mbtserver'>mbtserver</a> (0.12-1)</dt> <dd lang='en'>Server extensions for the MBT tagger</dd> <dt><a href='meep' id='meep'>meep</a> (1.7.0-3)</dt> <dd lang='en'>software package for FDTD simulation</dd> <dt><a href='meep-lam4' id='meep-lam4'>meep-lam4</a> (1.7.0-3)</dt> <dd lang='en'>software package for FDTD simulation, parallel (OpenMPI) version</dd> <dt><a href='meep-mpi-default' id='meep-mpi-default'>meep-mpi-default</a> (1.7.0-3)</dt> <dd lang='en'>software package for FDTD simulation, parallel (OpenMPI) version</dd> <dt><a href='meep-mpich2' id='meep-mpich2'>meep-mpich2</a> (1.7.0-3)</dt> <dd lang='en'>software package for FDTD simulation, parallel (OpenMPI) version</dd> <dt><a href='meep-openmpi' id='meep-openmpi'>meep-openmpi</a> (1.7.0-3)</dt> <dd lang='en'>software package for FDTD simulation, parallel (OpenMPI) version</dd> <dt><a href='melting' id='melting'>melting</a> (5.2.0-1)</dt> <dd lang='en'>compute the melting temperature of nucleic acid duplex</dd> <dt><a href='merkaartor' id='merkaartor'>merkaartor</a> (0.18.3+ds-5+b1)</dt> <dd>редактор карт для OpenStreetMap.org</dd> <dt><a href='meryl' id='meryl'>meryl</a> (0~20150903+r2013-6)</dt> <dd lang='en'>in- and out-of-core kmer counting and utilities</dd> <dt><a href='metaphlan2' id='metaphlan2'>metaphlan2</a> (2.7.8-1)</dt> <dd lang='en'>Metagenomic Phylogenetic Analysis</dd> <dt><a href='metaphlan2-data' id='metaphlan2-data'>metaphlan2-data</a> (2.6.0+ds-4)</dt> <dd lang='en'>data package for Metagenomic Phylogenetic Analysis</dd> <dt><a href='metastudent' id='metastudent'>metastudent</a> (2.0.1-6)</dt> <dd lang='en'>predictor of Gene Ontology terms from protein sequence</dd> <dt><a href='metastudent-data' id='metastudent-data'>metastudent-data</a> (2.0.1-4)</dt> <dd lang='en'>predictor of Gene Ontology terms from protein sequence - data files</dd> <dt><a href='metastudent-data-2' id='metastudent-data-2'>metastudent-data-2</a> (1.0.0-4)</dt> <dd lang='en'>predictor of Gene Ontology terms from protein sequence - data #2</dd> <dt><a href='metview' id='metview'>metview</a> (5.3.0-2)</dt> <dd lang='en'>Interactive data visualization and analysis environment,</dd> <dt><a href='metview-data' id='metview-data'>metview-data</a> (5.3.0-2)</dt> <dd lang='en'>Data needed for the Metview data analysis environment</dd> <dt><a href='mgltools-bhtree' id='mgltools-bhtree'>mgltools-bhtree</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>Bhtree library extension module</dd> <dt><a href='mgltools-cadd' id='mgltools-cadd'>mgltools-cadd</a> (1.5.7-4) [non-free]</dt> <dd lang='en'>Computer Aided Drug Discovery (CADD) Pipeline</dd> <dt><a href='mgltools-cmolkit' id='mgltools-cmolkit'>mgltools-cmolkit</a> (1.5.7~rc1+cvs.20140424-2) [non-free]</dt> <dd lang='en'>Python classes to interpret trajectories of Gromacs</dd> <dt><a href='mgltools-dejavu' id='mgltools-dejavu'>mgltools-dejavu</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>visualization of 3D geometry using the OpenGL with Python</dd> <dt><a href='mgltools-geomutils' id='mgltools-geomutils'>mgltools-geomutils</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>Python library for geometric analyses</dd> <dt><a href='mgltools-mglutil' id='mgltools-mglutil'>mgltools-mglutil</a> (1.5.7-4) [non-free]</dt> <dd lang='en'>Molecular Graphics Laboratory utility collection</dd> <dt><a href='mgltools-molkit' id='mgltools-molkit'>mgltools-molkit</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>Python classes to read and manipulate molecules</dd> <dt><a href='mgltools-networkeditor' id='mgltools-networkeditor'>mgltools-networkeditor</a> (1.5.7-4) [non-free]</dt> <dd lang='en'>Python GUI library for the editing of networks</dd> <dt><a href='mgltools-opengltk' id='mgltools-opengltk'>mgltools-opengltk</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>Opengltk Python extension</dd> <dt><a href='mgltools-pyautodock' id='mgltools-pyautodock'>mgltools-pyautodock</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>Python implementation of autodock</dd> <dt><a href='mgltools-pybabel' id='mgltools-pybabel'>mgltools-pybabel</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>molecular structure file access and interpretation</dd> <dt><a href='mgltools-pyglf' id='mgltools-pyglf'>mgltools-pyglf</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>GLF library Python extension to write text in OpenGL</dd> <dt><a href='mgltools-scenario2' id='mgltools-scenario2'>mgltools-scenario2</a> (1.5.7-2) [non-free]</dt> <dd lang='en'>Python-based viewer of molecular structures</dd> <dt><a href='mgltools-sff' id='mgltools-sff'>mgltools-sff</a> (1.5.6~rc3~cvs.20120206-1) [non-free]</dt> <dd lang='en'>Simple Force Field for Python</dd> <dt><a href='mgltools-support' id='mgltools-support'>mgltools-support</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>Update mechanism of MGLTools</dd> <dt><a href='mgltools-symserv' id='mgltools-symserv'>mgltools-symserv</a> (1.5.7-2) [non-free]</dt> <dd lang='en'>Symetry server</dd> <dt><a href='mgltools-utpackages' id='mgltools-utpackages'>mgltools-utpackages</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>UT Austin software Python extensions</dd> <dt><a href='mgltools-viewerframework' id='mgltools-viewerframework'>mgltools-viewerframework</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>ViewerFramework supports building visualization applications</dd> <dt><a href='mgltools-vision' id='mgltools-vision'>mgltools-vision</a> (1.5.7+dfsg-2) [non-free]</dt> <dd lang='en'>Python-based Visual Programming Environment</dd> <dt><a href='mgltools-visionlibraries' id='mgltools-visionlibraries'>mgltools-visionlibraries</a> (1.5.7-2) [non-free]</dt> <dd lang='en'>Extensions for Python-based Visual Programming Environment</dd> <dt><a href='mgltools-volume' id='mgltools-volume'>mgltools-volume</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>Volume rendering Python package</dd> <dt><a href='mgltools-webservices' id='mgltools-webservices'>mgltools-webservices</a> (1.5.7-3) [non-free]</dt> <dd lang='en'>webservices for components of autodocktools</dd> <dt><a href='mhap' id='mhap'>mhap</a> (2.1.3+dfsg-2)</dt> <dd lang='en'>locality-sensitive hashing to detect long-read overlaps</dd> <dt><a href='mia-doctools' id='mia-doctools'>mia-doctools</a> (2.4.6-4)</dt> <dd lang='en'>Helper scripts for run-time document creation</dd> <dt><a href='mia-tools' id='mia-tools'>mia-tools</a> (2.4.6-4)</dt> <dd lang='en'>Command line tools for gray scale image processing</dd> <dt><a href='mia-viewit' id='mia-viewit'>mia-viewit</a> (1.0.5-2)</dt> <dd lang='en'>Viewer program for 3D data sets created by using MIA</dd> <dt><a href='mialmpick' id='mialmpick'>mialmpick</a> (0.2.14-2)</dt> <dd lang='en'>Tools for landmark picking in 3D volume data sets</dd> <dt><a href='microbegps' id='microbegps'>microbegps</a> (1.0.0-3)</dt> <dd lang='en'>explorative taxonomic profiling tool for metagenomic data</dd> <dt><a href='microbiomeutil' id='microbiomeutil'>microbiomeutil</a> (20101212+dfsg1-2)</dt> <dd lang='en'>Microbiome Analysis Utilities</dd> <dt><a href='microbiomeutil-data' id='microbiomeutil-data'>microbiomeutil-data</a> (20101212+dfsg1-2)</dt> <dd lang='en'>Reference 16S sequences and NAST-alignments used by microbiomeutil tools</dd> <dt><a href='microhope' id='microhope'>microhope</a> (4.4.4+dfsg-4)</dt> <dd lang='en'>hardware & software framework to learn microcontrollers</dd> <dt><a href='minc-tools' id='minc-tools'>minc-tools</a> (2.3.00+dfsg-3+b1)</dt> <dd lang='en'>MNI medical image format tools</dd> <dt><a href='minia' id='minia'>minia</a> (1.6906-2)</dt> <dd lang='en'>short-read biological sequence assembler</dd> <dt><a href='miniasm' id='miniasm'>miniasm</a> (0.3+dfsg-1)</dt> <dd lang='en'>ultrafast de novo assembler for long noisy DNA sequencing reads</dd> <dt><a href='minimac4' id='minimac4'>minimac4</a> (1.0.0-2)</dt> <dd lang='en'>Fast Imputation Based on State Space Reduction HMM</dd> <dt><a href='minimap' id='minimap'>minimap</a> (0.2-4)</dt> <dd lang='en'>tool for approximate mapping of long biosequences such as DNA reads</dd> <dt><a href='minimap2' id='minimap2'>minimap2</a> (2.15+dfsg-1)</dt> <dd lang='en'>versatile pairwise aligner for genomic and spliced nucleotide sequences</dd> <dt><a href='minisat' id='minisat'>minisat</a> (1:2.2.1-5+b3)</dt> <dd lang='en'>Fast and lightweight SAT solver</dd> <dt><a href='minisat+' id='minisat+'>minisat+</a> (1.0-4)</dt> <dd lang='en'>solver for pseudo-Boolean constraints</dd> <dt><a href='minisat2' id='minisat2'>minisat2</a> (1:2.2.1-5+b3)</dt> <dd lang='en'>Transitional package for minisat</dd> <dt><a href='minisat2'>minisat2</a></dt><dd>виртуальный пакет, предоставляемый <a href='../minisat'>minisat</a></dd> <dt><a href='mipe' id='mipe'>mipe</a> (1.1-7)</dt> <dd lang='en'>Tools to store PCR-derived data</dd> <dt><a href='mira-assembler' id='mira-assembler'>mira-assembler</a> (4.9.6-4+b1)</dt> <dd lang='en'>Whole Genome Shotgun and EST Sequence Assembler</dd> <dt><a href='mira-rfam-12s-rrna' id='mira-rfam-12s-rrna'>mira-rfam-12s-rrna</a> (4.9.6-4)</dt> <dd lang='en'>extract of RFAM 12 rRNA database</dd> <dt><a href='missfits' id='missfits'>missfits</a> (2.8.0-2)</dt> <dd lang='en'>Basic maintenance and packaging tasks on FITS files</dd> <dt><a href='mitools' id='mitools'>mitools</a> (2.0.3-1)</dt> <dd lang='en'>view, convert and perform basic maths with medical image datasets</dd> <dt><a href='mldemos' id='mldemos'>mldemos</a> (0.5.1+git.1.ee5d11f-4)</dt> <dd lang='en'>Machine Learning Demos (MLDemos) with Visualization</dd> <dt><a href='mlpack-bin' id='mlpack-bin'>mlpack-bin</a> (3.0.4-1)</dt> <dd lang='en'>intuitive, fast, scalable C++ machine learning library (binaries)</dd> <dt><a href='mlv-smile' id='mlv-smile'>mlv-smile</a> (1.47-6)</dt> <dd lang='en'>Find statistically significant patterns in sequences</dd> <dt><a href='mmass' id='mmass'>mmass</a> (5.5.0-5)</dt> <dd lang='en'>Mass spectrometry tool for proteomics</dd> <dt><a href='mmass-modules' id='mmass-modules'>mmass-modules</a> (5.5.0-5)</dt> <dd lang='en'>Mass spectrometry tool for proteomics - extension modules</dd> <dt><a href='mobyle' id='mobyle'>mobyle</a> (1.5.5+dfsg-6)</dt> <dd lang='en'>Web portal that provides web forms for command-line software</dd> <dt><a href='mobyle-programs' id='mobyle-programs'>mobyle-programs</a> (5.1.2-3)</dt> <dd lang='en'>program descriptions for the mobyle portal</dd> <dt><a href='mobyle-tutorials' id='mobyle-tutorials'>mobyle-tutorials</a> (1.5.0-4)</dt> <dd lang='en'>program tutorials for the mobyle portal</dd> <dt><a href='mobyle-utils' id='mobyle-utils'>mobyle-utils</a> (1.5.5+dfsg-6)</dt> <dd lang='en'>binary tools used by Mobyle</dd> <dt><a href='mocassin' id='mocassin'>mocassin</a> (2.02.73-1+b1)</dt> <dd lang='en'>MOnte CArlo SimulationS of Ionised Nebulae</dd> <dt><a href='mocassin-benchmarks' id='mocassin-benchmarks'>mocassin-benchmarks</a> (2.02.73-1)</dt> <dd lang='en'>benchmarks for the photoionisation code MOCASSIN</dd> <dt><a href='mocassin-data' id='mocassin-data'>mocassin-data</a> (2.02.73-1)</dt> <dd lang='en'>atomic and optical data for the photoionisation code MOCASSIN</dd> <dt><a href='mocassin-examples' id='mocassin-examples'>mocassin-examples</a> (2.02.73-1)</dt> <dd lang='en'>Examples for the photoionisation code MOCASSIN</dd> <dt><a href='molds' id='molds'>molds</a> (0.3.1-1+b7)</dt> <dd lang='en'>Semi-empirical electronic structure and molecular dynamics</dd> <dt><a href='mona' id='mona'>mona</a> (1.4-17-1+b1)</dt> <dd lang='en'>theorem prover based on automata</dd> <dt><a href='montage' id='montage'>montage</a> (6.0+dfsg-6)</dt> <dd lang='en'>Toolkit for assembling FITS images into mosaics</dd> <dt><a href='montage-gridtools' id='montage-gridtools'>montage-gridtools</a> (6.0+dfsg-6)</dt> <dd lang='en'>Create files to run montage on the grid</dd> <dt><a href='montecarlo-base' id='montecarlo-base'>montecarlo-base</a> (20061220+dfsg3-3.1)</dt> <dd lang='en'>[Physics] Common files for CERNLIB Monte Carlo libraries</dd> <dt><a href='montecarlo-data' id='montecarlo-data'>montecarlo-data</a> (20061220+dfsg3-3.1)</dt> <dd lang='en'>[Physics] data for CERNLIB Monte Carlo libraries</dd> <dt><a href='mopac7-bin' id='mopac7-bin'>mopac7-bin</a> (1.15-6+b3)</dt> <dd lang='en'>Semi-empirical Quantum Chemistry Library (binaries)</dd> <dt><a href='morse-simulator' id='morse-simulator'>morse-simulator</a> (1.4-5)</dt> <dd lang='en'>Multi-OpenRobot Simulation Engine</dd> <dt><a href='morse-simulator-data' id='morse-simulator-data'>morse-simulator-data</a> (1.4-5)</dt> <dd lang='en'>Multi-OpenRobot Simulation Engine</dd> <dt><a href='mothur' id='mothur'>mothur</a> (1.41.21-1)</dt> <dd lang='en'>sequence analysis suite for research on microbiota</dd> <dt><a href='mpb' id='mpb'>mpb</a> (1.7.0-5)</dt> <dd lang='en'>MIT Photonic-Bands</dd> <dt><a href='mpb-mpi' id='mpb-mpi'>mpb-mpi</a> (1.7.0-5)</dt> <dd lang='en'>MIT Photonic-Bands, parallel (mpich) version</dd> <dt><a href='mpb-scm' id='mpb-scm'>mpb-scm</a> (1.7.0-5)</dt> <dd lang='en'>MIT Photonic-Bands initialisation files</dd> <dt><a href='mpgrafic' id='mpgrafic'>mpgrafic</a> (0.3.18-1)</dt> <dd lang='en'>MPI version of N-body initial conditions grafic package</dd> <dt><a href='mpqc' id='mpqc'>mpqc</a> (2.3.1-19)</dt> <dd lang='en'>Massively Parallel Quantum Chemistry Program</dd> <dt><a href='mpqc-support' id='mpqc-support'>mpqc-support</a> (2.3.1-19)</dt> <dd lang='en'>Massively Parallel Quantum Chemistry Program (support tools)</dd> <dt><a href='mpqc3' id='mpqc3'>mpqc3</a> (0.0~git20170114-4.1)</dt> <dd lang='en'>Massively Parallel Quantum Chemistry Program</dd> <dt><a href='mpqc3-data' id='mpqc3-data'>mpqc3-data</a> (0.0~git20170114-4.1)</dt> <dd lang='en'>Massively Parallel Quantum Chemistry Program (data files)</dd> <dt><a href='mptp' id='mptp'>mptp</a> (0.2.4-1)</dt> <dd lang='en'>single-locus species delimitation</dd> <dt><a href='mrbayes' id='mrbayes'>mrbayes</a> (3.2.6+dfsg-2+b1)</dt> <dd lang='en'>Bayesian Inference of Phylogeny</dd> <dt><a href='mrbayes-mpi' id='mrbayes-mpi'>mrbayes-mpi</a> (3.2.6+dfsg-2+b1)</dt> <dd lang='en'>Bayesian Inference of Phylogeny - mpi version</dd> <dt><a href='mriconvert' id='mriconvert'>mriconvert</a> (1:2.1.0-3)</dt> <dd>утилита преобразования медицинских изображений</dd> <dt><a href='mricron' id='mricron'>mricron</a> (0.20140804.1~dfsg.1-3)</dt> <dd>преобразование, просмотр и анализ снимков магнитно-резонансной томографии</dd> <dt><a href='mricron-data' id='mricron-data'>mricron-data</a> (0.20140804.1~dfsg.1-3)</dt> <dd lang='en'>data files for MRIcron</dd> <dt><a href='mrpt-apps' id='mrpt-apps'>mrpt-apps</a> (1:1.5.6-1+b1)</dt> <dd lang='en'>Mobile Robot Programming Toolkit - Console and GUI applications</dd> <dt><a href='mrpt-common' id='mrpt-common'>mrpt-common</a> (1:1.5.6-1)</dt> <dd lang='en'>Mobile Robot Programming Toolkit - Example datasets and files</dd> <dt><a href='mrs' id='mrs'>mrs</a> (6.0.5+dfsg-7+b2)</dt> <dd lang='en'>Information Retrieval System for Biomedical databanks</dd> <dt><a href='mrtrix' id='mrtrix'>mrtrix</a> (0.2.13-2)</dt> <dd lang='en'>diffusion-weighted MRI white matter tractography</dd> <dt><a href='mrtrix3' id='mrtrix3'>mrtrix3</a> (3.0~rc3+git135-g2b8e7d0c2-3)</dt> <dd lang='en'>diffusion-weighted MRI white matter tractography</dd> <dt><a href='mseed2sac' id='mseed2sac'>mseed2sac</a> (2.2+ds1-4)</dt> <dd lang='en'>Convert MiniSEED time series data to SAC</dd> <dt><a href='mssstest' id='mssstest'>mssstest</a> (3.0-7) [non-free]</dt> <dd lang='en'>Normalisation of disease scores for patients with Multiple Sclerosis</dd> <dt><a href='mummer' id='mummer'>mummer</a> (3.23+dfsg-4)</dt> <dd lang='en'>Efficient sequence alignment of full genomes</dd> <dt><a href='munipack' id='munipack'>munipack</a> (0.5.11-2)</dt> <dd lang='en'>Astronomical photometry software package</dd> <dt><a href='munipack-cli' id='munipack-cli'>munipack-cli</a> (0.5.11-2)</dt> <dd lang='en'>Command line interface of Munipack</dd> <dt><a href='munipack-core' id='munipack-core'>munipack-core</a> (0.5.11-2)</dt> <dd lang='en'>Core routines of Munipack</dd> <dt><a href='munipack-gui' id='munipack-gui'>munipack-gui</a> (0.5.11-2)</dt> <dd lang='en'>Graphical user interface of Munipack</dd> <dt><a href='murasaki' id='murasaki'>murasaki</a> (1.68.6-8+b1)</dt> <dd lang='en'>homology detection tool across multiple large genomes</dd> <dt><a href='murasaki-common' id='murasaki-common'>murasaki-common</a> (1.68.6-8)</dt> <dd lang='en'>homology detection tool across multiple large genomes (common files)</dd> <dt><a href='murasaki-mpi' id='murasaki-mpi'>murasaki-mpi</a> (1.68.6-8+b1)</dt> <dd lang='en'>homology detection tool across multiple large genomes (MPI-version)</dd> <dt><a href='muscle' id='muscle'>muscle</a> (1:3.8.1551-2)</dt> <dd lang='en'>Multiple alignment program of protein sequences</dd> <dt><a href='music-bin' id='music-bin'>music-bin</a> (1.0.7-4+b1)</dt> <dd lang='en'>Multi-Simulation Coordinator for MPI -- Utilities</dd> <dt><a href='mustang' id='mustang'>mustang</a> (3.2.3-3)</dt> <dd lang='en'>multiple structural alignment of proteins</dd> <dt><a href='mustang-testdata' id='mustang-testdata'>mustang-testdata</a> (3.2.3-3)</dt> <dd lang='en'>multiple structural alignment of proteins, test data</dd> <dt><a href='nanook' id='nanook'>nanook</a> (1.33+dfsg-1)</dt> <dd lang='en'>pre- and post-alignment analysis of nanopore sequencing data</dd> <dt><a href='nanopolish' id='nanopolish'>nanopolish</a> (0.11.0-2)</dt> <dd lang='en'>consensus caller for nanopore sequencing data</dd> <dt><a href='nast-ier' id='nast-ier'>nast-ier</a> (20101212+dfsg1-2)</dt> <dd lang='en'>NAST-based DNA alignment tool</dd> <dt><a href='nastran' id='nastran'>nastran</a> (0.1.95-1+b2) [non-free]</dt> <dd lang='en'>NASA Structural Analysis System</dd> <dt><a href='nautic' id='nautic'>nautic</a> (1.5-4)</dt> <dd lang='en'>computation of observer position in astro-navigation</dd> <dt><a href='ncbi-blast+' id='ncbi-blast+'>ncbi-blast+</a> (2.8.1-1+deb10u1)</dt> <dd>поиск первичных биологических последовательностей</dd> <dt><a href='ncbi-blast+-legacy' id='ncbi-blast+-legacy'>ncbi-blast+-legacy</a> (2.8.1-1+deb10u1)</dt> <dd lang='en'>NCBI Blast legacy call script</dd> <dt><a href='ncbi-entrez-direct' id='ncbi-entrez-direct'>ncbi-entrez-direct</a> (10.9.20190219+ds-1+b10)</dt> <dd lang='en'>NCBI Entrez utilities on the command line</dd> <dt><a href='ncbi-epcr' id='ncbi-epcr'>ncbi-epcr</a> (2.3.12-1-7)</dt> <dd lang='en'>Tool to test a DNA sequence for the presence of sequence tagged sites</dd> <dt><a href='ncbi-rrna-data' id='ncbi-rrna-data'>ncbi-rrna-data</a> (6.1.20170106+dfsg1-0+deb10u2)</dt> <dd lang='en'>large rRNA BLAST databases distributed with the NCBI toolkit</dd> <dt><a href='ncbi-seg' id='ncbi-seg'>ncbi-seg</a> (0.0.20000620-5)</dt> <dd lang='en'>tool to mask segments of low compositional complexity in amino acid sequences</dd> <dt><a href='ncbi-tools-bin' id='ncbi-tools-bin'>ncbi-tools-bin</a> (6.1.20170106+dfsg1-0+deb10u2)</dt> <dd lang='en'>NCBI libraries for biology applications (text-based utilities)</dd> <dt><a href='ncbi-tools-x11' id='ncbi-tools-x11'>ncbi-tools-x11</a> (6.1.20170106+dfsg1-0+deb10u2)</dt> <dd lang='en'>NCBI libraries for biology applications (X-based utilities)</dd> <dt><a href='ncl-ncarg' id='ncl-ncarg'>ncl-ncarg</a> (6.5.0-2)</dt> <dd lang='en'>NCAR Command Language and NCAR graphics</dd> <dt><a href='ncl-tools' id='ncl-tools'>ncl-tools</a> (2.1.21+git20180827.c71b264-2)</dt> <dd lang='en'>tools to deal with NEXUS files</dd> <dt><a href='nco' id='nco'>nco</a> (4.7.9-1)</dt> <dd lang='en'>Command-line operators to analyze netCDF files</dd> <dt><a href='ncoils' id='ncoils'>ncoils</a> (2002-7)</dt> <dd lang='en'>coiled coil secondary structure prediction</dd> <dt><a href='ncview' id='ncview'>ncview</a> (2.1.8+ds-3+b1)</dt> <dd lang='en'>X11 visual browser for NetCDF format files</dd> <dt><a href='neat' id='neat'>neat</a> (2.2-1)</dt> <dd lang='en'>Nebular Empirical Analysis Tool</dd> <dt><a href='neobio' id='neobio'>neobio</a> (0.0.20030929-4)</dt> <dd lang='en'>computes alignments of amino acid and nucleotide sequences</dd> <dt><a href='netcdf-bin' id='netcdf-bin'>netcdf-bin</a> (1:4.6.2-1)</dt> <dd>чтение и запись файлов NetCDF</dd> <dt><a href='neurodebian' id='neurodebian'>neurodebian</a> (0.38.3)</dt> <dd lang='en'>neuroscience-oriented distribution - repository configuration</dd> <dt><a href='neurodebian-archive-keyring' id='neurodebian-archive-keyring'>neurodebian-archive-keyring</a> (0.38.3)</dt> <dd lang='en'>neuroscience-oriented distribution - GnuPG archive keys</dd> <dt><a href='neurodebian-desktop' id='neurodebian-desktop'>neurodebian-desktop</a> (0.38.3)</dt> <dd lang='en'>neuroscience-oriented distribution - desktop integration</dd> <dt><a href='neurodebian-dev' id='neurodebian-dev'>neurodebian-dev</a> (0.38.3)</dt> <dd lang='en'>neuroscience-oriented distribution - development tools</dd> <dt><a href='neurodebian-freeze' id='neurodebian-freeze'>neurodebian-freeze</a> (0.38.3)</dt> <dd lang='en'>nd_freeze tool to freeze APT sources to use snapshots</dd> <dt><a href='neurodebian-popularity-contest' id='neurodebian-popularity-contest'>neurodebian-popularity-contest</a> (0.38.3)</dt> <dd lang='en'>neuroscience-oriented distribution - popcon integration</dd> <dt><a href='neuron' id='neuron'>neuron</a> (7.6.3-1)</dt> <dd lang='en'>Simulation environment for computational models of neurons</dd> <dt><a href='neuron-dev' id='neuron-dev'>neuron-dev</a> (7.6.3-1)</dt> <dd lang='en'>Neuron simulation environment - Development files</dd> <dt><a href='nifti2dicom' id='nifti2dicom'>nifti2dicom</a> (0.4.11-1+b4)</dt> <dd lang='en'>convert 3D medical images to DICOM 2D series</dd> <dt><a href='nifti2dicom-data' id='nifti2dicom-data'>nifti2dicom-data</a> (0.4.11-1)</dt> <dd lang='en'>data files for nifti2dicom</dd> <dt><a href='njplot' id='njplot'>njplot</a> (2.4-8)</dt> <dd lang='en'>phylogenetic tree drawing program</dd> <dt><a href='norsnet' id='norsnet'>norsnet</a> (1.0.17-4)</dt> <dd lang='en'>tool to identify unstructured loops in proteins</dd> <dt><a href='norsp' id='norsp'>norsp</a> (1.0.6-4)</dt> <dd lang='en'>predictor of non-regular secondary structure</dd> <dt><a href='numdiff' id='numdiff'>numdiff</a> (5.9.0-1)</dt> <dd lang='en'>Compare similar files with numeric fields</dd> <dt><a href='nutsqlite' id='nutsqlite'>nutsqlite</a> (2.0.6-1)</dt> <dd lang='en'>Dietary nutrition analysis software</dd> <dt><a href='nwchem' id='nwchem'>nwchem</a> (6.8.1-5)</dt> <dd lang='en'>High-performance computational chemistry software</dd> <dt><a href='nwchem-data' id='nwchem-data'>nwchem-data</a> (6.8.1-5)</dt> <dd lang='en'>High-performance computational chemistry software (data files)</dd> <dt><a href='oar-common' id='oar-common'>oar-common</a> (2.5.8-1+deb10u1)</dt> <dd lang='en'>OAR batch scheduler common package</dd> <dt><a href='oar-node' id='oar-node'>oar-node</a> (2.5.8-1+deb10u1)</dt> <dd lang='en'>OAR batch scheduler node package</dd> <dt><a href='oar-server' id='oar-server'>oar-server</a> (2.5.8-1+deb10u1)</dt> <dd lang='en'>OAR batch scheduler server package</dd> <dt><a href='oar-server-mysql' id='oar-server-mysql'>oar-server-mysql</a> (2.5.8-1+deb10u1)</dt> <dd lang='en'>OAR batch scheduler MySQL server backend package</dd> <dt><a href='oar-server-pgsql' id='oar-server-pgsql'>oar-server-pgsql</a> (2.5.8-1+deb10u1)</dt> <dd lang='en'>OAR batch scheduler PostgreSQL server backend package</dd> <dt><a href='oar-user' id='oar-user'>oar-user</a> (2.5.8-1+deb10u1)</dt> <dd lang='en'>OAR batch scheduler user package</dd> <dt><a href='oar-user-mysql' id='oar-user-mysql'>oar-user-mysql</a> (2.5.8-1+deb10u1)</dt> <dd lang='en'>OAR batch scheduler MySQL user backend package</dd> <dt><a href='oar-user-pgsql' id='oar-user-pgsql'>oar-user-pgsql</a> (2.5.8-1+deb10u1)</dt> <dd lang='en'>OAR batch scheduler PostgreSQL user backend package</dd> <dt><a href='oar-web-status' id='oar-web-status'>oar-web-status</a> (2.5.8-1+deb10u1)</dt> <dd lang='en'>OAR batch scheduler visualization tool package</dd> <dt><a href='obdgpslogger' id='obdgpslogger'>obdgpslogger</a> (0.16-1.3+b2)</dt> <dd lang='en'>suite of tools to log OBDII and GPS data</dd> <dt><a href='occt-draw' id='occt-draw'>occt-draw</a> (7.3.0+dfsg1-5)</dt> <dd lang='en'>Open CASCADE Technology command interpreter and graphical test system</dd> <dt><a href='oce-draw' id='oce-draw'>oce-draw</a> (0.18.2-3)</dt> <dd lang='en'>OpenCASCADE Community Edition CAE platform shared library</dd> <dt><a href='octave-bart' id='octave-bart'>octave-bart</a> (0.4.04-2)</dt> <dd lang='en'>Octave bindings for BART</dd> <dt><a href='octave-biosig' id='octave-biosig'>octave-biosig</a> (1.9.3-2)</dt> <dd lang='en'>Octave bindings for BioSig library</dd> <dt><a href='octave-gdf' id='octave-gdf'>octave-gdf</a> (0.1.2-2.1+b3)</dt> <dd lang='en'>IO library for the GDF -- Octave interface</dd> <dt><a href='octave-psychtoolbox-3' id='octave-psychtoolbox-3'>octave-psychtoolbox-3</a> (3.0.15.20190207.dfsg1-1)</dt> <dd lang='en'>toolbox for vision research -- Octave bindings</dd> <dt><a href='octomap-tools' id='octomap-tools'>octomap-tools</a> (1.8.1+dfsg-1)</dt> <dd lang='en'>Tools for 3D occupancy grid mapping</dd> <dt><a href='octovis' id='octovis'>octovis</a> (1.8.1+dfsg-1)</dt> <dd lang='en'>Visualization tool for OctoMap</dd> <dt><a href='odil' id='odil'>odil</a> (0.10.0-3)</dt> <dd lang='en'>C++11 library for the DICOM standard (application)</dd> <dt><a href='odin' id='odin'>odin</a> (2.0.3-1)</dt> <dd>разработка, симуляция и запуск данных магнитного резонанса</dd> <dt><a href='ogdi-bin' id='ogdi-bin'>ogdi-bin</a> (3.2.1+ds-4)</dt> <dd lang='en'>Open Geographic Datastore Interface Library -- utilities</dd> <dt><a href='openbabel' id='openbabel'>openbabel</a> (2.4.1+dfsg-3)</dt> <dd lang='en'>Chemical toolbox utilities (cli)</dd> <dt><a href='openbabel-gui' id='openbabel-gui'>openbabel-gui</a> (2.4.1+dfsg-3)</dt> <dd lang='en'>Chemical toolbox utilities (graphical user interface)</dd> <dt><a href='opencaster' id='opencaster'>opencaster</a> (3.2.2+dfsg-1.1+b1)</dt> <dd lang='en'>MPEG2 transport stream data generator and packet manipulator</dd> <dt><a href='openfoam' id='openfoam'>openfoam</a> (1812+dfsg1-2)</dt> <dd lang='en'>Open source toolbox for Computational Fluid Dynamics (CFD) - binaries</dd> <dt><a href='openfoam-examples' id='openfoam-examples'>openfoam-examples</a> (1812+dfsg1-2)</dt> <dd lang='en'>Open source toolbox for Computational Fluid Dynamics (CFD) - examples</dd> <dt><a href='openms' id='openms'>openms</a> (2.4.0-real-1)</dt> <dd lang='en'>package for LC/MS data management and analysis</dd> <dt><a href='openms-common' id='openms-common'>openms-common</a> (2.4.0-real-1)</dt> <dd lang='en'>package for LC/MS data management and analysis - shared data</dd> <dt><a href='openmx' id='openmx'>openmx</a> (3.8.5+dfsg1-1)</dt> <dd lang='en'>package for nano-scale material simulations</dd> <dt><a href='openmx-data' id='openmx-data'>openmx-data</a> (3.8.5+dfsg1-1)</dt> <dd lang='en'>package for nano-scale material simulations (data)</dd> <dt><a href='openrocket' id='openrocket'>openrocket</a> (15.03.5) [contrib]</dt> <dd lang='en'>Model Rocket Simulator</dd> <dt><a href='openuniverse' id='openuniverse'>openuniverse</a> (1.0beta3.1+dfsg-6)</dt> <dd lang='en'>3D Universe Simulator</dd> <dt><a href='openuniverse-common' id='openuniverse-common'>openuniverse-common</a> (1.0beta3.1+dfsg-6)</dt> <dd lang='en'>3D Universe Simulator data files</dd> <dt><a href='optgeo' id='optgeo'>optgeo</a> (2.25-1)</dt> <dd lang='en'>simulator for geometrical optics</dd> <dt><a href='opticalraytracer' id='opticalraytracer'>opticalraytracer</a> (3.2-1.1)</dt> <dd lang='en'>Virtual lens design workshop</dd> <dt><a href='origami' id='origami'>origami</a> (1.2.7+really0.7.4-1.1)</dt> <dd lang='en'>command-line management tool for Folding @ Home clients</dd> <dt><a href='orthanc' id='orthanc'>orthanc</a> (1.5.6+dfsg-1+deb10u1) [security]</dt> <dd lang='en'>Lightweight, RESTful DICOM server for medical imaging</dd> <dt><a href='orthanc-dicomweb' id='orthanc-dicomweb'>orthanc-dicomweb</a> (0.6+dfsg-1)</dt> <dd lang='en'>Plugin to extend Orthanc with support of WADO and DICOMweb</dd> <dt><a href='orthanc-imagej' id='orthanc-imagej'>orthanc-imagej</a> (1.2+dfsg-1)</dt> <dd lang='en'>ImageJ plugin to import images from Orthanc</dd> <dt><a href='orthanc-mysql' id='orthanc-mysql'>orthanc-mysql</a> (2.0-2)</dt> <dd lang='en'>Plugins to use MySQL or MariaDB as a database back-end to Orthanc</dd> <dt><a href='orthanc-postgresql' id='orthanc-postgresql'>orthanc-postgresql</a> (3.2-1)</dt> <dd lang='en'>Plugins to use PostgreSQL as a database back-end to Orthanc</dd> <dt><a href='orthanc-webviewer' id='orthanc-webviewer'>orthanc-webviewer</a> (2.5-1)</dt> <dd lang='en'>Web viewer of medical images for Orthanc</dd> <dt><a href='orthanc-wsi' id='orthanc-wsi'>orthanc-wsi</a> (0.6-2)</dt> <dd lang='en'>Whole-slide imaging support for Orthanc (digital pathology)</dd> <dt><a href='ossim-core' id='ossim-core'>ossim-core</a> (2.6.2-1)</dt> <dd lang='en'>OSSIM core utilities</dd> <dt><a href='otb-bin' id='otb-bin'>otb-bin</a> (6.6.1+dfsg-1+b1)</dt> <dd lang='en'>ORFEO Toolbox command line applications</dd> <dt><a href='otb-bin-qt' id='otb-bin-qt'>otb-bin-qt</a> (6.6.1+dfsg-1+b1)</dt> <dd lang='en'>ORFEO Toolbox graphical user interface applications</dd> <dt><a href='otb-testdriver' id='otb-testdriver'>otb-testdriver</a> (6.6.1+dfsg-1+b1)</dt> <dd lang='en'>ORFEO Toolbox library - OTBTestDriver</dd> <dt><a href='otf-trace' id='otf-trace'>otf-trace</a> (1.12.5+dfsg-4)</dt> <dd lang='en'>Open Trace Format support library - development files</dd> <dt><a href='p4vasp' id='p4vasp'>p4vasp</a> (0.3.30+dfsg-5)</dt> <dd lang='en'>visualization suite for the Vienna Ab-initio Simulation Package (VASP)</dd> <dt><a href='paje.app' id='paje.app'>paje.app</a> (1.98-1+b7)</dt> <dd lang='en'>generic visualization tool (Gantt chart and more)</dd> <dt><a href='pal2nal' id='pal2nal'>pal2nal</a> (14.1-2)</dt> <dd lang='en'>converts proteins to genomic DNA alignment</dd> <dt><a href='paleomix' id='paleomix'>paleomix</a> (1.2.13.3-1)</dt> <dd lang='en'>pipelines and tools for the processing of ancient and modern HTS data</dd> <dt><a href='paml' id='paml'>paml</a> (4.9h+dfsg-1)</dt> <dd lang='en'>Phylogenetic Analysis by Maximum Likelihood (PAML)</dd> <dt><a href='paraclu' id='paraclu'>paraclu</a> (9-2)</dt> <dd lang='en'>Parametric clustering of genomic and transcriptomic features</dd> <dt><a href='parafly' id='parafly'>parafly</a> (0.0.2013.01.21-4)</dt> <dd lang='en'>parallel command processing using OpenMP</dd> <dt><a href='paraview' id='paraview'>paraview</a> (5.4.1+dfsg4-3.1+b2)</dt> <dd>приложение параллельной визуализации</dd> <dt><a href='parsinsert' id='parsinsert'>parsinsert</a> (1.04-4)</dt> <dd lang='en'>Parsimonious Insertion of unclassified sequences into phylogenetic trees</dd> <dt><a href='parsinsert-testdata' id='parsinsert-testdata'>parsinsert-testdata</a> (1.04-4)</dt> <dd lang='en'>Test data for parsinsert</dd> <dt><a href='parsnp' id='parsnp'>parsnp</a> (1.2+dfsg-5)</dt> <dd lang='en'>rapid core genome multi-alignment</dd> <dt><a href='patman' id='patman'>patman</a> (1.2.2+dfsg-5)</dt> <dd lang='en'>rapid alignment of short sequences to large databases</dd> <dt><a href='paw' id='paw'>paw</a> (1:2.14.04.dfsg.2-9.1+b4)</dt> <dd lang='en'>Physics Analysis Workstation - a graphical analysis program</dd> <dt><a href='paw++' id='paw++'>paw++</a> (1:2.14.04.dfsg.2-9.1+b4)</dt> <dd lang='en'>Physics Analysis Workstation (Lesstif-enhanced version)</dd> <dt><a href='paw-common' id='paw-common'>paw-common</a> (1:2.14.04.dfsg.2-9.1)</dt> <dd lang='en'>Physics Analysis Workstation (common files)</dd> <dt><a href='paw-demos' id='paw-demos'>paw-demos</a> (1:2.14.04.dfsg.2-9.1)</dt> <dd lang='en'>Physics Analysis Workstation examples and tests</dd> <dt><a href='pbbamtools' id='pbbamtools'>pbbamtools</a> (0.19.0+dfsg-4)</dt> <dd lang='en'>processing Pacific Biosciences binary alignment/map files</dd> <dt><a href='pbbarcode' id='pbbarcode'>pbbarcode</a> (0.8.0-5)</dt> <dd lang='en'>annotate PacBio sequencing reads with barcode information</dd> <dt><a href='pbdagcon' id='pbdagcon'>pbdagcon</a> (0.3+git20161121.0000000+ds-1.1)</dt> <dd lang='en'>sequence consensus using directed acyclic graphs</dd> <dt><a href='pbgenomicconsensus' id='pbgenomicconsensus'>pbgenomicconsensus</a> (2.3.2-5)</dt> <dd lang='en'>Pacific Biosciences variant and consensus caller</dd> <dt><a href='pbh5tools' id='pbh5tools'>pbh5tools</a> (0.8.0+git20170929.58d54ff+dfsg-1)</dt> <dd lang='en'>tools for manipulating Pacific Biosciences HDF5 files</dd> <dt><a href='pbhoney' id='pbhoney'>pbhoney</a> (15.8.24+dfsg-3)</dt> <dd lang='en'>genomic structural variation discovery</dd> <dt><a href='pbjelly' id='pbjelly'>pbjelly</a> (15.8.24+dfsg-3)</dt> <dd lang='en'>genome assembly upgrading tool</dd> <dt><a href='pbsim' id='pbsim'>pbsim</a> (1.0.3+git20180330.e014b1d+dfsg-1)</dt> <dd lang='en'>simulator for PacBio sequencing reads</dd> <dt><a href='pdb2pqr' id='pdb2pqr'>pdb2pqr</a> (2.1.1+dfsg-5)</dt> <dd lang='en'>Preparation of protein structures for electrostatics calculations</dd> <dt><a href='pegasus-wms' id='pegasus-wms'>pegasus-wms</a> (4.4.0+dfsg-8)</dt> <dd lang='en'>Scientific workflow management system for HTCondor</dd> <dt><a href='perlprimer' id='perlprimer'>perlprimer</a> (1.2.4-1)</dt> <dd lang='en'>Graphical design of primers for PCR</dd> <dt><a href='perm' id='perm'>perm</a> (0.4.0-4)</dt> <dd lang='en'>efficient mapping of short reads with periodic spaced seeds</dd> <dt><a href='pftools' id='pftools'>pftools</a> (3+dfsg-3)</dt> <dd lang='en'>build and search protein and DNA generalized profiles</dd> <dt><a href='phast' id='phast'>phast</a> (1.4+dfsg-1)</dt> <dd lang='en'>phylogenetic analysis with space/time models</dd> <dt><a href='phipack' id='phipack'>phipack</a> (0.0.20160614-3)</dt> <dd lang='en'>PHI test and other tests of recombination</dd> <dt><a href='phybin' id='phybin'>phybin</a> (0.3-3)</dt> <dd lang='en'>binning/clustering newick trees by topology</dd> <dt><a href='phylip' id='phylip'>phylip</a> (1:3.697+dfsg-1)</dt> <dd lang='en'>package of programs for inferring phylogenies</dd> <dt><a href='phyml' id='phyml'>phyml</a> (3:3.3.20180621-2)</dt> <dd lang='en'>Phylogenetic estimation using Maximum Likelihood</dd> <dt><a href='physamp' id='physamp'>physamp</a> (1.1.0-1)</dt> <dd lang='en'>sample sequence alignment corresponding to phylogeny</dd> <dt><a href='phyutility' id='phyutility'>phyutility</a> (2.7.3+dfsg-2)</dt> <dd lang='en'>simple analyses or modifications on both phylogenetic trees and data matrices</dd> <dt><a href='phyx' id='phyx'>phyx</a> (0.999+ds-1)</dt> <dd lang='en'>UNIX-style phylogenetic analyses on trees and sequences</dd> <dt><a href='picard-tools' id='picard-tools'>picard-tools</a> (2.18.25+dfsg-2)</dt> <dd lang='en'>Command line tools to manipulate SAM and BAM files</dd> <dt><a href='picosat' id='picosat'>picosat</a> (960-1+b2)</dt> <dd lang='en'>SAT solver with proof and core support</dd> <dt><a href='piler' id='piler'>piler</a> (0~20140707-2)</dt> <dd lang='en'>genomic repeat analysis</dd> <dt><a href='pilon' id='pilon'>pilon</a> (1.23+dfsg-1)</dt> <dd lang='en'>automated genome assembly improvement and variant detection tool</dd> <dt><a href='pirs' id='pirs'>pirs</a> (2.0.2+dfsg-8)</dt> <dd lang='en'>Profile based Illumina pair-end Reads Simulator</dd> <dt><a href='pirs-examples' id='pirs-examples'>pirs-examples</a> (2.0.2+dfsg-8)</dt> <dd lang='en'>profile basd Illumina pair-end Reads Simulator (example data)</dd> <dt><a href='pirs-profiles' id='pirs-profiles'>pirs-profiles</a> (2.0.2+dfsg-8)</dt> <dd lang='en'>profile basd Illumina pair-end Reads Simulator (profile data)</dd> <dt><a href='pkg-r-autopkgtest' id='pkg-r-autopkgtest'>pkg-r-autopkgtest</a> (20190121)</dt> <dd lang='en'>Script for the automatic testing of R packages</dd> <dt><a href='pktools' id='pktools'>pktools</a> (2.6.7.6+ds-1+b1)</dt> <dd lang='en'>GDAL add-on tools to perform useful raster processing</dd> <dt><a href='placnet' id='placnet'>placnet</a> (1.03-3)</dt> <dd lang='en'>Plasmid Constellation Network project</dd> <dt><a href='planets' id='planets'>planets</a> (0.1.13-19)</dt> <dd lang='en'>Gravitation simulation of planetary bodies</dd> <dt><a href='plasmidseeker' id='plasmidseeker'>plasmidseeker</a> (1.0+dfsg-1)</dt> <dd lang='en'>identification of known plasmids from whole-genome sequencing reads</dd> <dt><a href='plast' id='plast'>plast</a> (2.3.2+dfsg-1)</dt> <dd lang='en'>Parallel Local Sequence Alignment Search Tool</dd> <dt><a href='plast-example' id='plast-example'>plast-example</a> (2.3.2+dfsg-1)</dt> <dd lang='en'>Parallel Local Sequence Alignment Search Tool (example data)</dd> <dt><a href='plastimatch' id='plastimatch'>plastimatch</a> (1.7.4+dfsg.1-2)</dt> <dd lang='en'>medical image reconstruction and registration</dd> <dt><a href='plink' id='plink'>plink</a> (1.07+dfsg-2)</dt> <dd lang='en'>whole-genome association analysis toolset</dd> <dt><a href='plink1.9' id='plink1.9'>plink1.9</a> (1.90~b6.6-181012-1)</dt> <dd lang='en'>whole-genome association analysis toolset</dd> <dt><a href='pluto-jpl-eph' id='pluto-jpl-eph'>pluto-jpl-eph</a> (0.0~git20180228-1.1)</dt> <dd lang='en'>command line handling of JPL ephemeres data</dd> <dt><a href='pluto-lunar' id='pluto-lunar'>pluto-lunar</a> (0.0~git20180825.e34c1d1-1)</dt> <dd lang='en'>routines for predictions of positions in solar system</dd> <dt><a href='pnetcdf-bin' id='pnetcdf-bin'>pnetcdf-bin</a> (1.10.0-3+b1)</dt> <dd lang='en'>Programs for reading and writing parallel NetCDF files</dd> <dt><a href='poa' id='poa'>poa</a> (2.0+20060928-7)</dt> <dd lang='en'>Partial Order Alignment for multiple sequence alignment</dd> <dt><a href='populations' id='populations'>populations</a> (1.2.33+svn0120106+dfsg-2)</dt> <dd lang='en'>population genetic software</dd> <dt><a href='porechop' id='porechop'>porechop</a> (0.2.4+dfsg-1)</dt> <dd lang='en'>adapter trimmer for Oxford Nanopore reads</dd> <dt><a href='poretools' id='poretools'>poretools</a> (0.6.0+dfsg-3)</dt> <dd lang='en'>toolkit for nanopore nucleotide sequencing data</dd> <dt><a href='poretools-data' id='poretools-data'>poretools-data</a> (0.6.0+dfsg-3)</dt> <dd lang='en'>toolkit for nanopore nucleotide sequencing data -- sample datasets</dd> <dt><a href='pp-popularity-contest' id='pp-popularity-contest'>pp-popularity-contest</a> (1.0.6-4+b1)</dt> <dd lang='en'>PredictProtein popularity contest</dd> <dt><a href='pprepair' id='pprepair'>pprepair</a> (0.0~20170614-dd91a21-3+b1)</dt> <dd lang='en'>planar partition repair tool</dd> <dt><a href='praat' id='praat'>praat</a> (6.0.48-1)</dt> <dd lang='en'>program for speech analysis and synthesis</dd> <dt><a href='prank' id='prank'>prank</a> (0.0.170427+dfsg-2)</dt> <dd lang='en'>Probabilistic Alignment Kit for DNA, codon and amino-acid sequences</dd> <dt><a href='predictnls' id='predictnls'>predictnls</a> (1.0.20-5)</dt> <dd lang='en'>prediction and analysis of protein nuclear localization signals</dd> <dt><a href='predictprotein' id='predictprotein'>predictprotein</a> (1.1.08-1)</dt> <dd lang='en'>suite of protein sequence analysis tools</dd> <dt><a href='prepair' id='prepair'>prepair</a> (0.7.1-3+b2)</dt> <dd lang='en'>polygon repair tool</dd> <dt><a href='prepair-data' id='prepair-data'>prepair-data</a> (0.7.1-3)</dt> <dd lang='en'>polygon repair tool -- example data</dd> <dt><a href='prime-phylo' id='prime-phylo'>prime-phylo</a> (1.0.11-7+b1)</dt> <dd lang='en'>bayesian estimation of gene trees taking the species tree into account</dd> <dt><a href='primer3' id='primer3'>primer3</a> (2.4.0-2)</dt> <dd lang='en'>tool to design flanking oligo nucleotides for DNA amplification</dd> <dt><a href='primer3-examples' id='primer3-examples'>primer3-examples</a> (2.4.0-2)</dt> <dd lang='en'>tool to design flanking oligo nucleotides for DNA amplification (examples)</dd> <dt><a href='proalign' id='proalign'>proalign</a> (0.603-4)</dt> <dd lang='en'>Probabilistic multiple alignment program</dd> <dt><a href='probabel' id='probabel'>probabel</a> (0.5.0+dfsg-3)</dt> <dd lang='en'>Toolset for Genome-Wide Association Analysis</dd> <dt><a href='probabel-examples' id='probabel-examples'>probabel-examples</a> (0.5.0+dfsg-3)</dt> <dd lang='en'>Example files for ProbABEL</dd> <dt><a href='probalign' id='probalign'>probalign</a> (1.4-8)</dt> <dd lang='en'>multiple sequence alignment using partition function posterior probabilities</dd> <dt><a href='probcons' id='probcons'>probcons</a> (1.12-12)</dt> <dd lang='en'>PROBabilistic CONSistency-based multiple sequence alignment</dd> <dt><a href='probcons-extra' id='probcons-extra'>probcons-extra</a> (1.12-12)</dt> <dd lang='en'>Extra programs from the probcons package</dd> <dt><a href='proda' id='proda'>proda</a> (1.0-12)</dt> <dd lang='en'>multiple alignment of protein sequences</dd> <dt><a href='prodigal' id='prodigal'>prodigal</a> (1:2.6.3-4)</dt> <dd lang='en'>Microbial (bacterial and archaeal) gene finding program</dd> <dt><a href='profbval' id='profbval'>profbval</a> (1.0.22-6)</dt> <dd lang='en'>predictor of flexible/rigid protein residues from sequence</dd> <dt><a href='profisis' id='profisis'>profisis</a> (1.0.11-5)</dt> <dd lang='en'>prediction of protein-protein interaction sites from sequence</dd> <dt><a href='profnet-bval' id='profnet-bval'>profnet-bval</a> (1.0.22-6)</dt> <dd lang='en'>neural network architecture for profbval</dd> <dt><a href='profnet-chop' id='profnet-chop'>profnet-chop</a> (1.0.22-6)</dt> <dd lang='en'>neural network architecture for profchop</dd> <dt><a href='profnet-con' id='profnet-con'>profnet-con</a> (1.0.22-6)</dt> <dd lang='en'>neural network architecture for profcon</dd> <dt><a href='profnet-isis' id='profnet-isis'>profnet-isis</a> (1.0.22-6)</dt> <dd lang='en'>neural network architecture for profisis</dd> <dt><a href='profnet-md' id='profnet-md'>profnet-md</a> (1.0.22-6)</dt> <dd lang='en'>neural network architecture for metadisorder</dd> <dt><a href='profnet-norsnet' id='profnet-norsnet'>profnet-norsnet</a> (1.0.22-6)</dt> <dd lang='en'>neural network architecture for norsnet</dd> <dt><a href='profnet-prof' id='profnet-prof'>profnet-prof</a> (1.0.22-6)</dt> <dd lang='en'>neural network architecture for profacc</dd> <dt><a href='profnet-snapfun' id='profnet-snapfun'>profnet-snapfun</a> (1.0.22-6)</dt> <dd lang='en'>neural network architecture for snapfun</dd> <dt><a href='profphd' id='profphd'>profphd</a> (1.0.42-3)</dt> <dd lang='en'>secondary structure and solvent accessibility predictor</dd> <dt><a href='profphd-net' id='profphd-net'>profphd-net</a> (1.0.22-6)</dt> <dd lang='en'>neural network architecture for profphd</dd> <dt><a href='profphd-utils' id='profphd-utils'>profphd-utils</a> (1.0.10-5)</dt> <dd lang='en'>profphd helper utilities convert_seq and filter_hssp</dd> <dt><a href='proftmb' id='proftmb'>proftmb</a> (1.1.12-8)</dt> <dd lang='en'>per-residue prediction of bacterial transmembrane beta barrels</dd> <dt><a href='progressivemauve' id='progressivemauve'>progressivemauve</a> (1.2.0+4713+dfsg-4)</dt> <dd lang='en'>multiple genome alignment algorithms</dd> <dt><a href='proj-bin' id='proj-bin'>proj-bin</a> (5.2.0-1)</dt> <dd lang='en'>Cartographic projection library (tools)</dd> <dt><a href='proj-rdnap' id='proj-rdnap'>proj-rdnap</a> (2008-8) [non-free]</dt> <dd lang='en'>RDNAP grid correction files for PROJ</dd> <dt><a href='proteinortho' id='proteinortho'>proteinortho</a> (5.16.b+dfsg-1)</dt> <dd lang='en'>Detection of (Co-)orthologs in large-scale protein analysis</dd> <dt><a href='prottest' id='prottest'>prottest</a> (3.4.2+dfsg-3)</dt> <dd lang='en'>selection of best-fit models of protein evolution</dd> <dt><a href='pscan-chip' id='pscan-chip'>pscan-chip</a> (1.1-2)</dt> <dd lang='en'>ChIP-based identifcation of TF binding sites</dd> <dt><a href='pscan-chip-data' id='pscan-chip-data'>pscan-chip-data</a> (1.1-2)</dt> <dd lang='en'>auxiliary data for PScan-ChIP</dd> <dt><a href='pscan-tfbs' id='pscan-tfbs'>pscan-tfbs</a> (1.2.2-3)</dt> <dd lang='en'>search for transcription factor binding sites</dd> <dt><a href='psfex' id='psfex'>psfex</a> (3.17.1+dfsg-5)</dt> <dd lang='en'>Point Spread Function model extractor</dd> <dt><a href='psi3' id='psi3'>psi3</a> (3.4.0-6+b3)</dt> <dd lang='en'>Quantum Chemical Program Suite</dd> <dt><a href='psi4' id='psi4'>psi4</a> (1:1.2.1-2)</dt> <dd lang='en'>Quantum Chemical Program Suite</dd> <dt><a href='psi4-data' id='psi4-data'>psi4-data</a> (1:1.2.1-2)</dt> <dd lang='en'>Quantum Chemical Program Suite (data files)</dd> <dt><a href='psortb' id='psortb'>psortb</a> (3.0.6+dfsg-1+b1)</dt> <dd lang='en'>bacterial localization prediction tool</dd> <dt><a href='psychtoolbox-3-common' id='psychtoolbox-3-common'>psychtoolbox-3-common</a> (3.0.15.20190207.dfsg1-1)</dt> <dd lang='en'>toolbox for vision research -- arch/interpreter independent part</dd> <dt><a href='psychtoolbox-3-lib' id='psychtoolbox-3-lib'>psychtoolbox-3-lib</a> (3.0.15.20190207.dfsg1-1)</dt> <dd lang='en'>toolbox for vision research -- arch-specific parts</dd> <dt><a href='purify' id='purify'>purify</a> (2.0.0-4+b1)</dt> <dd lang='en'>Collection of routines for radio interferometric imaging</dd> <dt><a href='pyfai' id='pyfai'>pyfai</a> (0.17.0+dfsg1-3)</dt> <dd lang='en'>Fast Azimuthal Integration scripts</dd> <dt><a href='pyfr' id='pyfr'>pyfr</a> (1.5.0-3)</dt> <dd lang='en'>flux reconstruction in Python</dd> <dt><a href='pymca' id='pymca'>pymca</a> (5.4.3+dfsg-1)</dt> <dd lang='en'>Applications and toolkit for X-ray fluorescence analysis -- scripts</dd> <dt><a href='pymca-data' id='pymca-data'>pymca-data</a> (5.4.3+dfsg-1)</dt> <dd lang='en'>Architecture independent data files for PyMca</dd> <dt><a href='pymoctool' id='pymoctool'>pymoctool</a> (0.5.0-4)</dt> <dd lang='en'>Python Multi-Order Coverage maps tool for Virtual Observatory</dd> <dt><a href='pymol' id='pymol'>pymol</a> (2.2.0+dfsg-4)</dt> <dd lang='en'>Molecular Graphics System</dd> <dt><a href='pymol-data' id='pymol-data'>pymol-data</a> (2.2.0+dfsg-4)</dt> <dd lang='en'>data files for PyMOL</dd> <dt><a href='pysatellites' id='pysatellites'>pysatellites</a> (2.5-1)</dt> <dd lang='en'>simulates the launching of satellites</dd> <dt><a href='python-cyvcf2' id='python-cyvcf2'>python-cyvcf2</a> (0.10.4-1)</dt> <dd lang='en'>VCF parser based on htslib (Python 2)</dd> <dt><a href='python-drizzle-testdata' id='python-drizzle-testdata'>python-drizzle-testdata</a> (1.12-2)</dt> <dd lang='en'>Dithered image combination for Python (Test data)</dd> <dt><a href='python-pybigwig' id='python-pybigwig'>python-pybigwig</a> (0.3.12-1+b1)</dt> <dd lang='en'>Python 2 module for quick access to bigBed and bigWig files</dd> <dt><a href='python-pynlpl' id='python-pynlpl'>python-pynlpl</a> (1.1.2-1)</dt> <dd lang='en'>PyNLPl is a library for Natural Language Processing (Python 2 version)</dd> <dt><a href='python-shogun' id='python-shogun'>python-shogun</a> (3.2.0-5.2)</dt> <dd lang='en'>Large Scale Machine Learning Toolbox</dd> <dt><a href='python3-airr' id='python3-airr'>python3-airr</a> (1.2.1-2)</dt> <dd lang='en'>Data Representation Standard library for antibody and TCR sequences</dd> <dt><a href='python3-amp' id='python3-amp'>python3-amp</a> (0.6.1-1)</dt> <dd lang='en'>Atomistic Machine-learning Package (python 3)</dd> <dt><a href='python3-bcbio' id='python3-bcbio'>python3-bcbio</a> (1.1.2-3)</dt> <dd lang='en'>library for analysing high-throughput sequencing data</dd> <dt><a href='python3-cyvcf2' id='python3-cyvcf2'>python3-cyvcf2</a> (0.10.4-1)</dt> <dd lang='en'>VCF parser based on htslib (Python 3)</dd> <dt><a href='python3-gfapy' id='python3-gfapy'>python3-gfapy</a> (1.0.0+dfsg-3)</dt> <dd lang='en'>flexible and extensible software library for handling sequence graphs</dd> <dt><a href='python3-gffutils' id='python3-gffutils'>python3-gffutils</a> (0.9-1)</dt> <dd lang='en'>Work with GFF and GTF files in a flexible database framework</dd> <dt><a href='python3-keras' id='python3-keras'>python3-keras</a> (2.2.4-1)</dt> <dd lang='en'>deep learning framework running on Theano or TensorFlow</dd> <dt><a href='python3-pybel' id='python3-pybel'>python3-pybel</a> (0.12.1-1)</dt> <dd lang='en'>Biological Expression Language</dd> <dt><a href='python3-pybigwig' id='python3-pybigwig'>python3-pybigwig</a> (0.3.12-1+b1)</dt> <dd lang='en'>Python 3 module for quick access to bigBed and bigWig files</dd> <dt><a href='python3-pynlpl' id='python3-pynlpl'>python3-pynlpl</a> (1.1.2-1)</dt> <dd lang='en'>PyNLPl is a library for Natural Language Processing (Python 3 version)</dd> <dt><a href='pyzo' id='pyzo'>pyzo</a> (4.4.3-1.2)</dt> <dd lang='en'>interactive editor for scientific Python</dd> <dt><a href='qcumber' id='qcumber'>qcumber</a> (1.0.14+dfsg-1)</dt> <dd lang='en'>quality control of genomic sequences</dd> <dt><a href='qfits-tools' id='qfits-tools'>qfits-tools</a> (6.2.0-8+b2)</dt> <dd>работа с файлами FITS</dd> <dt><a href='qfitsview' id='qfitsview'>qfitsview</a> (3.3+p1+dfsg-2+b1)</dt> <dd lang='en'>FITS file viewer based on DPUSER</dd> <dt><a href='qgis' id='qgis'>qgis</a> (2.18.28+dfsg-2)</dt> <dd lang='en'>Geographic Information System (GIS)</dd> <dt><a href='qgis-api-doc' id='qgis-api-doc'>qgis-api-doc</a> (2.18.28+dfsg-2)</dt> <dd lang='en'>QGIS API documentation</dd> <dt><a href='qgis-common' id='qgis-common'>qgis-common</a> (2.18.28+dfsg-2)</dt> <dd lang='en'>QGIS - architecture-independent data</dd> <dt><a href='qgis-plugin-grass' id='qgis-plugin-grass'>qgis-plugin-grass</a> (2.18.28+dfsg-2)</dt> <dd lang='en'>GRASS plugin for QGIS</dd> <dt><a href='qgis-plugin-grass-common' id='qgis-plugin-grass-common'>qgis-plugin-grass-common</a> (2.18.28+dfsg-2)</dt> <dd lang='en'>GRASS plugin for QGIS - architecture-independent data</dd> <dt><a href='qgis-provider-grass' id='qgis-provider-grass'>qgis-provider-grass</a> (2.18.28+dfsg-2)</dt> <dd lang='en'>GRASS provider for QGIS</dd> <dt><a href='qgis-providers' id='qgis-providers'>qgis-providers</a> (2.18.28+dfsg-2)</dt> <dd lang='en'>collection of data providers to QGIS</dd> <dt><a href='qgis-providers-common' id='qgis-providers-common'>qgis-providers-common</a> (2.18.28+dfsg-2)</dt> <dd lang='en'>collection of data providers to QGIS - architecture-independent files</dd> <dt><a href='qgis-server' id='qgis-server'>qgis-server</a> (2.18.28+dfsg-2)</dt> <dd lang='en'>QGIS server providing various OGC services</dd> <dt><a href='qmapshack' id='qmapshack'>qmapshack</a> (1.12.3-1)</dt> <dd>создание карт (GeoTiff и векторных) для GPS и управление GPS-приёмниками</dd> <dt><a href='qmc' id='qmc'>qmc</a> (0.94-3.1)</dt> <dd lang='en'>Quine McClusky Simplification Tool</dd> <dt><a href='qnifti2dicom' id='qnifti2dicom'>qnifti2dicom</a> (0.4.11-1+b4)</dt> <dd lang='en'>convert 3D medical images to DICOM 2D series (gui)</dd> <dt><a href='qrisk2' id='qrisk2'>qrisk2</a> (0.1.20150729-4)</dt> <dd lang='en'>cardiovascular disease risk calculator</dd> <dt><a href='qthid-fcd-controller' id='qthid-fcd-controller'>qthid-fcd-controller</a> (4.1-3+b1)</dt> <dd lang='en'>Funcube Dongle controller</dd> <dt><a href='qtltools' id='qtltools'>qtltools</a> (1.1+dfsg-3+b1)</dt> <dd lang='en'>Tool set for molecular QTL discovery and analysis</dd> <dt><a href='quantum-espresso' id='quantum-espresso'>quantum-espresso</a> (6.3-4)</dt> <dd lang='en'>Electronic-Structure and Ab-Initio Molecular Dynamics Suite</dd> <dt><a href='quantum-espresso-data' id='quantum-espresso-data'>quantum-espresso-data</a> (6.3-4)</dt> <dd lang='en'>Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)</dd> <dt><a href='quorum' id='quorum'>quorum</a> (1.1.1-2)</dt> <dd lang='en'>QUality Optimized Reads of genomic sequences</dd> <dt><a href='qutemol' id='qutemol'>qutemol</a> (0.4.1~cvs20081111-12)</dt> <dd lang='en'>interactive visualization of macromolecules</dd> <dt><a href='r-cran-alakazam' id='r-cran-alakazam'>r-cran-alakazam</a> (0.2.11-1)</dt> <dd lang='en'>Immunoglobulin Clonal Lineage and Diversity Analysis</dd> <dt><a href='r-cran-sdmtools' id='r-cran-sdmtools'>r-cran-sdmtools</a> (1.1-221-1)</dt> <dd lang='en'>Species Distribution Modelling Tools</dd> <dt><a href='r-cran-shazam' id='r-cran-shazam'>r-cran-shazam</a> (0.1.11-1)</dt> <dd lang='en'>Immunoglobulin Somatic Hypermutation Analysis</dd> <dt><a href='r-cran-tigger' id='r-cran-tigger'>r-cran-tigger</a> (0.3.1-1)</dt> <dd lang='en'>Infers new Immunoglobulin alleles from Rep-Seq Data</dd> <dt><a href='racon' id='racon'>racon</a> (1.3.2-1+b1)</dt> <dd lang='en'>consensus module for raw de novo DNA assembly of long uncorrected reads</dd> <dt><a href='radiant' id='radiant'>radiant</a> (2.7+dfsg-2)</dt> <dd lang='en'>explore hierarchical metagenomic data with zoomable pie charts</dd> <dt><a href='rambo-k' id='rambo-k'>rambo-k</a> (1.21+dfsg-2)</dt> <dd lang='en'>Read Assignment Method Based On K-mers</dd> <dt><a href='rampler' id='rampler'>rampler</a> (1.1.0-1)</dt> <dd lang='en'>module for sampling genomic sequences</dd> <dt><a href='rapmap' id='rapmap'>rapmap</a> (0.12.0+dfsg-3+b1)</dt> <dd lang='en'>rapid sensitive and accurate DNA read mapping via quasi-mapping</dd> <dt><a href='rapmap-dev' id='rapmap-dev'>rapmap-dev</a> (0.12.0+dfsg-3)</dt> <dd lang='en'>rapmap - rapid sensitive and accurate DNA read mapping (some headers)</dd> <dt><a href='rapmap-example-data' id='rapmap-example-data'>rapmap-example-data</a> (0.12.0+dfsg-3)</dt> <dd lang='en'>example data for rapmap - rapid sensitive and accurate DNA read mapping</dd> <dt><a href='rasmol' id='rasmol'>rasmol</a> (2.7.6.0-1)</dt> <dd lang='en'>visualization of biological macromolecules</dd> <dt><a href='raster3d' id='raster3d'>raster3d</a> (3.0-3-5)</dt> <dd lang='en'>tools for generating images of proteins or other molecules</dd> <dt><a href='rate4site' id='rate4site'>rate4site</a> (3.0.0-6)</dt> <dd lang='en'>detector of conserved amino-acid sites</dd> <dt><a href='rawtran' id='rawtran'>rawtran</a> (1.1-1)</dt> <dd lang='en'>RAW photo to FITS converter</dd> <dt><a href='raxml' id='raxml'>raxml</a> (8.2.12+dfsg-1)</dt> <dd>синтез филогенетических деревьев по методу максимального правдоподобия</dd> <dt><a href='ray' id='ray'>ray</a> (2.3.1-6)</dt> <dd lang='en'>de novo genome assemblies of next-gen sequencing data</dd> <dt><a href='ray-extra' id='ray-extra'>ray-extra</a> (2.3.1-6)</dt> <dd lang='en'>Scripts and XSL sheets for post-processing for ray</dd> <dt><a href='rdkit-data' id='rdkit-data'>rdkit-data</a> (201809.1+dfsg-6)</dt> <dd lang='en'>Collection of cheminformatics and machine-learning software (data files)</dd> <dt><a href='rdp-classifier' id='rdp-classifier'>rdp-classifier</a> (2.10.2-4)</dt> <dd lang='en'>extensible sequence classifier for fungal lsu, bacterial and archaeal 16s</dd> <dt><a href='readseq' id='readseq'>readseq</a> (1-13)</dt> <dd lang='en'>Conversion between sequence formats</dd> <dt><a href='reapr' id='reapr'>reapr</a> (1.0.18+dfsg-4)</dt> <dd lang='en'>universal tool for genome assembly evaluation</dd> <dt><a href='refmac-dictionary' id='refmac-dictionary'>refmac-dictionary</a> (5.41-1)</dt> <dd lang='en'>dictionary for macromolecular refinement and model building</dd> <dt><a href='relion-bin' id='relion-bin'>relion-bin</a> (1.4+dfsg-4)</dt> <dd lang='en'>toolkit for 3D reconstructions in cryo-electron microscopy</dd> <dt><a href='relion-bin+gui' id='relion-bin+gui'>relion-bin+gui</a> (1.4+dfsg-4)</dt> <dd lang='en'>parallel toolkit for 3D reconstructions in cryo-electron microscopy</dd> <dt><a href='relion-bin+mpi' id='relion-bin+mpi'>relion-bin+mpi</a> (1.4+dfsg-4)</dt> <dd lang='en'>parallel toolkit for 3D reconstructions in cryo-electron microscopy</dd> <dt><a href='relion-bin+mpi+gui' id='relion-bin+mpi+gui'>relion-bin+mpi+gui</a> (1.4+dfsg-4)</dt> <dd lang='en'>parallel toolkit for 3D reconstructions in cryo-electron microscopy</dd> <dt><a href='repeatmasker-recon' id='repeatmasker-recon'>repeatmasker-recon</a> (1.08-4)</dt> <dd lang='en'>finds repeat families from biological sequences</dd> <dt><a href='reprof' id='reprof'>reprof</a> (1.0.1-6)</dt> <dd lang='en'>protein secondary structure and accessibility predictor</dd> <dt><a href='rna-star' id='rna-star'>rna-star</a> (2.7.0a+dfsg-1)</dt> <dd lang='en'>ultrafast universal RNA-seq aligner</dd> <dt><a href='rnahybrid' id='rnahybrid'>rnahybrid</a> (2.1.2-5)</dt> <dd lang='en'>Fast and effective prediction of microRNA/target duplexes</dd> <dt><a href='roary' id='roary'>roary</a> (3.12.0+dfsg-2)</dt> <dd lang='en'>high speed stand alone pan genome pipeline</dd> <dt><a href='roguenarok' id='roguenarok'>roguenarok</a> (1.0-3)</dt> <dd lang='en'>versatile and scalable algorithm for rogue taxon identification</dd> <dt><a href='rsem' id='rsem'>rsem</a> (1.3.1+dfsg-1)</dt> <dd lang='en'>RNA-Seq by Expectation-Maximization</dd> <dt><a href='rtax' id='rtax'>rtax</a> (0.984-6)</dt> <dd lang='en'>Classification of sequence reads of 16S ribosomal RNA gene</dd> <dt><a href='ruby-rgfa' id='ruby-rgfa'>ruby-rgfa</a> (1.3.1+dfsg-1)</dt> <dd lang='en'>parse, edit and write GFA format graphs in Ruby</dd> <dt><a href='runcircos-gui' id='runcircos-gui'>runcircos-gui</a> (0.0+git20180828.97703b9-1)</dt> <dd lang='en'>GUI tool to run circos</dd> <dt><a href='sac2mseed' id='sac2mseed'>sac2mseed</a> (1.12+ds1-3)</dt> <dd lang='en'>Convert SAC waveform data to MiniSEED</dd> <dt><a href='saga' id='saga'>saga</a> (2.3.1+dfsg-4+b1)</dt> <dd lang='en'>System for Automated Geoscientific Analyses</dd> <dt><a href='saga-common' id='saga-common'>saga-common</a> (2.3.1+dfsg-4)</dt> <dd lang='en'>SAGA GIS architecture independent files</dd> <dt><a href='saint' id='saint'>saint</a> (2.5.0+dfsg-3)</dt> <dd lang='en'>Significance Analysis of INTeractome</dd> <dt><a href='salmid' id='salmid'>salmid</a> (0.1.23-1)</dt> <dd lang='en'>rapid Kmer based Salmonella identifier from sequence data</dd> <dt><a href='salmon' id='salmon'>salmon</a> (0.12.0+ds1-1+b1)</dt> <dd lang='en'>wicked-fast transcript quantification from RNA-seq data</dd> <dt><a href='samblaster' id='samblaster'>samblaster</a> (0.1.24-2)</dt> <dd lang='en'>marks duplicates, extracts discordant/split reads</dd> <dt><a href='samtools' id='samtools'>samtools</a> (1.9-4)</dt> <dd lang='en'>processing sequence alignments in SAM, BAM and CRAM formats</dd> <dt><a href='samtools-test' id='samtools-test'>samtools-test</a> (1.9-4)</dt> <dd lang='en'>test files for the samtools package</dd> <dt><a href='saods9' id='saods9'>saods9</a> (8.0.1+repack-2)</dt> <dd lang='en'>Image display tool for astronomy</dd> <dt><a href='sasview' id='sasview'>sasview</a> (4.2.1-1)</dt> <dd lang='en'>Small Angle Scattering Analysis suite</dd> <dt><a href='sat4j' id='sat4j'>sat4j</a> (2.3.5-0.3)</dt> <dd>эффективная библиотека SAT-решателей на Java</dd> <dt><a href='savi' id='savi'>savi</a> (1.5.1-3)</dt> <dd lang='en'>satellite constellation visualisation</dd> <dt><a href='sbmltoolbox' id='sbmltoolbox'>sbmltoolbox</a> (4.1.0-4)</dt> <dd lang='en'>libsbml toolbox for octave and matlab</dd> <dt><a href='scamp' id='scamp'>scamp</a> (2.0.4+dfsg-1+b1)</dt> <dd lang='en'>Compute astrometric and photometric solutions</dd> <dt><a href='science-astronomy' id='science-astronomy'>science-astronomy</a> (1.10)</dt> <dd lang='en'>Debian Science Astronomy transitional package</dd> <dt><a href='science-astronomy-dev' id='science-astronomy-dev'>science-astronomy-dev</a> (1.10)</dt> <dd lang='en'>Debian Science Astronomy-dev transitional package</dd> <dt><a href='science-biology' id='science-biology'>science-biology</a> (1.10)</dt> <dd>пакеты Debian Science связанные с биологией</dd> <dt><a href='science-chemistry' id='science-chemistry'>science-chemistry</a> (1.10)</dt> <dd lang='en'>Debian Science Chemistry packages</dd> <dt><a href='science-config' id='science-config'>science-config</a> (1.10)</dt> <dd lang='en'>Debian Science Project config package</dd> <dt><a href='science-dataacquisition' id='science-dataacquisition'>science-dataacquisition</a> (1.10)</dt> <dd>сбор данных (Debian Science)</dd> <dt><a href='science-dataacquisition-dev' id='science-dataacquisition-dev'>science-dataacquisition-dev</a> (1.10)</dt> <dd lang='en'>Debian Science data acquisition development packages</dd> <dt><a href='science-distributedcomputing' id='science-distributedcomputing'>science-distributedcomputing</a> (1.10)</dt> <dd lang='en'>Debian Science Distributed Computing packages</dd> <dt><a href='science-economics' id='science-economics'>science-economics</a> (1.10)</dt> <dd lang='en'>Debian Science Economics packages</dd> <dt><a href='science-electronics' id='science-electronics'>science-electronics</a> (1.10)</dt> <dd lang='en'>Debian Science Electronics transitional package</dd> <dt><a href='science-electrophysiology' id='science-electrophysiology'>science-electrophysiology</a> (1.10)</dt> <dd lang='en'>Debian Science packages for Electrophysiology</dd> <dt><a href='science-engineering' id='science-engineering'>science-engineering</a> (1.10)</dt> <dd>научно-инженерные пакеты Debian</dd> <dt><a href='science-engineering-dev' id='science-engineering-dev'>science-engineering-dev</a> (1.10)</dt> <dd lang='en'>Debian Science Engineering-dev packages</dd> <dt><a href='science-financial' id='science-financial'>science-financial</a> (1.10)</dt> <dd lang='en'>Debian Science financial engineering and computational finance</dd> <dt><a href='science-geography' id='science-geography'>science-geography</a> (1.10)</dt> <dd lang='en'>Debian Science Geography packages</dd> <dt><a href='science-geometry' id='science-geometry'>science-geometry</a> (1.10)</dt> <dd lang='en'>Debian Science geometry packages</dd> <dt><a href='science-highenergy-physics' id='science-highenergy-physics'>science-highenergy-physics</a> (1.10)</dt> <dd lang='en'>Debian Science High Energy Physics packages</dd> <dt><a href='science-highenergy-physics-dev' id='science-highenergy-physics-dev'>science-highenergy-physics-dev</a> (1.10)</dt> <dd lang='en'>Debian Science High Energy Physics development packages</dd> <dt><a href='science-imageanalysis' id='science-imageanalysis'>science-imageanalysis</a> (1.10)</dt> <dd>анализ графических данных (Debian Science)</dd> <dt><a href='science-linguistics' id='science-linguistics'>science-linguistics</a> (1.10)</dt> <dd lang='en'>Debian Science Linguistics packages</dd> <dt><a href='science-logic' id='science-logic'>science-logic</a> (1.10)</dt> <dd lang='en'>Debian Science Logic packages</dd> <dt><a href='science-machine-learning' id='science-machine-learning'>science-machine-learning</a> (1.10)</dt> <dd lang='en'>Debian Science Machine Learning packages</dd> <dt><a href='science-mathematics' id='science-mathematics'>science-mathematics</a> (1.10)</dt> <dd lang='en'>Debian Science Mathematics packages</dd> <dt><a href='science-mathematics-dev' id='science-mathematics-dev'>science-mathematics-dev</a> (1.10)</dt> <dd lang='en'>Debian Science Mathematics-dev packages</dd> <dt><a href='science-meteorology' id='science-meteorology'>science-meteorology</a> (1.10)</dt> <dd>пакеты Debian Science по метеорологии</dd> <dt><a href='science-meteorology-dev' id='science-meteorology-dev'>science-meteorology-dev</a> (1.10)</dt> <dd lang='en'>Debian Science Meteorology-dev packages</dd> <dt><a href='science-nanoscale-physics' id='science-nanoscale-physics'>science-nanoscale-physics</a> (1.10)</dt> <dd lang='en'>Debian Science Nanoscale Physics packages</dd> <dt><a href='science-nanoscale-physics-dev' id='science-nanoscale-physics-dev'>science-nanoscale-physics-dev</a> (1.10)</dt> <dd lang='en'>Debian Science Nanoscale Physics development packages</dd> <dt><a href='science-neuroscience-cognitive' id='science-neuroscience-cognitive'>science-neuroscience-cognitive</a> (1.10)</dt> <dd lang='en'>Debian Science packages for Cognitive Neuroscience</dd> <dt><a href='science-neuroscience-modeling' id='science-neuroscience-modeling'>science-neuroscience-modeling</a> (1.10)</dt> <dd lang='en'>Debian Science packages for modeling of neural systems</dd> <dt><a href='science-numericalcomputation' id='science-numericalcomputation'>science-numericalcomputation</a> (1.10)</dt> <dd>программы для выполнения числовых вычислений (из Debian Science)</dd> <dt><a href='science-physics' id='science-physics'>science-physics</a> (1.10)</dt> <dd lang='en'>Debian Science Physics packages</dd> <dt><a href='science-physics-dev' id='science-physics-dev'>science-physics-dev</a> (1.10)</dt> <dd lang='en'>Debian Science Physics-dev packages</dd> <dt><a href='science-presentation' id='science-presentation'>science-presentation</a> (1.10)</dt> <dd lang='en'>Debian Science generic tools for presentations</dd> <dt><a href='science-psychophysics' id='science-psychophysics'>science-psychophysics</a> (1.10)</dt> <dd lang='en'>Debian Science packages for Psychophysics</dd> <dt><a href='science-robotics' id='science-robotics'>science-robotics</a> (1.10)</dt> <dd lang='en'>Debian Robotics packages</dd> <dt><a href='science-robotics-dev' id='science-robotics-dev'>science-robotics-dev</a> (1.10)</dt> <dd lang='en'>Debian Robotics development packages</dd> <dt><a href='science-simulations' id='science-simulations'>science-simulations</a> (1.10)</dt> <dd lang='en'>Debian Science Simulation packages</dd> <dt><a href='science-statistics' id='science-statistics'>science-statistics</a> (1.10)</dt> <dd lang='en'>Debian Science Statistics packages</dd> <dt><a href='science-tasks' id='science-tasks'>science-tasks</a> (1.10)</dt> <dd lang='en'>Debian Science tasks for tasksel</dd> <dt><a href='science-typesetting' id='science-typesetting'>science-typesetting</a> (1.10)</dt> <dd lang='en'>Debian Science typesetting packages</dd> <dt><a href='science-viewing' id='science-viewing'>science-viewing</a> (1.10)</dt> <dd lang='en'>Debian Science data visualisation packages</dd> <dt><a href='science-viewing-dev' id='science-viewing-dev'>science-viewing-dev</a> (1.10)</dt> <dd lang='en'>Debian Science development of visualisation applications</dd> <dt><a href='scoary' id='scoary'>scoary</a> (1.6.16-1)</dt> <dd lang='en'>pangenome-wide association studies</dd> <dt><a href='scram' id='scram'>scram</a> (0.16.2-1+b1)</dt> <dd lang='en'>Probabilistic Risk Analysis Tool</dd> <dt><a href='scram-gui' id='scram-gui'>scram-gui</a> (0.16.2-1+b1)</dt> <dd lang='en'>SCRAM GUI front-end</dd> <dt><a href='scrm' id='scrm'>scrm</a> (1.7.3-1)</dt> <dd lang='en'>simulator of evolution of genetic sequences</dd> <dt><a href='sctk' id='sctk'>sctk</a> (2.4.10-20151007-1312Z+dfsg2-3.1~deb10u1)</dt> <dd lang='en'>speech recognition scoring toolkit</dd> <dt><a href='scythe' id='scythe'>scythe</a> (0.994+git20141017.20d3cff-1)</dt> <dd lang='en'>Bayesian adaptor trimmer for sequencing reads</dd> <dt><a href='sdaps' id='sdaps'>sdaps</a> (1.2.1-2)</dt> <dd lang='en'>scripts for data acquisition with paper-based surveys</dd> <dt><a href='sdrangelove' id='sdrangelove'>sdrangelove</a> (0.0.1.20150707-2+b6)</dt> <dd lang='en'>Osmocom Software Defined Radio</dd> <dt><a href='seaview' id='seaview'>seaview</a> (1:4.7-1)</dt> <dd lang='en'>Multiplatform interface for sequence alignment and phylogeny</dd> <dt><a href='seer' id='seer'>seer</a> (1.1.4-2+b2)</dt> <dd lang='en'>genomic sequence element (kmer) enrichment analysis</dd> <dt><a href='segemehl' id='segemehl'>segemehl</a> (0.3.4-1)</dt> <dd lang='en'>short read mapping with gaps</dd> <dt><a href='segyio-bin' id='segyio-bin'>segyio-bin</a> (1.8.3-1)</dt> <dd lang='en'>SEG-Y read/write library for seismic processing (shell utilities)</dd> <dt><a href='seq-gen' id='seq-gen'>seq-gen</a> (1.3.4-2) [non-free]</dt> <dd lang='en'>simulate the evolution of nucleotide or amino acid sequences</dd> <dt><a href='seqan-apps' id='seqan-apps'>seqan-apps</a> (2.4.0+dfsg-11)</dt> <dd lang='en'>C++ library for the analysis of biological sequences</dd> <dt><a href='seqmagick' id='seqmagick'>seqmagick</a> (0.7.0-1)</dt> <dd lang='en'>imagemagick-like frontend to Biopython SeqIO</dd> <dt><a href='seqprep' id='seqprep'>seqprep</a> (1.3.2-3)</dt> <dd lang='en'>stripping adaptors and/or merging paired reads of DNA sequences with overlap</dd> <dt><a href='seqprep-data' id='seqprep-data'>seqprep-data</a> (1.3.2-3)</dt> <dd lang='en'>example data set for seqprep - only used for testing</dd> <dt><a href='seqsero' id='seqsero'>seqsero</a> (1.0.1+dfsg-1)</dt> <dd lang='en'>Salmonella serotyping from genome sequencing data</dd> <dt><a href='seqtk' id='seqtk'>seqtk</a> (1.3-1)</dt> <dd lang='en'>Fast and lightweight tool for processing sequences in the FASTA or FASTQ format</dd> <dt><a href='sextractor' id='sextractor'>sextractor</a> (2.19.5+dfsg-6)</dt> <dd lang='en'>Source extractor for astronomical images</dd> <dt><a href='sga' id='sga'>sga</a> (0.10.15-4)</dt> <dd lang='en'>de novo genome assembler that uses string graphs</dd> <dt><a href='shelxle' id='shelxle'>shelxle</a> (1.0.952-1)</dt> <dd lang='en'>graphical user interface for SHELXL</dd> <dt><a href='shogun-cmdline-static' id='shogun-cmdline-static'>shogun-cmdline-static</a> (3.2.0-8+b1)</dt> <dd lang='en'>Large Scale Machine Learning Toolbox</dd> <dt><a href='sibsim4' id='sibsim4'>sibsim4</a> (0.20-4)</dt> <dd lang='en'>align expressed RNA sequences on a DNA template</dd> <dt><a href='sickle' id='sickle'>sickle</a> (1.33+git20150314.f3d6ae3-1)</dt> <dd lang='en'>windowed adaptive trimming tool for FASTQ files using quality</dd> <dt><a href='sift' id='sift'>sift</a> (4.0.3b-6) [non-free]</dt> <dd lang='en'>predicts if a substitution in a protein has a phenotypic effect</dd> <dt><a href='sigma-align' id='sigma-align'>sigma-align</a> (1.1.3-6)</dt> <dd lang='en'>Simple greedy multiple alignment of non-coding DNA sequences</dd> <dt><a href='sigviewer' id='sigviewer'>sigviewer</a> (0.6.2-2)</dt> <dd lang='en'>GUI viewer for biosignals such as EEG, EMG, and ECG</dd> <dt><a href='silx' id='silx'>silx</a> (0.9.0+dfsg-3+deb10u1)</dt> <dd lang='en'>Toolbox for X-Ray data analysis - Executables</dd> <dt><a href='sim4' id='sim4'>sim4</a> (0.0.20121010-5)</dt> <dd lang='en'>tool for aligning cDNA and genomic DNA</dd> <dt><a href='sim4db' id='sim4db'>sim4db</a> (0~20150903+r2013-6)</dt> <dd lang='en'>batch spliced alignment of cDNA sequences to a target genome</dd> <dt><a href='simgrid-java' id='simgrid-java'>simgrid-java</a> (3.21+dfsg-4)</dt> <dd lang='en'>Java bindings for the SimGrid Toolkit</dd> <dt><a href='siril' id='siril'>siril</a> (0.9.10-2)</dt> <dd lang='en'>astronomical image processing tool</dd> <dt><a href='skycat' id='skycat'>skycat</a> (3.1.2+starlink1~b+dfsg-5+b1)</dt> <dd lang='en'>Image visualization and access to catalogs and data for astronomy</dd> <dt><a href='slang-xfig' id='slang-xfig'>slang-xfig</a> (0.2.0~.117-2)</dt> <dd lang='en'>produce plots and drawings through Xfig's fig2dev in S-Lang</dd> <dt><a href='sleepyhead' id='sleepyhead'>sleepyhead</a> (1.0.0-beta-2+dfsg-6)</dt> <dd lang='en'>Sleep tracking software with a focus on monitoring CPAP treatment</dd> <dt><a href='smalr' id='smalr'>smalr</a> (1.1+dfsg-2)</dt> <dd lang='en'>interrogation of the methylation status of nucleotide sequencing reads</dd> <dt><a href='smalt' id='smalt'>smalt</a> (0.7.6-8)</dt> <dd lang='en'>Sequence Mapping and Alignment Tool</dd> <dt><a href='smalt-examples' id='smalt-examples'>smalt-examples</a> (0.7.6-8)</dt> <dd lang='en'>Sequence Mapping and Alignment Tool (examples)</dd> <dt><a href='smithwaterman' id='smithwaterman'>smithwaterman</a> (0.0+git20160702.2610e25-7)</dt> <dd lang='en'>determine similar regions between two strings or genomic sequences</dd> <dt><a href='snakemake' id='snakemake'>snakemake</a> (5.4.0-1)</dt> <dd lang='en'>pythonic workflow management system</dd> <dt><a href='snap' id='snap'>snap</a> (2013-11-29-9)</dt> <dd lang='en'>location of genes from DNA sequence with hidden markov model</dd> <dt><a href='snap-aligner' id='snap-aligner'>snap-aligner</a> (1.0~beta.18+dfsg-3)</dt> <dd lang='en'>Scalable Nucleotide Alignment Program</dd> <dt><a href='snaphu' id='snaphu'>snaphu</a> (1.4.2-7) [non-free]</dt> <dd lang='en'>Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping</dd> <dt><a href='sniffles' id='sniffles'>sniffles</a> (1.0.11+ds-1)</dt> <dd lang='en'>structural variation caller using third-generation sequencing</dd> <dt><a href='snp-sites' id='snp-sites'>snp-sites</a> (2.4.1-1)</dt> <dd lang='en'>Binary code for the package snp-sites</dd> <dt><a href='snpomatic' id='snpomatic'>snpomatic</a> (1.0-4)</dt> <dd lang='en'>fast, stringent short-read mapping software</dd> <dt><a href='soapaligner' id='soapaligner'>soapaligner</a> (2.20-3)</dt> <dd lang='en'>aligner of short reads of next generation sequencers</dd> <dt><a href='soapdenovo' id='soapdenovo'>soapdenovo</a> (1.05-5)</dt> <dd lang='en'>short-read assembly method to build de novo draft assembly</dd> <dt><a href='soapdenovo2' id='soapdenovo2'>soapdenovo2</a> (241+dfsg-3)</dt> <dd lang='en'>short-read assembly method to build de novo draft assembly</dd> <dt><a href='soapsnp' id='soapsnp'>soapsnp</a> (1.03-3)</dt> <dd lang='en'>resequencing utility that can assemble consensus sequence of genomes</dd> <dt><a href='solvate' id='solvate'>solvate</a> (1.0-2) [non-free]</dt> <dd lang='en'>arranges water molecules around protein structures</dd> <dt><a href='solvate-doc' id='solvate-doc'>solvate-doc</a> (1.0-2) [non-free]</dt> <dd lang='en'>Documentation for solvate</dd> <dt><a href='sortmerna' id='sortmerna'>sortmerna</a> (2.1-3)</dt> <dd lang='en'>tool for filtering, mapping and OTU-picking NGS reads</dd> <dt><a href='spaced' id='spaced'>spaced</a> (1.2.0-201605+dfsg-1)</dt> <dd lang='en'>alignment-free sequence comparison using spaced words</dd> <dt><a href='spades' id='spades'>spades</a> (3.13.0+dfsg2-2)</dt> <dd lang='en'>genome assembler for single-cell and isolates data sets</dd> <dt><a href='spatialite-bin' id='spatialite-bin'>spatialite-bin</a> (4.3.0-2+b4)</dt> <dd lang='en'>Geospatial extension for SQLite - tools</dd> <dt><a href='spd' id='spd'>spd</a> (1.3.0-1+b4)</dt> <dd lang='en'>Synchrotron image corrections and azimuthal integration</dd> <dt><a href='splash' id='splash'>splash</a> (2.8.0-1+b1)</dt> <dd lang='en'>Visualisation tool for Smoothed Particle Hydrodynamics simulation</dd> <dt><a href='spoa' id='spoa'>spoa</a> (1.1.5-1)</dt> <dd lang='en'>SIMD partial order alignment tool</dd> <dt><a href='sprai' id='sprai'>sprai</a> (0.9.9.23+dfsg-2)</dt> <dd lang='en'>single-pass sequencing read accuracy improver</dd> <dt><a href='spread-phy' id='spread-phy'>spread-phy</a> (1.0.7+dfsg-2)</dt> <dd lang='en'>analyze and visualize phylogeographic reconstructions</dd> <dt><a href='squizz' id='squizz'>squizz</a> (0.99d+dfsg-2)</dt> <dd lang='en'>Converter for genetic sequences and alignments</dd> <dt><a href='sra-toolkit' id='sra-toolkit'>sra-toolkit</a> (2.9.3+dfsg-1+b1)</dt> <dd lang='en'>utilities for the NCBI Sequence Read Archive</dd> <dt><a href='srst2' id='srst2'>srst2</a> (0.2.0-6)</dt> <dd lang='en'>Short Read Sequence Typing for Bacterial Pathogens</dd> <dt><a href='ssake' id='ssake'>ssake</a> (4.0-2)</dt> <dd lang='en'>genomics application for assembling millions of very short DNA sequences</dd> <dt><a href='ssake-examples' id='ssake-examples'>ssake-examples</a> (4.0-2)</dt> <dd lang='en'>example data for SSAKE, a genomic assembler of short reads</dd> <dt><a href='sspace' id='sspace'>sspace</a> (2.1.1+dfsg-4)</dt> <dd lang='en'>scaffolding pre-assembled contigs after extension</dd> <dt><a href='ssw-align' id='ssw-align'>ssw-align</a> (1.1-2)</dt> <dd lang='en'>Smith-Waterman aligner based on libssw</dd> <dt><a href='stacks' id='stacks'>stacks</a> (2.2+dfsg-1)</dt> <dd lang='en'>pipeline for building loci from short-read DNA sequences</dd> <dt><a href='stacks-web' id='stacks-web'>stacks-web</a> (2.2+dfsg-1)</dt> <dd lang='en'>web interface for displaying loci from short-read sequences</dd> <dt><a href='staden' id='staden'>staden</a> (2.0.0+b11-4)</dt> <dd lang='en'>DNA sequence assembly (Gap4/Gap5), editing and analysis tools</dd> <dt><a href='staden-common' id='staden-common'>staden-common</a> (2.0.0+b11-4)</dt> <dd lang='en'>Architecture independent files for Staden</dd> <dt><a href='staden-io-lib-examples' id='staden-io-lib-examples'>staden-io-lib-examples</a> (1.14.11-6)</dt> <dd lang='en'>programs for manipulating DNA sequencing files (usage examples)</dd> <dt><a href='staden-io-lib-utils' id='staden-io-lib-utils'>staden-io-lib-utils</a> (1.14.11-6)</dt> <dd lang='en'>programs for manipulating DNA sequencing files</dd> <dt><a href='stardata-common' id='stardata-common'>stardata-common</a> (0.8+b1)</dt> <dd lang='en'>Common framework to manage astronomy packages</dd> <dt><a href='starplot' id='starplot'>starplot</a> (0.95.5-8.3)</dt> <dd lang='en'>3-dimensional perspective star map viewer</dd> <dt><a href='starpu-contrib-examples' id='starpu-contrib-examples'>starpu-contrib-examples</a> (1.2.6+dfsg-6) [contrib]</dt> <dd lang='en'>Task scheduler for heterogeneous multicore machines - exs</dd> <dt><a href='starpu-examples' id='starpu-examples'>starpu-examples</a> (1.2.6+dfsg-7)</dt> <dd lang='en'>Task scheduler for heterogeneous multicore machines - exs</dd> <dt><a href='stellarium' id='stellarium'>stellarium</a> (0.18.3-1)</dt> <dd lang='en'>real-time photo-realistic sky generator</dd> <dt><a href='stellarium-data' id='stellarium-data'>stellarium-data</a> (0.18.3-1)</dt> <dd lang='en'>Stellarium data files</dd> <dt><a href='step' id='step'>step</a> (4:18.08.1-1+b1)</dt> <dd lang='en'>interactive physical simulator for KDE</dd> <dt><a href='stiff' id='stiff'>stiff</a> (2.4.0-3)</dt> <dd lang='en'>convert scientific FITS images to the TIFF format</dd> <dt><a href='stilts' id='stilts'>stilts</a> (3.1.5-1)</dt> <dd lang='en'>Starlink Tables Infrastructure Library Tool Set</dd> <dt><a href='stimfit' id='stimfit'>stimfit</a> (0.15.8-1+b1)</dt> <dd lang='en'>Program for viewing and analyzing electrophysiological data</dd> <dt><a href='subread' id='subread'>subread</a> (1.6.3+dfsg-1)</dt> <dd lang='en'>toolkit for processing next-gen sequencing data</dd> <dt><a href='subread-data' id='subread-data'>subread-data</a> (1.6.3+dfsg-1)</dt> <dd lang='en'>data files for subread package</dd> <dt><a href='suitename' id='suitename'>suitename</a> (0.3.070628-2)</dt> <dd lang='en'>categorize each suite in an RNA backbone</dd> <dt><a href='sumaclust' id='sumaclust'>sumaclust</a> (1.0.31-2)</dt> <dd lang='en'>fast and exact clustering of genomic sequences</dd> <dt><a href='sumatra' id='sumatra'>sumatra</a> (1.0.31-2)</dt> <dd lang='en'>fast and exact comparison and clustering of sequences</dd> <dt><a href='sumo' id='sumo'>sumo</a> (1.1.0+dfsg1-1)</dt> <dd lang='en'>Simulation of Urban MObility (SUMO)</dd> <dt><a href='surankco' id='surankco'>surankco</a> (0.0.r5+dfsg-2)</dt> <dd lang='en'>Supervised Ranking of Contigs in de novo Assemblies</dd> <dt><a href='survex' id='survex'>survex</a> (1.2.38-1)</dt> <dd lang='en'>cave surveying and mapping software</dd> <dt><a href='survex-aven' id='survex-aven'>survex-aven</a> (1.2.38-1)</dt> <dd lang='en'>sophisticated cave survey viewer for Survex</dd> <dt><a href='swarm' id='swarm'>swarm</a> (2.2.2+dfsg-2)</dt> <dd lang='en'>robust and fast clustering method for amplicon-based studies</dd> <dt><a href='swarp' id='swarp'>swarp</a> (2.38.0+dfsg-4)</dt> <dd lang='en'>Resample and co-add together FITS images</dd> <dt><a href='swarp'>swarp</a></dt><dd>виртуальный пакет, предоставляемый <a href='../suckless-tools'>suckless-tools</a></dd> <dt><a href='swe-basic-data' id='swe-basic-data'>swe-basic-data</a> (1.80.00.0002-1)</dt> <dd lang='en'>basic data files for the libswe package</dd> <dt><a href='swe-standard-data' id='swe-standard-data'>swe-standard-data</a> (00004-1)</dt> <dd lang='en'>standard data for the Swiss Ephemeris</dd> <dt><a href='sweed' id='sweed'>sweed</a> (3.2.1+dfsg-1)</dt> <dd lang='en'>assessment of SNPs for their evolutionary advantage</dd> <dt><a href='syrthes' id='syrthes'>syrthes</a> (4.3.0-dfsg1-3)</dt> <dd>моделирование переходных тепловых процессов в сложных однородных телах</dd> <dt><a href='syrthes-gui' id='syrthes-gui'>syrthes-gui</a> (4.3.0-dfsg1-3)</dt> <dd lang='en'>Transient thermal simulations in complex solid geometries - GUI</dd> <dt><a href='syrthes-tests' id='syrthes-tests'>syrthes-tests</a> (4.3.0-dfsg1-3)</dt> <dd lang='en'>Test cases for SYRTHES</dd> <dt><a href='syrthes-tools' id='syrthes-tools'>syrthes-tools</a> (4.3.0-dfsg1-3)</dt> <dd lang='en'>Transient thermal simulations in complex solid geometries - tools</dd> <dt><a href='t-coffee' id='t-coffee'>t-coffee</a> (12.00.7fb08c2-4)</dt> <dd lang='en'>Multiple Sequence Alignment</dd> <dt><a href='t-coffee-examples' id='t-coffee-examples'>t-coffee-examples</a> (12.00.7fb08c2-4)</dt> <dd lang='en'>annotated examples for the use of T-Coffee</dd> <dt><a href='tabix' id='tabix'>tabix</a> (1.9-12~deb10u1)</dt> <dd lang='en'>generic indexer for TAB-delimited genome position files</dd> <dt><a href='tandem-mass' id='tandem-mass'>tandem-mass</a> (1:201702011-1)</dt> <dd lang='en'>mass spectrometry software for protein identification</dd> <dt><a href='tantan' id='tantan'>tantan</a> (22-1)</dt> <dd lang='en'>low complexity and tandem repeat masker for biosequences</dd> <dt><a href='tcliis' id='tcliis'>tcliis</a> (8.0.1+repack-2)</dt> <dd lang='en'>Tcl IIS protocol package</dd> <dt><a href='terraintool' id='terraintool'>terraintool</a> (1.13-2)</dt> <dd lang='en'>Generates survex format terrain models from SRTM and ASTER data</dd> <dt><a href='therion' id='therion'>therion</a> (5.4.3ds1-6)</dt> <dd lang='en'>Cave surveying - 2D and 3D drawing software</dd> <dt><a href='therion-viewer' id='therion-viewer'>therion-viewer</a> (5.4.3ds1-6)</dt> <dd lang='en'>Cave surveying - 3D viewer for therion models</dd> <dt><a href='theseus' id='theseus'>theseus</a> (3.3.0-8)</dt> <dd lang='en'>superimpose macromolecules using maximum likelihood</dd> <dt><a href='theseus-examples' id='theseus-examples'>theseus-examples</a> (3.3.0-8)</dt> <dd lang='en'>superimpose macromolecules using maximum likelihood (examples)</dd> <dt><a href='tigr-glimmer' id='tigr-glimmer'>tigr-glimmer</a> (3.02b-2)</dt> <dd lang='en'>Gene detection in archea and bacteria</dd> <dt><a href='timbl' id='timbl'>timbl</a> (6.4.13-1)</dt> <dd lang='en'>Tilburg Memory Based Learner</dd> <dt><a href='timblserver' id='timblserver'>timblserver</a> (1.12-1)</dt> <dd lang='en'>Server extensions for Timbl</dd> <dt><a href='tksao' id='tksao'>tksao</a> (8.0.1+repack-2)</dt> <dd lang='en'>Tk widgets for astronomical imaging and data visualization</dd> <dt><a href='tm-align' id='tm-align'>tm-align</a> (20170708+dfsg-2)</dt> <dd lang='en'>structural alignment of proteins</dd> <dt><a href='tnseq-transit' id='tnseq-transit'>tnseq-transit</a> (2.3.4-1)</dt> <dd lang='en'>statistical calculations of essentiality of genes or genomic regions</dd> <dt><a href='topcat' id='topcat'>topcat</a> (4.6.2-1)</dt> <dd lang='en'>Tool for OPerations on Catalogues And Tables</dd> <dt><a href='tophat' id='tophat'>tophat</a> (2.1.1+dfsg1-2+b1)</dt> <dd lang='en'>fast splice junction mapper for RNA-Seq reads</dd> <dt><a href='topp' id='topp'>topp</a> (2.4.0-real-1)</dt> <dd lang='en'>set of programs implementing The OpenMS Proteomic Pipeline</dd> <dt><a href='toppred' id='toppred'>toppred</a> (1.10-7)</dt> <dd lang='en'>transmembrane topology prediction</dd> <dt><a href='toulbar2' id='toulbar2'>toulbar2</a> (1.0.0+dfsg3-2)</dt> <dd lang='en'>Exact combinatorial optimization for Graphical Models</dd> <dt><a href='toulbar2-doc' id='toulbar2-doc'>toulbar2-doc</a> (1.0.0+dfsg3-2)</dt> <dd lang='en'>Exact combinatorial optimization for Graphical Models - documentation</dd> <dt><a href='trace2dbest' id='trace2dbest'>trace2dbest</a> (3.0.1-1)</dt> <dd lang='en'>bulk submission of chromatogram data to dbEST</dd> <dt><a href='trace2dbest-doc' id='trace2dbest-doc'>trace2dbest-doc</a> (3.0.1-1)</dt> <dd lang='en'>Documentation and sample files for trace2dbest</dd> <dt><a href='tracetuner' id='tracetuner'>tracetuner</a> (3.0.6~beta+dfsg-1)</dt> <dd lang='en'>interpretation of DNA Sanger sequencing data</dd> <dt><a href='transcalc' id='transcalc'>transcalc</a> (0.14-6)</dt> <dd lang='en'>microwave and RF transmission line calculator</dd> <dt><a href='transdecoder' id='transdecoder'>transdecoder</a> (5.0.1-2)</dt> <dd lang='en'>find coding regions within RNA transcript sequences</dd> <dt><a href='transrate-tools' id='transrate-tools'>transrate-tools</a> (1.0.0-2)</dt> <dd lang='en'>helper for transrate</dd> <dt><a href='transtermhp' id='transtermhp'>transtermhp</a> (2.09-4)</dt> <dd lang='en'>find rho-independent transcription terminators in bacterial genomes</dd> <dt><a href='travis' id='travis'>travis</a> (190101-1)</dt> <dd lang='en'>trajectory analyzer and visualizer</dd> <dt><a href='tree-ppuzzle' id='tree-ppuzzle'>tree-ppuzzle</a> (5.2-11)</dt> <dd lang='en'>Parallelized reconstruction of phylogenetic trees by maximum likelihood</dd> <dt><a href='tree-puzzle' id='tree-puzzle'>tree-puzzle</a> (5.2-11)</dt> <dd lang='en'>Reconstruction of phylogenetic trees by maximum likelihood</dd> <dt><a href='treeview' id='treeview'>treeview</a> (1.1.6.4+dfsg1-4)</dt> <dd lang='en'>Java re-implementation of Michael Eisen's TreeView</dd> <dt><a href='treeviewx' id='treeviewx'>treeviewx</a> (0.5.1+git20100823.7e4d0e9-1)</dt> <dd lang='en'>Displays and prints phylogenetic trees</dd> <dt><a href='triangle-bin' id='triangle-bin'>triangle-bin</a> (1.6-2) [non-free]</dt> <dd lang='en'>High-quality 2-D mesh generator binary programs</dd> <dt><a href='trimmomatic' id='trimmomatic'>trimmomatic</a> (0.38+dfsg-1)</dt> <dd lang='en'>flexible read trimming tool for Illumina NGS data</dd> <dt><a href='trinityrnaseq' id='trinityrnaseq'>trinityrnaseq</a> (2.6.6+dfsg-6)</dt> <dd lang='en'>RNA-Seq De novo Assembly</dd> <dt><a href='trinityrnaseq-examples' id='trinityrnaseq-examples'>trinityrnaseq-examples</a> (2.6.6+dfsg-6)</dt> <dd lang='en'>RNA-Seq De novo Assembly common example and testing files</dd> <dt><a href='trnascan-se' id='trnascan-se'>trnascan-se</a> (2.0.0-3) [non-free]</dt> <dd lang='en'>detection of transfer RNA genes in genomic sequence</dd> <dt><a href='trnascan-se-common' id='trnascan-se-common'>trnascan-se-common</a> (2.0.0-3) [non-free]</dt> <dd lang='en'>detection of transfer RNA genes in genomic sequence (common files)</dd> <dt><a href='tunnelx' id='tunnelx'>tunnelx</a> (20170928-2)</dt> <dd lang='en'>Cave Survey drawing software</dd> <dt><a href='tvc' id='tvc'>tvc</a> (5.0.3+git20151221.80e144e+dfsg-2)</dt> <dd lang='en'>genetic variant caller for Ion Torrent sequencing platforms</dd> <dt><a href='twms' id='twms'>twms</a> (0.07z-1)</dt> <dd lang='en'>tiny web map service</dd> <dt><a href='ubertooth' id='ubertooth'>ubertooth</a> (2018.12.R1-2)</dt> <dd lang='en'>2.4 GHz wireless development platform for Bluetooth experimentation</dd> <dt><a href='ubertooth-firmware' id='ubertooth-firmware'>ubertooth-firmware</a> (2018.12.R1-2)</dt> <dd lang='en'>Firmware for Ubertooth</dd> <dt><a href='ubertooth-firmware-source' id='ubertooth-firmware-source'>ubertooth-firmware-source</a> (2018.12.R1-2)</dt> <dd lang='en'>Source code for the Ubertooth firmware</dd> <dt><a href='uc-echo' id='uc-echo'>uc-echo</a> (1.12-11)</dt> <dd lang='en'>error correction algorithm designed for short-reads from NGS</dd> <dt><a href='ucto' id='ucto'>ucto</a> (0.14-2)</dt> <dd lang='en'>Unicode Tokenizer</dd> <dt><a href='uctodata' id='uctodata'>uctodata</a> (0.8-2)</dt> <dd lang='en'>Data files for Ucto</dd> <dt><a href='uhd-host' id='uhd-host'>uhd-host</a> (3.13.1.0-3)</dt> <dd lang='en'>universal hardware driver for Ettus Research products - host apps</dd> <dt><a href='unanimity' id='unanimity'>unanimity</a> (3.3.0+dfsg-2.1)</dt> <dd lang='en'>generate and process accurate consensus nucleotide sequences</dd> <dt><a href='unicycler' id='unicycler'>unicycler</a> (0.4.7+dfsg-2)</dt> <dd lang='en'>hybrid assembly pipeline for bacterial genomes</dd> <dt><a href='unicycler-data' id='unicycler-data'>unicycler-data</a> (0.4.7+dfsg-2)</dt> <dd lang='en'>hybrid assembly pipeline for bacterial genomes (data package)</dd> <dt><a href='units-filter' id='units-filter'>units-filter</a> (3.9-1)</dt> <dd lang='en'>Parser for expressions concerning physical values</dd> <dt><a href='varna' id='varna'>varna</a> (3-93+ds-2)</dt> <dd lang='en'>Visualization Applet for RNA</dd> <dt><a href='varscan' id='varscan'>varscan</a> (2.4.3+dfsg-3) [non-free]</dt> <dd lang='en'>variant detection in next-generation sequencing data</dd> <dt><a href='vcftools' id='vcftools'>vcftools</a> (0.1.16-1)</dt> <dd lang='en'>Collection of tools to work with VCF files</dd> <dt><a href='velvet' id='velvet'>velvet</a> (1.2.10+dfsg1-5)</dt> <dd lang='en'>Nucleic acid sequence assembler for very short reads</dd> <dt><a href='velvet-example' id='velvet-example'>velvet-example</a> (1.2.10+dfsg1-5)</dt> <dd lang='en'>Example data for the Velvet sequence assembler</dd> <dt><a href='velvet-long' id='velvet-long'>velvet-long</a> (1.2.10+dfsg1-5)</dt> <dd lang='en'>Nucleic acid sequence assembler for very short reads, long version</dd> <dt><a href='velvet-tests' id='velvet-tests'>velvet-tests</a> (1.2.10+dfsg1-5)</dt> <dd lang='en'>Test data for the Velvet sequence assembler</dd> <dt><a href='velvetoptimiser' id='velvetoptimiser'>velvetoptimiser</a> (2.2.6-2)</dt> <dd lang='en'>automatically optimise Velvet do novo assembly parameters</dd> <dt><a href='viewmol' id='viewmol'>viewmol</a> (2.4.1-25)</dt> <dd lang='en'>graphical front end for computational chemistry programs</dd> <dt><a href='visp-images-data' id='visp-images-data'>visp-images-data</a> (3.2.0-1)</dt> <dd lang='en'>visual servoing library - dataset reference files</dd> <dt><a href='vistrails' id='vistrails'>vistrails</a> (2.2.4-1)</dt> <dd lang='en'>Science visualisation workflow toolkit</dd> <dt><a href='vmtk' id='vmtk'>vmtk</a> (1.3+dfsg-2.3) [non-free]</dt> <dd lang='en'>the Vascular Modeling Toolkit</dd> <dt><a href='voro++' id='voro++'>voro++</a> (0.4.6+dfsg1-3)</dt> <dd lang='en'>library for the computation of the Voronoi diagram</dd> <dt><a href='voro++-examples' id='voro++-examples'>voro++-examples</a> (0.4.6+dfsg1-3)</dt> <dd lang='en'>library for the computation of the Voronoi diagram (examples)</dd> <dt><a href='voronota' id='voronota'>voronota</a> (1.19.2352-1)</dt> <dd lang='en'>Voronoi diagram-based tool to find atom contacts</dd> <dt><a href='votca-csg' id='votca-csg'>votca-csg</a> (1.5-3)</dt> <dd lang='en'>VOTCA's coarse-graining engine</dd> <dt><a href='votca-csg-scripts' id='votca-csg-scripts'>votca-csg-scripts</a> (1.5-3)</dt> <dd lang='en'>VOTCA's coarse-graining scripts</dd> <dt><a href='votca-csg-tutorials' id='votca-csg-tutorials'>votca-csg-tutorials</a> (1.5-3)</dt> <dd lang='en'>VOTCA's coarse-graining tutorials</dd> <dt><a href='voxbo' id='voxbo'>voxbo</a> (1.8.5~svn1246-3+b1)</dt> <dd>обработка, статистический анализ и просмотр снимков головного мозга</dd> <dt><a href='vsearch' id='vsearch'>vsearch</a> (2.10.4-1)</dt> <dd lang='en'>tool for processing metagenomic sequences</dd> <dt><a href='wcslib-tools' id='wcslib-tools'>wcslib-tools</a> (6.2-2)</dt> <dd lang='en'>Command line tools utilizing wcslib</dd> <dt><a href='wcstools' id='wcstools'>wcstools</a> (3.9.5-3)</dt> <dd lang='en'>Handle the WCS of a FITS image</dd> <dt><a href='weightwatcher' id='weightwatcher'>weightwatcher</a> (1.12+dfsg-1)</dt> <dd lang='en'>Combine maps and polygon data for astronomical image processing</dd> <dt><a href='weka' id='weka'>weka</a> (3.6.14-1)</dt> <dd lang='en'>Machine learning algorithms for data mining tasks</dd> <dt><a href='wigeon' id='wigeon'>wigeon</a> (20101212+dfsg1-2)</dt> <dd lang='en'>reimplementation of the Pintail 16S DNA anomaly detection utility</dd> <dt><a href='wise' id='wise'>wise</a> (2.4.1-21)</dt> <dd lang='en'>comparison of biopolymers, like DNA and protein sequences</dd> <dt><a href='wsclean' id='wsclean'>wsclean</a> (2.6-1+b3)</dt> <dd lang='en'>Fast generic widefield interferometric imager</dd> <dt><a href='wxastrocapture' id='wxastrocapture'>wxastrocapture</a> (1.8.1+git20140821+dfsg-2)</dt> <dd lang='en'>Windows linuX Astronomy Capture</dd> <dt><a href='x13as' id='x13as'>x13as</a> (1.1-B39-1) [non-free]</dt> <dd lang='en'>seasonal adjustment software for modeling time series</dd> <dt><a href='xbs' id='xbs'>xbs</a> (0-10+b1)</dt> <dd lang='en'>3-d models and movies of molecules</dd> <dt><a href='xcas' id='xcas'>xcas</a> (1.4.9.69+dfsg1-2)</dt> <dd lang='en'>Computer Algebra System - console and graphical calculator</dd> <dt><a href='xdrawchem' id='xdrawchem'>xdrawchem</a> (1:1.10.2.1-2)</dt> <dd lang='en'>Chemical structures and reactions editor</dd> <dt><a href='xflr5' id='xflr5'>xflr5</a> (6.09.06-2+b3)</dt> <dd lang='en'>analysis tool for airfoils</dd> <dt><a href='xfoil' id='xfoil'>xfoil</a> (6.99.dfsg+1-1)</dt> <dd lang='en'>program for the design and analysis of subsonic airfoils</dd> <dt><a href='xmakemol' id='xmakemol'>xmakemol</a> (5.16-9+b1)</dt> <dd lang='en'>program for visualizing atomic and molecular systems</dd> <dt><a href='xmakemol-gl' id='xmakemol-gl'>xmakemol-gl</a> (5.16-9+b1)</dt> <dd lang='en'>program for visualizing atomic and molecular systems (OpenGL)</dd> <dt><a href='xmds2' id='xmds2'>xmds2</a> (2.2.3+dfsg-15)</dt> <dd lang='en'>eXtensible Multi-Dimensional Simulator</dd> <dt><a href='xpa-tools' id='xpa-tools'>xpa-tools</a> (2.1.18-4)</dt> <dd lang='en'>Tools for seamless communication between Unix programs</dd> <dt><a href='xplot' id='xplot'>xplot</a> (1.19-9+b2)</dt> <dd lang='en'>simple on-screen x-y column data plotter</dd> <dt><a href='xplot-xplot.org' id='xplot-xplot.org'>xplot-xplot.org</a> (0.90.7.1-4)</dt> <dd lang='en'>fast tool to graph and visualize lots of data</dd> <dt><a href='xppaut' id='xppaut'>xppaut</a> (6.11b+1.dfsg-1+b2)</dt> <dd lang='en'>Phase Plane Plus Auto: Solves many kinds of equations</dd> <dt><a href='xtide-coastline' id='xtide-coastline'>xtide-coastline</a> (20020202-1)</dt> <dd lang='en'>coastline data for xtide</dd> <dt><a href='xtide-data' id='xtide-data'>xtide-data</a> (20100529-1)</dt> <dd lang='en'>Harmonics data for xtide</dd> <dt><a href='xtide-data-nonfree' id='xtide-data-nonfree'>xtide-data-nonfree</a> (20100529-1) [non-free]</dt> <dd lang='en'>Harmonics data for xtide (Canada, Netherlands, Germany and UK)</dd> <dt><a href='xyscan' id='xyscan'>xyscan</a> (4.30-2+b2)</dt> <dd lang='en'>data thief for scientists</dd> <dt><a href='yade' id='yade'>yade</a> (2019.01a-2)</dt> <dd lang='en'>Platform for discrete element modeling</dd> <dt><a href='yagv' id='yagv'>yagv</a> (0.4~20130422.r5bd15ed+dfsg-4)</dt> <dd lang='en'>yet another G-code viewer</dd> <dt><a href='yaha' id='yaha'>yaha</a> (0.1.83-1)</dt> <dd lang='en'>find split-read mappings on single-end queries</dd> <dt><a href='yale' id='yale'>yale</a> (5.0.95-2) [non-free]</dt> <dd lang='en'>stellar data set from the Yale Bright Star Catalog</dd> <dt><a href='yorick' id='yorick'>yorick</a> (2.2.04+dfsg1-10)</dt> <dd>интерпретируемый язык для научных расчётов и графики</dd> <dt><a href='yorick-av' id='yorick-av'>yorick-av</a> (0.0.5-1+b1)</dt> <dd lang='en'>write movies from Yorick in various formats</dd> <dt><a href='yorick-cubeview' id='yorick-cubeview'>yorick-cubeview</a> (2.2-2)</dt> <dd lang='en'>3D FITS data viewer specialized in spectro-imaging</dd> <dt><a href='yorick-curses' id='yorick-curses'>yorick-curses</a> (0.1-6+b2)</dt> <dd lang='en'>interface to the (n)curses library for the Yorick language</dd> <dt><a href='yorick-data' id='yorick-data'>yorick-data</a> (2.2.04+dfsg1-10)</dt> <dd lang='en'>interpreted library for the Yorick language</dd> <dt><a href='yorick-dev' id='yorick-dev'>yorick-dev</a> (2.2.04+dfsg1-10)</dt> <dd lang='en'>development files for the Yorick interpreted language</dd> <dt><a href='yorick-full' id='yorick-full'>yorick-full</a> (2.2.04+dfsg1+full)</dt> <dd lang='en'>full installation of the Yorick interpreter and add-ons</dd> <dt><a href='yorick-gl' id='yorick-gl'>yorick-gl</a> (1.1+cvs20070922+dfsg-6.1)</dt> <dd lang='en'>OpenGL 3D graphics support for the Yorick language</dd> <dt><a href='yorick-gy' id='yorick-gy'>yorick-gy</a> (0.0.5-1)</dt> <dd lang='en'>GObject introspection and Gtk bindings for Yorick</dd> <dt><a href='yorick-gyoto' id='yorick-gyoto'>yorick-gyoto</a> (1.3.1-1)</dt> <dd lang='en'>General relativistic geodesic integration for the Yorick language</dd> <dt><a href='yorick-hdf5' id='yorick-hdf5'>yorick-hdf5</a> (0.8.0-8+b1)</dt> <dd lang='en'>Hierarchical Data Format 5 interface for the Yorick language</dd> <dt><a href='yorick-imutil' id='yorick-imutil'>yorick-imutil</a> (0.5.7-3)</dt> <dd lang='en'>fast image manipulation routines for the Yorick language</dd> <dt><a href='yorick-mira' id='yorick-mira'>yorick-mira</a> (1.1.0+git20170124.3bd1c3~dfsg1-2)</dt> <dd lang='en'>optical interferometry image reconstruction within Yorick</dd> <dt><a href='yorick-ml4' id='yorick-ml4'>yorick-ml4</a> (0.6.0-3)</dt> <dd lang='en'>Matlab file format support for the Yorick language</dd> <dt><a href='yorick-mpeg' id='yorick-mpeg'>yorick-mpeg</a> (0.1-3)</dt> <dd lang='en'>MPEG output support for the Yorick language</dd> <dt><a href='yorick-mpy-common' id='yorick-mpy-common'>yorick-mpy-common</a> (2.2.04+dfsg1-10)</dt> <dd lang='en'>Message Passing Yorick (common files)</dd> <dt><a href='yorick-mpy-mpich2' id='yorick-mpy-mpich2'>yorick-mpy-mpich2</a> (2.2.04+dfsg1-10)</dt> <dd lang='en'>Message Passing Yorick (MPICH2 build)</dd> <dt><a href='yorick-mpy-openmpi' id='yorick-mpy-openmpi'>yorick-mpy-openmpi</a> (2.2.04+dfsg1-10)</dt> <dd lang='en'>Message Passing Yorick (OpenMPI build)</dd> <dt><a href='yorick-optimpack' id='yorick-optimpack'>yorick-optimpack</a> (1.3.2+dfsg+1.4.0-1)</dt> <dd lang='en'>optimization of large scale problems for the Yorick language</dd> <dt><a href='yorick-soy' id='yorick-soy'>yorick-soy</a> (1.4.0-3)</dt> <dd lang='en'>sparse matrix operations for the Yorick language</dd> <dt><a href='yorick-spydr' id='yorick-spydr'>yorick-spydr</a> (0.8.2-3)</dt> <dd lang='en'>FITS image display and simple analysis</dd> <dt><a href='yorick-svipc' id='yorick-svipc'>yorick-svipc</a> (0.16-3)</dt> <dd lang='en'>interprocess communication (shared memory...) for Yorick</dd> <dt><a href='yorick-yao' id='yorick-yao'>yorick-yao</a> (5.4.0-1)</dt> <dd lang='en'>Yorick-based adaptive optics system simulator</dd> <dt><a href='yorick-yeti' id='yorick-yeti'>yorick-yeti</a> (6.4.0-1)</dt> <dd lang='en'>utility plugin for the Yorick language</dd> <dt><a href='yorick-yeti-fftw' id='yorick-yeti-fftw'>yorick-yeti-fftw</a> (6.4.0-1)</dt> <dd lang='en'>FFT plugin for the Yorick language</dd> <dt><a href='yorick-yeti-regex' id='yorick-yeti-regex'>yorick-yeti-regex</a> (6.4.0-1)</dt> <dd lang='en'>POSIX regular expressions for the Yorick language</dd> <dt><a href='yorick-yeti-tiff' id='yorick-yeti-tiff'>yorick-yeti-tiff</a> (6.4.0-1)</dt> <dd lang='en'>TIFF image format input for the Yorick language</dd> <dt><a href='yorick-ygsl' id='yorick-ygsl'>yorick-ygsl</a> (1.2.1-1+b1)</dt> <dd lang='en'>GSL special functions plugin for the Yorick language</dd> <dt><a href='yorick-ynfft' id='yorick-ynfft'>yorick-ynfft</a> (1.0.3-1)</dt> <dd lang='en'>nonequispaced fast Fourier transform for Yorick</dd> <dt><a href='yorick-yutils' id='yorick-yutils'>yorick-yutils</a> (1.5.2-1)</dt> <dd lang='en'>various utilities for the Yorick language</dd> <dt><a href='yorick-z' id='yorick-z'>yorick-z</a> (1.2.0+cvs20080115-5+b2)</dt> <dd lang='en'>zlib, jpeg and png support for the Yorick language</dd> <dt><a href='z3' id='z3'>z3</a> (4.4.1-1~deb10u1)</dt> <dd lang='en'>theorem prover from Microsoft Research</dd> <dt><a href='z88' id='z88'>z88</a> (13.0.0+dfsg2-6)</dt> <dd>программа конечноэлементного анализа — среда выполнения</dd> <dt><a href='z88-data' id='z88-data'>z88-data</a> (13.0.0+dfsg2-6)</dt> <dd lang='en'>Finite Element Analysis Program - data</dd> <dt><a href='zalign' id='zalign'>zalign</a> (0.9.1-4)</dt> <dd lang='en'>parallel local alignment of biological sequences</dd> <dt><a href='zegrapher' id='zegrapher'>zegrapher</a> (3.0.2-1)</dt> <dd>построение математических функций и последовательностей на плоскости</dd> <dt><a href='zimpl' id='zimpl'>zimpl</a> (3.3.6-1)</dt> <dd lang='en'>mathematical modeling language for optimization problems</dd> <dt><a href='ztex-bmp' id='ztex-bmp'>ztex-bmp</a> (20120314-2)</dt> <dd lang='en'>universal macro processor</dd> </dl> </div>  <div id="footer"> <hr class="hidecss">  <div id="pageLang"> <div id="langSelector"> Эта 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