M贸dulo 2 Summer School FISABIO

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is-offset-1-widescreen flow flow--5"> <div> <nav class="breadcrumb-nav" aria-label="Miga de pan"><ol class="link-dn is-flex is-flex-wrap-wrap gap-2 is-size-9" itemscope itemtype="http://schema.org/BreadcrumbList"><li itemprop="itemListElement" itemscope itemtype="http://schema.org/ListItem"><a itemscope itemtype="http://schema.org/Thing" itemprop="item" href="/es/"><span itemprop="name">Inicio</span></a><meta itemprop="position" content="1"></li><li itemprop="itemListElement" itemscope itemtype="http://schema.org/ListItem"><a itemscope itemtype="http://schema.org/Thing" itemprop="item" href="/es/actualidad"><span itemprop="name">Actualidad</span></a><meta itemprop="position" content="2"></li><li itemprop="itemListElement" itemscope itemtype="http://schema.org/ListItem"><a itemscope itemtype="http://schema.org/Thing" itemprop="item" href="/es/actualidad/summer-school"><span itemprop="name">Summer School</span></a><meta itemprop="position" content="3"></li><li itemprop="itemListElement" itemscope itemtype="http://schema.org/ListItem"><a itemscope itemtype="http://schema.org/Thing" itemprop="item" href="/es/actualidad/summer-school/module-2/"><span itemprop="name">Module 2</span></a><meta itemprop="position" content="4"></li></ol></nav> <h1 class="mt-xs">Module 2 / Microbial Genomics & Metagenomics Workshop</h1> </div> <div class="text-content flow flow--3"> <p class="is-size-8"><strong>Dates:</strong> June 24th - June 28th 2024</p> <p><strong>Organiser:</strong> <strong><em>Mar铆a Pilar Francino </em></strong><strong><em>(</em></strong><a href="mailto:pilar.francino@fisabio.es">pilar.francino@fisabio.es</a><strong><em>)</em></strong></p> <div class="sidebar-right imgRight"> <div class="imgRight-content"> <p>The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and related fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the human microbiome. The workshop will train participants in state-of-the-art analytical methods in this area, by means of theoretical lectures and seminars as well as practical hands-on sessions in bioinformatics and biostatistics. Several sessions will be devoted to training in the use of the Integrated Microbial Genomes system (IMG), a database and analysis platform developed at the U.S. DOE Joint Genome Institute (Berkeley, California) for comprehensive studies of genomes and metagenomes. The IMG system will be presented by Dr. Natalia Ivanova and Dr. Rekha Seshadri from the JGI's Microbial Genomics & Metagenomics Scientific Program, the group responsible for IMG development.</p> <p><strong>Module costs:</strong> 350 euros</p> <p><strong>Language:</strong> english</p> </div> <div class="imgRight-image"><img alt="" src="/media/upload/arxius/actualidad/summer-school-2024/summer-fisabio-banner-v2-english.jpg?_t=1713941101"></div> </div> <p class="button"><a href="https://atenea.fisabio.san.gva.es/redcap/surveys/?s=FNK3FNND8YEHNNKY">Registration</a></p> <p class="download-doc"><a href="/media/upload/arxius/actualidad/summer-school-2024/modulo-2-genomics-workshop-2024-v2-ok.pdf"><em>You can check the program</em></a></p> <div> <h2>Instructors</h2> </div> <ul class="caixetes-list columns is-mobile is-variable is-multiline is-7 link-dn" role="list"> <li class="has-text-centered column is-half-mobile is-4-tablet is-3-widescreen"> <img class="rounded" loading="lazy" src="/media/upload/cache/GiuseppeDAuria_retocadaOK_1712311732_a134x134webp.webp" width="134" height="134" srcset="/media/upload/cache/GiuseppeDAuria_retocadaOK_1712311732_webp.webp 2x" alt=""> <h3 class="has-text-weight-normal has-text-primary is-size-8">Giuseppe D'Auria</h3> <p class="is-size-9 has-text-weight-normal"> <a href="mailto:giuseppe.dauria@fisabio.es">giuseppe.dauria@fisabio.es</a> </p> </li> <li class="has-text-centered column is-half-mobile is-4-tablet is-3-widescreen"> <img class="rounded" loading="lazy" src="/media/upload/cache/MaraPilarFrancino_retocadaOK_1712311942_a134x134webp.webp" width="134" height="134" srcset="/media/upload/cache/MaraPilarFrancino_retocadaOK_1712311942_webp.webp 2x" alt=""> <h3 class="has-text-weight-normal has-text-primary is-size-8">M.Pilar Francino</h3> <p class="is-size-9 has-text-weight-normal"> <a href="mailto:pilar.francino@fisabio.es">pilar.francino@fisabio.es</a> </p> </li> <li class="has-text-centered column is-half-mobile is-4-tablet is-3-widescreen"> <img class="rounded" loading="lazy" src="/media/upload/cache/NataliaIvanova_retocadaOK_1712316578_a134x134webp.webp" width="134" height="134" srcset="/media/upload/cache/NataliaIvanova_retocadaOK_1712316578_webp.webp 2x" alt=""> <h3 class="has-text-weight-normal has-text-primary is-size-8">Natalia Ivanova</h3> <p class="is-size-9 has-text-weight-normal"> <a href="mailto:nnivanova@lbl.gov">nnivanova@lbl.gov</a> </p> </li> <li class="has-text-centered column is-half-mobile is-4-tablet is-3-widescreen"> <img class="rounded" loading="lazy" src="/media/upload/cache/DavidPez_retocadoOK_1712317821_a134x134webp.webp" width="134" height="134" srcset="/media/upload/cache/DavidPez_retocadoOK_1712317821_webp.webp 2x" alt=""> <h3 class="has-text-weight-normal has-text-primary is-size-8">David P谩ez</h3> <p class="is-size-9 has-text-weight-normal"> <a href="mailto:paezespino@gmail.com">paezespino@gmail.com</a> </p> </li> <li class="has-text-centered column is-half-mobile is-4-tablet is-3-widescreen"> <img class="rounded" loading="lazy" src="/media/upload/cache/DavidPrez_Villaroya_retocadaOK_1712318604_a134x134webp.webp" width="134" height="134" srcset="/media/upload/cache/DavidPrez_Villaroya_retocadaOK_1712318604_webp.webp 2x" alt=""> <h3 class="has-text-weight-normal has-text-primary is-size-8">David Perez-Villaroya</h3> <p class="is-size-9 has-text-weight-normal"> <a href="mailto:pevida@alumni.uv.es">pevida@alumni.uv.es</a> </p> </li> <li class="has-text-centered column is-half-mobile is-4-tablet is-3-widescreen"> <img class="rounded" loading="lazy" src="/media/upload/cache/MarianaReyes_retocadaOK_1712311732_a134x134webp.webp" width="134" height="134" srcset="/media/upload/cache/MarianaReyes_retocadaOK_1712311732_webp.webp 2x" alt=""> <h3 class="has-text-weight-normal has-text-primary is-size-8">Mariana Reyes</h3> <p class="is-size-9 has-text-weight-normal"> <a href="mailto:mariana.reyes@fisabio.es">mariana.reyes@fisabio.es</a> </p> </li> <li class="has-text-centered column is-half-mobile is-4-tablet is-3-widescreen"> <img class="rounded" loading="lazy" src="/media/upload/cache/RekhaSeshadri_retocadaOK_1712316469_a134x134webp.webp" width="134" height="134" srcset="/media/upload/cache/RekhaSeshadri_retocadaOK_1712316469_webp.webp 2x" alt=""> <h3 class="has-text-weight-normal has-text-primary is-size-8">Rekha Seshadri</h3> <p class="is-size-9 has-text-weight-normal"> <a href="mailto:rseshadri@lbl.gov">rseshadri@lbl.gov</a> </p> </li> </ul> <h2>Module program</h2> <div class="collapsible flow flow--3"> <h3 class="collapsible__title">Monday June 24th</h3> <p>09:00 - 10:00 Welcome and Overview of the Workshop by Dr. M. Pilar Francino, Dr. Rekha Seshadri and Dr. Natalia Ivanova.<br> 10:00 - 11:00 Features and Diversity of Microbial Genomes by Dr. M. Pilar Francino.</p> <p><em>Break</em></p> <p>11:15 - 12:15 Microbial communities, the human microbiome and its relationship to health by Dr. M. Pilar Francino.<br> 12:15 - 13:15 Introduction to the Analysis of Bacterial Communities by Dr. M. Pilar Francino.</p> <p><em>Lunch</em></p> <p>15:00 - 15:30 Introduction to the Integrated Microbial Genomics system by Dr Natalia Ivanova.<br> 15:30 - 18:00 Unix commands and moving around the system by David P茅rez-Villarroya.</p> <h3 class="collapsible__title">Tuesday June 25th</h3> <p>09:00 - 10:00 Informatic Processing and Quality Control of Sequencing Reads by Mariana Reyes.<br> 10:00 - 11:00 Microbial Diversity Analyses with 16S rRNA (I) by Mariana Reyes.</p> <p><em>Break</em></p> <p>11:15 - 13:15 Microbial Diversity Analyses with 16S rRNA (II) by Mariana Reyes.</p> <p><em>Lunch</em></p> <p>15:00 - 18:00 Sequence Assembly and Read Mapping by Dr. Giuseppe D'Auria.</p> <h3 class="collapsible__title">Wednesday June 26th</h3> <p>09:00 - 11:00 Functional Annotation and Comparative Genomics in IMG by Dr. Rekha Seshadri</p> <p>- Introduction</p> <p>- Isolate Comparative Genomics Case Study: Live Demo聽</p> <p><em>Break</em>聽聽</p> <p>11:15 - 13:15聽聽- Hands-on Exercise (student work)</p> <p>- Review/Discuss solutions by Dr. Rekha Seshadri and Dr. M. Pilar Francino聽</p> <p><em>Lunch</em></p> <p>15:00 - 18:00 CRISPR analyses and Uncovering the Earth's virome by David P谩ez-Espino.聽</p> <h3 class="collapsible__title">Thursday June 27th</h3> <p>09:00 - 11:00 IMG/M Metagenome Analysis: Live Demonstration by Dr. Natalia Ivanova</p> <p>聽 - Introduction</p> <p>聽 - Metagenome Comparisons Case Study:聽Live Demo</p> <p><em>Break</em></p> <p>11:15 - 13:15聽 - Hands-on Exercise (student work)</p> <p>聽 - Review/Discuss solutions by Dr. Natalia Ivanova and Dr. M. Pilar Francino</p> <p><em>Lunch</em></p> <p>15:00 - 18:00 Preparation of student analysis projects: students form groups, choose their genome or metagenome analysis project and start carrying it out, supervised by Dr. Rekha Seshadri and Dr. M. Pilar Francino</p> <h3 class="collapsible__title">Friday June 28th</h3> <p>09:00 - 11:00 Preparation of student analysis projects: students complete their genome or metagenome analysis project and prepare a presentation, supervised by Dr. Rekha Seshadri and Dr. M. Pilar Francino</p> <p><em>Break</em></p> <p>11:15 - 12:45 Presentations of genome or metagenome analysis projects by student groups, supervised by Dr. Rekha Seshadri and Dr. M. Pilar Francino</p> <p>12:45 - 13:15 IMG Tutorial Summary, Discussion and Questions, supervised by Dr. M. 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