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Advanced LC-MS Tools and Software Solutions to Ease Your Metabolite Identification Challenges - AnalyteGuru
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class="breadcrumb-link-text-wrap">Biopharmaceutical</span></a><meta ></span> <span aria-label="breadcrumb separator">/</span> <span class="breadcrumb-current-title">Advanced LC-MS Tools and Software Solutions to Ease Your Metabolite Identification Challenges</span></div></div></header><div class="site-inner"><div class="content-sidebar-wrap"><main class="content"><article class="post-17396 post type-post status-publish format-standard has-post-thumbnail category-biopharmaceutical category-pharmaceutical tag-biopharmaceutical tag-lc-ms tag-metabolite-identification tag-pharmaceutical entry" aria-label="Advanced LC-MS Tools and Software Solutions to Ease Your Metabolite Identification Challenges"><header class="entry-header"><h1 class="entry-title">Advanced LC-MS Tools and Software Solutions to Ease Your Metabolite Identification Challenges</h1> <span class="post-info-author"> By <a href="https://www.thermofisher.com/blog/analyteguru/tf-author/sven-hackbusch/" title="Posts by Sven Hackbusch | Sebastien Morin" rel="author">Sven Hackbusch | Sebastien Morin, Thermo Fisher Scientific</a> </span> <span class="post-info-date"> 03.28.2024 </span> </header><div class="entry-content"> <p><em>This is the second of a three-part series on Thermo Fisher Scientific analytical instrument solutions for metabolite identification in the small molecule DMPK drug development process. If you missed part one, catch up here: <a href="https://www.thermofisher.com/blog/analyteguru/speed-up-drug-development-process/" target="_blank" rel="noreferrer noopener">Speed up the drug development process …</a></em></p> <p>Metabolite identification (MetID) using LC-MS instrumentation from <em>in </em>vitro and <em>in vivo </em>studies is a critical part of the drug development process, but having improper tools to assess drug metabolism can lead to serious and costly implications during clinical phases and ꟷ in the worst case ꟷ rejection of an NDI. Fortunately, Thermo Fisher Scientific offers advanced tools to avoid pitfalls related to improper MetID assessment.</p> <figure class="wp-block-image size-large"><img decoding="async" width="1024" height="570" src="https://www.thermofisher.com/blog/analyteguru/wp-content/uploads/sites/25/2024/03/Metabolite-ID-2-1024x570.jpg" alt="" class="wp-image-17401" srcset="https://www.thermofisher.com/blog/analyteguru/wp-content/uploads/sites/25/2024/03/Metabolite-ID-2-1024x570.jpg 1024w, https://www.thermofisher.com/blog/analyteguru/wp-content/uploads/sites/25/2024/03/Metabolite-ID-2-300x167.jpg 300w, https://www.thermofisher.com/blog/analyteguru/wp-content/uploads/sites/25/2024/03/Metabolite-ID-2-768x428.jpg 768w, https://www.thermofisher.com/blog/analyteguru/wp-content/uploads/sites/25/2024/03/Metabolite-ID-2-450x250.jpg 450w, https://www.thermofisher.com/blog/analyteguru/wp-content/uploads/sites/25/2024/03/Metabolite-ID-2.jpg 1200w" sizes="(max-width: 1024px) 100vw, 1024px" /></figure> <h3 class="wp-block-heading" id="h-identifying-metabolites-in-challenging-matrices-shouldn-t-be-a-challenge"><strong>Identifying metabolites in challenging matrices shouldn’t be a challenge</strong></h3> <p>To determine the transformation site for metabolites typically requires fragmentation data, making it necessary to obtain fragmentation coverage of all metabolites. However, one of the main challenges in the profiling of drug metabolites is that complex background signals from matrix components can obscure low-level metabolites during data acquisition, making the untargeted fragmentation data acquisition difficult. In <a href="https://assets.thermofisher.com/TFS-Assets/CMD/Reference-Materials/wp-002154-lsms-orbitrap-iqx-dia-wp002154-na-en.pdf" target="_blank" rel="noreferrer noopener">this whitepaper</a>, Hackbusch <em>et al.</em> discuss the benefits of using advanced acquisition strategies to exclude unwanted background information and ultimately simplify the data analysis.</p> <p>Additionally, routine metabolite identification work typically relies on collisional dissociation (HCD or CID) to generate diagnostic fragments. However, in some instances the determination of transformation sites can be challenged if only non-specific fragments are generated. Orthogonal fragmentation modes such as ultraviolet photo dissociation (UVPD) can allows for deeper insight. As an example of this benefit, Figure 1 shows the use of UVPD fragments to determine the localization of an acyl-glucoronide bond for a metabolite of diclofenac, which wasn’t possible from HCD fragmentation data.</p> <p>Read the complete whitepaper on <a href="https://assets.thermofisher.com/TFS-Assets/CMD/Reference-Materials/wp-002154-lsms-orbitrap-iqx-dia-wp002154-na-en.pdf" target="_blank" rel="noreferrer noopener">drug metabolite identification</a> and discover our metabolite identification solutions on the <a href="https://www.thermofisher.com/us/en/home/industrial/pharma-biopharma/pre-clinical-and-clinical-drug-testing/metabolite-identification.html" target="_blank" rel="noreferrer noopener">Thermo Fisher Scientific website.</a></p> <figure class="wp-block-image size-full is-resized"><img decoding="async" width="775" height="377" src="https://www.thermofisher.com/blog/analyteguru/wp-content/uploads/sites/25/2024/03/Figure-1-Chroma-and-elemental-video.png" alt="Figure 1: Comparison of the HCD spectrum" class="wp-image-17398" style="width:833px;height:auto" srcset="https://www.thermofisher.com/blog/analyteguru/wp-content/uploads/sites/25/2024/03/Figure-1-Chroma-and-elemental-video.png 775w, https://www.thermofisher.com/blog/analyteguru/wp-content/uploads/sites/25/2024/03/Figure-1-Chroma-and-elemental-video-300x146.png 300w, https://www.thermofisher.com/blog/analyteguru/wp-content/uploads/sites/25/2024/03/Figure-1-Chroma-and-elemental-video-768x374.png 768w" sizes="(max-width: 775px) 100vw, 775px" /><figcaption class="wp-element-caption"><em>Figure 1. Comparison of the HCD spectrum of diclofenac (top) with the HCD spectrum for its glucuronate metabolite (middle), showing no additional fragments to permit confirmation of the glucuronide position, and the UVPD spectrum (bottom), which allowed the determination of the acyl-glucuronide bond based on the assigned fragment structure for the unique ion at m/z 327.</em> </figcaption></figure> <h3 class="wp-block-heading" id="h-related-information"><strong>Related information</strong></h3> <p>Blog Part 1 of 3: <a href="https://www.thermofisher.com/blog/analyteguru/speed-up-drug-development-process/" target="_blank" rel="noreferrer noopener">Speed up Drug Development Process With Fit-for-Purpose Metabolite Identification Solutions</a><br>Blog Part 3 of 3: <a href="https://www.thermofisher.com/blog/analyteguru/leveraging-lc-ms-for-accurate-metabolite-identification-metid-in-drug-development/" target="_blank" rel="noreferrer noopener">Leveraging LC-MS for Accurate Metabolite Identification (MetID) in Drug Discovery & Development</a><br>Blog: <a href="https://www.thermofisher.com/blog/analyteguru/metabolite-identification-solutions-showcased-at-great-lakes-dmdg-2024-meeting/" target="_blank" rel="noreferrer noopener">Metabolite Identification Solutions Showcased at Great Lakes DMDG 2024 Meeting</a><br><br>You can also find out more about Thermo Fisher Scientific’s cutting edge analytical instruments and software solutions to streamline and speed up any drug development processes in our <a href="https://www.thermofisher.com/us/en/home/industrial/pharma-biopharma/pharma-biopharma-learning-center.html">Pharma & Biopharma Learning Center.</a> </p> <p>On LinkedIn? Visit our <a href="https://www.linkedin.com/showcase/chromatography-&-mass-spectrometry/posts/?feedView=all" target="_blank" rel="noreferrer noopener">LinkedIn page</a> #pharmaceutical #biopharmaceutical #MetID #CMD</p> <p></p> </div></article><section class="author-box"><h4 class="author-box-title">Sven Hackbusch | Sebastien Morin</h4><div class="author-box-content" itemprop="description">Sven Hackbusch is a Senior Application Scientist at Thermo Fisher Scientific, responsible for the development of LC/MS applications related to the identification and structural elucidation of unknown compounds in collaboration with customers in the Pharma/Biopharma markets. | Sebastien Morin is a Business Development Manager for the Pharma and Biopharma market at Thermo Fisher Scientific, having spent several years in both industry, and sales and marketing. Sebastien has a particular interest in small molecules drug discovery, having worked several years as a medicinal chemist prior to joining Thermo Fisher.</div></section><div class="adjacent-entry-pagination pagination"><div class="pagination-previous alignleft"><i class="fa fa-icon fa-chevron-left"></i> <a href="https://www.thermofisher.com/blog/analyteguru/unveiling-hidden-impurities-lc-hrms-for-biopharmaceutical-analysis/" rel="prev">Unveiling Hidden Impurities: LC-HRMS for Biopharmaceutical Analysis</a></div><div class="pagination-next alignright"><a href="https://www.thermofisher.com/blog/analyteguru/what-are-dioxins-and-pcbs-and-what-type-of-gc-ms-should-you-use-to-analyze-them/" rel="next">What are Dioxins and PCBs, and What Type of GC-MS Should You Use to Analyze Them?</a> <i class="fa fa-icon fa-chevron-right"></i></div></div></main></div></div><footer class="site-footer"><div class="wrap"><div class="creds"><p class="footer-links"><a href="https://corporate.thermofisher.com/en/footer/privacy-statement.html" target="_blank" rel="noopener noreferrer">Privacy Statement</a><a href="https://corporate.thermofisher.com/en/footer/terms-and-conditions.html" target="_blank" rel="noopener noreferrer">Terms & Conditions</a><a href="/blog/locations/">Locations</a><a href="/blog/sitemap/">Sitemap</a></p><p>© 2024 <a href="https://www.thermofisher.com">Thermo Fisher Scientific</a>. 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