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id="et-main-area"> <div id="main-content"> <article id="post-251" class="post-251 page type-page status-publish hentry"> <div class="entry-content"> <div class="et-l et-l--post"> <div class="et_builder_inner_content et_pb_gutters3"> <div class="et_pb_section et_pb_section_0 et_pb_fullwidth_section et_section_regular" > <section class="et_pb_module et_pb_fullwidth_header et_pb_fullwidth_header_0 et_pb_text_align_left et_pb_bg_layout_dark et_pb_fullscreen"> <div class="et_pb_fullwidth_header_container left"> <div class="header-content-container center"> <div class="header-content"> <h1 class="et_pb_module_header">Welcome to BioPortal</h1> <div class="et_pb_header_content_wrapper"><p>The world’s most comprehensive repository of biomedical ontologies</p></div> <a class="et_pb_button et_pb_more_button et_pb_button_one" href="http://bioportal.bioontology.org/">Launch BioPortal</a> </div> </div> </div> <div class="et_pb_fullwidth_header_overlay"></div> <div class="et_pb_fullwidth_header_scroll"><a href="#" class="scroll-down-container"> <span class="scroll-down et-pb-icon">;</span> </a></div> </section> </div><div class="et_pb_section et_pb_section_1 et_pb_with_background et_section_regular" > <div class="et_pb_row et_pb_row_0"> <div class="et_pb_column et_pb_column_4_4 et_pb_column_0 et_pb_css_mix_blend_mode_passthrough et-last-child"> <div class="et_pb_module et_pb_text et_pb_text_0 et_pb_text_align_left et_pb_bg_layout_light"> <div class="et_pb_text_inner"><h1 style="text-align: center;">What BioPortal Does</h1></div> </div> </div> </div><div class="et_pb_row et_pb_row_1"> <div class="et_pb_column et_pb_column_1_3 et_pb_column_1 et_pb_css_mix_blend_mode_passthrough"> <div class="et_pb_module et_pb_blurb et_pb_blurb_0 et_hover_enabled et_clickable et_pb_text_align_left et_pb_blurb_position_left et_pb_bg_layout_light"> <div class="et_pb_blurb_content"> <div class="et_pb_main_blurb_image"><span class="et_pb_image_wrap"><span class="et-waypoint et_pb_animation_off et_pb_animation_off_tablet et_pb_animation_off_phone et-pb-icon et-pb-icon-circle">9</span></span></div> <div class="et_pb_blurb_container"> <h4 class="et_pb_module_header"><span>Ontology Browser</span></h4> <div class="et_pb_blurb_description"><p>Browse, find, and filter ontologies in our ontology library.</p></div> </div> </div> </div> </div><div class="et_pb_column et_pb_column_1_3 et_pb_column_2 et_pb_css_mix_blend_mode_passthrough"> <div class="et_pb_module et_pb_blurb et_pb_blurb_1 et_clickable et_pb_text_align_left et_pb_blurb_position_left et_pb_bg_layout_light"> <div class="et_pb_blurb_content"> <div class="et_pb_main_blurb_image"><span class="et_pb_image_wrap"><span class="et-waypoint et_pb_animation_top et_pb_animation_top_tablet et_pb_animation_top_phone et-pb-icon et-pb-icon-circle">9</span></span></div> <div class="et_pb_blurb_container"> <h4 class="et_pb_module_header"><span>Term Search</span></h4> <div class="et_pb_blurb_description"><p>Search for terms across multiple ontologies.</p></div> </div> </div> </div> </div><div class="et_pb_column et_pb_column_1_3 et_pb_column_3 et_pb_css_mix_blend_mode_passthrough et-last-child"> <div class="et_pb_module et_pb_blurb et_pb_blurb_2 et_hover_enabled et_clickable et_pb_text_align_left et_pb_blurb_position_left et_pb_bg_layout_light"> <div class="et_pb_blurb_content"> <div class="et_pb_main_blurb_image"><span class="et_pb_image_wrap"><span class="et-waypoint et_pb_animation_top et_pb_animation_top_tablet et_pb_animation_top_phone et-pb-icon et-pb-icon-circle">9</span></span></div> <div class="et_pb_blurb_container"> <h4 class="et_pb_module_header"><span>Annotator</span></h4> <div class="et_pb_blurb_description"><p>Annotate your textual biomedical data with ontology terms.</p></div> </div> </div> </div> </div> </div><div class="et_pb_row et_pb_row_2"> <div class="et_pb_column et_pb_column_1_3 et_pb_column_4 et_pb_css_mix_blend_mode_passthrough"> <div class="et_pb_module et_pb_blurb et_pb_blurb_3 et_hover_enabled et_clickable et_pb_text_align_left et_pb_blurb_position_left et_pb_bg_layout_light"> <div class="et_pb_blurb_content"> <div class="et_pb_main_blurb_image"><span class="et_pb_image_wrap"><span class="et-waypoint et_pb_animation_top et_pb_animation_top_tablet et_pb_animation_top_phone et-pb-icon et-pb-icon-circle">9</span></span></div> <div class="et_pb_blurb_container"> <h4 class="et_pb_module_header"><span>Recommender</span></h4> <div class="et_pb_blurb_description"><p>Get ontology recommendations for annotation based on descriptions of your datasets.</p></div> </div> </div> </div> </div><div class="et_pb_column et_pb_column_1_3 et_pb_column_5 et_pb_css_mix_blend_mode_passthrough"> <div class="et_pb_module et_pb_blurb et_pb_blurb_4 et_hover_enabled et_clickable et_pb_text_align_left et_pb_blurb_position_left et_pb_bg_layout_light"> <div class="et_pb_blurb_content"> <div class="et_pb_main_blurb_image"><span class="et_pb_image_wrap"><span class="et-waypoint et_pb_animation_top et_pb_animation_top_tablet et_pb_animation_top_phone et-pb-icon et-pb-icon-circle">9</span></span></div> <div class="et_pb_blurb_container"> <h4 class="et_pb_module_header"><span>Mappings</span></h4> <div class="et_pb_blurb_description"><p>Explore mappings between ontology terms.</p></div> </div> </div> </div> </div><div class="et_pb_column et_pb_column_1_3 et_pb_column_6 et_pb_css_mix_blend_mode_passthrough et-last-child"> <div class="et_pb_module et_pb_blurb et_pb_blurb_5 et_hover_enabled et_clickable et_pb_text_align_left et_pb_blurb_position_left et_pb_bg_layout_light"> <div class="et_pb_blurb_content"> <div class="et_pb_main_blurb_image"><span class="et_pb_image_wrap"><span class="et-waypoint et_pb_animation_top et_pb_animation_top_tablet et_pb_animation_top_phone et-pb-icon et-pb-icon-circle">9</span></span></div> <div class="et_pb_blurb_container"> <h4 class="et_pb_module_header"><span>Ontology Submission</span></h4> <div class="et_pb_blurb_description"><p>Add your own ontology on any topic. <em>(Requires free account.)</em></p></div> </div> </div> </div> </div> </div> </div><div class="et_pb_section et_pb_section_2 et_pb_with_background et_section_regular" > <div class="et_pb_row et_pb_row_3"> <div class="et_pb_column et_pb_column_1_3 et_pb_column_7 et_pb_css_mix_blend_mode_passthrough"> <div class="et_pb_module et_pb_number_counter et_pb_number_counter_0 et_pb_text_align_center et_pb_bg_layout_dark et_pb_with_title" data-number-value="1506" data-number-separator=""> <div class="percent" ><p><span class="percent-value"></span><span class="percent-sign"></span></p></div> <h2 class="title">Ontologies</h2> </div> </div><div class="et_pb_column et_pb_column_1_3 et_pb_column_8 et_pb_css_mix_blend_mode_passthrough"> <div class="et_pb_module et_pb_number_counter et_pb_number_counter_1 et_pb_text_align_center et_pb_bg_layout_light et_pb_with_title" data-number-value="15661484" data-number-separator=","> <div class="percent" ><p><span class="percent-value"></span><span class="percent-sign"></span></p></div> <h2 class="title">Classes</h2> </div> </div><div class="et_pb_column et_pb_column_1_3 et_pb_column_9 et_pb_css_mix_blend_mode_passthrough et-last-child"> <div class="et_pb_module et_pb_number_counter et_pb_number_counter_2 et_pb_text_align_center et_pb_bg_layout_light et_pb_with_title" data-number-value="18038" data-number-separator=","> <div class="percent" ><p><span class="percent-value"></span><span class="percent-sign"></span></p></div> <h2 class="title">Users</h2> </div> </div> </div> </div><div class="et_pb_section et_pb_section_3 et_section_regular" > <div class="et_pb_row et_pb_row_4"> <div class="et_pb_column et_pb_column_4_4 et_pb_column_10 et_pb_css_mix_blend_mode_passthrough et-last-child"> <div class="et_pb_module et_pb_text et_pb_text_1 et_pb_text_align_left et_pb_bg_layout_light"> <div class="et_pb_text_inner"><h1 style="text-align: center;">What Users Say</h1></div> </div> </div> </div><div class="et_pb_row et_pb_row_5"> <div class="et_pb_column et_pb_column_4_4 et_pb_column_11 et_pb_css_mix_blend_mode_passthrough et-last-child"> <div class="et_pb_module et_pb_testimonial_slider et_pb_testimonial_slider_0"> <div class="et_pb_module_inner"> <div class="et_pb_testimonial_slider b3_ts_slider dot_nav_class_off testi_0 b3_quote_icon_default" > <div class="swiper-container"> <div class="swiper-wrapper et_pb_slides_testi"><div class="et_pb_slide_testi swiper-slide " ><div class="et_pb_container_testi clearfix "><div class=" et_pb_slide_description_testi et_pb_slide_description_testiEqual"><div class=" et_pb_slide_content_testi"><p>I rely on BioPortal for easy access to SNOMED and a number of other terminologies, particularly for when I just want to check the existence of specific terms. I love having a one-stop shop to find just about any ontology I might need.</p> </div><div class="et_pb_slide_title_name et_pb_slide_title_name_testi"><strong>Jessie Tenenbaum</strong> <span class="company_name"><a href="https://duke.edu/" target="_blank">Duke University</a></span></div></div> <div class="et_pb_slide_image_testi_responsive"><img decoding="async" src="https://www.bioontology.org/wp-content/plugins/divi-testimonial-slider/assets/images/default.png" height="125" width="125" alt="Jessie Tenenbaum" /></div></div></div> <div class="et_pb_slide_testi swiper-slide " ><div class="et_pb_container_testi clearfix "><div class=" et_pb_slide_description_testi et_pb_slide_description_testiEqual"><div class=" et_pb_slide_content_testi"><p>When teaching on the role and importance of structured and standardized data, BioPortal is an indispensible reference. It demonstrates the sheer size and number of ontologies, and the cross-ontology search helps to appreciate gaps, overlaps and target areas of and between ontologies. The annotator, mappings, and SPARQL endpoint help to provide insight in the potentials and challenges of building and using the linked open data cloud in the domain of healthcare and life sciences.</p> </div><div class="et_pb_slide_title_name et_pb_slide_title_name_testi"><strong>Ronald Cornet</strong> <span class="company_name"><a href="https://www.amsterdamumc.nl/" target="_blank">Amsterdam UMC</a></span></div></div> <div class="et_pb_slide_image_testi_responsive"><img decoding="async" src="https://www.bioontology.org/wp-content/plugins/divi-testimonial-slider/assets/images/default.png" height="125" width="125" alt="Ronald Cornet" /></div></div></div> <div class="et_pb_slide_testi swiper-slide " ><div class="et_pb_container_testi clearfix "><div class=" et_pb_slide_description_testi et_pb_slide_description_testiEqual"><div class=" et_pb_slide_content_testi"><p>I’m using BioPortal to browse and search different ontologies and vocabularies such as NDF-RT and SNOMED CT. I find codes for terms and restrictions on terms and I then copy them into clinical guideline representations so that I can use standard terminologies.</p> </div><div class="et_pb_slide_title_name et_pb_slide_title_name_testi"><strong>Mor Peleg</strong> <span class="company_name"><a href="https://www.haifa.ac.il/index.php/en/" target="_blank">University of Haifa</a></span></div></div> <div class="et_pb_slide_image_testi_responsive"><img loading="lazy" decoding="async" src="https://www.bioontology.org/wp-content/plugins/divi-testimonial-slider/assets/images/default.png" height="125" width="125" alt="Mor Peleg" /></div></div></div> <div class="et_pb_slide_testi swiper-slide " ><div class="et_pb_container_testi clearfix "><div class=" et_pb_slide_description_testi et_pb_slide_description_testiEqual"><div class=" et_pb_slide_content_testi"><p>I am an ontology developer and often ontology consumer. The BioPortal web site and ontology repository are my go to place for both sharing ontologies and finding other’s ontologies relevant to my work in computational biology. In addition, I have used the excellent web API to do automated search and retrievals in the BioPortal repository for annotation of a variety of types of documents.</p> </div><div class="et_pb_slide_title_name et_pb_slide_title_name_testi"><strong>James Sluka</strong> <span class="company_name"><a href="https://sice.indiana.edu/" target="_blank">Indiana University</a></span></div></div> <div class="et_pb_slide_image_testi_responsive"><img loading="lazy" decoding="async" src="https://www.bioontology.org/wp-content/plugins/divi-testimonial-slider/assets/images/default.png" height="125" width="125" alt="James Sluka" /></div></div></div> <div class="et_pb_slide_testi swiper-slide " ><div class="et_pb_container_testi clearfix "><div class=" et_pb_slide_description_testi et_pb_slide_description_testiEqual"><div class=" et_pb_slide_content_testi"><p>The Neuroscience Information Framework and dkNet awards greatly benefitted from the good work at BioPortal. When building our ontologies, NIF always had the philosophy of reuse, a FAIR before the term was coined. However, reuse presupposes that the things you want to reuse are indeed findable, accessible and interoperable. BioPortal makes all submitted terminologies, including our own, FAIR and thus has helped to shape the ontology community. Thank you!</p> </div><div class="et_pb_slide_title_name et_pb_slide_title_name_testi"><strong>Anita Bandrowski</strong> <span class="company_name"><a href="https://scicrunch.org/" target="_blank">SciCrunch</a></span></div></div> <div class="et_pb_slide_image_testi_responsive"><img loading="lazy" decoding="async" src="https://www.bioontology.org/wp-content/plugins/divi-testimonial-slider/assets/images/default.png" height="125" width="125" alt="Anita Bandrowski" /></div></div></div> <div class="et_pb_slide_testi swiper-slide " ><div class="et_pb_container_testi clearfix "><div class=" et_pb_slide_description_testi et_pb_slide_description_testiEqual"><div class=" et_pb_slide_content_testi"><p>The Semantic Systems Biology group at NTNU has been a regular user of BioPortal for many years. BioPortal has been very helpful as a resource for identifying and downloading ontologies most suitable for our projects. In a complementary way, we have also used BioPortal for disseminating application ontologies developed in our group: the Cell Cycle Ontology (CCO), the Gene Expression Ontology (GeXO), the Regulation of Gene Expression Ontology (ReXO) and the Regulation of Transcription Ontology (ReTO). We are honestly grateful to all the members of the BioPortal team for the continuous support they provide to the research community.</p> </div><div class="et_pb_slide_title_name et_pb_slide_title_name_testi"><strong>Vladimir Mironov</strong> <span class="company_name"><a href="https://www.ntnu.edu/biology/research/molecular-systems-biology/systems-biology#/view/about" target="_blank">Norwegian University of Science and Technology</a></span></div></div> <div class="et_pb_slide_image_testi_responsive"><img loading="lazy" decoding="async" src="https://www.bioontology.org/wp-content/plugins/divi-testimonial-slider/assets/images/default.png" height="125" width="125" alt="Vladimir Mironov" /></div></div></div> </div> <div class="ts_next_testi_0 swiper-button-next-prev swiper-button-next" data-icon="5"> </div><div class="ts_prev_testi_0 swiper-button-next-prev swiper-button-prev" data-icon="4"> </div> </div> </div> <style></style><script type="text/javascript">(function(){var waitForJQuery = 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