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We review a paper using a federated model for data analytics to address the COVID-19 pandemic and provide advice to junior faculty for hiring graduate students and postdocs. We also review a number of interesting news items. 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class="podcast-template-default single single-podcast postid-106 single-format-standard secondline-fancy-player elementor-default elementor-kit-73"> <div id="main-container-secondline" class=" secondline-themes-header-normal-width secondline-themes-logo-position-left secondline-themes-search-icon-off secondline-themes-one-page-nav-off " > <div id="secondline-themes-header-position"> <div id="secondline-fixed-nav"> <header id="masthead-slt" class="secondline-themes-site-header secondline-themes-nav-right"> <div id="secondline-themes-sidebar-fixed-nav"> <div id="logo-nav-slt"> <div class="width-container-slt secondline-themes-logo-container"> <h1 id="logo-slt" class="logo-inside-nav-slt noselect"> <a href="https://bmipodcast.org/" title="The Biomedical Informatics Roundtable Podcast" rel="home"> <img src="https://bmipodcast.org/wp-content/uploads/2019/10/logo.jpg" alt="The Biomedical Informatics Roundtable Podcast" class="secondline-themes-default-logo "> </a> </h1> </div> <div class="width-container-slt optional-centered-area-on-mobile"> <div class="mobile-menu-icon-slt noselect"><i class="fa fa-bars"></i></div> <div id="secondline-themes-header-search-icon" class="noselect"> <i class="fa fa-search"></i> <div id="panel-search-secondline"> <form method="get" class="search-form" action="https://bmipodcast.org/"> <label> <span class="screen-reader-text">Search for:</span> <input type="search" class="search-field" placeholder="Search..." value="" name="s"> </label> <input type="submit" class="search-submit" value="Submit"> <div class="clearfix-slt"></div> </form><div class="clearfix-slt"></div> </div> </div> <div id="secondline-inline-icons"> <div class="secondline-themes-social-icons"> <div class="clearfix-slt"></div> </div></div> <div id="secondline-nav-container"> <nav id="site-navigation" class="main-navigation"> <div class="clearfix-slt"></div> </nav> <div class="clearfix-slt"></div> </div> <div class="clearfix-slt"></div> </div> </div> <div id="main-nav-mobile"> <div class="secondline-themes-social-icons"> <div class="clearfix-slt"></div> </div> <div class="sidebar secondline-themes-mobile-sidebar"></div> <div class="clearfix-slt"></div> </div> </div> </header> </div> </div> <div id="page-title-slt-post-page"> <div id="blog-post-title-meta-container" > <div class="width-container-slt"> <h1 class="blog-page-title">Episode 10: Federated Data</h1> <div class="single-secondline-post-meta"> <span class="blog-meta-date-display">November 4, 2020</span> <span class="blog-meta-author-display"><a href="https://bmipodcast.org/author/moorejh28/">moorejh28</a></span> <span class="single-blog-meta-category-list"> The Biomedical Informatics Roundtable Podcast </span> <span class="blog-meta-comments"><span>Comments Off<span class="screen-reader-text"> on Episode 10: Federated Data</span></span></span> </div> <div id="single-post-player"> <div id="player-float-secondline"> <div class="single-player-container-secondline"> <div class="podcast-episode episode-106"> <h3 class="episode-title">Episode 10: Federated Data</h3> <div id="podcast_player_106" class="podcast_player"></div> </div> </div> </div> </div> <div class="clearfix-slt"></div> </div> </div> </div> <div id="content-slt" class="site-content-blog-post"> <div class="width-container-slt "> <div id="main-container-slt"> <div id="post-106" class="post-106 podcast type-podcast status-publish format-standard hentry series-the-biomedical-informatics-roundtable-podcast"> <div class="secondline-single-container"> <div class="secondline-blog-single-content"> <div class="secondline-themes-blog-single-excerpt"> <figure class="wp-block-embed-soundcloud wp-block-embed is-type-rich is-provider-soundcloud wp-embed-aspect-4-3 wp-has-aspect-ratio"><div class="wp-block-embed__wrapper"> <iframe title="Episode 10 - Sharing EHR Data by The Biomedical Informatics Roundtable Podcast" width="1200" height="400" scrolling="no" frameborder="no" src="https://w.soundcloud.com/player/?visual=true&url=https%3A%2F%2Fapi.soundcloud.com%2Ftracks%2F923382073&show_artwork=true&maxwidth=1200&maxheight=1000&dnt=1"></iframe> </div></figure> <p>In this eleventh episode, we discuss federated versus centralized data for collaborative projects across institutions. We review a paper using a federated model for data analytics to address the COVID-19 pandemic and provide advice to junior faculty for hiring graduate students and postdocs. We also review a number of interesting news items. Below are links to the resources and news pieces mentioned in the episode.</p> <p><a href="https://www.youtube.com/watch?v=HznNEz66hb8">Jason’s talk</a> at the Vintage Computer Festival (VCF) East on an interactive demo of the 6502 processor for Atari 8-bit home computers</p> <p>The <a href="https://sail.health/presymposium.html">pre-Symposium</a> on Artificial Intelligence for Learning Health Systems (SAIL)</p> <p>The <a href="https://ncats.nih.gov/n3c">National COVID Cohort Collaborative</a> (N3C) using a centralized model for data analytics</p> <p>The <a href="https://covidclinical.net/">Consortium for Clinical Characterization of COVID-19 by EHR</a> (4CE) using a federated model for data analytics </p> <p><a href="https://ohdsi.org/">Observational Health Data Sciences and Informatics</a> (OHDSI) consortium using the Observational Medical Outcomes Partnership (OMOP) common data model</p> <p><a href="https://leapsmag.com/im-a-black-genderqueer-medical-student-heres-my-hard-won-wisdom-for-students-and-educational-institutions/">I’m a Black, Genderqueer Medical Student: Here’s My Hard-Won Wisdom for Students and Educational Institutions</a></p> <p><a href="https://in.reuters.com/article/ibm-divestiture/ibm-to-break-up-109-year-old-company-to-focus-on-cloud-growth-idUSKBN26T1V1">IBM to break up 109-year old company to focus on cloud growth</a></p> <p>Dr. Isaac Kohane wins the <a href="https://www.amia.org/news-and-publications/press-release/isaac-kohane-md-phd-facmi-be-awarded-morris-f-collen-award">AMIA Morris F. Collen award</a></p> <p>The list of <a href="https://www.amia.org/news-and-publications/press-release/13-fellows-be-inducted-american-college-medical-informatics">13 newly elected fellows</a> of the American College of Medical Informatics (ACMI) including our own Dr. Marylyn Ritchie!</p> <p>Piece in <a href="https://www.genomeweb.com/informatics/demand-grows-chief-research-information-officers-role-evolves-along-data-types">GenomeWeb </a>on Chief Research Information Officers (CRIOs)</p> <p><a href="https://arxiv.org/abs/1806.00388">Paper by Dr. Marzeh Ghassemi</a> on challenges and opportunities for machine learning in healthcare</p> <p><a href="https://www.nature.com/articles/s41591-020-1041-y">Paper by Dr. Atul Butte</a> and colleagues on the minimal information needed to report clinical AI results</p> <p><a href="https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-1926-6">Eleven grand challenges of data science for single-cell genomics</a></p> <p><a href="https://science.sciencemag.org/content/370/6514/272">Piece in Science</a> on the tanking of the U.S. faculty job market</p> <p><a href="https://www.nature.com/articles/s41467-020-18849-z">Our journal club pape</a>r on “Deep phenotyping of 34,128 adult patients hospitalised with COVID-19 in an international network study” by Burn et al.</p> <p>The PVCLUST package on <a href="https://cran.r-project.org/web/packages/pvclust/index.html">CRAN </a>and the <a href="https://academic.oup.com/bioinformatics/article/22/12/1540/207339">initial paper </a>describing the method and software</p> <p><a href="https://psb.stanford.edu/registration/">Registration </a>and <a href="https://psb.stanford.edu/abstract.html">poster submission information</a> for the Pacific Symposium on Biocomputing (PSB)</p> <p>T<a href="https://www.amia.org/amia2020">he virtual meeting of the American Medical Informatics Association</a> (AMIA) on Nov. 11-18, 2020</p> </div> <div class="clearfix-slt"></div> <ul 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href="https://bmipodcast.org/podcast/episode-18-ai-hype/">Episode 18: AI Hype</a> <span class="post-date">February 19, 2023</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-17-dealing-with-failure/">Episode 17: Dealing With Failure</a> <span class="post-date">March 5, 2022</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-16-changing-institutions/">Episode 16: Changing Institutions</a> <span class="post-date">September 9, 2021</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-15-writing-motivation/">Episode 15: Writing Motivation</a> <span class="post-date">June 28, 2021</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-14-cultivating-an-informatics-career/">Episode 14: Cultivating an Informatics Career</a> <span class="post-date">May 23, 2021</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-13-federated-machine-learning/">Episode 13: Federated Machine Learning</a> <span class="post-date">March 7, 2021</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-12-inf/">Episode 12: Informatics History</a> <span class="post-date">January 24, 2021</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-11-leadership-roles/">Episode 11: Leadership Roles</a> <span class="post-date">December 12, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-10-federated-data/">Episode 10: Federated Data</a> <span class="post-date">November 4, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-9-leadership-coaching/">Episode 9: Leadership Coaching</a> <span class="post-date">August 1, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-8-covid-19-data-science/">Episode 8: COVID-19 Data Science</a> <span class="post-date">June 29, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-7-informatics-consortia/">Episode 7: Informatics Consortia</a> <span class="post-date">May 26, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-6-the-metaverse/">Episode 6: The Metaverse</a> <span class="post-date">May 10, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/evolutionary-computation/">Episode 5: Evolutionary Computation</a> <span class="post-date">March 29, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-4-leadership-skills/">Episode 4: Leadership Skills</a> <span class="post-date">February 22, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/informatics-journals/">Episode 3: Informatics Journals</a> <span class="post-date">January 29, 2020</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-2-data-science/">Episode 2: Data Science</a> <span class="post-date">December 18, 2019</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-1-machine-learning-interpretation/">Episode 1: Machine Learning Interpretation</a> <span class="post-date">November 8, 2019</span> </li> <li> <a href="https://bmipodcast.org/podcast/episode-0-deep-phenotyping/">Episode 0: Deep Phenotyping</a> <span class="post-date">October 12, 2019</span> </li> </ul> </div><div id="text-2" class="widget widget_text"><h4 class="widget-title">Hosts</h4> <div class="textwidget"><p>The Biomedical Informatics Roundtable Podcast is hosted by Jason H. Moore, Ph.D. and Marylyn D. Ritchie, Ph.D.</p> <p>Dr. Moore is Chair of the Department of Computational Biomedicine at <a href="https://www.cedars-sinai.org/">Cedars-Sinai Medical Center</a> in Los Angeles, CA.</p> <p>Dr. Ritchie is Professor of <a href="https://www.med.upenn.edu/genetics/">Genetics</a>, Associate Director of the Institute for Biomedical Informatics, and Associate Director of the <a href="https://www.med.upenn.edu/pcpm/">Penn Center for Precision Medicine</a> at Penn Medicine of the University of Pennsylvania.</p> </div> </div> <div class="clearfix-slt"></div> </div> </div> <div id="secondline-themes-copyright"> <div class="width-container-slt"> </div>  <div class="width-container-slt"> <ul class="secondline-themes-social-icons secondline-themes-footer-icon-text-hide secondline-themes-footer-icon-align-right"> <li><a href="https://www.facebook.com/Biomedical-Informatics-Roundtable-Podcast-101122651309537" target="_blank" class="secondline-themes-facebook" title="Facebook"><i class="fab fa-facebook-f"></i><span>Facebook</span></a></li> <li><a href="https://twitter.com/bmirpodcast" target="_blank" class="secondline-themes-twitter" title="Twitter"><i class="fab fa-twitter"></i><span>Twitter</span></a></li> <li><a href="#!" target="_blank" class="secondline-themes-soundcloud" title="Soundcloud"><i class="fab fa-soundcloud"></i><span>Soundcloud</span></a></li> <li><a href="mailto:feedback@bmipodcast.org" class="secondline-themes-mail" title="Email"><i class="fa fa-envelope"></i><span>Email</span></a></li> </ul> <div id="copyright-text"> Copyright 2020 by Jason H. 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